Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1769
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 283831
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
File 1 of 2
Found at i:1777 original size:22 final size:24
Alignment explanation
Indices: 1742--1787 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
1732 GCTCCGTTTG
*
1742 TTTAAATTACTA-TTTATA-AAAT
1 TTTAAAATACTATTTTATATAAAT
*
1764 TTTAAAATATTATTTTATATAAAT
1 TTTAAAATACTATTTTATATAAAT
1788 ATTTTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 6 0.30
24 4 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTAAAATACTATTTTATATAAAT
Found at i:2554 original size:46 final size:48
Alignment explanation
Indices: 2501--2604 Score: 151
Period size: 47 Copynumber: 2.2 Consensus size: 48
2491 TTTTTATTCC
2501 TATTGAGTGAC-AAAAATTTCGTTC-AGATACTTATATTTAGATTCA-T
1 TATTGAGTGACAAAAAATTTCGTTCTA-ATACTTATATTTAGATTCATT
* *
2547 TATTGAGTGACAAAAAATTTTGTTCTAATTCTTATATTTAGATTCATT
1 TATTGAGTGACAAAAAATTTCGTTCTAATACTTATATTTAGATTCATT
*
2595 TATTAAGTGA
1 TATTGAGTGA
2605 ATTGAAGTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 11 0.21
47 30 0.58
48 11 0.21
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (48 bp):
TATTGAGTGACAAAAAATTTCGTTCTAATACTTATATTTAGATTCATT
Found at i:3329 original size:21 final size:20
Alignment explanation
Indices: 3299--3356 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 20
3289 TTTATTTATT
* *
3299 TTTTAGTTTAATTTGTTATA
1 TTTTAATTTAATTTGTTAAA
3319 TTTTAAATTTAAATTAT-TTAAA
1 TTTT-AATTT-AATT-TGTTAAA
*
3341 TTTTAATTTATTTTGT
1 TTTTAATTTAATTTGT
3357 ATTTAAATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
19 1 0.03
20 8 0.26
21 9 0.29
22 12 0.39
23 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTAATTTAATTTGTTAAA
Found at i:3336 original size:16 final size:16
Alignment explanation
Indices: 3317--3364 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
3307 TAATTTGTTA
3317 TATTTTAAATTTAAAT
1 TATTTTAAATTTAAAT
*
3333 TA-TTTAAATTTTAATT
1 TATTTTAAA-TTTAAAT
**
3349 TATTTTGTATTTAAAT
1 TATTTTAAATTTAAAT
3365 CAATTGAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 6 0.23
16 16 0.62
17 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTTTAAATTTAAAT
Found at i:3345 original size:42 final size:39
Alignment explanation
Indices: 3279--3356 Score: 93
Period size: 42 Copynumber: 1.9 Consensus size: 39
3269 TTATTTTAAG
** *
3279 ATTTTAAATTTTTATTTATTTTTTAGTTTAATTTGTTAT
1 ATTTTAAATTTTTATTTAAATTTTAATTTAATTTGTTAT
*
3318 ATTTTAAATTTAAATTATTTAAATTTTAATTTATTTTGT
1 ATTTTAAATTT---TTATTTAAATTTTAATTTAATTTGT
3357 ATTTAAATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 11 0.34
42 21 0.66
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (39 bp):
ATTTTAAATTTTTATTTAAATTTTAATTTAATTTGTTAT
Found at i:4570 original size:23 final size:21
Alignment explanation
Indices: 4537--4583 Score: 51
Period size: 23 Copynumber: 2.1 Consensus size: 21
4527 TTAAACATAT
*
4537 TTTTATATAAATATT-TATAAA
1 TTTTATATAAA-ATTAAATAAA
4558 TTTTATAATTAAAATTAAATAAA
1 TTTTAT-A-TAAAATTAAATAAA
4581 TTT
1 TTT
4584 ATTTTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 6 0.27
22 4 0.18
23 12 0.55
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTTATATAAAATTAAATAAA
Found at i:5003 original size:12 final size:13
Alignment explanation
Indices: 4985--5015 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
4975 ACCTTCATCA
4985 AATTATAAATAAT
1 AATTATAAATAAT
4998 -ATTATAAATAAT
1 AATTATAAATAAT
5010 AATTAT
1 AATTAT
5016 TTTCTTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AATTATAAATAAT
Found at i:13062 original size:28 final size:26
Alignment explanation
Indices: 13031--13119 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 26
13021 TTAAAATTTG
13031 ATTTAATTATAAATTAAAAGTTAAGATT
1 ATTTAA-TATAAATTAAAAGTTAA-ATT
* * *
13059 ATTTTAGTATAAGTTAAAAATTATAAATTT
1 A-TTTAATATAAATT-AAAAGT-TAAA-TT
13089 ATTTTAATATAAATTAAAAGTTAAATT
1 A-TTTAATATAAATTAAAAGTTAAATT
13116 -TTTA
1 ATTTA
13120 TCTGATTGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
25 4 0.08
27 2 0.04
28 12 0.24
29 15 0.29
30 18 0.35
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (26 bp):
ATTTAATATAAATTAAAAGTTAAATT
Found at i:13120 original size:30 final size:28
Alignment explanation
Indices: 13024--13116 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 28
13014 AATTATTTTA
13024 AAATTTGA-TTTAATTATAAATTAAAAGTT
1 AAATTT-ATTTTAA-TATAAATTAAAAGTT
* * *
13053 AAGA-TTATTTTAGTATAAGTTAAAAATTAT
1 AA-ATTTATTTTAATATAAATT-AAAAGT-T
13083 AAATTTATTTTAATATAAATTAAAAGTT
1 AAATTTATTTTAATATAAATTAAAAGTT
13111 AAATTT
1 AAATTT
13117 TTATCTGATT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
28 15 0.28
29 19 0.36
30 19 0.36
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATTTATTTTAATATAAATTAAAAGTT
Found at i:14482 original size:24 final size:24
Alignment explanation
Indices: 14455--14506 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
14445 CAAAAGGAAA
14455 AGGAAGAAAGAAGTCAATTTCTAG
1 AGGAAGAAAGAAGTCAATTTCTAG
14479 AGGAAGAAAGAAGTCAATTTCTAG
1 AGGAAGAAAGAAGTCAATTTCTAG
14503 -GGAA
1 AGGAA
14507 AAGGACTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.46, C:0.08, G:0.27, T:0.19
Consensus pattern (24 bp):
AGGAAGAAAGAAGTCAATTTCTAG
Found at i:17284 original size:29 final size:29
Alignment explanation
Indices: 17251--17307 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
17241 GATTTTAAAT
*
17251 AGTAATA-TTATTAATATAAATATTAAAAG
1 AGTAATATTTATTAACA-AAATATTAAAAG
*
17280 AGTAATATTTATTAGCAAAATATTAAAA
1 AGTAATATTTATTAACAAAATATTAAAA
17308 AATATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (29 bp):
AGTAATATTTATTAACAAAATATTAAAAG
Found at i:18558 original size:22 final size:20
Alignment explanation
Indices: 18541--18579 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18531 TAATATGTTA
18541 TATATATATATATTATATTT
1 TATATATATATATTATATTT
* *
18561 TATATTTTTATATTATATT
1 TATATATATATATTATATT
18580 AATATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATATATATATATTATATTT
Found at i:18572 original size:20 final size:19
Alignment explanation
Indices: 18549--18590 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
18539 TATATATATA
*
18549 TATATTATATTTTATATTTT
1 TATATTATA-TTAATATTTT
18569 TATATTATATTAATATTTT
1 TATATTATATTAATATTTT
18588 TAT
1 TAT
18591 GTTTATACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TATATTATATTAATATTTT
Found at i:18595 original size:25 final size:26
Alignment explanation
Indices: 18543--18597 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
18533 ATATGTTATA
*
18543 TATATATATATTATATTTTATATTTT
1 TATATATATATTATATTTTATATGTT
18569 TATAT-TATATTAATATTTT-TATGTT
1 TATATATATATT-ATATTTTATATGTT
18594 TATA
1 TATA
18598 CCATTTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TATATATATATTATATTTTATATGTT
