Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold178
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1196275
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 89861 characters in sequence are not A, C, G, or T
File 3 of 6
Found at i:330334 original size:159 final size:158
Alignment explanation
Indices: 330136--330493 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 158
330126 TAAAACACAT
* * **
330136 TCATTAGGATAAATGACATTGATGCTTTAGG-TTCGCAAGAAAAGCTTTTCTTTCCACC-TTGTT
1 TCATTAGGATACATGATATTGATGCTTT-GGTTTCGCAAGAAAAGCTTTTCTCACCACCATT-TT
* * * * ** *
330199 TTCAAGAAACAAAGTTCATCTCTTAAGTTGGACAAGCATGAATACTCATAGTAATCCCCACTCTT
64 ATAAAGAAACAAAGTTCATCTCTCAAATAAGACAAACATGAATACTCATAGTAAT-CCCACTCTT
**
330264 TTCAAGATTTGGTAGCATAAACATAGTCTTC
128 TTCAAGATTACGTAGCATAAACATAGTCTTC
*
330295 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTTCTCACCACCATTTTAT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCACCACCATTTTAT
* * *
330360 AAAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATACTCATAGTAATCCCATTCTTTTC
66 AAAGAAACAAAGTTCATCTCTCAAATAAGACAAACATGAATACTCATAGTAATCCCACTCTTTTC
** *** *
330425 CGGATTACGTATTGTAAATATAGTCTTC
131 AAGATTACGTAGCATAAACATAGTCTTC
* *
330453 TCATTAGGATACACGATATTGATGCTTT-GTTTCGTAAGAAA
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
330494 GCCTAAGTTT
Statistics
Matches: 172, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 12 0.07
158 60 0.35
159 98 0.57
160 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (158 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCACCACCATTTTAT
AAAGAAACAAAGTTCATCTCTCAAATAAGACAAACATGAATACTCATAGTAATCCCACTCTTTTC
AAGATTACGTAGCATAAACATAGTCTTC
Found at i:334250 original size:159 final size:158
Alignment explanation
Indices: 334083--334479 Score: 433
Period size: 159 Copynumber: 2.5 Consensus size: 158
334073 GAGACAGTCT
* *
334083 CCATTCTTTTCAGGATTGGGAACC-TAAAACACATTCCTT-TTATTAGGATAAATGACATTGATG
1 CCATTCTTTTCAGGATTGGGAACCAT-AAACACAGT-CTTCTCATTAGGATAAATGACATTGATG
* * *
334146 CTTTAGGTTCGCAAGAAAAGCTTTTCTTTCCACC-TTGTTTTCAAGAATCAAAGTTCATCTCTTA
64 CTTTAGGTTCGCAAGAAAAGCTTTTCTTTCCACCGTT-TTATAAAGAATCAAAGTTCATCTCTCA
* ** * *
334210 AGTTGGACAAGCATGAATACTCATAGTAATCC
128 AATAAGACAAACATAAATACTCATAGTAAT-C
* * * * * * *
334242 CCATTCTTTTCAAGATTTGGTAGCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
1 CCATTCTTTTCAGGATTGGGAACCATAAACACAGTCTTCTCATTAGGATAAATGACATTGATGCT
* * *
334307 TTAGTTTCGCAAGAAATGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTATCTCTCAAAT
66 TTAGGTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTCATCTCTCAAAT
334372 AAGACAAACATAAATACTCATAGTAATC
131 AAGACAAACATAAATACTCATAGTAATC
* ** * *** * * * * *
334400 CCATTCTTTTCCGGATTACGTATTGTAAATATAGTCTTCTCATTAGGATACACGATATTGATGCT
1 CCATTCTTTTCAGGATTGGGAACCATAAACACAGTCTTCTCATTAGGATAAATGACATTGATGCT
*
334465 TT-GTTTCGCAAGAAA
66 TTAGGTTCGCAAGAAA
334480 GCCTAAGTTC
Statistics
Matches: 206, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
157 13 0.06
158 62 0.30
159 128 0.62
160 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
CCATTCTTTTCAGGATTGGGAACCATAAACACAGTCTTCTCATTAGGATAAATGACATTGATGCT
TTAGGTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTCATCTCTCAAAT
AAGACAAACATAAATACTCATAGTAATC
Found at i:336003 original size:20 final size:20
Alignment explanation
Indices: 335978--336031 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
335968 GTATCGATAC
**
335978 AATGTATCGATACATGACTA
1 AATGTATCGATACATGAAAA
*
335998 AATGTATCGATACTTGAAAA
1 AATGTATCGATACATGAAAA
336018 AATGTATCGATACA
1 AATGTATCGATACA
336032 AGTCATTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:336122 original size:33 final size:32
Alignment explanation
Indices: 336063--336130 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
336053 GTAGCTAAAT
*
336063 TTGTATCGATATGCACAATATATATCGAGACA
1 TTGTATCGATATGCACAAAATATATCGAGACA
* *
336095 TTGTATCGATACAT-CACAAAATGTATCGATACA
1 TTGTATCGAT--ATGCACAAAATATATCGAGACA
336128 TTG
1 TTG
336131 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 10 0.32
33 19 0.61
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (32 bp):
TTGTATCGATATGCACAAAATATATCGAGACA
Found at i:344213 original size:22 final size:23
Alignment explanation
Indices: 344188--344233 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
344178 CGAAATTGTT
344188 AAATTATTTT-ATT-AAGGGGGAG
1 AAATT-TTTTGATTAAAGGGGGAG
344210 AAATTTTTTGATTAAAGGGGGAG
1 AAATTTTTTGATTAAAGGGGGAG
344233 A
1 A
344234 GAAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.18
22 8 0.36
23 10 0.45
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (23 bp):
AAATTTTTTGATTAAAGGGGGAG
Found at i:344812 original size:20 final size:20
Alignment explanation
Indices: 344789--344839 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
344779 AAATTGCACA
**
344789 GTATCGATACATGACTAAAT
1 GTATCGATACATGAAAAAAT
* *
344809 GTATCAATACTTGAAAAAAT
1 GTATCGATACATGAAAAAAT
344829 GTATCGATACA
1 GTATCGATACA
344840 AGTCATTGGC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (20 bp):
GTATCGATACATGAAAAAAT
Found at i:344931 original size:33 final size:32
Alignment explanation
Indices: 344870--344937 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
344860 ATAGCTAAAT
* *
344870 TTGTATCGATACACACTATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
344902 TTGTATTGATACATCACAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
344935 TTG
1 TTG
344938 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:347034 original size:476 final size:473
Alignment explanation
Indices: 345895--347302 Score: 1725
Period size: 476 Copynumber: 3.0 Consensus size: 473
345885 GTTTCATAAG
* * * *
345895 AAAGCCTAAGTTCGTGCCCCAAATGAGACAAACATGGATTCTAGCAATGATCTTTTTTCATTTTA
1 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTA
* * **
345960 TGATAAGGCA-TAATAACCACATTTTCCGGATTAGGATAAATGATATTGATGATTTTCTTTTGCA
66 TGATTAGGCACT-ATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * *
346024 TGGAATTCTTTTTTTTACCCTATTTTCCTTAAAATCAATGTTATTCCCTTAAATAAGACAAGCAT
130 TGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCAT
* * * * ** *
346089 TGATTCTCATAACTGTCTCCATTCTTTTCAAGATTGGGAACCTAAAAGGCATTCCCTTTAGTAGG
195 CGATTCTCGTAACAGTC-CCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTTAATAGG
* * * *
346154 ATACTTGACATTGGTGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACCATTTTATAAAGAATC
259 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTT-TAAAGAATC
* * * *
346219 AAAGTTTATCTCTTAAATAAGAC-AATCATGAATATTGATAACAATCCCTATTTTTTTCAGGATT
323 AAAGTTTATCT-TTAAATAAGACAAAT-ATGAATACTCATATCAATCCCTATTCTTTTCAGGATT
** * * * *
346283 AGGTATTGTAAACATAGTTTTCTCATTTGGTTACACGATATTGATGCG-TT-GTTTCGTAAGAAA
386 AGGTATCATAAACATAGTCTTCTCATTTGGATACAAGATATTGATG-GTTTGGTTTCGCAAGAAA
* *
346346 GGC-TTTTCCCTACGAATTTTTGT
450 GGCTTTTTCCCCACCAATTTTTGT
* * * * *
346369 AAAGTCTGAGTTCGGGCCTCAAATGAGGCAAACATGGATTCTTGTAATGATCTTCTTTCATTTCA
1 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTA
* * * *
346434 TGATTTGGCACTATAAGCACATTCTCCTCATTAGGCTAAATGATATTGATGATTTTCTTTTGCAT
66 TGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * **
346499 GGAATTCTTTTCTTTGACCTATTTT-CTCTAAAATCAAAGCTCGTCCCTTAAATAAGACAAGCAT
131 GGAATTCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTAATCCCTTAAATAAGACAAGCAT
* * ** *
346563 CGATTCTCGTAACAGACCCAATTCTTTTCAGGATTGGGAAACTAAAACACATTTTCTTCAATAGG
195 CGATTCTCGTAACAGTCCC-ATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTTAATAGG
* * * * * *
346628 ATTCATGACATTGATACTTTCGTATCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
259 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTT-AAAGAATC
* * *
346693 AAAGTTTATCTATTAAATAAGACAAATATGAATACTCATATCTATCCCCATTCTTTTCAAGATTA
323 AAAGTTTATCT-TTAAATAAGACAAATATGAATACTCATATCAATCCCTATTCTTTTCAGGATTA
** * * * * *
346758 GGTGCCATAAACATAGTCTTCTTATTTGGATATATGATATTGGTGGTTTGGTTTTGCAAGAAAGG
387 GGTATCATAAACATAGTCTTCTCATTTGGATACAAGATATTGATGGTTTGGTTTCGCAAGAAAGG
346823 CTTTTTCCCCACCAATTTTTGT
452 CTTTTTCCCCACCAATTTTTGT
346845 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTT-ATTTT
1 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-TTTCATTTT
* * * * **
346909 GTGATTACGCACTATAAACACATTTTTCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGTG
65 ATGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * *
346974 TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTAATCCCATAAATAAGACAAGTAT
130 TGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCAT
* * ** *
347039 CGATTCTCGTAACAGTCTCTATTCTTTTTAGGATTGGGAACCTAAAACACATTCCCTTTTTTAAG
195 CGATTCTCGTAACAGTC-CCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTTAATAGG
* * * *
347104 ATACATGACATTGATGTTTTGGGGTCACAAGAAAAACTTTTCTTTCCATCGTTTTTTAAAGAATC
259 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCG-TTTTTAAAGAATC
* * * * *
347169 AAAATTTATCTTTCAAGTTAGACAAACATGAATAGTCATAGT-AATCCCTATTCTTTTCAGGATT
323 AAAGTTTATCTTT-AAATAAGACAAATATGAATACTCATA-TCAATCCCTATTCTTTTCAGGATT
* * * ** * *
347233 AGGTATCTTAAACATATTCTTCTCATTAGGGCACAAGATATTGATGCTTTGGTTTCACAAGAAAG
386 AGGTATCATAAACATAGTCTTCTCATTTGGATACAAGATATTGATGGTTTGGTTTCGCAAGAAAG
347298 GCTTT
451 GCTTT
347303 CCTTTCCGCC
Statistics
Matches: 788, Mismatches: 132, Indels: 26
0.83 0.14 0.03
Matches are distributed among these distances:
473 6 0.01
474 359 0.46
475 20 0.03
476 391 0.50
477 12 0.02
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (473 bp):
AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTA
TGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
GGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATC
GATTCTCGTAACAGTCCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTTAATAGGAT
ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAAAGAATCAAA
GTTTATCTTTAAATAAGACAAATATGAATACTCATATCAATCCCTATTCTTTTCAGGATTAGGTA
TCATAAACATAGTCTTCTCATTTGGATACAAGATATTGATGGTTTGGTTTCGCAAGAAAGGCTTT
TTCCCCACCAATTTTTGT
Found at i:347231 original size:159 final size:159
Alignment explanation
Indices: 347057--347394 Score: 356
Period size: 159 Copynumber: 2.1 Consensus size: 159
347047 GTAACAGTCT
* * * * *
347057 CTATTCTTTTTAGGATTGGGAACCTAAAACACATTCCCTT-T-TTTAAGATACATGACATTGATG
1 CTATTCTTTTCAGGATTAGGAACCTAAAACACATT--CTTCTCATTAAGACACAAGACATTGATG
* * * * * * *
347120 TTTTGGGGTCACAAGAAAAACTTTTCTTTCCATCGTTTTTTAAAGAATCAAAATTTATCTTTCAA
64 CTTTGGGGTCACAAGAAAAACTTTCCTTTCCACCGTTTTATAAAGAAACAAAATTTAACTCTCAA
*** ** *
347185 GTTAGACAAACATGAATAGTCATAGTAATCC
129 AAAAGACAAACAAAAATACTCATAGTAATCC
* * * * * * *
347216 CTATTCTTTTCAGGATTAGGTATCTTAAACATATTCTTCTCATTAGGGCACAAGATATTGATGCT
1 CTATTCTTTTCAGGATTAGGAACCTAAAACACATTCTTCTCATTAAGACACAAGACATTGATGCT
** ** * *
347281 TTGGTTTCACAAGAAAGGCTTTCCTTTCCGCCGTTTTATAAAGAAACAAAGTTTAACTCTCAAAA
66 TTGGGGTCACAAGAAAAACTTTCCTTTCCACCGTTTTATAAAGAAACAAAATTTAACTCTCAAAA
347346 AAGACAAACAAAAATACTCATAGTAATCC
131 AAGACAAACAAAAATACTCATAGTAATCC
*
347375 CTATCCTTTTCAGGATTAGG
1 CTATTCTTTTCAGGATTAGG
347395 TTCGGTAAAC
Statistics
Matches: 145, Mismatches: 32, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
157 3 0.02
158 1 0.01
159 141 0.97
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (159 bp):
CTATTCTTTTCAGGATTAGGAACCTAAAACACATTCTTCTCATTAAGACACAAGACATTGATGCT
TTGGGGTCACAAGAAAAACTTTCCTTTCCACCGTTTTATAAAGAAACAAAATTTAACTCTCAAAA
AAGACAAACAAAAATACTCATAGTAATCC
Found at i:347432 original size:159 final size:159
Alignment explanation
Indices: 347103--347460 Score: 414
Period size: 159 Copynumber: 2.3 Consensus size: 159
347093 CCTTTTTTAA
* * ** * * * * *
347103 GATACATGACATTGATGTTTTGGGGTCACAAGAAAAACTTTTCTTTCCATCGTTTTTTAAAGAAT
1 GATACATGATATTGATGCTTTGGTTTCACAAGAAAGACTTTCCTTTCCACCGTTTTATAAAGAAA
* * *** ** * *
347168 CAAAATTTATCTTTCAAGTTAGACAAACATGAATAGTCATAGTAATCCCTATTCTTTTCAGGATT
66 CAAAATTTAACTCTCAAAAAAGACAAACAAAAATACTCATAGTAATCCCTATCCTTTTCAGGATT
* *
347233 AGGTATCTTAAACATATTCTTCTCATTAG
131 AGGTATCGTAAACATAGTCTTCTCATTAG
** * * *
347262 GGCACAAGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCCTTTCCGCCGTTTTATAAAGAAA
1 GATACATGATATTGATGCTTTGGTTTCACAAGAAAGACTTTCCTTTCCACCGTTTTATAAAGAAA
*
347327 CAAAGTTTAACTCTCAAAAAAGACAAACAAAAATACTCATAGTAATCCCTATCCTTTTCAGGATT
66 CAAAATTTAACTCTCAAAAAAGACAAACAAAAATACTCATAGTAATCCCTATCCTTTTCAGGATT
347392 AGGT-TCGGTAAACATAGTCTTCTCATTAG
131 AGGTATC-GTAAACATAGTCTTCTCATTAG
* * ** *
347421 GATACATGATATCGATGCCTT-GTTTTGCAAGAAAGCCTTT
1 GATACATGATATTGATGCTTTGGTTTCACAAGAAAGACTTT
347461 TTCCCAACCA
Statistics
Matches: 164, Mismatches: 34, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
158 18 0.11
159 146 0.89
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (159 bp):
GATACATGATATTGATGCTTTGGTTTCACAAGAAAGACTTTCCTTTCCACCGTTTTATAAAGAAA
CAAAATTTAACTCTCAAAAAAGACAAACAAAAATACTCATAGTAATCCCTATCCTTTTCAGGATT
AGGTATCGTAAACATAGTCTTCTCATTAG
Found at i:347727 original size:633 final size:634
Alignment explanation
Indices: 346637--347934 Score: 1585
Period size: 633 Copynumber: 2.0 Consensus size: 634
346627 GATTCATGAC
* * * * * * * * *
346637 ATTGATACTTTCGTATCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTAT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCCTTTCCACCGTTTTTGAAAGAAACAAAGTTTAA
* * * ** * *
346702 CTATTAAATAAGACAAATATGAATACTCATATCTATCCCCATTCTTTTCAAGATTAGGTGCCATA
66 CTATCAAAAAAGACAAACAAAAATACTCATATCAATCCCCATCCTTTTCAAGATTAGGTGCCATA
* * * * * ** *
346767 AACATAGTCTTCTTATTTGGATATATGATATTGGTGGTTTGGTTTTGCAAGAAAGGCTTTTTCCC
131 AACATAGTCTTCTCATTAGGATACATGATATCGATGCCTTGGTTTTGCAAGAAAGCCTTTTTCCC
* * * * *
346832 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
196 AACCAATTTTTATAAAGCCTAACTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATC
* * * * *
346897 TTCATTTATTTTGTGATTACGCACTATAAACACATTTTTCTCTTTAGGATAAATGATATTGATGA
261 TTCATTCATATTATGATTACGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGA
** ** * * * *
346962 TTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTAATCCCATAAA
326 TTTTCTTTTGCATGGAAATCAGTTCCTTACCCTATTTTCCATAAAATCAAAATTAACCCCATAAA
* * * *
347027 TAAGACAAGTATCGATTCTCGTAACAGTCTCTATTCTTTTTAGGATTGGGAACCTAAAACACATT
391 TAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCGTTTTAGGATTGGGAACCTAAAACACATT
* * * * *
347092 CCCTTTTTTAAGATACATGACATTGATGTTTTGGGGTCACAAGAAAAACTTTTCTTTCCATCGTT
456 CCCTTTATTAAGATACATGACATTGATGCTTTGGGGTCACAAGAAAAACTATTCTTTCCACCATT
* * * * * *
347157 TTTTAAAGAATCAAAATTTATC-TTTCAAGTTAGACAAACATGAATAGTCATAGTAATCC-CTAT
521 TTATAAAGAATCAAAATTTACCGCTT-AAATAAGACAAACATGAATACTCATAGTAATCCTC-AT
* * *
347220 TCTTT-TCAGGATT-AGGTATCTTAAACATA-TTCTTCTCATTAGGGCACA-AGAT
584 TCTTTGT-AGGATTCA-GTACCATAAACATAGGT-TTCTCATTA-GGCACACA-AT
*
347272 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCCTTTCCGCCGTTTTAT-AAAGAAACAAAGTTTA
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCCTTTCCACCGTTTT-TGAAAGAAACAAAGTTTA
* * * * **
347336 ACTCTCAAAAAAGACAAACAAAAATACTCATAGT-AATCCCTATCCTTTTCAGGATTAGGTTCGG
65 ACTATCAAAAAAGACAAACAAAAATACTCATA-TCAATCCCCATCCTTTTCAAGATTAGGTGCCA
347400 TAAACATAGTCTTCTCATTAGGATACATGATATCGATGCCTT-GTTTTGCAAGAAAGCCTTTTTC
129 TAAACATAGTCTTCTCATTAGGATACATGATATCGATGCCTTGGTTTTGCAAGAAAGCCTTTTTC
347464 CCAACCAATTTTTATAAAGCCTAACTTCGTGCCTCAAATGA-ACAAACATAGATTCTAGTAATGA
194 CCAACCAATTTTTATAAAGCCTAACTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGA
* * * *
347528 -CATTCCTTCATATTATGATTAGGCATTATAAGCACATTCTCCT-TGTTAGGATAAATGATATTG
259 TC-TTCATTCATATTATGATTACGCACTATAAACACATTCTCCTCT-TTAGGATAAATGATATTG
** * * *
347591 ATGATTTTCTTTTGCATGGATTTCAGTTCCTTACCCTATTTTCCATAAAATTAAAGTTAACCCCT
322 ATGATTTTCTTTTGCATGGAAATCAGTTCCTTACCCTATTTTCCATAAAATCAAAATTAACCCCA
* *
347656 TAAATATGACAAGCATCGATTCTTGCAACAGTCTCCATTCGTTTTAGGATTGGGAACCTAAAACA
387 TAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCGTTTTAGGATTGGGAACCTAAAACA
* * * * *
347721 CATTCCCTTTATTAGGCTACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTTTCCAC
452 CATTCCCTTTATTAAGATACATGACATTGATGCTTTGGGGTCACAAGAAAAACTATTCTTTCCAC
* * *
347786 CATTTTATAAAGAATCAAAGTTTGCCGCTTAAATAAGACAATCATGAATACTCATAGTAATCCTC
517 CATTTTATAAAGAATCAAAATTTACCGCTTAAATAAGACAAACATGAATACTCATAGTAATCCTC
* * *
347851 ATTCTTTGTTGGATTCAGTGCCATAAACATAGGTTTCTCATTAGGTACACAAT
582 ATTCTTTGTAGGATTCAGTACCATAAACATAGGTTTCTCATTAGGCACACAAT
* * *
347904 ATTAATGCTTTGGCTTCGCAAGAAAGGCTTT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTT
347935 TTTCCTACCA
Statistics
Matches: 561, Mismatches: 92, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
