genome.fa.s1772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1772
Parameters: 2 7 7 80 10 50 1000
Length:  62101

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896--922	10	2.7	10	100	0	54	0	0	22	77	0.76
10607--10692	1	86.0	1	74	0	55	84	9	2	3	0.81
10630--10690	11	5.5	11	80	5	70	85	13	0	1	0.68
10637--10690	17	3.4	16	82	12	67	87	11	0	1	0.63
10605--10689	28	3.0	28	83	11	86	82	11	2	3	0.89
10609--10692	38	2.2	38	85	6	107	84	9	2	3	0.83
10609--10692	21	4.4	18	76	13	71	84	9	2	3	0.83
12132--12428	30	10.1	30	75	10	202	28	30	16	24	1.96
12256--12424	85	2.0	86	82	4	207	31	30	17	20	1.96
12415--12626	52	4.2	52	74	13	190	24	25	16	33	1.96
12430--12519	43	2.1	43	91	0	144	26	25	17	30	1.98
12473--12626	55	2.9	54	82	2	186	24	23	16	35	1.94
13544--13568	13	1.9	13	100	0	50	32	16	16	36	1.90
13557--13705	52	2.9	51	90	4	235	33	19	16	30	1.94
23593--23656	33	1.9	32	84	12	85	37	17	10	34	1.85
23618--23655	20	1.9	20	94	0	67	39	18	10	31	1.85
23610--23635	13	2.0	13	100	0	52	38	15	15	30	1.88
23685--23742	19	3.0	19	85	12	82	36	18	13	31	1.90
23983--24021	20	2.0	20	85	14	55	30	10	7	51	1.64
26057--26103	22	2.2	23	85	14	66	46	0	21	31	1.51
28949--29470	259	2.0	259	98	0	1008	33	17	12	36	1.88
31384--31448	19	3.8	18	75	24	77	32	12	16	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31386--31453	32	2.1	32	97	0	127	33	11	17	36	1.86
31405--31429	13	1.9	13	100	0	50	36	16	16	32	1.90
31524--31652	52	2.5	52	94	0	222	35	17	17	29	1.93
36233--36295	32	1.9	33	87	9	94	34	14	15	34	1.88
36327--36381	20	2.8	20	91	2	85	36	18	12	32	1.88
36367--36393	13	2.1	13	100	0	54	40	14	14	29	1.86
38090--38120	14	2.2	14	94	0	53	38	6	25	29	1.81
38110--38198	10	9.0	10	75	11	67	41	5	25	26	1.77
38117--38150	17	2.0	17	94	0	59	41	2	29	26	1.70
38221--38257	19	1.9	19	94	0	65	35	10	10	43	1.75
38222--38358	53	2.6	53	94	1	238	27	17	17	37	1.92
38328--38398	20	3.5	20	77	11	74	29	14	16	39	1.88
38437--38477	21	2.0	21	85	9	57	39	9	12	39	1.76
39923--39966	17	2.6	17	82	17	56	54	0	0	45	0.99
40779--40808	2	15.0	2	100	0	60	50	0	0	50	1.00
44343--44400	30	1.9	30	96	0	107	34	13	22	29	1.93
44347--44411	30	2.2	30	85	0	85	36	13	18	30	1.90
46963--46989	2	13.5	2	100	0	54	48	0	0	51	1.00
47253--47295	3	14.3	3	100	0	86	67	0	0	32	0.91
50121--50160	22	1.9	22	90	10	66	60	0	0	40	0.97
50139--50190	27	1.9	27	84	7	70	53	0	0	46	1.00
50709--50748	21	1.9	21	100	0	80	22	12	15	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50711--50758	21	2.3	21	88	0	69	22	12	12	52	1.73
52754--52930	79	2.2	79	83	2	221	31	15	26	26	1.96
54031--54076	18	2.4	20	85	14	78	36	23	17	21	1.94
54037--54078	18	2.3	18	100	0	84	42	23	14	19	1.87
55249--55342	20	4.7	20	85	2	109	41	12	18	27	1.86
55678--55716	15	2.7	14	80	7	51	66	5	0	28	1.12
56916--56956	21	1.9	22	90	5	66	43	2	4	48	1.37
57816--57859	11	4.2	10	81	18	54	59	2	0	38	1.10
57817--57858	20	2.0	20	86	13	57	57	2	0	40	1.12
60858--60888	1	31.0	1	100	0	62	0	0	100	0	0.00

Tables:   1

The End!