Found at i:18822 original size:24 final size:23
Alignment explanation
Indices: 18790--18840 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
18780 AAATTTTTTA
*
18790 AAAATAA-TTTAAAATTATATATT
1 AAAATAATTTTAAAATTA-AAATT
*
18813 AAAATAAATTTTAAACTTAAAATT
1 AAAAT-AATTTTAAAATTAAAATT
18837 AAAA
1 AAAA
18841 CTTAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.21
24 10 0.42
25 9 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AAAATAATTTTAAAATTAAAATT
Found at i:18869 original size:21 final size:20
Alignment explanation
Indices: 18845--18896 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
18835 TTAAAACTTA
*
18845 AAATTTTAAAAAAAATTATGT
1 AAATTTTAAAAAAAA-TATAT
* *
18866 AAA-TTTAGATAAAATATAT
1 AAATTTTAAAAAAAATATAT
18885 AATATTTTAAAA
1 AA-ATTTTAAAA
18897 TTTTAAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
19 6 0.25
20 10 0.42
21 8 0.33
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (20 bp):
AAATTTTAAAAAAAATATAT
Found at i:19665 original size:22 final size:22
Alignment explanation
Indices: 19640--19682 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
19630 TTAAATAACA
*
19640 ATTATAAAATTATATTATTATC
1 ATTATAAAATAATATTATTATC
* *
19662 ATTATTAAATAATTTTATTAT
1 ATTATAAAATAATATTATTAT
19683 TTTTATTATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTATAAAATAATATTATTATC
Found at i:20196 original size:2 final size:2
Alignment explanation
Indices: 20189--20215 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20179 TTTGGCCTAC
20189 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
20216 CAGATCAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20829 original size:3 final size:3
Alignment explanation
Indices: 20821--20856 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
20811 GAACTACATA
20821 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
20857 TTTGATGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:22088 original size:17 final size:17
Alignment explanation
Indices: 22068--22114 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
22058 TAAATTTTAT
*
22068 TTTAATTTATAAATAAA
1 TTTAATTTATAAAAAAA
22085 TTTAATATATATTAAAAAAA
1 TTTAAT-T-TA-TAAAAAAA
22105 TTT-ATTTATA
1 TTTAATTTATA
22115 TTAGTGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 2 0.08
17 8 0.31
18 2 0.08
19 4 0.15
20 10 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAATTTATAAAAAAA
Found at i:22116 original size:19 final size:20
Alignment explanation
Indices: 22077--22117 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22067 TTTTAATTTA
*
22077 TAAATAAATTTAATATATAT
1 TAAAAAAATTTAATATATAT
*
22097 TAAAAAAATTT-ATTTATAT
1 TAAAAAAATTTAATATATAT
22116 TA
1 TA
22118 GTGTAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TAAAAAAATTTAATATATAT
Found at i:23009 original size:2 final size:2
Alignment explanation
Indices: 23002--23026 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22992 AATTATCATT
23002 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
23027 CAACATGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24585 original size:5 final size:5
Alignment explanation
Indices: 24575--24601 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
24565 AAACATACCT
24575 CTCCC CTCCC CTCCC CTCCC CTCCC CT
1 CTCCC CTCCC CTCCC CTCCC CTCCC CT
24602 GTTTTATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.78, G:0.00, T:0.22
Consensus pattern (5 bp):
CTCCC
Found at i:26685 original size:26 final size:26
Alignment explanation
Indices: 26630--26679 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26620 TATCTTCATC
*
26630 AATTATTTTTTAAATTTTATTTATTT
1 AATTATTTTTGAAATTTTATTTATTT
26656 AATTATTTTTGAAA--TTATTTATTT
1 AATTATTTTTGAAATTTTATTTATTT
26680 TTAATTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.43
26 13 0.57
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (26 bp):
AATTATTTTTGAAATTTTATTTATTT
Found at i:26896 original size:19 final size:19
Alignment explanation
Indices: 26871--26910 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
26861 TTTAATTTTT
*
26871 ATTTAAAACTAATT-ATAA
1 ATTTTAAACTAATTAATAA
*
26889 ATTTTAAATTAATTAATAA
1 ATTTTAAACTAATTAATAA
26908 ATT
1 ATT
26911 AACATACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTTAAACTAATTAATAA
Found at i:26925 original size:20 final size:20
Alignment explanation
Indices: 26900--26942 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
26890 TTTTAAATTA
26900 ATTAA-TAAATTAACATACAT
1 ATTAATTAAATTAA-ATACAT
*
26920 ATTAATTAATTTAAATACAT
1 ATTAATTAAATTAAATACAT
26940 ATT
1 ATT
26943 TACAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTAATTAAATTAAATACAT
Found at i:26966 original size:15 final size:17
Alignment explanation
Indices: 26940--26975 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
26930 TTAAATACAT
26940 ATTTACAAATAAAA-TA
1 ATTTACAAATAAAATTA
26956 ATTTA-AAATAAAATTA
1 ATTTACAAATAAAATTA
26972 ATTT
1 ATTT
26976 TAATACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTACAAATAAAATTA
Found at i:27745 original size:29 final size:30
Alignment explanation
Indices: 27711--27767 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
27701 TAATTTTAAA
*
27711 TTATTATTTTACATAAATAT-ATTTTATTT
1 TTATTATTTAACATAAATATAATTTTATTT
* *
27740 TTATTATTTAATATAAGTATAATTTTAT
1 TTATTATTTAACATAAATATAATTTTAT
27768 AAATTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (30 bp):
TTATTATTTAACATAAATATAATTTTATTT
Found at i:28378 original size:13 final size:13
Alignment explanation
Indices: 28360--28392 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
28350 ATTATCAATA
28360 TATATTTATATTT
1 TATATTTATATTT
*
28373 TATATTTTTATTT
1 TATATTTATATTT
28386 TA-ATTTA
1 TATATTTA
28393 CAAAATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TATATTTATATTT
Found at i:28530 original size:3 final size:3
Alignment explanation
Indices: 28522--28554 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
28512 CTATTTTATA
28522 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
28555 AGTTTTTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:29489 original size:12 final size:12
Alignment explanation
Indices: 29455--29488 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
29445 GAGTTTTGCA
29455 TTTTATTTTAAAT
1 TTTTATTTT-AAT
29468 TTTTATTTTAAT
1 TTTTATTTTAAT
29480 TTTGTATTT
1 TTT-TATTT
29489 ATGTTTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTTTAAT
Found at i:30839 original size:13 final size:12
Alignment explanation
Indices: 30804--30841 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
30794 AATATTTTCA
30804 TTTTAATTAAAT
1 TTTTAATTAAAT
*
30816 TTTTAAATAAAT
1 TTTTAATTAAAT
30828 TTATTAATTAAAT
1 TT-TTAATTAAAT
30841 T
1 T
30842 AACATCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTTAATTAAAT
Found at i:31189 original size:10 final size:9
Alignment explanation