632 37 0.07
633 322 0.57
634 64 0.11
635 136 0.24
636 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (634 bp):
ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCCTTTCCACCGTTTTTGAAAGAAACAAAGTTTAA
CTATCAAAAAAGACAAACAAAAATACTCATATCAATCCCCATCCTTTTCAAGATTAGGTGCCATA
AACATAGTCTTCTCATTAGGATACATGATATCGATGCCTTGGTTTTGCAAGAAAGCCTTTTTCCC
AACCAATTTTTATAAAGCCTAACTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATC
TTCATTCATATTATGATTACGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGA
TTTTCTTTTGCATGGAAATCAGTTCCTTACCCTATTTTCCATAAAATCAAAATTAACCCCATAAA
TAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCGTTTTAGGATTGGGAACCTAAAACACATT
CCCTTTATTAAGATACATGACATTGATGCTTTGGGGTCACAAGAAAAACTATTCTTTCCACCATT
TTATAAAGAATCAAAATTTACCGCTTAAATAAGACAAACATGAATACTCATAGTAATCCTCATTC
TTTGTAGGATTCAGTACCATAAACATAGGTTTCTCATTAGGCACACAAT
Found at i:348163 original size:475 final size:471
Alignment explanation
Indices: 347272--350771 Score: 2823
Period size: 475 Copynumber: 7.3 Consensus size: 471
347262 GGCACAAGAT
* * * * * **
347272 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCCTTTCCGCCGTTTTATAAAGAAACAAAGTTTAA
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-CTTTCCACCGTTTTATAAAGAATCAAAGTTTGT
* * * ** * * *
347337 CTCTCAAAAAAGACAAACAAAAATACTCATAGTAATCCCTATCCTTTTCAGGATTAGGTTCGGTA
65 CTCTTAAATAAGACAATCATGAATACTCATAGTAATCCC-ATTCTTTTCAGGATTAGGTACTGTA
** * * * * * *
347402 AACATAGTCTTCTCATTAGGATACATGATATCGATGCCTTGTTTTGCAAGAAAGCCTTTTTCCCA
129 AACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGCTTCGCAAGAAAGGCTTTTTCCCT
* * *
347467 ACCAATTTTTATAAAGCCTAACTTCGTGCCTCAAATGA-ACAAACATAGATTCTAGTAATGA-CA
194 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATC-
* *
347530 TTC-CTTCATATTATGATTAGGCATTATAAGCACATTCTCCTTGTTAGGATAAATGATATTGATG
258 TTCTC-TCATTTTATGATTAGGCACTATAAGCACATTCTCC-TGTTAGGATAAATGATATTGATG
* * * * *
347594 ATTTTCTTTTGCATGGATTTCAGTTCCTTACCCTATTTTCCATAAAATTAAAGTTAACCCCTTAA
321 ATTTTCTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATCCCTTAA
* ***
347659 ATATGACAAGCATCGATTCTTGCAACAGTCTCCATTCGTTTTAGGATTGGGAACCTAAAACACAT
386 ATAAGACAAGCATCGATTCTCATAACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACACAT
* *
347724 TCCCTTTATTAGGCTACATGAC
450 TCCCTTCATTAGGATACATGAC
* *
347746 ATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTTTCCACCATTTTATAAAGAATCAAAGTTTGC
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGT
* * * **
347811 CGCTTAAATAAGACAATCATGAATACTCATAGTAATCCTCATTCTTTGT-TGGATTCA-GTGCCA
65 CTCTTAAATAAGACAATCATGAATACTCATAGTAATCC-CATTCTTT-TCAGGATT-AGGTACTG
*
347874 TAAACATAGGT-TTCTCATTAGG-TACACAATATTAATGCTTTGGCTTCGCAAGAAAGGCTTTTT
127 TAAACATA-GTCTTCTCATTAGGATACACAATATTGATGCTTT-GCTTCGCAAGAAAGGCTTTTT
* * * * *
347937 TCCTACCAGTTCTTGTAAAGTCTAAGTTCGTGCCTGAAATGAGACAAACATGGATTCTAGTAATG
190 CCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * *
348002 ATCTTCACTCATTTTATGGTTAGGCATTATAAGCACATTCTTCTGACTAGGATAAATGATATTGA
255 ATCTTCTCTCATTTTATGATTAGGCACTATAAGCACATTCTCCTG-TTAGGATAAATGATATTGA
* * * * *
348067 TGATTTTCTTTTGCTTGGAATTCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAGTTAATCCCTT
319 TGATTTTCTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATCCCTT
* * * *
348132 AAATAAGACAACCATCGATTCTCGTAACAGTCTCCACTCTTTTAGGATTAGGAACCTAAAACACA
384 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACACA
** * *
348197 TTTGCTTCAGTAGGATACTTGAC
449 TTCCCTTCATTAGGATACATGAC
* * * *
348220 ATTGATGCTTTCGTGTTGCAAGAAAAGCTTTTCTTTTCATCGTTTTATAAAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGT
* * * * *
348285 CTCTTAAATAAGACAATCACGAATACTGATAATAATCCACATTCTTTTCAAGATTAGGTATTGTA
65 CTCTTAAATAAGACAATCATGAATACTCATAGTAATCC-CATTCTTTTCAGGATTAGGTACTGTA
* * * * *
348350 AACAAAGTCTT-TCATTAGGATATACAATATTGATGCTTTGTTTCGCAAGATAGGCTTTTTCCCC
129 AACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGCTTCGCAAGAAAGGCTTTTTCCCT
* * * * * * * ** *
348414 ACTAGTTTTTGTGAAGTCTTAGTTCGTGCCTCAAACGAGACCAACATACATTCTTCTAATAATCT
194 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCT
* * * * * *
348479 TCTTTCATTTTATGATTTGGCACTATAAACACATTCTCCTCATT-GGCCTAAATCATATTGATGA
259 TCTCTCATTTTATGATTAGGCACTATAAGCACATTCTCCT-GTTAGG-ATAAATGATATTGATGA
* * * *
348543 TTTTCTTTTGCATAGAATTATGTTCTTTACCCTAGTTTCCTTAAAATCAAAGTTAATCCCTTAAA
322 TTTTCTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATCCCTTAAA
* * * ** * *
348608 TAAGACAAGCATCGACTCTCATAATAGTCTCCATTCTTTTTAGCATTGGGAATGTAAAGCAAATT
387 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACACATT
* *
348673 CCCTTAATTAGGATACATCAC
451 CCCTTCATTAGGATACATGAC
* * * *
348694 ATTGATGCTTTGGTATGGCAAAAAAATCTTTCCTTTCCACCGTTTTATAAAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-CTTTCCACCGTTTTATAAAGAATCAAAGTTTGT
* ** *
348759 CTCTTAAATAAGACAATCATGTATACTCATAACAATCCCCATTCTTTTCAGGATTAGGTATTGTA
65 CTCTTAAATAAGACAATCATGAATACTCATAGTAAT-CCCATTCTTTTCAGGATTAGGTACTGTA
* * * * *
348824 AACATTGTCCTCTCATTAGGATACACGATATTGATGCTTTGCTTAGCAAGAAAGGCTTTTTCCTT
129 AACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGCTTCGCAAGAAAGGCTTTTTCCCT
*** * * *
348889 GTAAATTTTTGTAAAGTCTATGTTCGTGCCTTAAATGAGACAAACATAAATTCTTA-TAATGATC
194 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTC-TAGTAATGATC
* * * *
348953 TTCTTTAATTTTATGATTAGGTACTATAAGCACATTCTCCTCGTTAGGATAAACGATATTGATGA
258 TTCTCTCATTTTATGATTAGGCACTATAAGCACATTCTCCT-GTTAGGATAAATGATATTGATGA
* * * * *
349018 TTTGT-TTTTGCATGGAAATCTTTTCTTT-GCCTAGTTTTCCATAAAATCAAAGTTCATCCCATA
322 TTT-TCTTTTGCATGGAATTCTGTTCTTTACCCTA-TTTTCCATAAAATCAAAGTTAATCCCTTA
* * * * * * *
349081 AATAAGAGAGGCAT-GAATTCTCATAATAGTC-CCTATTATTTTCTGGATTGGGAAACTAAAACG
385 AATAAGACAAGCATCG-ATTCTCATAACAGTCTCC-ATTCTTTT-AGGATTGGGAACCTAAAACA
349144 CATTCCCTTCATTAGGATACATGAC
447 CATTCCCTTCATTAGGATACATGAC
* * *
349169 ATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCTTTCCACCGTTTT-TGATAA-AATGAAAGTTT
1 ATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTCTTTCCACCGTTTTAT-A-AAGAATCAAAGTTT
* * * * *
349232 GTCTCATAAATAAGACAAACATGAATGCTCA-AGTAATGACCATTCTTTACAGGATTAGGTACCT
63 GTCTCTTAAATAAGACAATCATGAATACTCATAGTAAT-CCCATTCTTTTCAGGATTAGG----T
* ** * **
349296 CAATCATGAATATTGATA-ATAATCCCTATTCTTTTTAGGAT-TA-GGTATTGTAAACGTAGCTT
123 --A-C-TG--TA---A-ACATAGT--C--TTCTCATTAGGATACACAATATTG---A--T-GCTT
* *** * * * * ** * * ** ** *
349358 TCTCATTCG-GTTACATG-ATATT-GAT-GCATTGTTTTGT-AAG-GAAATGCTTTTTCCCTACC
168 T-GC-TTCGCAAGAAAGGCTTTTTCCCTACCAAT-TTTTGTAAAGTCTAA-G-TTCGTGCCT--C
* *** * * * *
349417 AATTTTTATAAAGTCTGAGTTCATGCTTCAAATGAGGCAAACATGGATTCTTGTAATGATTTTCT
226 AAATGAGACAAA--C--A--T-A-GATTC-TA-GT-----A-AT-GA-TC-----------TTCT
* * * * * * * *
349482 TTCATTTCAGGATTTGGCAATAAAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTT
262 CTCATTTTATGATTAGGCACTATAAGCACATTCTCCT-GTTAGGATAAATGATATTGATGATTTT
* * * * *
349547 CTTTTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATCCCTTAAATAAG
326 CTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATCCCTTAAATAAG
* * * *
349612 ACAAGCATCGATTCTCGTAATAGAC-CCGATTCTTTTCAGGATTGGGAAACTAAAACACAATT-C
391 ACAAGCATCGATTCTCATAACAGTCTCC-ATTCTTTT-AGGATTGGGAACCTAAAACAC-ATTCC
** *
349675 CTTCAACAGGATTCATGAC
453 CTTCATTAGGATACATGAC
** * *
349694 ATTGATGCTTTGGTGTCATAAGAAAAGGCTTT-TTCTCCACCATTTT-TGATAGAATCAAAGTTT
1 ATTGATGCTTTGGTGTCGCAAGAAAA-GCTTTCTT-TCCACCGTTTTAT-AAAGAATCAAAGTTT
* *
349757 GTCTGTTAAATAAGACAAAT-ATGAATACTCATAGTAATCCCCATTCCTTTT-AGTATTAGGTAC
63 GTCTCTTAAATAAGAC-AATCATGAATACTCATAGTAAT-CCCATT-CTTTTCAGGATTAGGTA-
* ** * * * * *
349820 CT-TAAACATAGTCTTCTCATTAGGACACATGATATTGGTGTTTTGGTTTTGCAAGAAAGCCTTT
124 CTGTAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTT-GCTTCGCAAGAAAGGCTTT
* * *
349884 TTCCC-ACCAATTTTTGTGAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
188 TTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAA
* * * * ** * *
349948 TGATCTTCAT-TGATCTTATGATTACGCACTATAAACGTATTCTTATCT-TTAGGATAAAGGATA
253 TGATCTTC-TCTCATTTTATGATTAGGCACTATAAGCACATTC-T-CCTGTTAGGATAAATGATA
** * * * *
350011 TTGATGATTTTCTTTTGTGTGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATC
315 TTGATGATTTTCTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATC
* * ** * *
350076 CCATAAATAAGACAAGAATCGATT-AAAGTAACAATCTCCATTCTTTTTAGGATTAGGAACCTAA
380 CCTTAAATAAGACAAGCATCGATTCTCA-TAACAGTCTCCATTC-TTTTAGGATTGGGAACCTAA
*
350140 AACACATTCCCTT-TTGTAGGATACATGAC
443 AACACATTCCCTTCAT-TAGGATACATGAC
* * * * * * * *
350169 ATTGATGTTTTAGAGTTGCAAGAAAAGCTTTTCTTCCCATCGTTTTTTAAAGAATCAAAATTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGT
* * * * * **
350234 CTCTCAAGTCAGACAAACATGAATAGTCATAGTAATCCCCATTCTTTTCAGGATTAGGTGTTGTA
65 CTCTTAAATAAGACAATCATGAATACTCATAGTAAT-CCCATTCTTTTCAGGATTAGGTACTGTA
* * ** *
350299 AACATCGTCTTCTTATTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTT--CT
129 AACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGCTTCGCAAGAAAGGCTTTTTCCCT
* * * * * *
350362 ACCAACTTTTGTAAAGTTTAAGTTCGTGCCTCAAATAAGACAGACATGGATTCTTGTAATGATCT
194 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCT
* * * * *
350427 TCTTTCATTTTATGACTAGGTACTATAAGCACATTCTCCTCATTTA-CATAAATGATATTGATGA
259 TCTCTCATTTTATGATTAGGCACTATAAGCACATTCTCCT--GTTAGGATAAATGATATTGATGA
* * *
350491 TTTTCTTTTGCATTGAATT-T-TT-TTT---C-----T---TAAAATCAAAGTTCATCACTTAAA
322 TTTTCTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATCCCTTAAA
* * * * * * *
350542 AAAGAAAAGCATCGGTTCTCGTAACAGTC-CCATTCTTTTCAGGATCGGGAAACTAAAACATATT
387 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTT-AGGATTGGGAACCTAAAACACATT
* *
350606 CCATTCAATAGGATACATGAC
451 CCCTTCATTAGGATACATGAC
* ****
350627 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCCTTTT-TGATTTTATCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTTTAT-AAAGAATCAAAGTTTG
* * * * * * **
350691 TCTCTTAAATAAGAAAAGCATGAATACTCATCGTAATCCCCATTTTTTTTC-GGATTCGGTGCCA
64 TCTCTTAAATAAGACAATCATGAATACTCATAGTAAT-CCCA-TTCTTTTCAGGATTAGGTACTG
350755 TAAACATAGTCTTCTCA
127 TAAACATAGTCTTCTCA
350772 AGAAAGGTTT
Statistics
Matches: 2432, Mismatches: 460, Indels: 284
0.77 0.14 0.09
Matches are distributed among these distances:
457 5 0.00
458 152 0.06
459 48 0.02
462 1 0.00
467 1 0.00
470 3 0.00
471 4 0.00
472 6 0.00
473 355 0.15
474 572 0.24
475 795 0.33
476 22 0.01
477 2 0.00
478 1 0.00
480 1 0.00
482 2 0.00
484 2 0.00
486 2 0.00
487 6 0.00
488 3 0.00
489 8 0.00
490 1 0.00
491 10 0.00
492 2 0.00
493 6 0.00
494 15 0.01
495 9 0.00
496 15 0.01
497 3 0.00
498 2 0.00
500 2 0.00
502 2 0.00
503 1 0.00
504 15 0.01
505 6 0.00
506 16 0.01
507 7 0.00
508 2 0.00
509 10 0.00
510 1 0.00
511 8 0.00
512 3 0.00
513 7 0.00
514 2 0.00
516 2 0.00
519 1 0.00
520 2 0.00
522 1 0.00
524 4 0.00
525 252 0.10
526 30 0.01
527 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (471 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGTC
TCTTAAATAAGACAATCATGAATACTCATAGTAATCCCATTCTTTTCAGGATTAGGTACTGTAAA
CATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGCTTCGCAAGAAAGGCTTTTTCCCTAC
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTC
TCTCATTTTATGATTAGGCACTATAAGCACATTCTCCTGTTAGGATAAATGATATTGATGATTTT
CTTTTGCATGGAATTCTGTTCTTTACCCTATTTTCCATAAAATCAAAGTTAATCCCTTAAATAAG
ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACACATTCCCTT
CATTAGGATACATGAC
Found at i:351655 original size:474 final size:471
Alignment explanation
Indices: 350771--351670 Score: 1264
Period size: 474 Copynumber: 1.9 Consensus size: 471
350761 TAGTCTTCTC
* * *
350771 AAGAAAGGTTTTTTCCCTACCAGTTCTAGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACAT
1 AAGAAAGGCTTTTTCCCCACCAGTTCTAGTAAAGTCTAACTTCATGCCTCAAACGAGACAAACAT
* * * * * *
350836 GAATTCTAGTAATGATCTTCATTCATTTTATGGTTAGGCATTATAAGCACATTCTTCTGACTAGG
66 GAATTCTACTAATAATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCACTAGG
* * * * *
350901 ATAAATGATATTCATTTTTCCTTTGCTTGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
131 ATAAATCATATTCATTTTTCCTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCTTAAAATCAA
350966 AGTTAATCCCTTAAATAAGACAACCATCAATTCTCGTAACAGTCTCCACTCTTTTAGGATTGGGA
196 AGTTAATCCCTTAAATAAGACAACCATCAATTCTCGTAACAGTCTCCACTCTTTTAGGATTGGGA
* ** * *
351031 ACCTAAAACACATTTGCTTCAGTAGGATACTTGACATTGATGCTTTCGTGTCGCAAGAAAAGCTT
261 ACCTAAAACAAATTCCCTTAAGTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTT
* * * *
351096 TTCTTTTCAACGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCACGAATATTGAT
326 TTCTTTCCAACATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCACGAATACTCAT
*
351161 AATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAAAGTCTTTCATTAGGATATACAATAT
391 AACAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAAAGTCTTTCATTAGGATATACAATAT
351226 TGATGCTTTGTTTCGT
456 TGATGCTTTGTTTCGT
* * * * * * * *
351242 AAGAAAGGCTTTTTCCCCACTAGTTTTTGTGAAGTCTTAGTTCGTGCCTCAAACGAGACCAACAT
1 AAGAAAGGCTTTTTCCCCACCAGTTCTAGTAAAGTCTAACTTCATGCCTCAAACGAGACAAACAT
* * * *
351307 -ACATTCTTCTAATAATCTTCTTTCATTTTATGATTTGGCACTATAAGCACATTCTCCTCA-TTG
66 GA-ATTCTACTAATAATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCACTAG
* * * *
351370 GCCTTAATCATATTGATGATTTTCTTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCTTAAAA
130 G-ATAAATCATATTCAT--TTTTCCTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCTTAAAA
* * * * *
351435 TCAAAGTTAATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGTAT
192 TCAAAGTTAATCCCTTAAATAAGACAACCATCAATTCTCGTAACAGTCTCCACTC-TTTTAGGAT
** * *
351500 TGGGAATGTAAAACAAATTCCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
256 TGGGAACCTAAAACAAATTCCCTTAAGTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAA
* * * *
351565 ATCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGTATA
321 AGCTTTTCTTTCCAACATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCACGAATA
351630 CTCATAACAATCCCCATTCTTTTCAGGATTAGGTATTGTAA
386 CTCATAACAATCCCCATTCTTTTCAGGATTAGGTATTGTAA
351671 TTAGGATACA
Statistics
Matches: 371, Mismatches: 53, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
470 4 0.01
471 114 0.31
473 92 0.25
474 161 0.43
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (471 bp):
AAGAAAGGCTTTTTCCCCACCAGTTCTAGTAAAGTCTAACTTCATGCCTCAAACGAGACAAACAT
GAATTCTACTAATAATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCACTAGG
ATAAATCATATTCATTTTTCCTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTAATCCCTTAAATAAGACAACCATCAATTCTCGTAACAGTCTCCACTCTTTTAGGATTGGGA
ACCTAAAACAAATTCCCTTAAGTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTT
TTCTTTCCAACATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCACGAATACTCAT
AACAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAAAGTCTTTCATTAGGATATACAATAT
TGATGCTTTGTTTCGT
Found at i:352464 original size:840 final size:839
Alignment explanation
Indices: 350928--352510 Score: 2180
Period size: 840 Copynumber: 1.9 Consensus size: 839
350918 TTCCTTTGCT
* * *
350928 TGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAACCAT
1 TGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAGTCAATCCCTTAAATAAGACAACCAT
* * * **
350993 CAATTCTCGTAACAGTCTCCACTCTTTTAGGATTGGGAACCTAAAACACATTTGCTTCAGTAGGA
66 CAATTCTCATAACAGTCTCCACTATTTTAGGATTGGGAAACTAAAACACATTCCCTTCAGTAGGA
* *
351058 TACTTGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTTCAACGTTTTATAAAGAATCA
131 TACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTATAAAGAATCA
* *
351123 AAGTTTGTCTCTTAAATAAGACAATCACGAATATTGATAATAATCCCCATTCTTTTCAGGATTAG
196 AAGTTTGTCTCTTAAATAAGACAAGCACGAATATTGATAAGAATCCCCATTCTTTTCAGGATTAG
*** * *
351188 GTATTGTAAACAAAGTCTTTCATTAGGATATACAATATTGATGCTTTGTTTCGTAAGAAAGGCTT
261 GTACCATAAACAAAGTCTTTCATTAGGATACACAATATTAATGCTTTGTTTCGTAAGAAAGGCTT
* * * ** * * * *
351253 TTTCCCCACTAGTTTTTGTGAAGTCTTAGTTCGTGCCTCAAACGAGACCAACATACATTCTTCTA
326 TTTCCCCACCAATTCTTGCAAAGTCTAAGTCCGTGCCTCAAACGAGACAAACATACATTCTACTA
* * ** * *
351318 ATAATCTTCTTTCATTTTATGATTTGGCACTATAAGCACATTCTCCTCATTGGCCTTAATCATAT
391 ATAATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCAAAGGCATAAATCATAT
* *
351383 TGATGATTTTCTTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCC
456 TAATGATTTTCTTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTAATCC
* * * * **
351448 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGTATTGGGAATGTAAAA
521 CTTAAATAAGACAACCATCGATTCTCGTAACAGCCTCCATTCTTTTTAGGATTGGGAACCTAAAA
* * * *
351513 CAAATTCCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCTTTCC
586 CAAATTCACTTAAGTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCC
