genome.fa.s1775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1775
Parameters: 2 7 7 80 10 50 1000
Length:  71486

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1618--1643	13	2.0	13	100	0	52	38	15	15	30	1.88
3711--3741	15	2.1	15	93	0	53	12	22	16	48	1.80
5543--5587	21	2.1	21	84	8	56	22	20	4	53	1.63
7813--7838	13	2.0	13	100	0	52	30	15	15	38	1.88
7793--7856	32	2.0	33	90	3	103	28	14	18	39	1.90
7793--7863	19	4.0	18	72	25	62	26	12	21	39	1.89
8220--8304	19	4.4	19	75	21	70	38	0	0	61	0.96
8224--8314	11	9.2	10	73	22	68	36	0	0	63	0.94
8231--8314	28	2.9	28	76	16	82	35	0	0	64	0.94
8232--8316	40	2.1	41	85	14	115	34	0	0	65	0.93
8273--8314	18	2.2	19	91	8	68	33	0	0	66	0.92
8259--8314	29	2.0	29	86	10	80	33	0	0	66	0.92
8269--8316	10	4.8	10	80	17	55	31	0	0	68	0.90
8613--8659	16	3.1	15	80	20	53	48	0	2	48	1.13
8615--8661	15	3.1	14	80	19	51	51	0	2	46	1.13
9197--9229	2	16.5	2	100	0	66	48	0	0	51	1.00
11743--11776	2	17.0	2	93	0	59	50	2	0	47	1.16
12463--12494	2	16.0	2	100	0	64	50	0	0	50	1.00
13706--13756	24	2.1	24	82	7	59	27	0	9	62	1.26
14279--14473	5	38.2	5	71	20	122	53	1	1	43	1.19
14279--14473	7	27.9	7	72	22	144	53	1	1	43	1.19
14282--14470	2	106.5	2	71	26	142	53	1	1	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23774--24154	27	13.9	27	84	5	435	22	31	16	29	1.95
23774--24128	109	3.2	109	86	1	460	21	31	16	30	1.95
23774--24154	82	4.6	81	85	2	449	22	31	16	29	1.95
23807--24577	28	27.0	28	82	7	398	26	30	16	25	1.97
24135--24594	92	5.2	89	83	6	427	29	29	18	21	1.97
24135--24592	124	3.8	125	81	6	431	29	29	18	22	1.97
24729--24860	48	2.8	48	89	0	192	19	25	18	35	1.95
26329--26357	2	14.5	2	100	0	58	48	0	0	51	1.00
29392--29524	71	1.9	72	87	1	196	44	12	14	29	1.81
30642--30731	32	2.8	32	81	1	92	25	18	26	28	1.98
30767--31153	28	13.8	28	89	0	513	22	18	27	31	1.97
30668--31153	56	8.6	56	81	3	535	23	17	27	31	1.97
30720--31153	84	5.1	84	85	1	546	23	17	28	31	1.97
31163--31236	13	5.7	12	77	15	67	36	14	13	35	1.86
31163--31236	26	2.8	27	82	13	84	36	14	13	35	1.86
33397--33623	79	2.9	79	79	5	271	36	15	21	26	1.94
34516--34645	63	2.1	63	89	2	199	44	14	13	27	1.82
35279--35596	41	7.6	42	77	6	279	38	11	26	23	1.89
35308--35596	82	3.5	82	78	7	321	39	11	26	23	1.88
35606--36743	62	18.5	61	85	5	1266	30	18	25	25	1.98
42863--43353	79	6.2	78	80	7	478	32	14	25	27	1.94
42863--43353	157	3.1	153	81	6	504	32	14	25	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42863--43353	236	2.1	236	84	3	632	32	14	25	27	1.94
45652--45781	63	2.1	63	92	0	215	39	13	18	29	1.88
45672--45778	30	3.5	30	69	12	90	38	14	18	28	1.90
49496--49572	20	3.8	20	79	6	75	40	12	16	29	1.86
50747--50834	31	2.8	31	79	10	97	22	20	27	29	1.99
50780--51317	28	18.9	29	85	6	576	23	16	27	31	1.96
50780--51317	56	9.4	57	85	6	634	23	16	27	31	1.96
50780--51317	84	6.3	85	85	5	651	23	16	27	31	1.96
51327--51399	13	5.5	14	73	12	64	36	17	12	32	1.87
51327--51399	26	2.8	26	74	13	78	36	17	12	32	1.87
51575--51631	26	2.2	26	80	0	60	24	7	29	38	1.82
52597--52636	7	5.9	7	88	5	64	0	0	12	87	0.54
52597--52635	20	2.0	20	90	10	62	0	0	12	87	0.55
52597--52637	13	3.1	13	89	6	64	0	0	12	87	0.53
57207--57249	15	2.9	15	71	0	50	16	0	41	41	1.48
59476--59563	45	2.0	45	95	0	158	17	20	18	44	1.87
64716--64891	20	7.7	20	68	25	84	43	12	15	27	1.83
64716--64891	91	1.9	91	88	4	266	43	12	15	27	1.83
64765--64841	41	1.9	41	84	7	104	45	11	12	29	1.78
64805--64901	50	1.9	51	91	2	160	45	12	17	24	1.83
70962--71010	15	3.3	15	86	8	57	46	24	20	8	1.77
71317--71482	88	1.9	88	87	0	242	35	12	19	33	1.88

Tables:   1

The End!