Indices: 31176--31223 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
31166 TAAAATTAAT
31176 TTTTTTATA
1 TTTTTTATA
*
31185 TTTTTAATA
1 TTTTTTATA
*
31194 ATTTTTATA
1 TTTTTTATA
*
31203 TTATTTATA
1 TTTTTTATA
31212 TTTATTTA-A
1 TTT-TTTATA
31221 TTT
1 TTT
31224 GATTTTTATG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
9 28 0.88
10 4 0.12
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTTATA
Found at i:31571 original size:21 final size:20
Alignment explanation
Indices: 31542--31580 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
31532 ATTTGTTTAA
31542 TTTAATTATTATATTTTATCT
1 TTTAATTATTAT-TTTTATCT
*
31563 TTTATTTATTATTTTTAT
1 TTTAATTATTATTTTTAT
31581 AAATTATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTAATTATTATTTTTATCT
Found at i:31677 original size:17 final size:17
Alignment explanation
Indices: 31650--31689 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
31640 AAAATTTTAT
31650 TATTAAATATATATTAAAA
1 TATT-AATATA-ATTAAAA
31669 -ATTAATATAATTAAAA
1 TATTAATATAATTAAAA
31685 TATTA
1 TATTA
31690 TATCAATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.35
17 10 0.50
18 3 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TATTAATATAATTAAAA
Found at i:31687 original size:26 final size:26
Alignment explanation
Indices: 31634--31687 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
31624 TATTTATTCA
* *
31634 ATATTAAAAATTTTATTATTAAATAT
1 ATATTAAAAATTATATAATTAAATAT
31660 ATATTAAAAATTAATATAATTAAA-AT
1 ATATTAAAAATT-ATATAATTAAATAT
31686 AT
1 AT
31688 TATATCAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATATTAAAAATTATATAATTAAATAT
Found at i:32185 original size:2 final size:2
Alignment explanation
Indices: 32178--32202 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32168 ATAGCATGAA
32178 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
32203 AAATATGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32308 original size:18 final size:18
Alignment explanation
Indices: 32281--32322 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32271 TTATTATAAT
*
32281 TTAA-ATAATTAATATTA
1 TTAATATAATTAAAATTA
32298 TTAATATAATTAAAATTA
1 TTAATATAATTAAAATTA
*
32316 TTTATAT
1 TTAATAT
32323 TTAATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAATATAATTAAAATTA
Found at i:34279 original size:19 final size:21
Alignment explanation
Indices: 34235--34279 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
34225 TTTTTAAGAT
*
34235 TATTTATTTTTAATTCTTTGA
1 TATTTATTTTTAATTATTTGA
*
34256 TATTTA-TTTT-ATTATTTTA
1 TATTTATTTTTAATTATTTGA
34275 TATTT
1 TATTT
34280 TAATATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.55
20 4 0.18
21 6 0.27
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (21 bp):
TATTTATTTTTAATTATTTGA
Found at i:34304 original size:31 final size:32
Alignment explanation
Indices: 34260--34323 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
34250 CTTTGATATT
34260 TATTTTATTA-TTTTATATTTTAATATAAATA
1 TATTTTATTATTTTTATATTTTAATATAAATA
*
34291 TATTTT-TTAATTTTTTATCTTTTAATATAAATA
1 TATTTTATT-A-TTTTTATATTTTAATATAAATA
34324 CTAAGAGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 2 0.07
31 7 0.24
33 20 0.69
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (32 bp):
TATTTTATTATTTTTATATTTTAATATAAATA
Found at i:34337 original size:33 final size:32
Alignment explanation
Indices: 34264--34337 Score: 76
Period size: 33 Copynumber: 2.2 Consensus size: 32
34254 GATATTTATT
****
34264 TTATTATTTTATATTTTAATATAAATATATTTT
1 TTATT-TTTTATATTTTAATATAAATATAAGAG
*
34297 TTAATTTTTTATCTTTTAATATAAATACTAAGAG
1 TT-ATTTTTTATATTTTAATATAAATA-TAAGAG
34331 TTATTTT
1 TTATTTT
34338 CATTTCGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
33 27 0.79
34 7 0.21
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (32 bp):
TTATTTTTTATATTTTAATATAAATATAAGAG
Found at i:35629 original size:27 final size:28
Alignment explanation
Indices: 35578--35631 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 28
35568 TGATAGAATT
35578 AAGGACATGATTAAATTATTGATTAAAA
1 AAGGACATGATTAAATTATTGATTAAAA
35606 AAGGACATGATT-AATTATTGATTAAA
1 AAGGACATGATTAAATTATTGATTAAA
35632 TTCTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.48, C:0.04, G:0.15, T:0.33
Consensus pattern (28 bp):
AAGGACATGATTAAATTATTGATTAAAA
Found at i:36382 original size:17 final size:16
Alignment explanation
Indices: 36341--36382 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
36331 AAAATATAAA
36341 AATATTAAATTGTGAT
1 AATATTAAATTGTGAT
*
36357 AAAATTAAATT-TAGAT
1 AATATTAAATTGT-GAT
36373 CAATATTAAA
1 -AATATTAAA
36383 AATATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 1 0.05
16 13 0.59
17 8 0.36
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.38
Consensus pattern (16 bp):
AATATTAAATTGTGAT
Found at i:36507 original size:23 final size:25
Alignment explanation
Indices: 36463--36515 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
36453 TAAAATTAAA
36463 TTATTTTTATATGATTTATA-TTTAT
1 TTATTTTTATAT-ATTTATATTTTAT
36488 TTATTTTTATAT-TTTATATTTTAT
1 TTATTTTTATATATTTATATTTTAT
36512 TTAT
1 TTAT
36516 ATAAATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 6 0.22
24 9 0.33
25 12 0.44
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (25 bp):
TTATTTTTATATATTTATATTTTAT
Found at i:36656 original size:21 final size:21
Alignment explanation
Indices: 36614--36656 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
36604 TGCAGAGAAA
*
36614 ATGATAATTTTTTTAGAAATG
1 ATGATAATTTTTTTAAAAATG
36635 ATGATAA-TTTTTTAAAATATG
1 ATGATAATTTTTTTAAAA-ATG
36656 A
1 A
36657 AAAATACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (21 bp):
ATGATAATTTTTTTAAAAATG
Found at i:37104 original size:9 final size:9
Alignment explanation
Indices: 37067--37095 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
37057 TTTGTTATTT
37067 TTTTTAATA
1 TTTTTAATA
37076 TTTTTAATA
1 TTTTTAATA
37085 TTTTT-ATA
1 TTTTTAATA
37093 TTT
1 TTT
37096 ATTTAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTTAATA
Found at i:37450 original size:11 final size:12
Alignment explanation
Indices: 37417--37459 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
37407 TGATTCATAT
*
37417 TTATTTAATTTAA
1 TTATTTTATTT-A
*
37430 TTATTATATTTA
1 TTATTTTATTTA
37442 -TATTTTATTTA
1 TTATTTTATTTA
37453 TTATTTT
1 TTATTTT
37460 TATAAATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 10 0.38
12 7 0.27
13 9 0.35
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATTTTATTTA
Found at i:37453 original size:20 final size:19
Alignment explanation
Indices: 37414--37463 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
37404 GATTGATTCA
37414 TATT-TATTTA-ATTTAAT
1 TATTATATTTATATTTAAT
*
37431 TATTATATTTATATTTTATT
1 TATTATATTTATA-TTTAAT
*
37451 TATTATTTTTATA
1 TATTATATTTATA
37464 AATTATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 1 0.04