*
351578 ACCATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGTATACTCATAACAATCC
651 ACCATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAACAATCC
*
351643 CCATTCTTTTCAGGATTAGGTATTGTAATTAGGATACACGATAATGATACTTTGTTTAGCAAGAA
716 CCATTCTTTTAAGGATTAGGTATTGTAATTAGGATACACGATAATGATACTTTGTTTAGCAAGAA
351708 AGGCTTTTTCCTTACAAATTTTTGTAAAGTCTTTGTTCGTGCCTTAAATGAGACAAACA
781 AGGCTTTTTCCTTACAAATTTTTGTAAAGTCTTTGTTCGTGCCTTAAATGAGACAAACA
* *
351767 TGGAAATCTTTTCTTTGCCATGTTTTCCTTAAAATCAAAGTCAATCCCTTAAATAAGACAAGCAT
1 TGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAGTCAATCCCTTAAATAAGACAACCAT
* * * * * *
351832 CAATTCTCATAATAGTC-CTTATTATTTTCTGGATTGGGAAACTAAAATACATTCCCTTCATTAG
66 CAATTCTCATAACAGTCTC-CACTATTTT-AGGATTGGGAAACTAAAACACATTCCCTTCAGTAG
* * *
351896 GATACATGACATTGATGCTTTGGTGTCG-ATAGAAAAGCTTTTCTTTCCACCATTTT-TGATAA-
129 GATACATGACATTGATGCTTTCGTGTCGCA-AGAAAAGCTTTTCTTTCCAACGTTTTAT-A-AAG
* * *
351958 AATCAAAGTTTTTCTCTTAAATAAGACAAGCATGAATACTT-ATAGGAATCCCCATTCTTTTTCA
191 AATCAAAGTTTGTCTCTTAAATAAGACAAGCACGAATA-TTGATAAGAATCCCCATTC-TTTTCA
* * * * * *
352022 -GATTCGGTGCCATAAACATATTTTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGTAA
254 GGATTAGGTACCATAAACAAAGTCTT-TCATTAGGATACACAATATTAATGCTTT-GTTTCGTAA
* * **
352086 GAAAGGCTTTTTCCCTACCAATTCTTGCAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGG
317 GAAAGGCTTTTTCCCCACCAATTCTTGCAAAGTCTAAGTCCGTGCCTCAAACGAGACAAACATAC
* * * *
352151 ATTCTAGTAATGATCTTCATTCATTTTAT-AGTTAGGCATTATAAGCACATTCTTCTCAGAAGG-
382 ATTCTACTAATAATCTTCATTCATTTTATGA-TTAGGCACTATAAGCACATTCTCCTCA-AAGGC
* * *
352214 ATAAATGATATTAATGATTTTCTTTTGCATGGAATCT-TTTTCTTTGCCCTATTTTCCCTAAAAT
445 ATAAATCATATTAATGATTTTCTTTTGCATAGAAT-TATGTTCTTTGCCCTATTTTCCCTAAAAT
* *
352278 CAAAGTTAATCCCTTAAATAAGACAACCATCGATTCTCGTAGCAGCCTCCATTC-TTTTAGGGTT
509 CAAAGTTAATCCCTTAAATAAGACAACCATCGATTCTCGTAACAGCCTCCATTCTTTTTAGGATT
* * *
352342 GGGAACCTAAAACACATTTACTT-AGTAGGATACTTGACATTGATGCTTTCGTGTCGCAAGAAAA
574 GGGAACCTAAAACAAATTCACTTAAGTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAA
* * * * *
352406 GCTTTTCTTTTCATCGTTTTATCAAGAATCAAAGTTTGTCTCTTAAATAAGGCAATCATGAATAC
639 GCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATAC
* *
352471 TGATAATAATCCCCATTCTTTTAAGGATTAGGTATTGTAA
704 TCATAACAATCCCCATTCTTTTAAGGATTAGGTATTGTAA
352511 ACATAGTCTT
Statistics
Matches: 643, Mismatches: 89, Indels: 23
0.85 0.12 0.03
Matches are distributed among these distances:
838 1 0.00
839 83 0.13
840 278 0.43
841 62 0.10
842 216 0.34
843 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (839 bp):
TGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAGTCAATCCCTTAAATAAGACAACCAT
CAATTCTCATAACAGTCTCCACTATTTTAGGATTGGGAAACTAAAACACATTCCCTTCAGTAGGA
TACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTATAAAGAATCA
AAGTTTGTCTCTTAAATAAGACAAGCACGAATATTGATAAGAATCCCCATTCTTTTCAGGATTAG
GTACCATAAACAAAGTCTTTCATTAGGATACACAATATTAATGCTTTGTTTCGTAAGAAAGGCTT
TTTCCCCACCAATTCTTGCAAAGTCTAAGTCCGTGCCTCAAACGAGACAAACATACATTCTACTA
ATAATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCAAAGGCATAAATCATAT
TAATGATTTTCTTTTGCATAGAATTATGTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTAATCC
CTTAAATAAGACAACCATCGATTCTCGTAACAGCCTCCATTCTTTTTAGGATTGGGAACCTAAAA
CAAATTCACTTAAGTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCC
ACCATTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAACAATCC
CCATTCTTTTAAGGATTAGGTATTGTAATTAGGATACACGATAATGATACTTTGTTTAGCAAGAA
AGGCTTTTTCCTTACAAATTTTTGTAAAGTCTTTGTTCGTGCCTTAAATGAGACAAACA
Found at i:355337 original size:474 final size:473
Alignment explanation
Indices: 353970--362351 Score: 8745
Period size: 475 Copynumber: 17.9 Consensus size: 473
353960 TGATGCTTTG
* ** * * * * *
353970 TTTGTGAAGTCTTCGTTCGTGCCTCAAACGAGACAAATATAGATTCTTCTAATAATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * * * * * *
354035 TTTTATCATTTGGCACTATAAGCTCATTCTCCTCATTGGGCTAAATCATATTGATAATTTTCTTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTTT
*
354100 TGCATAGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
131 TGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
* * * * *
354165 GCATCGATTCTCGTAAAAGTCACCATTCATTTCAGGCTTGGGAACCTAAAACACATTCCCTTCAT
196 GCATCGATTCTCGT-ACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACACATTTCCTTCAT
*
354230 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAG
259 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAAG
*
354295 AATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTTAGG
324 AATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * *
354360 ATTACGTGTTGTAAACATCGTTTTCTCATTTGGATACACGATATGGATGCATTGTTTCGCATGAA
389 ATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAA
*
354425 AGGCTTTTT-CCTGCCAATT
454 AGGCTTTTTCCCTACCAATT
* * *
354444 TTTGTAAAGCCCAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * * *
354509 TTTTATGACTAGGTACTATAAGCACATTCTCCTCATTTA-GATAAATTATAATGATGATTTTCTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCA-GTAGGATAAATGATATTGATGATTTTCTT
* * * *
354573 TTGCATTGAATT-TTTT-TCTGCGCC-ATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGAC
130 TTGCATGGAATTCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGAC
* ** * * * * *
354635 AAGCATCGGTTCTCACAACCGTCCCCATTCTTTTCAGGATTGGAAAACTAAAACACATTCCCTTC
194 AAGCATCGATTCTC-GTACAGTCTCCATTCTTTT-AGGATTGGGAACCTAAAACACATTTCCTTC
*
354700 ATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGCTTTTGAT
257 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCG-TTTT-AT
* *
354765 -AA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATTA-TCATAGTAATCCCCATTCTTT
320 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAA-TACTCATAATAATCCCCATTC-TT
* *** * *
354827 TTCA-GATTTGGTGCCATTAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTC
383 TTCAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTC
*
354891 GCAAGAAAGGCTTTTTCCCTACCAGTT
447 GCAAGAAAGGCTTTTTCCCTACCAATT
* * * *
354918 CTTGTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* *
354983 TTTTAT-AGTTAGGCATTATAAGCACATTCTTCTTAGTAGGATAAATGATATTGATGATTTTCTT
66 TTTTATGA-TTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTT
*
355047 TTGCTTGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * * *
355112 ACCATCGATTCTCGTACTAGTCTCCACTCTTTTAGGAATGGGAACTTAAAACACATTTGCTTTAG
195 AGCATCGATTCTCGTAC-AGTCTCCATTCTTTTAGGATTGGGAACCTAAAACACATTTCCTTCAT
* * * *
355177 TAGGATACTTGACATTGATGCTTTCGTGTCACAAGAAAAGCTTTTCTTTTCATCGTTTTATAAAG
259 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAAG
*
355242 AATCAAAGTTTGTCTCTTAAATAAGACAATCATAAATACTCATAATAATCCCCATTCTTTTCAGG
324 AATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * *
355307 ATTAGGTATTGTAAACATAGTCTT-TCATTAGGATAAATGATATTGACGCTTTGTTTCGCAAGAA
389 ATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAA
* * *
355371 AGGCTTTTTCCCCACTAGTT
454 AGGCTTTTTCCCTACCAATT
* * * * * * * * * *
355391 TTTTTGATGTCTTAGTTTGTGCCTCAAACGAGACGAACATAGATTCTTCTAATAATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * *
355456 TTTTATGATTTGGCACTAT------A-TCTCCTCA-TTGGCATAAATCATATTGATGAGTTTCTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGG-ATAAATGATATTGATGATTTTCTT
*
355513 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCATAAATAAGACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * * * * *
355578 AGCATTGATTCTCGTAATAGTCTCCATTCTTTTTAGTATTAGGAACATAAAGCAAATTCCCTTAA
195 AGCATCGATTCTCGT-ACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACACATTTCCTTCA
* * *
355643 TTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCTTTCCACCGTTTTATAAA
258 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAA
* * * * * * *
355708 GAATCAAAGCTTGTCTCTTAAATAAGATAATCATGTATACTCATAACAATCACCAATCTTTTCAA
323 GAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAG
* * ** *
355773 GATTA------GT-----TA-T-TGC-AATTAGGATACAAAATATTGATGCTTTGTTTAGCAAGA
388 GATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGA
* *
355824 AAGGCTTTTTCCTTACAAATT
453 AAGGCTTTTTCCCTACCAATT
** * * * *
355845 TTTGTAAAACCTATA-TTCGTGCCTTAAATGAGAAAAACATGGATTCCTATAATGATCTTCTTTC
1 TTTGTAAAGTCTA-AGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
* * * * *
355909 ATTTTATGACTAGGTACTATAAGCACATTCTCCTC-GTTAGGATAAACGATGTTGATGA-TTTCT
65 ATTTTATGATTAGGCACTATAAGCACATTCTTCTCAG-TAGGATAAATGATATTGATGATTTTCT
* * * *
355972 TTTGCATGGAAATCTTTTCTTTGCCATGTTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGAC
129 TTTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGAC
* * * * * *
356037 AAGCTTCAATTCTCATAACAGTC-CTTATAT-TTTCT-GGATTGGGAAACTAAAACACATTCCCT
194 AAGCATCGATTCTCGT-ACAGTCTC-CAT-TCTTT-TAGGATTGGGAACCTAAAACACATTTCCT
* * *
356099 TCGTTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-T
255 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTAT
* * * *
356163 GATAA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCACGAATACTTATAGTAATCCCCATTCTT
320 -A-AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTT
** * *** * * *
356227 TTTTGGATTCGGTGCCATAAACATAGTCTTCTCATTAGGATAGAGGATATTAATGCTTTGGTTTC
383 TTCAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTC
*
356292 GCAAGAAAGGCTCTTTCCCTACCAATT
447 GCAAGAAAGGCTTTTTCCCTACCAATT
* * * * *
356319 CTTGCAAAGTCTAAGCTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * *
356384 TTTTAT-AGTTAGGCATTATAAGCACATTCTTCTCAGAAGGATAAATGATATTAATGATTTTCTT
66 TTTTATGA-TTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTT
* * * * *
356448 TTGCACGGAATTTTTTTCTTTTCCCTATTTTTCGTAAAATCAAAGTTAATCCCTTAAATAAGACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * *
356513 ACCATCGATTCTCGTAGCAGACTCCACTCTTTTAGGGTTGGGAACCTAAAACACATTTGCTTCAG
195 AGCATCGATTCTCGTA-CAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACACATTTCCTTCAT
* * *
356578 TAGGATACTTGACGTTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCCTTT-CATCGTTTTATAAA
259 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCATCGTTTTATAAA
* * * *
356642 GAATCAAAGTTTGTCTCTTAAATAAGGCAATCGTGAATACTGATAATAATCCTCATTCTTTTCAG
323 GAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAG
* *
356707 GATTAGGTATTGTAAACATAGTCTT-TCATTAGGATACACGATATTGATGCGTTGTTTCGCAAGA
388 GATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGA
** * * *
356771 AAATCTTTTTCCCCACTAGTT
453 AAGGCTTTTTCCCTACCAATT
* * * * * * *
356792 TTTGTGAAGTCTTAGTTCGTGCTTCAAATGAGACAAACATAGATTCTTCTAATAATCTCCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * * *
356857 TTTTATGATTTGGCACTATAAGCACATTC-TCGTCATTGGGCTAGAA-CATATTGATGATTAAT-
66 TTTTATGATTAGGCACTATAAGCACATTCTTC-TCAGTAGGATA-AATGATATTGATGATT-TTC
* * * * * * **
356919 TTTGGCATAGAATTCTTTTCATTACCCTATTTTTCTTAAAATCATAGTTAATATCTTAAATAAGA
128 TTTTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGA
* * * * * *
356984 CAAGCATCGATTCTCGCAACAGTCTCTATTTTTTTTAAGACTGGGAACCTAAAACACATTCCCTT
193 CAAGCATCGATTCTCG-TACAGTCTCCA-TTCTTTTAGGATTGGGAACCTAAAACACATTTCCTT
* *
357049 CATTAGGATACATGACATTGTTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG-TTTATA
256 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATA
* * * * * *
357113 AAGAATCAAAGTTTGTCTCTTAAATATGGCAATCACGAATACTCACAACAATTCCCATTCTTTTC
321 AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTC
* * * **
357178 AGGATTAGGTGTTGTAAACATCA-TCTTGTCATTAGGATAGACGATATTGATGCTTTATTTCATA
386 AGGATTAGGTGTTGTAAACAT-AGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCA
* *
357242 GGAAAGCCTTTTT-CCTACCAATT
450 AGAAAGGCTTTTTCCCTACCAATT
* *
357265 TTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * *
357330 TTTTATGACTAGGTACTATAAGCACATTCTCCTCATTTA-GATAAATGATATTAATGATTTTCTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCA-GTAGGATAAATGATATTGATGATTTTCTT
* * *
357394 TTGCATTGAATT-TTTTCTGT-CCC-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * *
357456 AGCATCGGTTCTCGTAACAGTCCCCATTCTTTTCAGGATTGGGAAACTAAAACACATTTCCTTTA
195 AGCATCGATTCTCGT-ACAGTCTCCATTCTTTT-AGGATTGGGAACCTAAAACACATTTCCTTCA
357521 TTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTT-TGAT
258 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTAT-A-
* *
357584 AA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTCATAGTAATCCCCATTCTTTTT
321 AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTC-TTTT
* * *** * *
357648 C-GGATTTGATGCCATTAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGC
385 CAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGC
* *
357712 AAGAAAGGCTTTTTCCATACCAGTT
449 AAGAAAGGCTTTTTCCCTACCAATT
* * *
357737 CTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-TATTC
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCT-TTC
* * *
357801 TTTTTATGGTTAGGCATTATAAGCACATTCTTCGT-AGTAGGATAAATGATATTGATGATTTTCT
65 ATTTTATGATTAGGCACTATAAGCACATTCTTC-TCAGTAGGATAAATGATATTGATGATTTTCT
* *
357865 TTTGCATGGAATTCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAGGAC
129 TTTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGAC
* * *
357930 AACCATCGATTTTCGTAATAGTCTCCACTT-TTTTAGGATTGGGAACCTAAAACACATTTCCTTC
194 AAGCATCGATTCTCGT-ACAGTCTCCA-TTCTTTTAGGATTGGGAACCTAAAACACATTTCCTTC
* * * * * * * * * *
357994 AATAGGGTACTTAATAGTGATGCTTTTGTGACGCAAGAAAAGCTTTTCTTTTCATCATTTTATAA
257 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAA
* * *
358059 AGAATCAAAGTTTGTCTCTTAAATAAGACACAGTCATGAATACTGATTATAATTCCCATTCTTTT
322 AGAATCAAAGTTTGTCTCTTAAATAAGACA-A-TCATGAATACTCATAATAATCCCCATTCTTTT
* * * * * *
358124 CAAGATTAGGTATCGTAAACATAGTCTT-TCATTAAGATACAAGATTTTGATGCTTTGTTT-G--
385 CAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCA
* * * *
358185 TG-AAGTCTTCGTTCGTGCCT--CAA-A
450 AGAAAGGCTT--TT--TCCCTACCAATT
*** * * * * * *
358209 CGAG-ACAAATAT-AGATTC-T---TC---T---A-ATA-AT--CTTC-T-T--TCAT-TT-TAT
1 TTTGTA-AAGTCTAAG-TTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTT
* * * *** * ** * * ** *
358252 CA-TTT-GGCACTATAAGCTC-ATTCTCCTCATTGGGCTAAATCA-TATTGATAATTTTCTTTTG
64 CATTTTATG-A-T-TAGGCACTA-TAAGCACATT---CT-TCTCAGTA-GGATAA-ATGATATTG
* * * * * * * *** * * **
358313 CATAGA-ATTCTTTT-CTTTG---CCCTAT-TTT-CCTTA-AAACC--AAAGTTAATCCCTTAA-
119 -AT-GATTTTCTTTTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAA--AGTTAAT
* * * * * * * *
358367 ---ATAAGACAAG-C-ATCGAT---TCTC-GGAACTGTCTCCATTCATTTCAGGCTTGGGAACCT
180 CCCTTAA-ATAAGACAAGC-ATCGAT-TCTCGTACAGTCTCCATTC-TTTTAGGATTGGGAACCT
358423 AAAACACA-TTCCTCTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
241 AAAACACATTTCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
358487 TTTCC-TCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAA
305 TTTCCAT-CGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAA
* *
358551 TAATCCCCATTCTTTTCAGGATTAAGTGTTGTAAACATCGTCTTCTCATTAGGATACACGATATT
369 TAATCCCCATTCTTTTCAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATT
* *
358616 GATGCATTT-TTTCGCATGAAAGGCTTTTT-CCTGCCAATT
434 GATGC-TTTGTTTCGCAAGAAAGGCTTTTTCCCTACCAATT
* * * * * * *
358655 TTTGTAAAGCCCAAGTCCGTGCCTCAAATGAGAGAAATATGGATTCCTATAATGATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * * *
358720 TTTTATGACTAGGTACTATAAGCACATTCTCCTCATTAGGATAAACGATGTTGATGA-TTTCTTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTTT
* * *
358784 TGCATGGAAATCTTTTCTTTGCCATGTTTTCCTTAAAATC-------A-CCCTTAAATAAGACAA
131 TGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
* * * * * * *
358841 GCATCAATTCTCATAACAGTC-CTTATTATTTTCTGGATTGGGAAACTAAAACACATTCCCTTCA
196 GCATCGATTCTCGT-ACAGTCTC-CATTCTTTT-AGGATTGGGAACCTAAAACACATTTCCTTCA
* *
358905 TTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-TGAT
258 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTAT-A-
* * * * *
358969 AA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCTTGAATATTCATAGTAATCCCCATTATTTTT
321 AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATT-CTTTT
* * *** * *
359033 C-GGATTCGATGCCATAAACATAGTCTTCTCTTTAGGATACACGATATTAATGCTTTGGTTTCGC
385 CAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGC
* *
359097 AAGAAAGACTTTTTCCCTACCAGTT
449 AAGAAAGGCTTTTTCCCTACCAATT
* * **
359122 CTTGTAAAGTCTAAGTAT-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCACTC
1 TTTGTAAAGTCTAAGT-TCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
* * * *
359186 ATTTTATGGTTAGGCATTATAAGCACAATCTTCTTAGTAGGATAAATGATATTGATGATTTTCTT
65 ATTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTT
* * *
359251 TTGCTTAGAATTCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTAATCCCTTAAATAAGACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * * * *
