Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1766

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3560
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:554 original size:19 final size:18

Alignment explanation


    Indices: 530--566  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

        520 TTTTTTTTAA

                               
        530 TAAATTATTAATTTATTAT
          1 TAAATTATTAA-TTATTAT

                     *        
        549 TAAATTATTCATTATTAT
          1 TAAATTATTAATTATTAT

        567 GAATTTTCAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57


Consensus pattern (18 bp):   
TAAATTATTAATTATTAT
Done.