20 17 0.61
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TATTATATTTATATTTAAT
Found at i:37469 original size:20 final size:20
Alignment explanation
Indices: 37430--37469 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37420 TTTAATTTAA
**
37430 TTATTATATTTATATTTTAT
1 TTATTATATTTATAAATTAT
*
37450 TTATTATTTTTATAAATTAT
1 TTATTATATTTATAAATTAT
37470 ATATATCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTATATTTATAAATTAT
Found at i:37568 original size:26 final size:26
Alignment explanation
Indices: 37515--37568 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
37505 TTATTTTTTA
* *
37515 ATATAAAAAATTTTATTATTAAATAT
1 ATATAAAAAATTATATAATTAAATAT
*
37541 ATATTAAAAATTAATATAATTAAA-AT
1 ATATAAAAAATT-ATATAATTAAATAT
37567 AT
1 AT
37569 TGTATCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATAAAAAATTATATAATTAAATAT
Found at i:37977 original size:18 final size:18
Alignment explanation
Indices: 37934--37977 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
37924 ATTTATTATA
* *
37934 ATTTAAATAATTAATATT
1 ATTTATATAATTAAAATT
* *
37952 GTTAATATAATTAAAATT
1 ATTTATATAATTAAAATT
37970 ATTTATAT
1 ATTTATAT
37978 TTAATTTTAA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTTATATAATTAAAATT
Found at i:38056 original size:19 final size:18
Alignment explanation
Indices: 38007--38065 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
37997 TATATAAATA
*
38007 TTAAT-ATAAAATAATTA
1 TTAATAATAAAATAATTT
* **
38024 TTAATATTTTAATATATTT
1 TTAATAATAAAATA-ATTT
38043 TTAATAATAAAATAATCTT
1 TTAATAATAAAATAAT-TT
38062 TTAA
1 TTAA
38066 ACCCTACAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 5 0.16
18 7 0.22
19 20 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAATAATAAAATAATTT
Found at i:41587 original size:16 final size:16
Alignment explanation
Indices: 41549--41599 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 16
41539 ATCGTAATTT
* *
41549 AAAAATAAAAATTAT-
1 AAAAATTAAATTTATA
*
41564 AAATATTAAATTTATA
1 AAAAATTAAATTTATA
*
41580 AAAAATT-ATTTTATA
1 AAAAATTAAATTTATA
41595 AAAAA
1 AAAAA
41600 AATTATATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 24 0.80
16 6 0.20
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAAATTAAATTTATA
Found at i:45588 original size:14 final size:14
Alignment explanation
Indices: 45569--45595 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45559 TAAAATTAAA
45569 ATTTTTTTAAAATT
1 ATTTTTTTAAAATT
45583 ATTTTTTTAAAAT
1 ATTTTTTTAAAAT
45596 AATAATATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTTTTTTAAAATT
Found at i:47775 original size:16 final size:16
Alignment explanation
Indices: 47724--47775 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
47714 AATGCAGGTC
*
47724 ATTTTAATTTTAAATT
1 ATTTTAATTTTGAATT
* * *
47740 ATTTTAAATTTGAGTC
1 ATTTTAATTTTGAATT
* *
47756 ATTTTTATTTTGATTT
1 ATTTTAATTTTGAATT
47772 ATTT
1 ATTT
47776 CAGATTTAGA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (16 bp):
ATTTTAATTTTGAATT
Found at i:48736 original size:32 final size:32
Alignment explanation
Indices: 48700--48766 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
48690 GTTGCATTAA
*
48700 TATTTAAAATACTATAATAATTATTAAAATAT
1 TATTTAAAATAATATAATAATTATTAAAATAT
* * *
48732 TATTTATATTAATATAATTATTATTAAAATAT
1 TATTTAAAATAATATAATAATTATTAAAATAT
48764 TAT
1 TAT
48767 CTTATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (32 bp):
TATTTAAAATAATATAATAATTATTAAAATAT
Found at i:48743 original size:17 final size:17
Alignment explanation
Indices: 48721--48774 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 17
48711 CTATAATAAT
48721 TATTAAAATATTATTTA
1 TATTAAAATATTATTTA
*
48738 TATT--AATA-TAATTA
1 TATTAAAATATTATTTA
48752 TTATTAAAATATTATCTTA
1 -TATTAAAATATTAT-TTA
48771 TATT
1 TATT
48775 TTTAAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 5 0.17
15 8 0.27
17 8 0.27
18 6 0.20
19 3 0.10
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTAAAATATTATTTA
Found at i:48843 original size:32 final size:31
Alignment explanation
Indices: 48712--48844 Score: 101
Period size: 32 Copynumber: 4.0 Consensus size: 31
48702 TTTAAAATAC
48712 TATAATAATTATTAAAATATTATTTATATT-AA
1 TATAA-AA-TATTAAAATATTATTTATATTAAA
*
48744 TATAATTATTATTAAAATATTATCTTATATTTTTAAA
1 TATAA--AATATTAAAATATTAT-TTATA---TTAAA
* * *
48781 TA-AAAATATTAACAAAAATATTAATTATTAAA
1 TATAAAATATTAA-AATATTATTTA-TATTAAA
48813 TATTAAAATATTAAAA-ATTATTTATCATTAAA
1 TA-TAAAATATTAAAATATTATTTAT-ATTAAA
48845 CATATAATTT
Statistics
Matches: 83, Mismatches: 7, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
31 1 0.01
32 38 0.46
33 9 0.11
34 19 0.23
35 8 0.10
36 4 0.05
37 4 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (31 bp):
TATAAAATATTAAAATATTATTTATATTAAA
Found at i:48978 original size:20 final size:20
Alignment explanation
Indices: 48953--48997 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
48943 TTAAAACATA
48953 ATTAT-ATAAATATTTAAAAT
1 ATTATAATAAATA-TTAAAAT
*
48973 ATTATAATAATTATTAAAAT
1 ATTATAATAAATATTAAAAT
48993 ATTAT
1 ATTAT
48998 TTTTTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATAATAAATATTAAAAT
Found at i:49031 original size:24 final size:24
Alignment explanation
Indices: 48967--49035 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
48957 TATAAATATT
**
48967 TAAAATATTATAATAATTATTAAA
1 TAAAATATTATTTTAATTATTAAA
* * * *
48991 -ATATTATTTTTTATAATTTTTAAA
1 TAAAATATTATTT-TAATTATTAAA
49015 TAAAATATTATTTTAA-TATTA
1 TAAAATATTATTTTAATTATTA
49036 CACAATATTT
Statistics
Matches: 33, Mismatches: 10, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
23 11 0.33
24 13 0.39
25 9 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TAAAATATTATTTTAATTATTAAA
Found at i:49137 original size:38 final size:36
Alignment explanation
Indices: 49065--49139 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 36
49055 GTTACAATTT
*
49065 ATTATTAAAATAATAAATTATATTATTATTTTATTA
1 ATTATTAAAATAATAAATTATATTATTATATTATTA
*
49101 ATTATTATAAATAAATAATTTCATATTA-TATATTATTA
1 ATTATTA-AAAT-AATAAATT-ATATTATTATATTATTA
49139 A
1 A
49140 AATATAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 7 0.21
37 4 0.12
38 17 0.50
39 6 0.18
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (36 bp):
ATTATTAAAATAATAAATTATATTATTATATTATTA
Found at i:49150 original size:24 final size:24
Alignment explanation
Indices: 49123--49214 Score: 73
Period size: 31 Copynumber: 3.5 Consensus size: 24
49113 AAATAATTTC
49123 ATATTATATATTATTAAAATATAA
1 ATATTATATATTATTAAAATATAA
49147 ATATGTATATTTAATAATATTCAAAATATAA
1 ATAT-TATA--T-AT--TATT-AAAATATAA
49178 ATATTA-ATA--ATTAAAATATTAAA
1 ATATTATATATTATTAAAATA-T-AA
49201 ATAATTATATATTA
1 AT-ATTATATATTA
49215 CTATTTTATT
Statistics
Matches: 55, Mismatches: 0, Indels: 23
0.71 0.00 0.29
Matches are distributed among these distances:
21 6 0.11
22 4 0.07