359316 ACCATCAATTCTCATAACAGTCTCCACTCTTTTAGGAATGGGAACTTAAAACACATTTGCTTCAG
195 AGCATCGATTCTCGT-ACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACACATTTCCTTCAT
* * *
359381 TAGGATACTTGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTTCATCGTTTTATAAAG
259 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAAG
*
359446 AATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTAATAATAATCCCCATTCTTTTCAGG
324 AATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGG
*
359511 ATTAGGTATTGTAAACATAGTCTT-TCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAA
389 ATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAA
* * *
359575 AGGCTTTTTCCCCACTAGTT
454 AGGCTTTTTCCCTACCAATT
* * * * *
359595 TTTGTGAAGTCTTAGTTCGTGCCTCAAATGAGACAAACATAGATTCTTCTAATAATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * *
359660 TTTTATGATTTGGCACTAT------A-TCTCCTCA-TTGGCCTAAATCATATTGATGATTTTCTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGG-ATAAATGATATTGATGATTTTCTT
* * *
359717 TCGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCATAAATAAAACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * * * *
359782 AGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGTATTAGGAACATAAAGCAAATTCCCTTAA
195 AGCATCGATTCTCGT-ACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACACATTTCCTTCA
* *
359847 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCTTTCCACCGTTTTATAAA
258 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAA
* ** * * * * *
359912 GAATCAAAGCTTG-CTCTTAAATAAGACAATCATGTGTACTTATAACAATCACCAATCTTTTCAA
323 GAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAG
* *
359976 GATTAGGTATTG----C--A--------ATTAGGATACA-GAATATTGATGCTTTGTTTAGCAAG
388 GATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACG-ATATTGATGCTTTGTTTCGCAAG
* *
360026 AAAGGCTTTTTCCTTACAAATT
452 AAAGGCTTTTTCCCTACCAATT
* * * * *
360048 TTTGTAAAATCTATA-TTCGTGCCTTAAATGAGAGAAACATGGATTCCTATAATGATCTTCTTTC
1 TTTGTAAAGTCTA-AGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
* * * * * *
360112 ATTTTATGACTAGGTACTATAAGCACATTCTCCTCATTAGGATAAACGATGTTGATGA-TTTCTT
65 ATTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTT
* * * *
360176 TTGCATGGAAATCTTTTCTTTGCCATGTTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACA
130 TTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * * *
360241 AGCATCAATTCTCATAACAGTC-CTTATTATTTTCTGGATTGGGAAACTAAAACACATTCCCTTC
195 AGCATCGATTCTCGT-ACAGTCTC-CATTCTTTT-AGGATTGGGAACCTAAAACACATTTCCTTC
* *
360305 ATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-TGA
257 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTAT-A
* * * *
360369 TAA-TATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTCATAGTAATCCCCATTATTTT
321 -AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATT-CTTT
* * *** * * *
360433 TC-GGATTCGATGCCATAAACTTAGTCTTCTCTTTAGGATACACGATATTAATGCTTTGGTTTCG
384 TCAGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCG
360497 CAAGAAAGGCTTTTTCCCTACCAATT
448 CAAGAAAGGCTTTTTCCCTACCAATT
* * * *
360523 CTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* ** * * * * * *
360588 TTTTATGGTTAGGCTTTATAAGCACATTCTTCTCATTGGGCTAGATCATATTGATGATCTT-TTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTTT
* * *
360652 TGCCATAGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCATAGTTAATCCCTTAAATAAGACA
131 TG-CATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
** * * * *
360717 AGCATCGATTCTCGTAACAGTCTCGTTTTTTTTTCAGGATTAGGAACCTAAAACACATTCCCCCT
195 AGCATCGATTCTCGT-ACAGTCTC-CATTCTTTT-AGGATTGGGAACCTAAAACACATT-TCCTT
* * *
360782 CATTAGGATACATGACATTGTTGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCC-TCCTTTTATA
256 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATA
* * *
360846 AAGAATCAAAGTTTGTCTTTTAAATAAGACAATCACGAATACTCATAATAATCCCCATTTTTTTC
321 AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTC
* * * * ** * *
360911 AAGATTAGGTGTTGTAAACATCGTCTTGTCATTAGGATATACGATATTGATGCTTAATTTCGTAG
386 AGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAA
360976 GAAAGGCTTTTT-CCTACCAATT
451 GAAAGGCTTTTTCCCTACCAATT
* * *
360998 TTTGTTAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * * * *
361063 TTTTATGACTAGGTAGTATAAGCACATTCTCCACATTTA-GATAAAAGATATTGATGATTTTCTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCA-GTAGGATAAATGATATTGATGATTTTCTT
* * * * * * ** *
361127 TTGCATTGAATTTTTTTCCTTG-TCTCATTTTTCTTAAAATCAAAGTTCATTTCTCAAATAAGAC
130 TTGCATGGAATTCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGAC
* * * * * *
361191 AAGTATCGGTTTTCGTAACAGTC-CCTATTCTTTTCAGGATTGGGAAACAAAAACACATTCCCTT
194 AAGCATCGATTCTCGT-ACAGTCTCC-ATTCTTTT-AGGATTGGGAACCTAAAACACATTTCCTT
* *
361255 CATTAGGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGA
256 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTT-TT-A
* * *
361320 T-AA-AATCAAAGTTTGTCTCCTAAATAAGACAAGCATGAATACTCATAGTAATCCCCATTCTTT
319 TAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTC-TT
* *** * *
361383 TTC-GAATTCA-GTGCCATAAACATAGTCTTCTCATTAGGATACACAATATTAATGCTTTGGTTT
383 TTCAGGATT-AGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTT
* *
361446 CACAAGAAAGGCTTTTTCCCTACCAGTT
446 CGCAAGAAAGGCTTTTTCCCTACCAATT
* * * *
361474 CTTGTAAAGTCTAAGTTCGTGCCCCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
** * * *
361539 TTTTATGGCTAGGCAATATAAGCACATTTTTCTC-GATAGGATAAATGCTATTGATGATTTTCTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAG-TAGGATAAATGATATTGATGATTTTCTT
* *
361603 TTGC-TAGGAATTGTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAGAAGAC
130 TTGCAT-GGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGAC
* * * *
361667 AACCATCGATTCTCGTAATAGTCTCCACTCTTTT-GGTATTGGGAACCTAAAACACATTTCCTTT
194 AAGCATCGATTCTCGT-ACAGTCTCCATTCTTTTAGG-ATTGGGAACCTAAAACACATTTCCTTC
* * * * *
361731 AGTAGGATACTTGACATTTATGCTTTCGTGTCGCAAGAAAAGCTTTTCCTTT-CATTGTTTTATA
257 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCATCGTTTTATA
* * * *
361795 AAGAATCAAAGTTTGTCTCTTAAACATGACAATCATGAATACTGATAATAATCCACATTCTTTTC
321 AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTC
* ** *
361860 AGGATTAGGTATTGTAAACATAGTCTT-TCATTAGGATACATTATATTGATGCTTTGCTTCGCAA
386 AGGATTAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAA
* ** *
361924 GAAAGGCTTTTTCCCCATTAGTT
451 GAAAGGCTTTTTCCCTACCAATT
* * * * ** *
361947 TTTGTGAAGTCTTAGTTCGCGCCTCAAACGAGACAAACACAGATTCTTGTAATAATCTTCTTTCA
1 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
* * * * * * *
362012 TTTTATGATTTGGCACTATAAGCACATTCTCCTCATTGGGCTAAATCATATTGAGGATTTTCTTT
66 TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTTT
*
362077 TGCA-GAAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
131 TGCATG-GAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
** * * * * * * * * *
362141 AGCATCGATTCTTATAATAATCTTCATTCTTTTTAGTATGGGGAACATAAAACAAATTCCCTTAA
195 AGCATCGATTCTCGT-ACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACACATTTCCTTCA
* * *
362206 TTAGCATACATGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCTTTCCACCGTTTTATAAA
258 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAA
* ** * ** *
362271 GAATCAAAGTTTGTCTCTTAAATAAGACAATCACGTGTACTCATAACAATCCATATTCTTTTCAA
323 GAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAG
*
362336 GATTAGGTATTGTAAA
388 GATTAGGTGTTGTAAA
362352 TATTGTTGTT
Statistics
Matches: 6559, Mismatches: 1071, Indels: 556
0.80 0.13 0.07
Matches are distributed among these distances:
443 57 0.01
444 41 0.01
445 118 0.02
446 8 0.00
447 8 0.00
448 12 0.00
449 3 0.00
450 9 0.00
451 3 0.00
452 11 0.00
453 139 0.02
454 121 0.02
455 5 0.00
456 9 0.00
457 8 0.00
458 30 0.00
459 332 0.05
460 169 0.03
461 49 0.01
462 15 0.00
463 5 0.00
464 16 0.00
465 205 0.03
466 316 0.05
467 361 0.06
468 44 0.01
469 46 0.01
470 195 0.03
471 43 0.01
472 394 0.06
473 957 0.15
474 980 0.15
475 1164 0.18
476 454 0.07
477 176 0.03
478 56 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTCA
TTTTATGATTAGGCACTATAAGCACATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTTT
TGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
GCATCGATTCTCGTACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACACATTTCCTTCATTA
GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTATAAAGAA
TCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGAT
TAGGTGTTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAG
GCTTTTTCCCTACCAATT
Found at i:358587 original size:159 final size:158
Alignment explanation
Indices: 358424--361934 Score: 732
Period size: 158 Copynumber: 22.4 Consensus size: 158
358414 TGGGAACCTA
* * *
358424 AAACACATTCCTCTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCTT
*
358489 TCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAA
65 TCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAATAA
* * *
358554 TCCCCATTCTTTTCAGGATTAAGTGTTGT
130 TCCCCATTCTTTTCAGGATTAGGTATTAT
* * * *
358583 AAACATC-GTCTTCTCATTAGGATACACGATATTGATGCATTT-TTTCGCATGAAAGGC--TT-T
1 AAACA-CATTCCTCTCATTAGGATACACGATATTGATGC-TTTGTTTCGCAAGAAAAGCTTTTCT
* * * * ** * *
358643 TTCCTGCCAATTTTTGTAAAG--CCCAAGTCCGTGC-CTCAAATGAGAGA-AAT-ATGGATTC-C
64 TTCCT-CC--GTTTTATAAAGAATCAAAGTTTGT-CTCTTAAAT-A-AGACAATCATGAATTCTC
* ** * * * *
358702 TATAATGATCTTCTTTCATTTT-ATGACTAGGTACTAT
123 -ATAATAATCCCCATTC-TTTTCAGGATTAGGTATTAT
* * * * * * * * *
358739 AAGCACATT-CTCCTCATTAGGATAAACGATGTTGATGATTTCTTTTGCATGGAAATCTTTTCTT
1 AAACACATTCCT-CTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAAGCTTTTCTT
* * * * *
358803 TGCCAT--GTTTTCCTTAA-AATC--A------CCCTTAAATAAGACAAGCATCAATTCTCATAA
65 T-CC-TCCGTTTT-ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAA
* * ** * * * * *
358857 CAGTCCTTATTATTTTCTGGATTGGGAAACTA-
127 TAATCCCCATTCTTTTCAGGATTAGG-TATTAT
** * *
358889 AAACACATTCC-CTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACACATTCCTC-TCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCT
* * *
358953 TTCCACCGTTTT-TGATAA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCTTGAATAT-TCATA
64 TTCCTCCGTTTTAT-A-AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAAT-TCTCATA
* * * * ***
359015 GTAATCCCCATTATTTTTC-GGATTCGATGCCAT
126 ATAATCCCCATT-CTTTTCAGGATTAGGTATTAT
* * * * *
359048 AAACATAGTCTTCTCTTTAGGATACACGATATTAATGCTTTGGTTTCGCAAG-AAAGAC-TTT-T
1 AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAG-CTTTTCT
* * * * * * * *
359110 TCCCTACCAGTTCTTGTAAAG--TCTAAGTATGTGC-CTCAAATGAGACAAACATGGATTCT-AG
64 TTCCT-CC-GTT-TTATAAAGAATCAAAGTTTGT-CTCTTAAATAAGACAATCATGAATTCTCA-
* ** * *
359171 TAATGATCTTCACTCATTTT-ATGG-TTAGGCATTAT
124 TAATAATCCCCATTC-TTTTCA-GGATTAGGTATTAT
* * * * * * * * * * * **
359206 AAGCACAATCTTCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCTTAG-AATTCTTTTCT
1 AAACACATTCCTCTCATTAGGATACACGATATTGATG-CTTTGTTTCGC-AAGAAAAGCTTTTCT
** * ** * * *
359270 TTGCC-CTATTTTCCTTAAA-AA-CAAAGTTAATCCCTTAAATAAGACAACCATCAATTCTCATA
64 TT-CCTCCGTTTT--ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATA
* * * * * * *
359332 ACAGTCTCCACTCTTTT-AGGAATGGGAACTTA-
126 ATAATCCCCATTCTTTTCAGGATTAGGTA-TTAT
* * ** * *
359364 AAACACATTTGCT-TCAGTAGGATACTTGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCT
1 AAACACA-TTCCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTC-
* * *
359428 TTTCAT-CGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTAATAAT
63 TTTCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAAT
*
359492 AATCCCCATTCTTTTCAGGATTAGGTATTGT
128 AATCCCCATTCTTTTCAGGATTAGGTATTAT
* * * * **
359523 AAACATAGT-CTTTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTT-TCC
1 AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAAGCTTTTCTTT
* * ** ** * * * *
359586 CCACTAGTTTT-T-GTGAAGTCTTAGTTCGTGC-CTCAAATGAGACAAACAT-AGATTCTTC-TA
66 CCTC-CGTTTTATAAAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAATCATGA-ATTC-TCATA
** * * * * *
359646 ATAATCTTCTTTCATTTT-ATGATTTGGCACTAT
126 ATAATCCCCATTC-TTTTCAGGATTAGGTATTAT
* * * * * * * **
359679 --A-TC--T-C-CTCATT-GGCCTAAATC-ATATTGATGATTTTCTTTCGCATGGAATTCTTTTC
1 AAACACATTCCTCTCATTAGG-ATACA-CGATATTGATG-CTTTGTTTCGCAAGAAAAGCTTTTC
** * * ** * * * * *
359735 TTTGCC-CTATTTTCCTTAA-AATCAAAGTTAATCCCATAAATAAAACAAGCATCG-ATTCTCGT
63 TTT-CCTCCGTTTT-ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCAT-GAATTCTCAT
* * * * **
359797 AATAGTCTCCATTCTTTTTAGTATTAGG-AACAT
125 AATAATCCCCATTCTTTTCAGGATTAGGTATTAT
* * * * * *
359830 AAAGCAAATTCC-CTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTC
1 AAA-CACATTCCTC-TCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTC
* * ** * * *
359894 TTTCCACCGTTTTATAAAGAATCAAAGCTTG-CTCTTAAATAAGACAATCATGTGTACTTATAAC
63 TTTCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAAT
* * *
359958 AATCACCAATCTTTTCAAGATTAGGTA-T-T
128 AATCCCCATTCTTTTCAGGATTAGGTATTAT
* * * *
359987 ----GCA--------ATTAGGATACA-GAATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTTCC
1 AAACACATTCCTCTCATTAGGATACACG-ATATTGATGCTTTGTTTCGCAAGAAAAGC-TTTTCT
* **** * * * * * * *
360039 TTACAAATTTTTGT-AA-AATCTATA-TTCGTGC-CTTAAATGAGAGAAACATGGATTC-CTATA
64 TTCCTCCGTTTTATAAAGAATC-AAAGTTTGT-CTCTTAAATAAGACAATCATGAATTCTC-ATA
* ** * * * *
360099 ATGATCTTCTTTCATTTT-ATGACTAGGTACTAT
126 ATAATCCCCATTC-TTTTCAGGATTAGGTATTAT
* * * * * * * * *
360132 AAGCACATT-CTCCTCATTAGGATAAACGATGTTGATGATTTCTTTTGCATGGAAATCTTTTCTT
1 AAACACATTCCT-CTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAAGCTTTTCTT
* * * * * *
360196 TGCCAT--GTTTTCCTTAA-AATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCATAA
65 T-CC-TCCGTTTT-ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAA
* * ** * * * * *
360258 CAGTCCTTATTATTTTCTGGATTGGGAAACTA-
127 TAATCCCCATTCTTTTCAGGATTAGG-TATTAT
** * *
360290 AAACACATTCC-CTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACACATTCCTC-TCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCT
* * * * *
360354 TTCCACCGTTTT-TGATAA-TATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTCATAG
64 TTCCTCCGTTTTAT-A-AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAA
* * * ***
360417 TAATCCCCATTATTTTTC-GGATTCGATGCCAT
127 TAATCCCCATT-CTTTTCAGGATTAGGTATTAT
** * * * * *
360449 AAACTTAGTCTTCTCTTTAGGATACACGATATTAATGCTTTGGTTTCGCAAGAAAGGC-TTT-TT
1 AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCTT
* * * * * * * * *
360512 CCCTACCAATTCTTGTAAAG--TCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGT
65 TCCT-CC-GTT-TTATAAAGAATCAAAGTTTGT-CTCTTAAATAAGACAATCATGAATTCTCA-T
** **
360573 AAGGATCTTCATTCATTTT-ATGG-TTAGGCT-TTAT
125 AATAATCCCCATTC-TTTTCA-GGATTAGG-TATTAT
* * * * * **
360607 AAGCACATTCTTCTCATTGGGCTAGATC-ATATTGATGATCTTT-TTT-GCCATAG-AATTCTTT
1 AAACACATTCCTCTCATTAGGATACA-CGATATTGATG--CTTTGTTTCG-CA-AGAAAAGCTTT
** * * * ** * *
360668 TCTTTACC-CTATTTTCCTTAA-AATCATAGTTAATCCCTTAAATAAGACAAGCATCG-ATTCTC
61 TCTTT-CCTCCGTTTT-ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCAT-GAATTCTC
* * * *** * * *
360730 GTAACAGTCTCGTTTTTTTTTCAGGATTAGGAACCTA-
123 ATAATAATC-CCCATTCTTTTCAGGATTAGGTA-TTAT
* * * * **
360767 AAACACATTCCCCCTCATTAGGATACATGACATTGTTGCTTTGGTGCCGCAAGAAAAGCTTTTCT
1 AAACACATT-CCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCT
* * *
360832 TTCCTCC-TTTTATAAAGAATCAAAGTTTGTCTTTTAAATAAGACAATCACGAATACTCATAATA
64 TTCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAATA
* * * *
360896 ATCCCCATTTTTTTCAAGATTAGGTGTTGT
129 ATCCCCATTCTTTTCAGGATTAGGTATTAT
* * * * ** * * *
360926 AAACATC-GTCTTGTCATTAGGATATACGATATTGATGCTTAATTTCGTAGGAAAGGC--TT-TT
1 AAACA-CATTCCTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAAGCTTTTCTT
* * * * * * * **
360987 TCCTACCAATTTTTGTTAAG--TCTAAGTTCATG-C-CTCAAATAAGACAAACATGGATTCTTGT
65 TCCT-CC--GTTTTATAAAGAATCAAAGTT--TGTCTCTTAAATAAGACAATCATGAATTCTCAT
* ** * * * *
361048 AATGATCTTCTTTCATTTT-ATGACTAGGTAGTAT
125 AATAATCCCCATTC-TTTTCAGGATTAGGTATTAT
* * * * * * * * ***
361082 AAGCACATT-CTCCACATTTA-GATAAAAGATATTGATGATTTTCTTTTGCATTG-AATTTTTTT
1 AAACACATTCCT-CTCA-TTAGGATACACGATATTGATG-CTTTGTTTCGCA-AGAAAAGCTTTT
** * * ** * * * *
361144 CCTTGT-CTCATTTTTCTTAA-AATCAAAGTTCATTTCTCAAATAAGACAAGT-ATCG-GTTTTC
62 -CTT-TCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAA-TCAT-GAATTCTC
* * * * * * ** *
361205 GTAACAGTCCCTATTCTTTTCAGGATTGGGAAACAA
123 ATAATAATCCCCATTCTTTTCAGGATTAGGTATTAT
* * * *
361241 AAACACATTCC-CTTCATTAGGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACACATTCCTC-TCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCT
