genome.fa.s1768.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1768
Parameters: 2 7 7 80 10 50 1000
Length:  77183

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9083--9183	1	101.0	1	75	0	85	87	9	1	0	0.68
9081--9182	42	2.5	40	81	10	129	86	10	1	0	0.71
9084--9183	37	2.9	34	78	11	107	87	10	2	1	0.69
10617--10675	27	2.1	28	87	3	84	32	33	15	18	1.92
10746--10850	30	3.6	30	94	2	178	32	28	18	20	1.96
10746--10874	60	2.2	60	86	8	174	34	30	16	19	1.94
10894--11122	48	4.8	47	79	10	243	26	24	17	31	1.97
10992--11077	42	2.0	42	93	0	145	27	24	18	29	1.98
10943--11122	91	1.9	93	90	5	285	27	24	16	31	1.96
11010--11077	21	3.2	21	64	22	52	27	26	17	27	1.98
11984--12050	33	2.0	33	85	0	89	34	10	13	41	1.79
12004--12028	13	1.9	13	100	0	50	36	16	16	32	1.90
12091--12115	13	1.9	13	100	0	50	32	16	16	36	1.90
12124--12247	52	2.4	52	94	1	214	35	18	17	28	1.94
13103--13143	21	2.0	21	90	0	64	26	19	14	39	1.90
17294--17318	4	6.2	4	100	0	50	76	0	0	24	0.80
19446--19500	28	1.9	29	88	3	85	36	18	25	20	1.94
19398--19582	78	2.4	78	80	4	194	32	16	27	23	1.96
19534--19605	28	2.6	28	88	0	99	23	19	34	22	1.96
19593--19862	52	5.4	51	80	8	241	32	10	25	30	1.90
19873--19997	51	2.4	52	86	9	166	32	12	24	31	1.92
22305--22330	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22284--22350	33	2.0	33	85	0	89	43	14	14	26	1.85
26144--26520	79	4.8	78	81	4	373	31	14	25	28	1.95
26144--26519	158	2.4	157	79	3	434	31	14	26	28	1.94
26459--26637	51	3.5	51	83	3	243	34	12	24	29	1.91
28933--28999	20	3.7	20	74	25	85	40	14	17	26	1.89
28952--28982	13	2.4	13	100	0	62	38	16	16	29	1.90
28933--28999	33	2.0	33	100	0	134	40	14	17	26	1.89
29058--29082	13	1.9	13	100	0	50	32	20	16	32	1.94
33729--34793	59	18.2	59	89	4	1548	24	27	21	26	1.99
33729--34849	407	2.7	408	89	3	1647	24	27	21	26	1.99
35496--35551	21	2.7	21	97	0	103	33	10	19	35	1.87
35583--35628	23	2.0	24	87	8	69	36	10	15	36	1.82
35610--35663	20	2.8	19	86	13	83	33	11	16	38	1.84
35703--35728	13	2.0	13	100	0	52	38	15	7	38	1.76
36747--36813	37	1.9	35	88	11	102	29	25	11	32	1.92
37271--37296	13	2.0	13	100	0	52	30	15	15	38	1.88
37335--37410	21	3.7	21	79	10	102	27	18	11	42	1.85
37355--37451	20	4.8	20	77	9	99	27	17	14	40	1.89
37335--37428	41	2.3	41	98	0	179	28	19	12	39	1.88
39337--39361	13	1.9	13	100	0	50	32	16	16	36	1.90
42573--42639	37	1.9	35	88	11	102	29	25	11	32	1.92
43097--43122	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43161--43236	21	3.7	21	75	10	93	28	18	10	42	1.83
43185--43277	20	4.6	20	76	10	91	27	17	13	40	1.88
43161--43254	41	2.3	41	96	0	170	29	19	11	39	1.87
45062--45192	51	2.5	53	81	8	169	31	25	10	32	1.90
45059--45204	51	2.9	49	80	10	143	30	26	10	32	1.90
45207--45376	52	3.3	50	76	11	155	29	24	12	33	1.92
45360--45436	28	2.8	28	85	0	91	23	32	19	24	1.97
57910--57963	12	4.4	12	90	9	74	83	11	5	0	0.80
57911--57973	15	4.6	14	75	14	51	84	9	6	0	0.79
57927--57973	9	5.6	8	80	16	51	85	10	4	0	0.74
57912--57956	11	3.8	11	88	8	54	84	8	6	0	0.78
57910--57963	13	4.4	12	88	9	65	83	11	5	0	0.80
59007--59092	27	3.1	27	62	15	68	27	30	18	23	1.98
58978--60311	59	23.0	59	88	5	1678	25	27	20	25	1.99
58978--60311	525	2.6	525	92	2	2169	25	27	20	25	1.99
59034--60340	407	3.2	405	88	5	1910	25	27	20	26	1.99
61011--61067	21	2.7	21	97	0	105	33	10	19	36	1.86
61198--61223	13	2.0	13	100	0	52	30	15	15	38	1.88
61178--61244	33	2.0	33	88	0	98	25	14	16	43	1.86
63579--63868	52	5.6	51	77	8	289	31	25	10	32	1.90
63588--63868	105	2.7	103	81	8	302	31	25	11	32	1.90
63852--63928	28	2.8	28	85	0	91	23	32	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65150--65202	20	2.7	20	85	8	72	41	16	13	28	1.86
68734--68758	13	1.9	13	100	0	50	36	16	16	32	1.90
68822--68846	13	1.9	13	100	0	50	32	16	16	36	1.90
69364--69388	13	1.9	13	100	0	50	32	20	16	32	1.94
71952--72005	20	2.6	21	85	5	74	42	16	12	27	1.85
73419--73493	22	3.4	22	75	10	64	46	1	0	52	1.09
73396--73483	36	2.3	38	77	16	94	42	2	0	55	1.12

Tables:   1

The End!