23 4 0.07
24 8 0.15
25 7 0.13
26 1 0.02
27 3 0.05
28 2 0.04
29 1 0.02
30 6 0.11
31 13 0.24
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (24 bp):
ATATTATATATTATTAAAATATAA
Found at i:49175 original size:31 final size:29
Alignment explanation
Indices: 49134--49203 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 29
49124 TATTATATAT
*
49134 TATTAAAATATAAATATGT-ATATTTAATAA
1 TATTAAAATATAAATAT-TAATAATTAA-AA
49164 TATTCAAAATATAAATATTAATAATTAAAA
1 TATT-AAAATATAAATATTAATAATTAAAA
49194 TATTAAAATA
1 TATTAAAATA
49204 ATTATATATT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
29 6 0.16
30 11 0.30
31 20 0.54
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (29 bp):
TATTAAAATATAAATATTAATAATTAAAA
Found at i:49182 original size:15 final size:15
Alignment explanation
Indices: 49134--49203 Score: 58
Period size: 15 Copynumber: 4.7 Consensus size: 15
49124 TATTATATAT
49134 TATTAAAATAT-AAA
1 TATTAAAATATAAAA
* *
49148 TATGT-ATATTTAATAA
1 TAT-TAAAATATAA-AA
49164 TATTCAAAATAT-AAA
1 TATT-AAAATATAAAA
49179 TATTAATAAT-TAAAA
1 TATTAA-AATATAAAA
49194 TATTAAAATA
1 TATTAAAATA
49204 ATTATATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
14 13 0.30
15 21 0.48
16 6 0.14
17 4 0.09
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (15 bp):
TATTAAAATATAAAA
Found at i:50571 original size:41 final size:41
Alignment explanation
Indices: 50526--50606 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
50516 TTGATACATT
* *
50526 CATATAATAGTATCATA-TTTATTTTATTTTTAATATTATAA
1 CATATAATA-TATCATATTTTAATTAATTTTTAATATTATAA
** *
50567 CATATTTTATATCATATTTTAATTAATTTTTTATATTATA
1 CATATAATATATCATATTTTAATTAATTTTTAATATTATA
50607 TAATAATATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 7 0.21
41 27 0.79
ACGTcount: A:0.37, C:0.05, G:0.01, T:0.57
Consensus pattern (41 bp):
CATATAATATATCATATTTTAATTAATTTTTAATATTATAA
Found at i:51221 original size:22 final size:22
Alignment explanation
Indices: 51193--51238 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
51183 AATTACTTAG
*
51193 ATAACATAAATAT-ATTTATTTT
1 ATAACAT-AATATGATATATTTT
51215 ATAACATAATATGATATATTTT
1 ATAACATAATATGATATATTTT
51237 AT
1 AT
51239 TATTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAACATAATATGATATATTTT
Found at i:51309 original size:28 final size:28
Alignment explanation
Indices: 51273--51343 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
51263 ATATCATATA
51273 TAATATAATATATAAATTAATTATATTT
1 TAATATAATATATAAATTAATTATATTT
** * *
51301 TAATATAATATATGGATTTATTGTATTT
1 TAATATAATATATAAATTAATTATATTT
51329 TAAATATAAT-TATAA
1 T-AATATAATATATAA
51344 TGATATAGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
28 28 0.78
29 8 0.22
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.49
Consensus pattern (28 bp):
TAATATAATATATAAATTAATTATATTT
Found at i:53751 original size:22 final size:22
Alignment explanation
Indices: 53708--53751 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
53698 AATTAGTGTC
*
53708 AAATTAAAATAAATCTATTTAT
1 AAATTAAAATAAATCTAATTAT
* * *
53730 AAATTAAATTACATTTAATTAT
1 AAATTAAAATAAATCTAATTAT
53752 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATTAAAATAAATCTAATTAT
Found at i:53885 original size:28 final size:28
Alignment explanation
Indices: 53831--53890 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 28
53821 GATTAGATTT
*
53831 TAAAAATATTTTAAAATTAAAATTATC-
1 TAAAAATATTTTAAAATTAAAAATATCA
*
53858 TAAAAATTATTTT-TAATTAAATAATATCA
1 TAAAAA-TATTTTAAAATTAAA-AATATCA
53887 TAAA
1 TAAA
53891 TTGGACCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 13 0.46
28 11 0.39
29 4 0.14
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (28 bp):
TAAAAATATTTTAAAATTAAAAATATCA
Found at i:62154 original size:92 final size:92
Alignment explanation
Indices: 61993--62178 Score: 363
Period size: 92 Copynumber: 2.0 Consensus size: 92
61983 TACAGCTTGA
*
61993 AAGAACTTATATTTAAAACTGAACCTCTTTTTGTAGGACATTGCAGGCATCTGTATGTTAATATT
1 AAGAACTTATATTTAAAACTGAACCTCTTTTTGTAGGACATTGCAGGCATCTGTATGTTAATATC
62058 CCAAGAACTAAGCTGGATTTTTCTTAC
66 CCAAGAACTAAGCTGGATTTTTCTTAC
62085 AAGAACTTATATTTAAAACTGAACCTCTTTTTGTAGGACATTGCAGGCATCTGTATGTTAATATC
1 AAGAACTTATATTTAAAACTGAACCTCTTTTTGTAGGACATTGCAGGCATCTGTATGTTAATATC
62150 CCAAGAACTAAGCTGGATTTTTCTTAC
66 CCAAGAACTAAGCTGGATTTTTCTTAC
62177 AA
1 AA
62179 AATTTCCATC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (92 bp):
AAGAACTTATATTTAAAACTGAACCTCTTTTTGTAGGACATTGCAGGCATCTGTATGTTAATATC
CCAAGAACTAAGCTGGATTTTTCTTAC
Found at i:71459 original size:14 final size:14
Alignment explanation
Indices: 71442--71472 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
71432 CTTACAATTT
71442 TTATATTTAATAAA
1 TTATATTTAATAAA
*
71456 TTATATTTATTAAA
1 TTATATTTAATAAA
71470 TTA
1 TTA
71473 AAAAATCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATATTTAATAAA
Found at i:71463 original size:22 final size:21
Alignment explanation
Indices: 71438--71490 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
71428 ATCACTTACA
* * *
71438 ATTTTTATATTTAATAAATTAT
1 ATTTTTA-AATTAAAAAATCAT
71460 ATTTATTAAATTAAAAAATCAT
1 ATTT-TTAAATTAAAAAATCAT
71482 ATATTTTAA
1 AT-TTTTAA
71491 CCAATACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTTTAAATTAAAAAATCAT
Found at i:72215 original size:21 final size:21
Alignment explanation
Indices: 72175--72215 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72165 TATTGATATT
*
72175 ATAAAATTAAAAAATTTAATA
1 ATAAAATTAAAAAATATAATA
72196 ATAAAA-TAAAAAATGATAAT
1 ATAAAATTAAAAAAT-ATAAT
72216 TTTTTTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAAAATTAAAAAATATAATA
Found at i:72323 original size:29 final size:30
Alignment explanation
Indices: 72292--72350 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
72282 TTGAAGATTA
*
72292 TTTTAAGAGACGATTTTTTA-TCTTTAAAAT
1 TTTTAA-AGACAATTTTTTATTCTTTAAAAT
* *
72322 TTTTAAAGATAATTTTTTATTTTTTAAAA
1 TTTTAAAGACAATTTTTTATTCTTTAAAA
72351 ATAATTATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (30 bp):
TTTTAAAGACAATTTTTTATTCTTTAAAAT
Found at i:73351 original size:12 final size:11
Alignment explanation
Indices: 73335--73370 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
73325 ACTTAAAAAT
73335 TTTAAATTAAA
1 TTTAAATTAAA
73346 TATTAAATTAAA
1 T-TTAAATTAAA
*
73358 TTTAAATTTAA
1 TTTAAATTAAA
73369 TT
1 TT
73371 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTAAATTAAA
Found at i:73358 original size:17 final size:17
Alignment explanation
Indices: 73336--73368 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73326 CTTAAAAATT
73336 TTAAA-TTAAATATTAAA
1 TTAAATTTAAAT-TTAAA
73353 TTAAATTTAAATTTAA
1 TTAAATTTAAATTTAA
73369 TTATTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAATTTAAATTTAAA
Found at i:74659 original size:28 final size:25
Alignment explanation
Indices: 74621--74671 Score: 66