* * * * *
361305 TTCCACCGTTATTGAT-AA-AATCAAAGTTTGTCTCCTAAATAAGACAAGCATGAATACTCATAG
64 TTCCTCCGTT-TT-ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAA
* ***
361368 TAATCCCCATTCTTTTTC-GAATTCA-GTGCCAT
127 TAATCCCCATTC-TTTTCAGGATT-AGGTATTAT
* * * * * * *
361400 AAACATAGTCTTCTCATTAGGATACACAATATTAATGCTTTGGTTTCACAAGAAAGGC-TTT-TT
1 AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTTCTT
* * * * ** * * *
361463 CCCTACCAGTTCTTGTAAAG--TCTAAGTTCGTGC-CCCAAATGAGACAAACATGGATTCT-AGT
65 TCCT-CC-GTT-TTATAAAGAATCAAAGTTTGT-CTCTTAAATAAGACAATCATGAATTCTCA-T
* ** * * *
361524 AATGATCTTCATTCATTTT-ATGG-CTAGGCAATAT
125 AATAATCCCCATTC-TTTTCA-GGATTAGGTATTAT
* ** * * * * * * * **
361558 AAGCACATTTTTCTCGA-TAGGATAAATGCTATTGATGATTTTCTTTTGCTAGGAATTG-TTTTC
1 AAACACATTCCTCTC-ATTAGGATACACGATATTGATG-CTTTGTTTCGC-AAGAAAAGCTTTTC
** * * ** * * * *
361621 TTTGCC-CTATTTTCCTTAA-AATCAAAGTTAATCCCTTAAAGAAGACAACCATCG-ATTCTCGT
63 TTT-CCTCCGTTTT-ATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCAT-GAATTCTCAT
* * * * * *
361683 AATAGTCTCCACTCTTTT--GGTATTGGGAACCTA-
125 AATAATCCCCATTCTTTTCAGG-ATTAGGTA-TTAT
* * ** * * *
361716 AAACACATTTCCT-TTAGTAGGATACTTGACATTTATGCTTTCGTGTCGCAAGAAAAGCTTTTCC
1 AAACACA-TTCCTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAAGCTTTT-C
* * * * * *
361780 TTTCAT-TGTTTTATAAAGAATCAAAGTTTGTCTCTTAAACATGACAATCATGAATACTGATAAT
63 TTTCCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAAT
* *
361844 AATCCACATTCTTTTCAGGATTAGGTATTGT
128 AATCCCCATTCTTTTCAGGATTAGGTATTAT
* * * ** * *
361875 AAACATAGT-CTTTCATTAGGATACATTATATTGATGCTTTGCTTCGCAAGAAAGGCTTTT
1 AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAAGCTTTT
361935 TCCCCATTAG
Statistics
Matches: 2367, Mismatches: 714, Indels: 544
0.65 0.20 0.15
Matches are distributed among these distances:
142 6 0.00
143 54 0.02
144 43 0.02
145 1 0.00
148 3 0.00
149 14 0.01
150 75 0.03
151 70 0.03
152 45 0.02
153 7 0.00
154 7 0.00
155 24 0.01
156 222 0.09
157 181 0.08
158 736 0.31
159 714 0.30
160 114 0.05
161 49 0.02
162 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
AAACACATTCCTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAAGCTTTTCTTT
CCTCCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATTCTCATAATAAT
CCCCATTCTTTTCAGGATTAGGTATTAT
Found at i:362665 original size:20 final size:20
Alignment explanation
Indices: 362640--362710 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
362630 ACCCTGAAAA
362640 GTATCGATACATATTTAAAT
1 GTATCGATACATATTTAAAT
* **
362660 GTATCGATACAGA-TTGCAT
1 GTATCGATACATATTTAAAT
362679 AGTATCGATACATATTTAAAT
1 -GTATCGATACATATTTAAAT
362700 GTATCGATACA
1 GTATCGATACA
362711 GATTGCATAG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 4 0.09
20 35 0.81
21 4 0.09
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (20 bp):
GTATCGATACATATTTAAAT
Found at i:362694 original size:40 final size:40
Alignment explanation
Indices: 362639--362730 Score: 184
Period size: 40 Copynumber: 2.3 Consensus size: 40
362629 AACCCTGAAA
362639 AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
1 AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
362679 AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
1 AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
362719 AGTATCGATACA
1 AGTATCGATACA
362731 CACAAATACG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (40 bp):
AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
Found at i:362723 original size:20 final size:20
Alignment explanation
Indices: 362660--362730 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
362650 ATATTTAAAT
362660 GTATCGATACAGATTGCATA
1 GTATCGATACAGATTGCATA
* * *
362680 GTATCGATACATATT-TAAA
1 GTATCGATACAGATTGCATA
362699 TGTATCGATACAGATTGCATA
1 -GTATCGATACAGATTGCATA
362720 GTATCGATACA
1 GTATCGATACA
362731 CACAAATACG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 2 0.05
20 39 0.91
21 2 0.05
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (20 bp):
GTATCGATACAGATTGCATA
Found at i:362744 original size:40 final size:39
Alignment explanation
Indices: 362639--362751 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 39
362629 AACCCTGAAA
* *
362639 AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
1 AGTATCGATACACA-TCAAATGTATCGATACAGATTGCAT
* *
362679 AGTATCGATACATATTTAAATGTATCGATACAGATTGCAT
1 AGTATCGATACACA-TCAAATGTATCGATACAGATTGCAT
362719 AGTATCGATACACA-CAAATACGTATCGATACAG
1 AGTATCGATACACATCAAAT--GTATCGATACAG
362752 GACATTGGCA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
38 4 0.06
40 65 0.94
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (39 bp):
AGTATCGATACACATCAAATGTATCGATACAGATTGCAT
Found at i:362816 original size:53 final size:53
Alignment explanation
Indices: 362720--362856 Score: 220
Period size: 53 Copynumber: 2.6 Consensus size: 53
362710 AGATTGCATA
* * *
362720 GTATCGATACACACAAATACGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACACTAGCAGTAGCCAAATTT
*
362774 GTATCGATACACACAATATGTATCGATACAGGTCACTAGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACACTAGCAGTAGCCAAATTT
*
362827 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
362857 TCACTGTTCA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 64 0.82
54 14 0.18
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACACTAGCAGTAGCCAAATTT
Found at i:366740 original size:13 final size:13
Alignment explanation
Indices: 366722--366746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
366712 CATAAAGTGT
366722 TGTATCGATACAA
1 TGTATCGATACAA
366735 TGTATCGATACA
1 TGTATCGATACA
366747 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:366850 original size:20 final size:20
Alignment explanation
Indices: 366825--366874 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
366815 CGATACATTA
366825 TATCGATACACCAATCTTGG
1 TATCGATACACCAATCTTGG
* *
366845 TATCGATACACCGATCTTTG
1 TATCGATACACCAATCTTGG
366865 TATCGATACA
1 TATCGATACA
366875 TGCAGGCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (20 bp):
TATCGATACACCAATCTTGG
Found at i:366991 original size:52 final size:52
Alignment explanation
Indices: 366863--366983 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
366853 CACCGATCTT
*
366863 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
366915 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
366967 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
366984 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:374153 original size:12 final size:11
Alignment explanation
Indices: 374121--374191 Score: 54
Period size: 12 Copynumber: 6.2 Consensus size: 11
374111 GTTCTTTTCC
*
374121 AAAAAAAGAAAC
1 AAAAAAA-AAAG
374133 AAAACAAAAAAGG
1 AAAA-AAAAAA-G
374146 AAAAAAAAAAG
1 AAAAAAAAAAG
*
374157 AAAAAAGAAGAG
1 AAAAAA-AAAAG
* *
374169 AAGAAACAAA-
1 AAAAAAAAAAG
*
374179 AAAAAAAGAAG
1 AAAAAAAAAAG
374190 AA
1 AA
374192 GAAGGGAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
10 7 0.15
11 11 0.23
12 22 0.47
13 7 0.15
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:374155 original size:19 final size:19
Alignment explanation
Indices: 374121--374181 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
374111 GTTCTTTTCC
*
374121 AAAAA-AAGAAACAAAACA
1 AAAAAGAAGAAAAAAAACA
*
374139 AAAAAGGAA-AAAAAAAAGA
1 AAAAA-GAAGAAAAAAAACA
* *
374158 AAAAAGAAGAGAAGAAACA
1 AAAAAGAAGAAAAAAAACA
374177 AAAAA
1 AAAAA
374182 AAAAGAAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
18 8 0.23
19 25 0.71
20 2 0.06
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAAGAAGAAAAAAAACA
Found at i:374193 original size:29 final size:29
Alignment explanation
Indices: 374121--374203 Score: 82
Period size: 28 Copynumber: 2.9 Consensus size: 29
374111 GTTCTTTTCC
* * *
374121 AAAAAAAGAAACAA-AACA-AAAAAGGAAA
1 AAAAAAAGAAAAAAGAAGAGAAAAA-CAAA
374149 AAAAAAAGAAAAAAGAAGAGAAGAAACAAA
1 AAAAAAAGAAAAAAGAAGAGAA-AAACAAA
* *
374179 AAAAAAAG-AAGAAGAAGGGAAAAAC
1 AAAAAAAGAAAAAAGAAGAGAAAAAC
374204 CCCTTTTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
28 17 0.36
29 14 0.30
30 13 0.28
31 3 0.06
ACGTcount: A:0.78, C:0.05, G:0.17, T:0.00
Consensus pattern (29 bp):
AAAAAAAGAAAAAAGAAGAGAAAAACAAA
Found at i:374200 original size:26 final size:24
Alignment explanation
Indices: 374126--374195 Score: 80
Period size: 23 Copynumber: 3.1 Consensus size: 24
374116 TTTCCAAAAA
*
374126 AAGAAACAAAACAAAAAAG--GA-
1 AAGAAACAAAAGAAAAAAGAAGAG
374147 AA-AAA-AAAAGAAAAAAGAAGAG
1 AAGAAACAAAAGAAAAAAGAAGAG
374169 AAGAAACAAAA-AAAAAAGAAGAAG
1 AAGAAACAAAAGAAAAAAGAAG-AG
374193 AAG
1 AAG
374196 GGAAAAACCC
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
19 11 0.26
20 3 0.07
21 4 0.10
22 2 0.05
23 13 0.31
24 9 0.21
ACGTcount: A:0.79, C:0.04, G:0.17, T:0.00
Consensus pattern (24 bp):
AAGAAACAAAAGAAAAAAGAAGAG
Found at i:375211 original size:27 final size:27
Alignment explanation
Indices: 375171--375352 Score: 139
Period size: 27 Copynumber: 6.2 Consensus size: 27
375161 GCACTCTTTT
* *
375171 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
375198 CATTTTAAGCCCACAACTCCGTGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCA--C
* *
375227 TTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 -----CCTTTTAAGCCCACAACTCCGTGGCAC
* *
375259 CCGTTTAAGCCCACAACTCCATGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCA--C
* *
375288 TTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 -----CCTTTTAAGCCCACAACTCCGTGGCAC
*
375320 CCTTTTAAGCCCACAACTCTGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
375347 TCTTTT
1 CCTTTT
375353 TCCTTTTAAG
Statistics
Matches: 123, Mismatches: 18, Indels: 28
0.73 0.11 0.17
Matches are distributed among these distances:
27 74 0.60
29 2 0.02
32 2 0.02
34 45 0.37
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:375246 original size:34 final size:33
Alignment explanation
Indices: 375148--375875 Score: 565
Period size: 34 Copynumber: 22.6 Consensus size: 33
375138 TTCTTAAAGC
*
375148 CCACAACTACGTGGCA-CTCTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCACCT-TTTTCCTTTTAAGT
* * *
375181 CCACAACTCTGTGGCA-C-----CATTTTAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
*
375208 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGT
* *
375242 CCACAACTCCGTGGCA-C-----CCGTTTAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* *
375269 CCACAACTCCATGGCACTCTTTTTCCTTCTAAGT
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGT
*
375303 CCACAACTCCGTGGCA-C-----CCTTTTAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
*
375330 CCACAACTCTGTGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGT
* ** * ** *
375364 CCACGACTCTATGGCACCTTATT--TTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* *
375395 CCACAATTCCGTGGCACTCTTTTACCCTTTTAAAGT
1 CCACAACTCCGTGGCAC-CTTTT-TCCTTTT-AAGT
* * * *
375431 CCACAACCCCGTGGCACCTTGTTGCTTCTAAGT
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* * *
375464 CCACAACTCCGTAGCACCTTGTTCCTTTTAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* *
375497 CCATAACTCCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGT
*
375531 CCACAACTCCGTGGCA-C-----CCTTTTAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* *
375558 CCACAACTCCGTGGCACTCTTTTCCCTTTTAAGC
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGT
*
375592 CCAAAACTCCGTGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGT
* ** * ** *
375626 CCACGACTCTATGGCACCTTCTT--TTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
*
375657 CCACAATTCCGTGGCACTCTTTTTCCCTTTTAAAGT
1 CCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGT
* *
375693 CCACAACCCCGTGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* * *
375726 CCACGACTCTGTGGCACC---TTCCTTTCAAAGT
1 CCACAACTCCGTGGCACCTTTTTCCTTT-TAAGT
* * * *
375757 CCGCGACTCCGTGGCACCTTTTT-C---AAATT
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
*
375786 CCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGC
1 CCACAACTCCGTGGCAC-CTTTTTC-CTTTT-AAGT
*
375822 CCACAACTCCGTGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
* *
375855 CCACAACTTCGTGGCATCTTT
1 CCACAACTCCGTGGCACCTTT
375876 CACCCTTTTC
Statistics
Matches: 552, Mismatches: 93, Indels: 100
0.74 0.12 0.13
Matches are distributed among these distances:
27 92 0.17
29 23 0.04
30 13 0.02
31 56 0.10
32 13 0.02
33 113 0.20
34 168 0.30
35 19 0.03
36 55 0.10
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.32
Consensus pattern (33 bp):
CCACAACTCCGTGGCACCTTTTTCCTTTTAAGT
Found at i:375256 original size:61 final size:61
Alignment explanation
Indices: 375144--375839 Score: 554
Period size: 61 Copynumber: 10.9 Consensus size: 61
375134 TACCTTCTTA
* * *
375144 AAGCCCACAACTACGTGGCACTC-TTTTCCTTTTAAGTCCACAACTCTGTGGCACCATTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* *
375204 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* *
375265 AAGCCCACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * ** *
375326 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACGACTCTATGGCACCTTATTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACC--CTTTT
* * *
375389 CAAAGCCCACAATTCCGTGGCACTCTTTTACCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTT
1 --AAGCCCACAACTCCGTGGCACTCTTTT-TCCTTTT-AAGTCCACAACTCCGTGGCACC-----
*
375454 GCTTCT
57 -CTTTT
* * * * *
375460 AAGTCCACAACTCCGTAGCAC-CTTGTTCCTTTTAAGCCCATAACTCCGTGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA--C-----CCT
*
375524 TCT
59 TTT
* *
375527 AAGTCCACAACTCCGTGGCA--C-----CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-------CCCT
375585 TTT
59 TTT
* * **
375588 AAGCCCAAAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACGACTCTATGGCACCTTCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACC--CTTTT
* *
375651 CAAAGCCCACAATTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTT
1 --AAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTT-AAGTCCACAACTCCGTGGCA-C-----
375716 CCTTTT
56 CCTTTT
* * * * * * *
375722 AAGTCCACGACTCTGTGGCAC-C---TTCCTTTCAAAGTCCGCGACTCCGTGGCACCTTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTT-TAAGTCCACAACTCCGTGGCACCCTTTT
** *
375780 CAAATTCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGCCCACAACTCCGTGGCACC
1 --AAGCCCACAACTCCGTGGCACTCTTTTTC-CTTTT-AAGTCCACAACTCCGTGGCACC
375840 TTGTTCCTTT
Statistics
Matches: 521, Mismatches: 64, Indels: 97
0.76 0.09 0.14
Matches are distributed among these distances:
58 5 0.01
60 40 0.08
61 193 0.37
63 11 0.02
64 25 0.05
65 76 0.15
66 32 0.06
67 64 0.12
68 29 0.06
69 35 0.07
71 9 0.02
73 2 0.00
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (61 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:375463 original size:100 final size:96
Alignment explanation
Indices: 375148--375875 Score: 527
Period size: 100 Copynumber: 7.6 Consensus size: 96
375138 TTCTTAAAGC
* * * *
375148 CCACAACTACGTGGCACTCTT-TTCCTTTTAAGTCCACAACTCTGTGGCACC--ATTTT-AAGCC
1 CCACAACTCCGTGGCAC-CTTCTT-CTTCTAAGTCCACAACTCCGTGGCACCTTTTTTTAAAGCC
* *
375209 CACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
64 CACAACTCCGTGGCACTCTTTTCCCTTTTAAGT
* * * *
375242 CCACAACTCCGTGGCACC--C--GTT-TAAGCCCACAACTCCATGGCACTCTTTTTCCTTCTAAG
1 CCACAACTCCGTGGCACCTTCTTCTTCTAAGTCCACAACTCCGTGGCAC-CTTTTT--TT-AAAG
* *
375302 TCCACAACTCCGTGGCA-------CCCTTTTAAGC
62 CCCACAACTCCGTGGCACTCTTTTCCCTTTTAAGT
* * * * ** *
375330 CCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACGACTCTATGGCACCTTATTTTCAAAGC
1 CCACAACTCCGTGGCAC-CTTCTT-CTTCTAAGTCCACAACTCCGTGGCACCTT-TTTTTAAAGC
*
375395 CCACAATTCCGTGGCACTCTTTTACCCTTTTAAAGT
63 CCACAACTCCGTGGCACTCTTTT-CCCTTTT-AAGT
* * * *
375431 CCACAACCCCGTGGCACCTTGTTGCTTCTAAGTCCACAACTCCGTAGCACCTTGTTCCTTTTAAG
1 CCACAACTCCGTGGCACCTTCTT-CTTCTAAGTCCACAACTCCGTGGCACCTT-TT--TTTAAAG
* * *
375496 CCCATAACTCCGTGGCACTCTTTTTCCTTCTAAGT
62 CCCACAACTCCGTGGCACTCTTTTCCCTTTTAAGT
* *
375531 CCACAACTCCGTGGCACC--C-T-TT-TAAGCCCACAACTCCGTGGCACTCTTTTCCCTTTTAAG
1 CCACAACTCCGTGGCACCTTCTTCTTCTAAGTCCACAACTCCGTGGCAC-CTTTT---TTTAAAG
* *
375591 CCCAAAACTCCGTGGCACTCTTTTTCCTTTTAAGT
62 CCCACAACTCCGTGGCACTCTTTTCCCTTTTAAGT
* ** * * *
375626 CCACGACTCTATGGCACCTTCTT-TTCAAAGCCCACAATTCCGTGGCACTCTTTTTCCCTTTTAA
1 CCACAACTCCGTGGCACCTTCTTCTTCTAAGTCCACAACTCCGTGGCAC-C--TTT---TTTTAA
* *
375690 AGTCCACAACCCCGTGGCAC-CTTGTT-CCTTTTAAGT
60 AGCCCACAACTCCGTGGCACTCTT-TTCCCTTTTAAGT
* * * * * * * **
375726 CCACGACTCTGTGGCACCTTCCT-TTCAAAGTCCGCGACTCCGTGGCACC-TTTTTCAAATTCCA
1 CCACAACTCCGTGGCACCTTCTTCTTCTAAGTCCACAACTCCGTGGCACCTTTTTTTAAAGCCCA