Period size: 28 Copynumber: 1.9 Consensus size: 25
74611 TTTGTTTGAA
74621 TTTAATATTTTGGATAAAAATATTTACC
1 TTTAATATTTT--ATAAAAA-ATTTACC
*
74649 TTTAATTTTTTATAAAAAATTTA
1 TTTAATATTTTATAAAAAATTTA
74672 TTTATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 7 0.32
28 10 0.45
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (25 bp):
TTTAATATTTTATAAAAAATTTACC
Found at i:74713 original size:29 final size:29
Alignment explanation
Indices: 74641--74726 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 29
74631 TGGATAAAAA
* *
74641 TATTTACCTTTAATTTTTTATAAAAAATT
1 TATTTACCTTTAATGTTTGATAAAAAATT
** *
74670 TATTTATTTTTTTAATGTTTGA-AAAATATT
1 TATTTA--CCTTTAATGTTTGATAAAAAATT
*
74700 TATTTACCTCTTAAAGTTTGATAAAAA
1 TATTTACCT-TTAATGTTTGATAAAAA
74727 CTGTACTAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
28 1 0.02
29 16 0.36
30 17 0.39
31 10 0.23
ACGTcount: A:0.37, C:0.06, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTTACCTTTAATGTTTGATAAAAAATT
Found at i:77160 original size:14 final size:14
Alignment explanation
Indices: 77119--77162 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
77109 TTTTTTTTAA
77119 ATAAATTATTTTCTT
1 ATAAATTATTTT-TT
*
77134 A-AAATTATATTTT
1 ATAAATTATTTTTT
*
77147 ATAAAATATTTTTT
1 ATAAATTATTTTTT
77161 AT
1 AT
77163 GAAACTGCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 3 0.12
14 21 0.84
15 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
ATAAATTATTTTTT
Found at i:77840 original size:30 final size:30
Alignment explanation
Indices: 77786--77849 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
77776 TTTATTAATG
77786 ATATATAATTTTATATTATTAATATATTAA
1 ATATATAATTTTATATTATTAATATATTAA
* * *
77816 ATATA-AATTTTTTATTTTTAA-ATA-TAT
1 ATATATAATTTTATATTATTAATATATTAA
77843 ATATATA
1 ATATATA
77850 CATACAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 7 0.23
28 4 0.13
29 14 0.47
30 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (30 bp):
ATATATAATTTTATATTATTAATATATTAA
Found at i:84170 original size:3 final size:3
Alignment explanation
Indices: 84162--84216 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
84152 GCATGTTATG
84162 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84210 TTA TTA T
1 TTA TTA T
84217 AAAGAGTACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:94885 original size:30 final size:28
Alignment explanation
Indices: 94849--94905 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
94839 TAATATTAAG
94849 AAATTATAT-TATATTATTTTATTAAAATAA
1 AAATTATATATAT-TTA-TTT-TTAAAATAA
94879 AAATTATATATATTTATTTTTAAAATA
1 AAATTATATATATTTATTTTTAAAATA
94906 TTTTAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 8 0.31
29 3 0.12
30 12 0.46
31 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
AAATTATATATATTTATTTTTAAAATAA
Found at i:94923 original size:60 final size:60
Alignment explanation
Indices: 94859--94971 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 60
94849 AAATTATATT
* *
94859 ATATTATTTTATTAAAATAAAAATTATATATATTTAT-TTTTA-AAATATTTTAATAAAATA
1 ATATTATTTAATT-AAATAAAAA-TATATAAATTTATATTTTATAAATATTTTAATAAAATA
* * * *
94919 ATATTATTTAATTTATTAATAATATATAAATTTATATTTTATTAATATTTTAA
1 ATATTATTTAATTAAATAAAAATATATAAATTTATATTTTATAAATATTTTAA
94972 ATTAAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 12 0.27
59 11 0.24
60 22 0.49
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (60 bp):
ATATTATTTAATTAAATAAAAATATATAAATTTATATTTTATAAATATTTTAATAAAATA
Found at i:96701 original size:2 final size:2
Alignment explanation
Indices: 96664--96689 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
96654 ATCCCAAAAC
96664 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
96690 AAGTGTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101097 original size:2 final size:2
Alignment explanation
Indices: 101090--101124 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
101080 TTTGAAGTTA
101090 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
101125 AAGAGGTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:104658 original size:30 final size:28
Alignment explanation
Indices: 104622--104678 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
104612 AGCAAAGCAT
104622 TTTATA-TATTCCAAATCGATTTTATTTTTA
1 TTTATATTA-TCCAAA--GATTTTATTTTTA
*
104652 TTTATATTATCTAAAGATTTTATTTTT
1 TTTATATTATCCAAAGATTTTATTTTT
104679 TAAAAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 12 0.48
30 11 0.44
31 2 0.08
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.60
Consensus pattern (28 bp):
TTTATATTATCCAAAGATTTTATTTTTA
Found at i:105261 original size:13 final size:13
Alignment explanation
Indices: 105226--105274 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
105216 AACACGATAT
105226 AAAA-AAATA-AA
1 AAAATAAATATAA
*
105237 AAAATTAATATAA
1 AAAATAAATATAA
*
105250 ATAATAAATATAA
1 AAAATAAATATAA
105263 TAAAA-AAATATA
1 -AAAATAAATATA
105275 TATAAATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 4 0.13
12 4 0.13
13 20 0.65
14 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATAAATATAA
Found at i:106110 original size:23 final size:23
Alignment explanation
Indices: 106083--106127 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
106073 TTTAATCCGC
* *
106083 TATTAGATTTGATAATCTATGTG
1 TATTAGATTTAATAATATATGTG
*
106106 TATTATATTTAATAATATATGT
1 TATTAGATTTAATAATATATGT
106128 ATATATATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (23 bp):
TATTAGATTTAATAATATATGTG
Found at i:106892 original size:2 final size:2
Alignment explanation
Indices: 106885--106918 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
106875 TATTTTTGTA
106885 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106919 GTCAGATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107118 original size:2 final size:2
Alignment explanation
Indices: 107111--107138 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
107101 GATCAAACTC
107111 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
107139 TCTTGTCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:107840 original size:17 final size:17
Alignment explanation
Indices: 107818--107852 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
107808 AGACCTTTAG
107818 AAAGATTCTTCTTTTTT
1 AAAGATTCTTCTTTTTT
107835 AAAGATTCTTCTTTTTT
1 AAAGATTCTTCTTTTTT
107852 A
1 A
107853 TTATTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (17 bp):
AAAGATTCTTCTTTTTT
Found at i:109232 original size:25 final size:25
Alignment explanation
Indices: 109204--109276 Score: 101
Period size: 25 Copynumber: 2.8 Consensus size: 25
109194 TCTTAATTTT
*
109204 TAAACTTATTTTATTTTAGTTAAAA
1 TAAACTTATTTTATTTTAATTAAAA
*
109229 TAAAGTTATTTTATTTTAATTAAAA
1 TAAACTTATTTTATTTTAATTAAAA
*
109254 TAAATTTATTTTTTATTTTAATT
1 TAAACTTA--TTTTATTTTAATT
109277 TCATCAATCA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 30 0.70