* *
375789 CAACTCCGTGGCACTCTTTTTCTCTTTTAAAGC
66 CAACTCCGTGGCACTC-TTTTCCCTTTT-AAGT
* * * *
375822 CCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTGGCATCTTT
1 CCACAACTCCGTGGCACCTTCTT-CTTCTAAGTCCACAACTCCGTGGCACCTTT
375876 CACCCTTTTC
Statistics
Matches: 515, Mismatches: 73, Indels: 87
0.76 0.11 0.13
Matches are distributed among these distances:
88 43 0.08
89 4 0.01
91 2 0.00
92 18 0.03
93 27 0.05
94 46 0.09
95 110 0.21
96 24 0.05
97 2 0.00
98 23 0.04
99 25 0.05
100 114 0.22
101 49 0.10
102 27 0.05
104 1 0.00
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.32
Consensus pattern (96 bp):
CCACAACTCCGTGGCACCTTCTTCTTCTAAGTCCACAACTCCGTGGCACCTTTTTTTAAAGCCCA
CAACTCCGTGGCACTCTTTTCCCTTTTAAGT
Found at i:375579 original size:27 final size:27
Alignment explanation
Indices: 375521--375580 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
375511 CACTCTTTTT
* *
375521 CCTTCTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
375548 CCTTTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
375575 TCTTTT
1 CCTTTT
375581 CCCTTTTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.20, C:0.38, G:0.13, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:375794 original size:29 final size:29
Alignment explanation
Indices: 375722--375810 Score: 115
Period size: 29 Copynumber: 3.0 Consensus size: 29
375712 TGTTCCTTTT
*
375722 AAGTCCACGACTCTGTGGCACCTTCCTTTCA
1 AAGTCCACGACTCCGTGGCACCTT--TTTCA
*
375753 AAGTCCGCGACTCCGTGGCACCTTTTTCA
1 AAGTCCACGACTCCGTGGCACCTTTTTCA
* *
375782 AATTCCACAACTCCGTGGCACTCTTTTTC
1 AAGTCCACGACTCCGTGGCAC-CTTTTTC
375811 TCTTTTAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
29 23 0.44
30 7 0.13
31 22 0.42
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.30
Consensus pattern (29 bp):
AAGTCCACGACTCCGTGGCACCTTTTTCA
Found at i:375987 original size:33 final size:33
Alignment explanation
Indices: 375877--376013 Score: 217
Period size: 32 Copynumber: 4.2 Consensus size: 33
375867 GGCATCTTTC
*
375877 ACCCTTTTC-AAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
375909 GCCCTTCTC-AAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
375941 ACCC-TCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
375973 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
376006 ACCCTTCT
1 ACCCTTCT
376014 AAGCCCAATA
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
31 4 0.04
32 58 0.60
33 34 0.35
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:376071 original size:49 final size:49
Alignment explanation
Indices: 376013--376574 Score: 614
Period size: 49 Copynumber: 11.8 Consensus size: 49
376003 GCAACCCTTC
*
376013 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
376062 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
376105 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
376154 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
376203 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
376246 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
376295 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
376338 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
376387 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
376430 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * * *
376482 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C---CT-TCATCTT
* * * * *
376536 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
376575 TCTTTATCAA
Statistics
Matches: 435, Mismatches: 46, Indels: 59
0.81 0.09 0.11
Matches are distributed among these distances:
43 153 0.35
45 4 0.01
47 3 0.01
49 196 0.45
50 1 0.00
52 39 0.09
53 1 0.00
54 37 0.09
55 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:376175 original size:92 final size:88
Alignment explanation
Indices: 376059--376517 Score: 553
Period size: 92 Copynumber: 5.0 Consensus size: 88
376049 GCACCTTCAT
* * * * * *
376059 CTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA-C-CTTTAAGTCCAATATCGTTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTTAAGTCCAATGTAGCTG
*
376122 GCCTTGAATCAGCATATTGGCACCTTCAC
66 GCCTTGAATCAGCACATTGG------CAC
* *
376151 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--C-TCTTTAAGTCCAATGTA
376216 GCTGGCCTTGAATCAGCACATTGGCAC
62 GCTGGCCTTGAATCAGCACATTGGCAC
* *
376243 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--C-TCTTTAAGTCCAATGTA
*
376308 GCTGGCCTTGAATTAGCACATTGGCAC
62 GCTGGCCTTGAATCAGCACATTGGCAC
376335 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--C-TCTTTAAGTCCAATGTA
376400 GCTGGCCTTGAATCAGCACATTGGCAC
62 GCTGGCCTTGAATCAGCACATTGGCAC
* *
376427 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA------CC-TCTTTAAGTCCAAT
376492 GTAGCTGGCCTTGAATCAGCACATTG
59 GTAGCTGGCCTTGAATCAGCACATTG
376518 ACATCTTTTT
Statistics
Matches: 336, Mismatches: 20, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
92 258 0.77
95 40 0.12
96 1 0.00
97 1 0.00
98 36 0.11
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (88 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTTAAGTCCAATGTAGCTG
GCCTTGAATCAGCACATTGGCAC
Found at i:376272 original size:141 final size:141
Alignment explanation
Indices: 376008--376517 Score: 693
Period size: 141 Copynumber: 3.6 Consensus size: 141
375998 CGGTGGCAAC
*
376008 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
* *
376073 TAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATA
65 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
376138 TTGGCACCTTCA
130 TTGGCACCTTCA
* *
376150 CCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
376215 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
376280 TAGCACCTTCA
131 TGGCACCTTCA
* * * * *
376291 TCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* * *
376350 AGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
66 AGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCA
*
376415 GCACATTGG------CA
125 GCATATTGGCACCTTCA
* *
376426 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
376491 TGTAGCTGGCCTTGAATCAGCACATTG
63 TGTAGCTGGCCTTGAATCAGCACATTG
376518 ACATCTTTTT
Statistics
Matches: 327, Mismatches: 26, Indels: 28
0.86 0.07 0.07
Matches are distributed among these distances:
135 80 0.24
137 1 0.00
139 1 0.00
141 204 0.62
142 5 0.02
144 36 0.11
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (141 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
TGGCACCTTCA
Found at i:376505 original size:52 final size:54
Alignment explanation
Indices: 376427--376576 Score: 196
Period size: 52 Copynumber: 2.8 Consensus size: 54
376417 ACATTGGCAC
376427 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACA-CCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTCTCAT
* * * *
376479 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTCTCAT
* * * * * *
376533 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATC
376577 TTTATCAATT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
52 39 0.47
53 6 0.07
54 38 0.46
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTCTCAT
Found at i:376561 original size:54 final size:53
Alignment explanation
Indices: 376427--376579 Score: 200
Period size: 54 Copynumber: 2.9 Consensus size: 53
376417 ACATTGGCAC
*
376427 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACA-CCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCTTTTTCCAT
* * *
376479 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCTTTTTC-CAT
* * * * * *
376533 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCTTT
376580 ATCAATTTTC
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
52 39 0.45
53 6 0.07
54 41 0.48
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCTTTTTCCAT
Found at i:377412 original size:13 final size:13
Alignment explanation
Indices: 377394--377418 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
377384 CATAAAGTGT
377394 TGTATCGATACAA
1 TGTATCGATACAA
377407 TGTATCGATACA
1 TGTATCGATACA
377419 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:377416 original size:33 final size:33
Alignment explanation
Indices: 377374--377440 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
377364 TTCAACGATT
377374 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
377407 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
377440 T
1 T
377441 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:377521 original size:20 final size:20
Alignment explanation
Indices: 377496--377545 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
377486 CGATACATTA
377496 TATCGATACACCAATCTTGG
1 TATCGATACACCAATCTTGG
* *
377516 TATCGATACACCGATCTTTG
1 TATCGATACACCAATCTTGG
377536 TATCGATACA
1 TATCGATACA
377546 TGCAGGCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (20 bp):
TATCGATACACCAATCTTGG
Found at i:377662 original size:52 final size:52
Alignment explanation
Indices: 377534--377654 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
377524 CACCGATCTT
*
377534 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
377586 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
377638 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
377655 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:378585 original size:13 final size:13
Alignment explanation
Indices: 378567--378592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
378557 TACAGCAAGT
378567 ATGTATCGATACA
1 ATGTATCGATACA
378580 ATGTATCGATACA
1 ATGTATCGATACA
378593 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:383413 original size:21 final size:21
Alignment explanation
Indices: 383380--383420 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
383370 CTTAGTAAAA
383380 ATACATATTGTATCAATACAT
1 ATACATATTGTATCAATACAT
*
383401 ATAC-TATTGGTATTAATACA
1 ATACATATT-GTATCAATACA
383421 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.39
Consensus pattern (21 bp):
ATACATATTGTATCAATACAT
Found at i:383596 original size:53 final size:53
Alignment explanation
Indices: 383500--383636 Score: 220
Period size: 53 Copynumber: 2.6 Consensus size: 53
383490 AGATTGCATA
* *
383500 GTATCGATACACACAAATATGTATCGATGCAGGACATTAGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACACTAGCAGTAGCCAAATTT
* *
383554 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACACTAGCAGTAGCCAAATTT
*
383607 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
383637 TTGGTAGTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 64 0.82
54 14 0.18
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACACTAGCAGTAGCCAAATTT
Found at i:383679 original size:10 final size:10
Alignment explanation
Indices: 383660--383690 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
383650 AATCTCATTT
*
383660 TCACTGTTCA
1 TCACTATTCA
383670 TCACTATTCA
1 TCACTATTCA
383680 TCACTATTCA
1 TCACTATTCA
383690 T
1 T
383691 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (10 bp):
TCACTATTCA
Found at i:383788 original size:13 final size:13
Alignment explanation
Indices: 383770--383795 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
383760 TCACTATTCA
383770 TGTATCGATACAT
1 TGTATCGATACAT
383783 TGTATCGATACAT
1 TGTATCGATACAT
383796 CATAAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:385538 original size:474 final size:474
Alignment explanation
Indices: 384588--388438 Score: 4294
Period size: 474 Copynumber: 8.1 Consensus size: 474
384578 GCTCACAATT
* * * * * * *
384588 GTCTTCTCATTAGGACACACGATATTGACGCTTTGTTTAGCTAGAAAGGCTTTTTCCTTACAAAT
1 GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTTCCCTCCTAGT
* * *
384653 TTTTGTAAAGTCTATGTTCGTGCCTTAAGTGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
66 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
* * * * * * *
384718 ATTTTTTCAATAACTAGGTACTACAAGAACATTCTTCTCGTTAGGATAAACGATATTGATGATTT
131 A--TTTT--ATGATTAGGCACTATAAGCACATTCTTCTAGTTAGGATAAATGATATTGATGATTT
** * * *
384783 T-TTTCGCATGGAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAAAGTTTATCCCTGAAATAA
192 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAA
* * * * * * * * *
384847 GACAAGCATCAATTCTCATAACCGTC-CTTATTATTTTCGAGATTGGCAAACTAAAACACATTCC
257 GACAAGCATCGATTCTCGTAACAGTCTC-CATTCTTTTAG-GATTGGGAACCTAAAACAAATTCC
* * *
384911 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTGCCACCGTTTT
320 CTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * * **
384976 -TGATAA-AATTAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTCCTAGCAATCCCCATTC
385 AT-A-AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTC
* * * * *
385039 TCTTTCGGATT-CGGTGCAATAAACATT
448 TTTTTAGGATTAC-GTACTATAAACATA
** * *
385066 GTCTTCTCATTAGGATATGCGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTCCTAG
1 GTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTAGCAAGAAAGGCTTTTTCCCTCCTAG
* * * *
385131 TTCTTGTAAAGT-TGAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCAT
65 TTTTTGTAAAGTCT-AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTT
* * *
385195 TCATTTTATGGTTAGCCATTATAAGCACATTCTTCTAAG-TAGGATAAATGATATTGATGATTTT
129 TCATTTTATGATTAGGCACTATAAGCACATTCTTCT-AGTTAGGATAAATGATATTGATGATTTT
* * *
385259 CTTTTACATGGAATTCTTTTCTTTG-TCTATTTTCCTTAAAATCAAAGTTAATCCCCTAAATAAG
193 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAG
* * * * *
385323 ACAA-CTATCGATTCTCATAACAATCTCCACTCTTTTAGGATTGGGAACCTAAAAAAAATTTCCT
258 ACAAGC-ATCGATTCTCGTAACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACAAATTCCCT
* * * * *
385387 TTAGTAGGATACTTGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTTCATCGTTTTAT
322 TTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAT
* * * *
385452 AAAGAACCAAAGTTTGTCCCTTAAATAAGACAATCATTAATACTGATAATAATCCCCATTCTTTT
387 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTT
* *
385517 TAGGATTACGTATTGTAAACATA
452 TAGGATTACGTACTATAAACATA
* *
385540 GTCTT-TCTTTAGGATACACGATATTGATGCTTTGTTTCA-CAGGAAAGGCTTTTTCCC-CACTA
1 GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTT-AGCAAGAAAGGCTTTTTCCCTC-CTA
* * * * ** * *
385602 GTTTTTGTGAAGTCTTAGTTCATGCCTCAAACGAGACAAACATACATTCTTCTAATAATCTTCTT
64 GTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTT
* * * * * *
385667 TCATTTT-TTATTTGGCACTATAAGCACATTCTCCTCA-TT-GGCCTAAATCATATTGATGACTT
129 TCATTTTATGATTAGGCACTATAAGCACATTCTTCT-AGTTAGG-ATAAATGATATTGATGATTT
* *
385729 TCTTTTCCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAA
192 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAA
* * * * *
385794 GACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGTATTGGGAACGTAAAATAAATTTCC
257 GACAAGCATCGATTCTCGTAACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACAAATTCCC
* * * * * * *
385859 TTAATCAGGATAAATGACATTGATGCTTTGGTATCGGAAGAAAATCTTTTCTTTCCACCATTTTA
321 TTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTA
* * * * *
385924 TAAAGAATCAAAGTTTGTCCCTTAAATAAGACAATCATGTATAGTCATAACAATCCACATTCTTT
386 TAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTT
* * * * * *
385989 TCAAGATTAGGTACTGTAAATATT
451 TTAGGATTACGTACTATAAACATA
* * * * * *
386013 GTCTTCACATTAGAATACACGATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTTCCTTGCAAAT
1 GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTTCCCTCCTAGT
* * *
386078 TTTTGTAAAGTCTATGTTTGTGCCTTAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
66 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
* * * * *
386143 ATTTTATGACTAGGTACTATAAGCACATTCTTCTCGTTAGGATAAACGATATTAATGATTTT-TT
131 ATTTTATGATTAGGCACTATAAGCACATTCTTCTAGTTAGGATAAATGATATTGATGATTTTCTT
** * **
386207 TCGCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGACA
196 TTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
* * * * * * * * *
386272 AGCATCAATTCTCATAACAGTC-CTTATTATTTTCGAGATTGGGAAACTAAAGCACATTCCCTTC
261 AGCATCGATTCTCGTAACAGTCTC-CATTCTTTTAG-GATTGGGAACCTAAAACAAATTCCCTTT
*
386336 ATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT-TGA
324 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAT-A
* * *
386400 TAA-AATCAAAGTTTGTCTCTTAAAGAAGACAAGCATGAATACTCATAGTAATCCCCATTCTTTT
388 -AAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTT
* * *
386464 TCGGATT-CGGTGCCATAAACATA
452 TAGGATTAC-GTACTATAAACATA
* * * *
386487 GTCTTCTCGTTAGGATACGCGATATTAATGCTTTGGTTTCA-CAAGAAAGGCTTTTTCCCTCCCA
1 GTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTT-AGCAAGAAAGGCTTTTTCCCTCCTA
* * * *
386551 GTTCTTGTAAAGTCGAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