27 13 0.30
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (25 bp):
TAAACTTATTTTATTTTAATTAAAA
Found at i:109531 original size:13 final size:13
Alignment explanation
Indices: 109513--109537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109503 AAATTGTAAT
109513 AAAAATTTTTTAA
1 AAAAATTTTTTAA
109526 AAAAATTTTTTA
1 AAAAATTTTTTA
109538 GGGTTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AAAAATTTTTTAA
Found at i:110031 original size:14 final size:14
Alignment explanation
Indices: 110007--110040 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
109997 ATGTATTACT
110007 TATAA-TAATTAAG
1 TATAATTAATTAAG
*
110020 TATAATTAATTAAT
1 TATAATTAATTAAG
110034 TATAATT
1 TATAATT
110041 TTAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TATAATTAATTAAG
Found at i:111416 original size:30 final size:27
Alignment explanation
Indices: 111374--111460 Score: 68
Period size: 30 Copynumber: 2.9 Consensus size: 27
111364 AATAAATACC
111374 TAATTTTCAATTTACATCTAAATAAATTA
1 TAATTTT-AATTTA-ATCTAAATAAATTA
* *
111403 TTAATCTTTAATTTATTTTCAAATAAACTTA
1 -TAAT-TTTAATTTAATCT-AAATAAA-TTA
111434 TAATTTTTAATTT-ATACATAAATAAAT
1 TAA-TTTTAATTTAAT-C-TAAATAAAT
111461 CTTAATATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
29 4 0.09
30 35 0.74
31 8 0.17
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (27 bp):
TAATTTTAATTTAATCTAAATAAATTA
Found at i:112537 original size:33 final size:34
Alignment explanation
Indices: 112503--112584 Score: 103
Period size: 33 Copynumber: 2.4 Consensus size: 34
112493 AGATAATGAT
*
112503 AATTTTTTTTTTAAATTTAACAGTATTGAAGATA
1 AATTTTATTTTTAAATTTAACAGTATTGAAGATA
** * * *
112537 AATGATATTTTT-ATTTTAATAGTATTGACGATA
1 AATTTTATTTTTAAATTTAACAGTATTGAAGATA
112570 AATTTTATTTTTAAA
1 AATTTTATTTTTAAA
112585 AGTTTTAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
33 28 0.74
34 10 0.26
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (34 bp):
AATTTTATTTTTAAATTTAACAGTATTGAAGATA
Found at i:114527 original size:5 final size:5
Alignment explanation
Indices: 114517--114548 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
114507 TTCAATCATA
*
114517 AAAAT AAAAT AAAAT AAAAT AAAAC AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
114549 CAAAACAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:117907 original size:20 final size:20
Alignment explanation
Indices: 117870--117906 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
117860 TCAGTATTAT
*
117870 TAAATATTTTATTAAAAATA
1 TAAATATTTTATAAAAAATA
117890 TAAATA-TTTATAAAAAA
1 TAAATATTTTATAAAAAA
117907 ACATTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAATATTTTATAAAAAATA
Found at i:123287 original size:16 final size:16
Alignment explanation
Indices: 123266--123315 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
123256 ATTATTATAA
*
123266 AAATTTATTTTAAATC
1 AAATTTAATTTAAATC
*
123282 AAATTTAATTTAAATT
1 AAATTTAATTTAAATC
*
123298 AAA-TTAA-TTAAATT
1 AAATTTAATTTAAATC
123312 AAAT
1 AAAT
123316 AAATAATCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
14 10 0.32
15 4 0.13
16 17 0.55
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
AAATTTAATTTAAATC
Found at i:125651 original size:17 final size:17
Alignment explanation
Indices: 125621--125682 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
125611 TTACAAATAA
125621 AAATATAATATAAATTATT
1 AAATAT-AT-TAAATTATT
125640 AAATATATTAAAATTA-T
1 AAATATATT-AAATTATT
* *
125657 AAATATAATATATGTATT
1 AAATATATTAAAT-TATT
*
125675 AAACATAT
1 AAATATAT
125683 CTTGCTTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 3 0.08
17 12 0.33
18 15 0.42
19 6 0.17
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATATATTAAATTATT
Found at i:125815 original size:19 final size:19
Alignment explanation
Indices: 125763--125816 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
125753 ATTTTAAAAA
125763 ATATTAATATGTTAT-TTTT
1 ATATTAATAT-TTATATTTT
*
125782 ATATTAATATATATATTTT
1 ATATTAATATTTATATTTT
125801 ATAATTAA-ATTTATAT
1 AT-ATTAATATTTATAT
125817 AAAAATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 3 0.10
19 23 0.74
20 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
ATATTAATATTTATATTTT
Found at i:127231 original size:4 final size:4
Alignment explanation
Indices: 127199--127245 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
127189 ATGTCCCTGA
* * * *
127199 ATAT -TAT ATTT ATAC ATAT ACAT ACAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
127246 CGTCTCTTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (4 bp):
ATAT
Found at i:127239 original size:10 final size:10
Alignment explanation
Indices: 127199--127245 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
127189 ATGTCCCTGA
127199 ATAT-TATAT
1 ATATATATAT
* *
127208 TTATACATAT
1 ATATATATAT
* *
127218 ACATACATAT
1 ATATATATAT
127228 ATATATATAT
1 ATATATATAT
127238 ATATATAT
1 ATATATAT
127246 CGTCTCTTGA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
9 3 0.10
10 28 0.90
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (10 bp):
ATATATATAT
Found at i:128631 original size:14 final size:15
Alignment explanation
Indices: 128606--128635 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
128596 CATGCCTTGC
128606 TGGATGGAAGACCTT
1 TGGATGGAAGACCTT
128621 TGGAT-GAAGACCTT
1 TGGATGGAAGACCTT
128635 T
1 T
128636 CAAACTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (15 bp):
TGGATGGAAGACCTT
Found at i:134587 original size:73 final size:72
Alignment explanation
Indices: 134417--134659 Score: 308
Period size: 73 Copynumber: 3.3 Consensus size: 72
134407 ATTATTAATA
* * * * *
134417 TCATATATATATATATATATTTATTTAAATTTTATCTAATCCGATAATTTAAACTTA-TTAATTC
1 TCATAAATAT-TATATATATTTATTTAAACTTTATCCAATCCGATAATTTAAATTTATTTAAATC
** *
134481 GTTTGTAT
65 CATTATAT
* *
134489 TCATAAATATTATTTATATTTATTTAAACTTTATCCAATCCGATAATTCAAATTTATTTAAATCC
1 TCATAAATATTATATATATTTATTTAAACTTTATCCAATCCGATAATTTAAATTTATTTAAATCC
*
134554 ATTCATCT
66 ATT-ATAT
* * * *
134562 TCATAAATATTATTTATATTTATTTAAACTCTATCCAACCCGATAATTTAAATTTATTTAAATCT
1 TCATAAATATTATATATATTTATTTAAACTTTATCCAATCCGATAATTTAAATTTATTTAAATCC
134627 ACTTATAT
66 A-TTATAT
*
134635 TTATAAATATTATATATATTTATTT
1 TCATAAATATTATATATATTTATTT
134660 CGATAATTTA
Statistics
Matches: 150, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
71 41 0.27
72 17 0.11
73 90 0.60
74 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.02, T:0.49
Consensus pattern (72 bp):
TCATAAATATTATATATATTTATTTAAACTTTATCCAATCCGATAATTTAAATTTATTTAAATCC
ATTATAT
Found at i:134617 original size:34 final size:33
Alignment explanation
Indices: 134500--134627 Score: 96
Period size: 34 Copynumber: 3.6 Consensus size: 33
134490 CATAAATATT
* * *
134500 ATTTATATTTATTTAAACTTTATCCAATCCGATA
1 ATTTAAATTTATTTAAA-TCTATCCAACCCGATA
* * * * *
134534 ATTCAAATTTATTTAAATCCATTCATCTTC-ATAA
1 ATTTAAATTTATTTAAATCTATCCAAC-CCGAT-A
134568 ATATTATTTATATTTATTTAAACTCTATCCAACCCGATA
1 AT-TTA---A-ATTTATTTAAA-TCTATCCAACCCGATA
134607 ATTTAAATTTATTTAAATCTA
1 ATTTAAATTTATTTAAATCTA
134628 CTTATATTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 19
0.69 0.12 0.18
Matches are distributed among these distances:
33 11 0.15
34 30 0.42
35 3 0.04
38 4 0.06
39 15 0.21
40 9 0.12
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.46
Consensus pattern (33 bp):
ATTTAAATTTATTTAAATCTATCCAACCCGATA
Found at i:140049 original size:13 final size:13
Alignment explanation
Indices: 140008--140057 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 13
139998 TAATTATTTT
*
140008 TTATATTAAAAAA
1 TTATATTAATAAA
140021 TT-TATTAATAAA
1 TTATATTAATAAA
* *
140033 TTATATTATTAAT
1 TTATATTAATAAA
140046 TTAT-TTAA-AAA
1 TTATATTAATAAA
140057 T
1 T
140058 AGATCAATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 3 0.10
12 14 0.45
13 14 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTATATTAATAAA
Found at i:143064 original size:14 final size:14
Alignment explanation
Indices: 143022--143064 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
143012 TACAAAGTTT
*
143022 AAAAGGACATAAAA
1 AAAAGGAAATAAAA
*
143036 AAAAGGAAAAAAAA
1 AAAAGGAAATAAAA
143050 AAAAGGAAATTAAAA
1 AAAAGGAAA-TAAAA
143065 CCGAAAGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 21 0.84
15 4 0.16
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.07
Consensus pattern (14 bp):
AAAAGGAAATAAAA
Found at i:151675 original size:2 final size:2
Alignment explanation
Indices: 151668--151705 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
151658 GCCTTTGAGA
151668 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
151706 GTACGTAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:151838 original size:2 final size:2
Alignment explanation
Indices: 151833--151861 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
151823 AGAAAAAAAA
151833 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
151862 AGAGCAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:152276 original size:2 final size:2
Alignment explanation
Indices: 152227--152256 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
152217 GTATTGAAAT
152227 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
152257 TTATGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:154386 original size:13 final size:13
Alignment explanation
Indices: 154368--154392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
154358 ACTTTGAAGT
154368 AATTAAATTATTA
1 AATTAAATTATTA
154381 AATTAAATTATT
1 AATTAAATTATT
154393 CATTTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTAAATTATTA
Found at i:154645 original size:28 final size:28
Alignment explanation
Indices: 154614--154683 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
154604 TTAGCCTTCA
*
154614 TTATTAATTAAATAATATTTTTTTAT-AT
1 TTATTAATTAAATAA-ATTTTTTCATAAT
*
154642 TTA-TAATCATAATAAATTTTTTCATAAT
1 TTATTAATTA-AATAAATTTTTTCATAAT
*
154670 TCATTAATTAAATA
1 TTATTAATTAAATA
154684 TTACTAACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 14 0.40
28 16 0.46
29 5 0.14
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (28 bp):
TTATTAATTAAATAAATTTTTTCATAAT
Found at i:155305 original size:29 final size:28
Alignment explanation
Indices: 155265--155335 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
155255 CCATCAGGGA
*
155265 TTTAAATAATTATTTTATAATTTTAAT-TT
1 TTTAATTAATTATTTTATAA--TTAATATT
*
155294 TTTAATTCATTATTTTTATAATTAATATT
1 TTTAATTAATTA-TTTTATAATTAATATT
155323 TTTAATTAATTAT
1 TTTAATTAATTAT
155336 AATAATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 6 0.16
29 23 0.62
30 8 0.22
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTAATTAATTATTTTATAATTAATATT
Found at i:155334 original size:17 final size:15
Alignment explanation
Indices: 155277--155326 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
155267 TAAATAATTA
*
155277 TTTTATAATT-TTAAT
1 TTTTATAATTAAT-AT
*
155292 TTTT-TAATTCATTAT
1 TTTTATAATT-AATAT
155307 TTTTATAATTAATAT
1 TTTTATAATTAATAT
155322 TTTTA
1 TTTTA
155327 ATTAATTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 5 0.16
15 19 0.61
16 7 0.23
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTATAATTAATAT
Found at i:155350 original size:19 final size:22
Alignment explanation
Indices: 155309--155350 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
155299 TTCATTATTT
155309 TTATAATTAATATTTTTAATTAA
1 TTATAATTAATATTTTT-ATTAA
155332 TTATAA-TAAT-TTTTT-TTAA
1 TTATAATTAATATTTTTATTAA
155351 AGCCAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.21
21 5 0.26
22 4 0.21
23 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATAATTAATATTTTTATTAA
Found at i:156136 original size:111 final size:112
Alignment explanation
Indices: 156016--156237 Score: 356
Period size: 111 Copynumber: 2.0 Consensus size: 112
156006 ATTTTCAAAA
*
156016 TATAAGAATTAAAATATTAAATATAATAACACACGAACTAAAATGCTCGTACACGGATTTTTAGT
1 TATAAGAATTAAAATATTAAATATAATAACACACAAACTAAAATGCTCGTACACGGATTTTTAGT
*
156081 AAACTTTTACCT-AAAAATGATAAATGAATTAAAAAAGAAATATAAG
66 AAACTTTTACCTAAAAAATAATAAATGAATTAAAAAAGAAATATAAG
* ** * * *
156127 TATAAGAATTAAAATATTAAATGTAATAGTACATAAATTAAAATGCTCGTACATGGATTTTTAGT
1 TATAAGAATTAAAATATTAAATATAATAACACACAAACTAAAATGCTCGTACACGGATTTTTAGT
*
156192 AAACTTTTACCTAAAAAATAATAAATGAATTGAAAAAGAAATATAA
66 AAACTTTTACCTAAAAAATAATAAATGAATTAAAAAAGAAATATAA
156238 TTTATTTTTT
Statistics
Matches: 101, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
111 70 0.69
112 31 0.31
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (112 bp):
TATAAGAATTAAAATATTAAATATAATAACACACAAACTAAAATGCTCGTACACGGATTTTTAGT
AAACTTTTACCTAAAAAATAATAAATGAATTAAAAAAGAAATATAAG
Found at i:157431 original size:2 final size:2
Alignment explanation
Indices: 157424--157457 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
157414 CAAAACTATT
157424 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
157458 AATTCCATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:157837 original size:37 final size:37
Alignment explanation
Indices: 157787--157861 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
157777 ATCAGATTGT
*
157787 AAAATTTTGGGCTTATGTACCGTTGGAAGAGACAACA
1 AAAATTTTGGGCTTATGTACCGTTGGAAGAGAAAACA
157824 AAAATTTTGGGCTTATGTACCGTTGGAAGAGAAAACA
1 AAAATTTTGGGCTTATGTACCGTTGGAAGAGAAAACA
157861 A
1 A
157862 CTTTGGTCTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (37 bp):
AAAATTTTGGGCTTATGTACCGTTGGAAGAGAAAACA
Found at i:160309 original size:2 final size:2
Alignment explanation
Indices: 160302--160333 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
160292 ACTCTAAAAC
160302 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
160334 ACAAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.