64 GTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTT
* * * *
386616 TCATTTTATGGTTAGCCATTATAAGCACATTCTTCTAAG-TAGGATAAATGTTATTGATGATTTT
129 TCATTTTATGATTAGGCACTATAAGCACATTCTTCT-AGTTAGGATAAATGATATTGATGATTTT
* * *
386680 CTTTTACATGGAATTTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCCTAAATAAG
193 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAG
* * *
386745 ACAA-CTATCGATTCTCGTAACAATCTCCACTCTTTTAGGATTGGGAACCTAAAACAAATTTCCT
258 ACAAGC-ATCGATTCTCGTAACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACAAATTCCCT
* * * *
386809 TTAGTAGGATACTTGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTAT
322 TTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAT
* * *
386874 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAGTCATGAATACTGATAATAATCCCCAATCTTTT
387 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTT
* * * *
386939 TATGATTAGGTATTGTAAACATA
452 TAGGATTACGTACTATAAACATA
* * * * *
386962 GTCTT-TCTTTAGGATACACGATATTGATGCTTTGTTTCG-AGGGAAAAGCTTTTTCCC-ACTAG
1 GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTAGCA-AGAAAGGCTTTTTCCCTCCTAG
* * * * * ** * *
387024 TTTTTGTGAAGTCTTAGTTCATACCTCAAACGAGACAAACATACATTCTTCTAATAATCTTCTTT
65 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTT
* * * * * *
387089 CATTTTTTGATTTGGCACTATAAGCACATTCTCCTCA-TT-GGCCTAAATCATATTGATGACTTT
130 CATTTTATGATTAGGCACTATAAGCACATTCTTCT-AGTTAGG-ATAAATGATATTGATGATTTT
* * *
387152 CTTTTCCATAGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAG
193 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAG
* * *
387217 ACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGTATTGGGAACGTAAAACAAATTCCCT
258 ACAAGCATCGATTCTCGTAACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACAAATTCCCT
* ** * * *
387282 TAATTAGGATACATGACATTGATGCTTTTTTGTCGGAAGAAAATCTTTTCTTTCCACCATTTTAT
322 TTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAT
* * *
387347 AACGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGTATACTCATAACAAT-CCCATTCTTTT
387 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTT
* * * *
387411 TAGGATTACGTATTGTAAATATT
452 TAGGATTACGTACTATAAACATA
* * * * * *
387434 GTCTTCGCATTAGGATACACGATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTACCTTACAAAT
1 GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTTCCCTCCTAGT
* * * *
387499 TTTTGTAAAGTCTATGTTAGTGCCTTAAATGAGACAAACTTGGATTCTTGTAATGATCTTCTTTC
66 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
* * * * * *
387564 ATTTTATGATTAGGTACTATAAGCACATTCTCCTTGTTAGGATAAACGATATTGATGTTTTTTTT
131 ATTTTATGATTAGGCACTATAAGCACATTCTTCTAGTTAGGATAAATGATATTGATG--ATTTTC
* * * *
387629 TTTTGCATGGAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGA
194 TTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGA
* * * * * * *
387694 CAAGCATCAATTCTCGTAATAGTC-CTTATTATTTTTTGGATTGGGAAACTAAAACACATTCCCT
259 CAAGCATCGATTCTCGTAACAGTCTC-CATT-CTTTTAGGATTGGGAACCTAAAACAAATTCCCT
* * * *
387758 TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCCTTCCACAGTTTTGA
322 TTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-A
* * * * * *** *
387823 T--AGAATCAAAGTTTGTCTTTTGAATAAGACAAACATGAATGCTCA-AGTAAAAACCATTCCTT
386 TAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTT
* * *
387885 TCAGGATTAGGTACCATAAACATA
451 TTAGGATTACGTACTATAAACATA
* * *
387909 GTCTTCTCATT-GAGATACATGATATTGATGCTTTGGTCTAGCAAGAAAAGAC-TTTTCCC-CAC
1 GTCTTCTCATTAG-GATACACGATATTGATGCTTT-GTTTAGCAAG-AAAGGCTTTTTCCCTC-C
* * * * * *
387971 TAGTTTTTGTAAAGTGTAAGTTCATGCCTCAAATGAGAAAAACATGGACTCTAGTAATGACCTTC
62 TAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTC
* * * * * *
388036 ATTT-A-TTTGTGATTAGGCACTATAAACACAATCTTTTCGTTACGATAAATGATATTGATGATT
127 -TTTCATTTTATGATTAGGCACTATAAGCACATTCTTCTAGTTAGGATAAATGATATTGATGATT
* * *
388099 TT-TTTTGA-GTGGAAATCTTTTCTCTGTCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAT
191 TTCTTTT-ACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAT
* * * * *
388162 AAGACAAGCATTGATTCTCGTAGCAGTCTCCATTCTTTTTAAGATTGGGAACCTAAAACACAGTC
255 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTC-TTTTAGGATTGGGAACCTAAAACAAATTC
* *
388227 CCTTTATTAGGATACATGACATTAATGCTTTGGGGGTCGCAAGAAAAGCTTTTCTTTCCACC-TT
319 CCTTTATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * * * * *
388291 GTTTTAAAGAATCAAAGTTTATCTCTTAAGTTAGACAAGCATGAATACTCATAGTAATCCCCATT
383 -TTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATT
* **
388356 CTTTTCAGGATTTGGTAGC-ATAAACATA
447 CTTTTTAGGATTACGTA-CTATAAACATA
* * * *
388384 GTCTTCTCATTAGGGTACATGATATCGATGCTTTGGTTTTGCAAGAAAGGCTTTT
1 GTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTAGCAAGAAAGGCTTTT
388439 CTTTCTGCCG
Statistics
Matches: 2829, Mismatches: 474, Indels: 143
0.82 0.14 0.04
Matches are distributed among these distances:
470 2 0.00
471 69 0.02
472 508 0.18
473 427 0.15
474 685 0.24
475 659 0.23
476 352 0.12
477 15 0.01
478 30 0.01
479 82 0.03
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (474 bp):
GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTAGCAAGAAAGGCTTTTTCCCTCCTAGT
TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCTTTC
ATTTTATGATTAGGCACTATAAGCACATTCTTCTAGTTAGGATAAATGATATTGATGATTTTCTT
TTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACA
AGCATCGATTCTCGTAACAGTCTCCATTCTTTTAGGATTGGGAACCTAAAACAAATTCCCTTTAT
TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAG
AATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTTAGG
ATTACGTACTATAAACATA
Found at i:388357 original size:160 final size:159
Alignment explanation
Indices: 388140--388525 Score: 406
Period size: 160 Copynumber: 2.4 Consensus size: 159
388130 TTTTCCTTAA
* * * * * * * *
388140 AATCAAAGTTAATCCCTTAAATAAGACAAGCATTG-ATTCTCGTAGCAGTCTCCATTCTTTTTAA
1 AATCAAAGTTTATCTCTTAAATAAGACAAGCA-TGAATACTCATAGAAATCCCCATTCTTTTCAA
*
388204 GATTGGGAACC-TAAAACACAGTCCCTT-T-ATTAGGATACATGACATTAATGCTTTGGGGGTCG
65 GATTGGGAACCAT-AAACACAGT--CTTCTCATTAGGATACATGACATCAATGCTTT-GGGGTCG
*
388266 CAAGAAAAGCTTTTCTTTCCACC-TTGTTTTAAAG
126 CAAGAAAAGCTTTTCTTTCCACCGTT-TTATAAAG
* * * *
388300 AATCAAAGTTTATCTCTTAAGTTAGACAAGCATGAATACTCATAGTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTATCTCTTAAATAAGACAAGCATGAATACTCATAGAAATCCCCATTCTTTTCAAG
* * * * * * * ** *
388365 ATTTGGTAGCATAAACATAGTCTTCTCATTAGGGTACATGATATCGATGCTTTGGTTTTGCAAGA
66 ATTGGGAACCATAAACACAGTCTTCTCATTAGGATACATGACATCAATGCTTTGGGGTCGCAAGA
* **
388430 AAGGCTTTTCTTTCTGCCGTTTTATAAAG
131 AAAGCTTTTCTTTCCACCGTTTTATAAAG
* * *
388459 AATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATACTCATAGAAAT-CCCATTCTTTTCAGG
1 AATCAAAGTTTATCTCTTAAATAAGACAAGCATGAATACTCATAGAAATCCCCATTCTTTTCAAG
388523 ATT
66 ATT
388526 ACATATTGTA
Statistics
Matches: 190, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
158 21 0.11
159 78 0.41
160 90 0.47
161 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34
Consensus pattern (159 bp):
AATCAAAGTTTATCTCTTAAATAAGACAAGCATGAATACTCATAGAAATCCCCATTCTTTTCAAG
ATTGGGAACCATAAACACAGTCTTCTCATTAGGATACATGACATCAATGCTTTGGGGTCGCAAGA
AAAGCTTTTCTTTCCACCGTTTTATAAAG
Found at i:388475 original size:159 final size:158
Alignment explanation
Indices: 388265--388575 Score: 426
Period size: 159 Copynumber: 2.0 Consensus size: 158
388255 TTTGGGGGTC
* * * *
388265 GCAAGAAAAGCTTTTCTTTCCACCTTGTTTTAAAGAATCAAAGTTTATCTCTTAAGTTAGACAAG
1 GCAAGAAAAGCTTTTCTTTCCACCTTGTTATAAAGAATCAAAGTTTATCTCTCAAATAAGACAAG
* ***
388330 CATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTTGGTAGCATAAACATAGTCTTCTCATT
66 CATGAATACTCATAGAAAT-CCCATTCTTTTCAGGATTACATAGCATAAACATAGTCTTCTCATT
* *
388395 AGGGTACATGATATCGATGCTTTGGTTTT
130 AGGATACACGATATCGATGCTTTGGTTTT
* ** *
388424 GCAAGAAAGGCTTTTCTTTCTGCCGTT-TTATAAAGAATCAAAGTTTGTCTCTCAAATAAGACAA
1 GCAAGAAAAGCTTTTCTTTCCACC-TTGTTATAAAGAATCAAAGTTTATCTCTCAAATAAGACAA
*** *
388488 GCATGAATACTCATAGAAATCCCATTCTTTTCAGGATTACATATTGTAAATATAGTCTTCTCATT
65 GCATGAATACTCATAGAAATCCCATTCTTTTCAGGATTACATAGCATAAACATAGTCTTCTCATT
*
388553 AGGATACACGATATTGATGCTTT
130 AGGATACACGATATCGATGCTTT
388576 CTTTCACAAG
Statistics
Matches: 132, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 58 0.44
159 72 0.55
160 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (158 bp):
GCAAGAAAAGCTTTTCTTTCCACCTTGTTATAAAGAATCAAAGTTTATCTCTCAAATAAGACAAG
CATGAATACTCATAGAAATCCCATTCTTTTCAGGATTACATAGCATAAACATAGTCTTCTCATTA
GGATACACGATATCGATGCTTTGGTTTT
Found at i:388616 original size:158 final size:159
Alignment explanation
Indices: 388295--388609 Score: 393
Period size: 158 Copynumber: 2.0 Consensus size: 159
388285 CACCTTGTTT
* * * *
388295 TAAAGAATCAAAGTTTATCTCTTAAGTTAGACAAGCATGAATACTCATAGTAATCCCCATTCTTT
1 TAAAGAATCAAAGTTTATCTCTCAAATAAGACAAGCATGAATACTCATAGAAATCCCCATTCTTT
*** * * * **
388360 TCAGGATTTGGTAGCATAAACATAGTCTTCTCATTAGGGTACATGATATCGATGCTTTGGTTTTG
66 TCAGGATTACATAGCATAAACATAGTCTTCTCATTAGGATACACGATATCGATGCTTTGCTTTCA
** * *
388425 CAAGAAAGGCTTTTCTTTCTGCCGTTTTA
131 CAAGAAAGGCTTTTCTCCCTACAGTTTTA
*
388454 TAAAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATACTCATAGAAAT-CCCATTCTTT
1 TAAAGAATCAAAGTTTATCTCTCAAATAAGACAAGCATGAATACTCATAGAAATCCCCATTCTTT
*** * *
388518 TCAGGATTACATATTGTAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-CTTTCA
66 TCAGGATTACATAGCATAAACATAGTCTTCTCATTAGGATACACGATATCGATGCTTTGCTTTCA
*
388582 CAAGGAAGGCTTTT-TCCCTACTAGTTTT
131 CAAGAAAGGCTTTTCTCCCTAC-AGTTTT
388610 TGTAAAGCCT
Statistics
Matches: 132, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
156 4 0.03
157 21 0.16
158 58 0.44
159 49 0.37
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (159 bp):
TAAAGAATCAAAGTTTATCTCTCAAATAAGACAAGCATGAATACTCATAGAAATCCCCATTCTTT
TCAGGATTACATAGCATAAACATAGTCTTCTCATTAGGATACACGATATCGATGCTTTGCTTTCA
CAAGAAAGGCTTTTCTCCCTACAGTTTTA
Found at i:388720 original size:632 final size:632
Alignment explanation
Indices: 387758--389069 Score: 1585
Period size: 632 Copynumber: 2.1 Consensus size: 632
387748 CACATTCCCT
* * * *
387758 TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCCTTCCACAGTTTTGA
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCCTTCCACAGTTTTGA
* ** *
387823 TAGAATCAAAGTTTGTCTTTTGAATAAGACAAACATGAATGCTCAAGTAAAAACCATTCCTTTCA
66 TAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATACTCAAGTAAAAACCATTCCTTTCA
** *
387888 GGATTAGGTACCATAAACATAGTCTTCTCATTGAGATACATGATATTGATGCTTTGGTCTAGCAA
131 GGATTACATACCATAAACATAGTCTTCTCATTGAGATACACGATATTGATGCTTTGGTCTAGCAA
** *
387953 GAAAAGACTTTTCCCCACTAGTTTTTGTAAAGTGTAAGTTCATGCCTCAAATGAGAAAAACATGG
196 GAAAAGACTTTTCCCCACTAGTTTTTGTAAAGCCTAAATTCATGCCTCAAATGAGAAAAACATGG
* * *
388018 ACTCTAGTAATGACCTTCATTTATTTGTGATTAGGCACTATAAACACAATCTTTTCGTTACGATA
261 ACTCTAGCAATGACCTTCATTTATTTATGATTAGGCACTATAAACACAATCTTTCCGTTACGATA
* * *
388083 AATGATATTGATGATTTT-TTTTG-AGTGGAAATCTTTTCTCTGTCCTATTTTCCTTAAAATCAA
326 AATGATATTGATGATTTTCTTTTGCA-TGGAAATATTTTCTCTGCCCAATTTTCCTTAAAATCAA
* * ** *
388146 AGTTAATCCCTTAAATAAGACAAGCATTGATTCTCGTAGCAGTCTCCATTCTTTTTAAGATTGGG
390 AGTTAATCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTGGG
* * *
388211 AACCTAAAACACAGTCCCTTTATTAGGATACATGACATTAATGCTTTGGGGGTCGCAAGAAAAGC
455 AACCTAAAACACAGTCCCTTCAATAGGATACATGACATTAATGCTTT-GGGGTCACAAGAAAAGC
* * *
388276 TTTTCTTTCCACC-TTGTTTTAAAGAATCAAAGTTTATCTCTTAAGTTAGACAAGCATGAATACT
519 TTTTCTTTCCACCATT-TTATAAAGAATCAAAGTTTATCTCTTAAATAAGACAAGCATGAATACT
* * *
388340 CATAGTAATCCCCATTCTTTTCAGGATTTGGTAGCATAAACATAGTCTTC
583 CATAATAATCCCCATTCTTTTCAAGATTAGGTAGCATAAACATAGTCTTC
* * * * ** *
388390 TCATTAGGGTACATGATATCGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTTTCTGCCGTTTT-A
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCCTTCCACAGTTTTGA
* ** *
388454 TAAAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATACTCATAG-AAATCCCATTCTTT
66 T--AGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATACTCA-AGTAAAAACCATTCCTT
*** * * *
388518 TCAGGATTACATATTGTAAATATAGTCTTCTCATT-AGGATACACGATATTGATGCTTT-CTTTC
128 TCAGGATTACATACCATAAACATAGTCTTCTCATTGA-GATACACGATATTGATGCTTTGGTCT-
* * * * *
388581 A-CAAG-GAAGGCTTTTTCCCTACTAGTTTTTGTAAAGCCTAAATTCGTGTCC-CAAATGAG-CA
191 AGCAAGAAAAGAC-TTTTCCCCACTAGTTTTTGTAAAGCCTAAATTCATG-CCTCAAATGAGAAA
* * * * *
388642 AACATGGATTCTAGCAATGATCTTC-TTTCATTTTATGATTAGGTA-TAATAACCAC-GT-TTTC
254 AACATGGACTCTAGCAATGACCTTCATTT-A-TTTATGATTAGGCACT-ATAAACACAATCTTTC
* * * *
388703 CGCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATTATTTTTTTTGCCCAATTTTC
316 CG--TTACGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTCTGCCCAATTTTC
** *
388768 CTTAAAATCAAAGTTAATCTTTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCTATTCTTT
379 CTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTT
* * * * *
388833 TCAGGATTGGGAACCTAAAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTGTCA
444 TCAAGATTGGGAACCTAAAACACAGTCCCTTCAATAGGATACATGACATTAATGCTTTGGGGTCA
* * *
388898 CAAGGAAAGGTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTATCTCTTAAATAAGACAATC
509 CAAGAAAAGCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTATCTCTTAAATAAGACAAGC
* * * ** *
388963 ATGAATATTGATAATAATCCCTATTCTTTTCAAGATTAGGTATTATAAACATAGTTTTC
574 ATGAATACTCATAATAATCCCCATTCTTTTCAAGATTAGGTAGCATAAACATAGTCTTC
* * ** * *
389022 TCATTCGGTTACACAATATTGATGCGTT-GTTTCGTAAGAAAGGCTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
389070 TCCCTACCAA
Statistics
Matches: 575, Mismatches: 90, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
630 8 0.01
631 50 0.09
632 275 0.48
633 239 0.42
634 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (632 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCCTTCCACAGTTTTGA
TAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATACTCAAGTAAAAACCATTCCTTTCA
GGATTACATACCATAAACATAGTCTTCTCATTGAGATACACGATATTGATGCTTTGGTCTAGCAA
GAAAAGACTTTTCCCCACTAGTTTTTGTAAAGCCTAAATTCATGCCTCAAATGAGAAAAACATGG
ACTCTAGCAATGACCTTCATTTATTTATGATTAGGCACTATAAACACAATCTTTCCGTTACGATA
AATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTCTGCCCAATTTTCCTTAAAATCAAA
GTTAATCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTGGGA
ACCTAAAACACAGTCCCTTCAATAGGATACATGACATTAATGCTTTGGGGTCACAAGAAAAGCTT
TTCTTTCCACCATTTTATAAAGAATCAAAGTTTATCTCTTAAATAAGACAAGCATGAATACTCAT
AATAATCCCCATTCTTTTCAAGATTAGGTAGCATAAACATAGTCTTC
Found at i:390143 original size:159 final size:156
Alignment explanation
Indices: 389766--390170 Score: 431
Period size: 157 Copynumber: 2.6 Consensus size: 156
389756 CGTAACAGTC
* * * * * *
389766 TCCATTCTTTTTAGGATTAGGAACC-TAAAACACATTCCCTT-T-ATTAGGATACATGACATTGA
1 TCCATTCTTTTCAGGATTAGGTACCAT-AAACATAGT--CTTCTCATTAGGATACAAGATATTGA
* ** * * * * * * *
389828 TGTTTTGGGGTCGCAGGAAAAGCTTATTTTTCCATCGTTTTTTAAAGAATCAAAATTTGTCTCTT
63 TGCTTTGGTTTCGCAAGAAAGGCTT-TTTTTCCACCATTTTATAAAGAAACAAAATTTGTCTCTC
*** * * *
389893 AAGTTAGACTAACATGAATAGTCATAGTAA
127 AAAAAAGACAAACAAGAATACTCATAGTAA
* *
389923 TGCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGGTACAAGATATTGATGC
1 TCCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACAAGATATTGATGC
*
389988 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTATAAAGAAACAAAGTTTGTCTCTCAAA
66 TTTGGTTTCGCAAGAAAGGCTTTT-TTTCCACCATTTTATAAAGAAACAAAATTTGTCTCTCAAA
390053 AAAGACAAACAAGAATACTCATAGTAA
130 AAAGACAAACAAGAATACTCATAGTAA
* *** *
390080 TCCCCATTCTTTTCATGATTAGGTATTGTAAACATAGTCTTCTCATTAGGATACACGATATTGAT
1 T--CCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACAAGATATTGAT
* *
390145 GCTTT-GTTACGTAAGAAAGGCTTTTT
64 GCTTTGGTTTCGCAAGAAAGGCTTTTT
390171 CCTTGCCAAA
Statistics
Matches: 208, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 123 0.59
158 19 0.09
159 60 0.29
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (156 bp):
TCCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACAAGATATTGATGC
TTTGGTTTCGCAAGAAAGGCTTTTTTTCCACCATTTTATAAAGAAACAAAATTTGTCTCTCAAAA
AAGACAAACAAGAATACTCATAGTAA
Found at i:390184 original size:159 final size:157
Alignment explanation
Indices: 389865--390190 Score: 404
Period size: 159 Copynumber: 2.1 Consensus size: 157
389855 TTTTCCATCG
* * * *** * * * *
389865 TTTTTTAAAGAATCAAAATTTGTCTCTTAAGTTAGACTAACATGAATAGTCATAGTAATGCATTC
1 TTTTATAAAGAAACAAAATTTGTCTCTCAAAAAAGACAAACAAGAATACTCATAGTAATCCATTC
*
389930 TTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGGTACAAGATATTGATGCTTTGGTT
66 TTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACAAGATATTGATGCTTTGGTT
* * *
389995 TCGCAAGAAAGGCTTTTCTTTCCACCA
131 ACGCAAGAAAGGCTTTTCTTGCCACAA
*
390022 TTTTATAAAGAAACAAAGTTTGTCTCTCAAAAAAGACAAACAAGAATACTCATAGTAATCCCCAT
1 TTTTATAAAGAAACAAAATTTGTCTCTCAAAAAAGACAAACAAGAATACTCATAGTAAT--CCAT
* *** *
390087 TCTTTTCATGATTAGGTATTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-G
64 TCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACAAGATATTGATGCTTTGG
*
390151 TTACGTAAGAAAGGCTTTTTCCTTGCCA-AA
129 TTACGCAAGAAAGGC-TTTT-CTTGCCACAA
*
390181 TTTTGTAAAG
1 TTTTATAAAG
390191 CCAAAATTCG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
157 49 0.34
158 14 0.10
159 74 0.52
160 6 0.04
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (157 bp):
TTTTATAAAGAAACAAAATTTGTCTCTCAAAAAAGACAAACAAGAATACTCATAGTAATCCATTC
TTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACAAGATATTGATGCTTTGGTT
ACGCAAGAAAGGCTTTTCTTGCCACAA
Found at i:390522 original size:630 final size:634
Alignment explanation
Indices: 389348--390576 Score: 1608
Period size: 630 Copynumber: 1.9 Consensus size: 634
389338 GATTCATGAC
* * * *
389348 ATTGATGCTTTGGTGTCATAAGAAAAGCTTTTTTTTCCACCGTTTGTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTGTGATAGAAACAAAGTTTGT
* * * * * *
389413 CTGTTAAATAACACAAATATGAATACTCATAGTAATCCCCGTTCTTTTCAGGATTAGGTACCATA
66 CTCTCAAAAAACACAAACAAGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCATA
* * * *
389478 AACATAGTCTTCTCATTACGACATATGATATTGGTGCATTGGTTTCGCAAGAAAGGCTTTTTCCC
131 AACATAGTCTTCTCATTACGACACACGATATTGATGCATTGGTTACGCAAGAAAGGCTTTTTCCC
* * * * *
389543 GACTAATTTTTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAATATGGAATCTAGGAATGATC
196 GACCAAATTTTGTAAAGTCCAAATTCGTGCCTCAAATGAGACAAACATGGAATCTAGGAATGATA
* * * * * *
389608 TTTATTCATTTTGTGATTATGTACTATAAACACATTCTTCTCTATAGGATAAATGATATTGATGA
261 TTCATTCATATTATGATTAGGCACTATAAACACATTCTCCTCTATAGGATAAATGATATTGATGA
* *
389673 TTTTCTTTTGCGTGGAAATCTTTTTTTGCCCTATTTCTCTTAAAATCAAAGTTAATCCCATAAAT
326 TTTTCTTTTGCATGGAAATCTTTTCTTGCCCTATTTCTCTTAAAATCAAAGTTAATCCCATAAAT
* *
389738 AAGACAACTATCGATTCTCGTAACAGTCTCCATTCTTTTTAGGATTAGGAACCTAAAACACATTC
391 AAGACAACTATCGATTCTCGCAACAGTCTCCATTCTTTTTAGGATTAGGAACCTAAAACAAATTC
* * * * * *
389803 CCTTTATTAGGATACATGACATTGATGTTTTGGGGTCGCAGGAAAAGCTTATTTTTCCATCGTTT
456 CCTTCATTAGGATACATCACATTGATGCTTTGGGGTAGCAAGAAAAGCTTATTTTTCCACCGTTT
* * * *
389868 TTTAAAGAATCAAAATTTGTCTCTTAAGTTAGACTAA-CATGAATAGTCAT-AGTAAT-G-CATT
521 TATAAAGAATCAAAATTTGTCTCTTAAATAAGAC-AATCATGAATACTCATAAG-AATCGCCATT
389929 CTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGGTACAAGAT
584 CTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGGTACAAGAT
* * *
389980 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTT-T-ATAAAGAAACAAAGTTT
1 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTGTGAT--AGAAACAAAGTTT
* * ***
390043 GTCTCTCAAAAAAGACAAACAAGAATACTCATAGTAATCCCCATTCTTTTCATGATTAGGTATTG
64 GTCTCTCAAAAAACACAAACAAGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCA
* * * *
390108 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGC-TTTGTTACGTAAGAAAGGCTTTTTC
129 TAAACATAGTCTTCTCATTACGACACACGATATTGATGCATTGGTTACGCAAGAAAGGCTTTTTC
* * * * *
390172 CTTG-CCAAATTTTGTAAAG-CCAAAATTCGTGCCTCAAATGA-ATAAACATTGAGTCTAGTAAT
194 C-CGACCAAATTTTGTAAAGTCC-AAATTCGTGCCTCAAATGAGACAAACATGGAATCTAGGAAT
* * * *
390234 GATATTCCTTCATATTATGATTAGGCATTATAAGCACATTCTCCT-TGTTAGGATAAATGATATT
257 GATATTCATTCATATTATGATTAGGCACTATAAACACATTCTCCTCT-ATAGGATAAATGATATT
* *
390298 GATGATTTTCTTTTGCAT-GAAATTCTTTTCCTTGCCCTATTTTTCTTAAAATCACAGTTAATCC
321 GATGATTTTCTTTTGCATGGAAA-TCTTTT-CTTGCCCTATTTCTCTTAAAATCAAAGTTAATCC
* *
390362 C-TAAAATAAGACAAGC-ATCGATTCTCGCAATAGTCTCCATT-TTTTTAGGATTTGGAACCTAA
384 CAT-AAATAAGACAA-CTATCGATTCTCGCAACAGTCTCCATTCTTTTTAGGATTAGGAACCTAA
* * * *
390424 AACAAATTTCCTTCGTTAGGATACATCACATTGATGCTTTGGTGTAGGAAGAAAAGCTT-TTCTT
447 AACAAATTCCCTTCATTAGGATACATCACATTGATGCTTTGGGGTAGCAAGAAAAGCTTATT-TT
*
390488 TCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAAGAA
511 TCCACCGTTTTATAAAGAATCAAAATTTGTCTCTTAAATAAGACAATCATGAATACTCATAAGAA
*
390553 TCGCCATTCTTTTCTGGATTAGGT
576 TCGCCATTCTTTTCAGGATTAGGT
390577 GTTCTCATTA
Statistics
Matches: 513, Mismatches: 70, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
629 9 0.02
630 220 0.43
631 124 0.24
632 160 0.31
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (634 bp):
ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTGTGATAGAAACAAAGTTTGT
CTCTCAAAAAACACAAACAAGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCATA
AACATAGTCTTCTCATTACGACACACGATATTGATGCATTGGTTACGCAAGAAAGGCTTTTTCCC
GACCAAATTTTGTAAAGTCCAAATTCGTGCCTCAAATGAGACAAACATGGAATCTAGGAATGATA
TTCATTCATATTATGATTAGGCACTATAAACACATTCTCCTCTATAGGATAAATGATATTGATGA
TTTTCTTTTGCATGGAAATCTTTTCTTGCCCTATTTCTCTTAAAATCAAAGTTAATCCCATAAAT
AAGACAACTATCGATTCTCGCAACAGTCTCCATTCTTTTTAGGATTAGGAACCTAAAACAAATTC
CCTTCATTAGGATACATCACATTGATGCTTTGGGGTAGCAAGAAAAGCTTATTTTTCCACCGTTT
TATAAAGAATCAAAATTTGTCTCTTAAATAAGACAATCATGAATACTCATAAGAATCGCCATTCT
TTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGGTACAAGAT
Found at i:390885 original size:459 final size:460
Alignment explanation
Indices: 389963--391509 Score: 1657
Period size: 459 Copynumber: 3.3 Consensus size: 460
389953 CATAGTCTTC
* * * * *
389963 TCATTAGGGTACAAGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTAT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTAT
* * * *
390028 AAAGAAACAAAGTTTGTCTCTCAAAAAAGACAAACAAGAATACTCATAGTAATCCCCATTCTTTT
66 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTT
* *
390093 CAT-GATTAGGTATTGTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTACGT
131 C-TGGATTA-G-A--G------T-G--TTCTCATTAGGATACACGATATTGATGCTTTGTTTCGC
* * * * * *
390157 AAGAAAGGCTTTTTCCTTGCCAAATTTTGTAAAGCCAAAATTCGTGCCTCAAATGA-ATAAACAT
182 AAGAAAGGCTTTTTCCTTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * *
390221 TGAGTCTAGTAATGATATTCCTTCATATTATGATTAGGCATTATAAGCACATTCTCCT-TGTTAG
247 GGATTCTAGTAATGATATTCATTCATTTTATGATTAGGCATTATAAGCACATTCTCCTAT-TTAG
* * *
390285 GATAAATGATATTGATGATTTTCTTTTGCATGAAATTCTTTTCCTTGCCCTATTTTTCTTAAAAT
311 GATAAATGATATTGATGATTTTCTTTTGCATGAAATTTTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
390350 CACAGTTAATCCC-TAAAATAAGACAAGCATCGATTCTCGCAATAGTCTCCATTTTTTTAGGATT
376 CA-AGTTAATCCCTTAAAA-AAGACAAGCATCGATTCTCGTAACAGTCTCCATTTTTTTAGGATT
* * *
390414 TGGAACCTAAAACAAATTTCCT
439 GGGAACCTAAAACACATTCCCT
* * * * *
390436 TCGTTAGGATACATCACATTGATGCTTTGGTGTAGGAAGAAAAGCTTTTCTTTCCACCGTTTTAT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTAT
* *
390501 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCATAAG-AATCGCCATTCTTT
66 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-AGTAATCCCCATTCTTT
*
390565 TCTGGATTAG-GTGTTCTCATTAGGATACACGATATTGATACTTTGTTTCGCAAGAAAGGCTTTT
130 TCTGGATTAGAGTGTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTT
* * *
390629 T-CTTACCAATTTTTGTAAAGTCTAAGTTCGGGCCTCAAATAAGACAAACATGGATTCCT-GGAA
195 TCCTTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT-CTAGTAA
* * * * *
390692 TGATCTTCTTTCTTTTTATGGTTAGGCACTATAAGCACATTCTCCTAATTTA-GATAAATGATAT
259 TGATATTCATTCATTTTATGATTAGGCATTATAAGCACATTCTCCT-ATTTAGGATAAATGATAT
* * * * **
390756 TGATGATTTTCTTTTGCATGGAATTTTTTTCTTTGTCCTATTTCCCTTAAAATCAAGGTCCTCCC
323 TGATGATTTTCTTTTGCATGAAATTTTTTTCTTTGCCCTATTTTCCTTAAAATCAAGTTAATCCC
* * * * * * *
390821 TTAAAAAAGATATGCATCGGTTCTCGTAACAGTCCCCATTATTTTCAGGATAGGGAAACTAAAAC
388 TTAAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTTAGGATTGGGAACCTAAAAC
390886 ACATTCCCT
452 ACATTCCCT
* * **
390895 TCATTAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAAACTTTTCTTTCCACTGTTTT-T
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTAT
* * *
390959 GATAA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTAAGAGTAATCCCCATTCTT
66 -A-AAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTT
* * * *
391023 TT-TCGGATTCGGTGCCATAGACATAGTCTTCTCATTAGTATACACGATATTAATGCTCTGGTTT
129 TTCT-GGA-----T----TAG----AGTGTTCTCATTAGGATACACGATATTGATGCT-TTGTTT
* * * *
391087 CGCAAGAAAGGCTTTTTCCCTACCAGTTCTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAA
179 CGCAAGAAAGGCTTTTTCCTTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * * *
391152 CATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTACGCATTATAAACACATTCTTCT-TAT
244 CATGGATTCTAGTAATGATATTCATTCATTTTATGATTAGGCATTATAAGCACATTCTCCTAT-T
* * * * * *
391216 TAGGATAAATGATATTAATGATTTTCTTTAGCCTGAAAATCTTTTT-TTTGCCCTCTTTTCCATA
308 TAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATTTTTTTCTTTGCCCTATTTTCCTTA
* * * *
391280 AAATCAAAGTTAATCCCTGAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTTAG
372 AAATC-AAGTTAATCCCTTAAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTTAG
* *
391345 GATTGAGAACCAAAAACACATTCCCTT
435 GATTGGGAACCTAAAACACATTCCC-T
* * * * *
391372 TTATTAGGATACATGACATTAATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTAT
* ** * * * * * *
391437 AAAGATTTGAAGTTTGTCCCTTAAGTTAGACAAACTTGAATCCTCATAGTTATCCCCATT-TTTT
66 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTT
*
391501 CAGGATTAG
131 CTGGATTAG
391510 GTAGCATAAA
Statistics
Matches: 903, Mismatches: 134, Indels: 80
0.81 0.12 0.07
Matches are distributed among these distances:
458 73 0.08
459 309 0.34
460 7 0.01
461 2 0.00
462 1 0.00
464 1 0.00
467 3 0.00
468 4 0.00
471 1 0.00
472 2 0.00
473 146 0.16
474 29 0.03
475 137 0.15
476 84 0.09
477 103 0.11
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (460 bp):
TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTAT
AAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTT
CTGGATTAGAGTGTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTT
CCTTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ATATTCATTCATTTTATGATTAGGCATTATAAGCACATTCTCCTATTTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGAAATTTTTTTCTTTGCCCTATTTTCCTTAAAATCAAGTTAATCCCTTA
AAAAAGACAAGCATCGATTCTCGTAACAGTCTCCATTTTTTTAGGATTGGGAACCTAAAACACAT
TCCCT
Found at i:392136 original size:633 final size:635
Alignment explanation
Indices: 390895--392210 Score: 1818
Period size: 633 Copynumber: 2.1 Consensus size: 635
390885 CACATTCCCT
* * ** *
390895 TCATTAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAAACTTTTCTTTCCACTGTTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTTCTTTCCACTATTTTTG
* *
390960 ATAAAATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTAAGAGTAATCCCCATTCTTTT
66 AAAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTAAGAGTAATCCCCATTCTTTT
* * * * *
391025 TCGGATTCGGTGCCATAGACATAGTCTTCTCATTAGTATACACGATATTAATGCTCTGGTTTCGC
131 TCGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTCTGGTTTCAC
* *
391090 AAGAAAGGCTTTTTCCCTACCAGTTCTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACAT
196 AAGAAAGGCTTTTTCCCTACCAATTCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * *
391155 GGATTCTAGTAATGATTTTCATTCATTTTGTGATTACGCATTATAAACACATTCTTCTTATTAGG
261 GGATTCTAGTAATGATCTTCATTCATATTATGATTACGCATCATAAACACATTCTCCTTATTAGG
* * * *
391220 ATAAATGATATTAATGATTTTCTTTAGCCTGAAAATCTTTTTTTTGCCCTCTTTTCCATAAAATC
326 ATAAATGATATTAATGATTTTCTTTAGCATGAAAATATTTTCTTTGCCCTATTTTCCATAAAATC
* * *
391285 AAAGTTAATCCCTGAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGATTG
391 AAAGTTAATCCCTGAAATAAAACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGACTG
*
391350 AGAACCAAAAACACATTCCCTTTTATTAGGATACATGACATTAATGCTTTGGGGTCGCAAGAAAA
456 AGAACCAAAAACACATTCCCTTTTATTAGGATACATGACATTAATGCTTTGGGGTCACAAGAAAA
* * * ** * * *
391415 GCTTTTCTTTCCACTATTTTTTAAAGATTTGAAGTTTGTCCCTTAAGTTAGACAAACTTGAATCC
521 GCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATAC
* *
391480 TCATAGTTATCCCCATTTTTTCAGGATTAGGTAGCATAAACATAGTCTTC
586 TCATAATCATCCCCATTTTTTCAGGATTAGGTAGCATAAACATAGTCTTC
* * * *
391530 TCATTAGGGTGCATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTTCTTTCCACTATTTTAT
1 TCATTAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTTCTTTCCACTATTTT-T
* * * * *
391595 -AAAAAATCAAAGTTTGTCTCTTAAATAGGACAAATATGAATACTCATAGTAATCCCTATTC-TT
65 GAAAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTAAGAGTAATCCCCATTCTTT
*** * * * *
391658 TTCAGGATTAGGTATTGTAAACTTAGTCTTCTCATTAGGATACATGATATTGATGCT-TTGTTTC
130 TTC-GGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTCTGGTTTC
* * *
391722 ACAAGGATGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
194 ACAAGAAAGGCTTTTTCCCTACCAATTCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * *
391787 ATGTATTCTAGTAATGATCTTCTTTCATATTATGATTAGGCATCAT-AAGACATTCTCCTCT-TT
259 ATGGATTCTAGTAATGATCTTCATTCATATTATGATTACGCATCATAAACACATTCTCCT-TATT
* * * *
391850 AGGATAAATGATATTAATGATTTTCTTTTGCATGGAATTATTTTCTTTGCCCTATTTTCCTTAAA
323 AGGATAAATGATATTAATGATTTTCTTTAGCATGAAAATATTTTCTTTGCCCTATTTTCCATAAA
* * * *
391915 ATCAAAGTTAATCCCTTAAATAAAACAAGCATCGATTCTCGTAACAGTTTCCATTCTTTTCAGGA
388 ATCAAAGTTAATCCCTGAAATAAAACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGA
* * * *
391980 CTGGGAACCTAAAACACATTCCC-TTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGA
453 CTGAGAACCAAAAACACATTCCCTTTTATTAGGATACATGACATTAATGCTTTGGGGTCACAAGA
** *
392044 AAAGCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGTCTTTTAAATTAGACAATCATGAA
518 AAAGCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAA
* ***
392109 TACTCGTAATCATCCCCATTCTTTTCAGGATTAGGTATTGTAAACATAGTCTTC
583 TACTCATAATCATCCCCATT-TTTTCAGGATTAGGTAGCATAAACATAGTCTTC
* *
392163 TCATTAGGATACATAATATTGATGCTTTGCTTT-GCAAGAAAGGCTTTT
1 TCATTAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTT
392211 TCCCTATCAA
Statistics
Matches: 593, Mismatches: 84, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
632 123 0.21
633 208 0.35
634 110 0.19
635 151 0.25
636 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (635 bp):
TCATTAGGATACATGATATTGATGCTTTGATTTCGCAAGAAAGGCTTTTCTTTCCACTATTTTTG
AAAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTAAGAGTAATCCCCATTCTTTT
TCGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTCTGGTTTCAC
AAGAAAGGCTTTTTCCCTACCAATTCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGATCTTCATTCATATTATGATTACGCATCATAAACACATTCTCCTTATTAGG
ATAAATGATATTAATGATTTTCTTTAGCATGAAAATATTTTCTTTGCCCTATTTTCCATAAAATC
AAAGTTAATCCCTGAAATAAAACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGACTG
AGAACCAAAAACACATTCCCTTTTATTAGGATACATGACATTAATGCTTTGGGGTCACAAGAAAA
GCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATAC
TCATAATCATCCCCATTTTTTCAGGATTAGGTAGCATAAACATAGTCTTC
Found at i:392154 original size:159 final size:159
Alignment explanation
Indices: 390895--392210 Score: 689
Period size: 159 Copynumber: 8.3 Consensus size: 159
390885 CACATTCCCT
* * * * *
390895 TCATTAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAAACTTTTCTTTCCACTGTTTT-T
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTAT
* * * * * *
390959 GATAA-AATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTAAG-AGTAATCCCCATTCT
66 -A-AAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACT-CGTAATCATCCCCATTC-
* *** * *
391022 TTTTC-GGATTCGGTGCCATAGACATAGTCTTC
127 TTTTCAGGATTAGGTATTATAAACACAGTCTTC
* * * * * * *
391054 TCATTAGTATACACGATATTAATGCTCTGGTTTCGCAAGAAAGGC-TTT-TTCCCTACCAGTTCT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-ACTA-TT-T
* * * * * * * * * ***
391117 TGTAAAG--TCTAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCA
63 TATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACTCGTAATCATCCCCATTC-
* * *
391180 TTTT--GTGATTACGCATTATAAACACATTCTTC
127 TTTTCAG-GATTAGGTATTATAAACACAGTCTTC
* * * * ** * ** * * *
391212 TTATTAGGATAAATGATATTAATGATTTTCTTTAGCCTGAAAATCTTTTTTTTGCC-CTCTTTTC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTT-
** * * * * * * *
391276 CAT-AA-AATCAAAGTTAATCCCTGAAATAAGACAAGCATCAATTCTCATAA-CAGTCTCCATTC
64 -ATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACTCGTAATCA-TCCCCATTC
* * ** * *
391338 TTTTTAGGATT-GAGAACCAAAAACACATTCCCTT-
127 TTTTCAGGATTAG-GTATTATAAACACAGT--CTTC
* * * ** *
391372 TTATTAGGATACATGACATTAATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTAT
* ** * * * * * *
391437 AAAGATTTGAAGTTTGTCCCTTAAGTTAGACAAACTTGAATCCTCATAGTTATCCCCATT-TTTT
66 AAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACTCGTAATCATCCCCATTCTTTT
** *
391501 CAGGATTAGGTAGCATAAACATAGTCTTC
131 CAGGATTAGGTATTATAAACACAGTCTTC
* * * *
391530 TCATTAGGGTGCATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTTCTTTCCACTATTTTAT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTAT
* * * * * * *
391595 AAAAAATCAAAGTTTGTCTCTTAAA-TAGGACAAATATGAATACTCATAGTAATCCCTATTCTTT
66 AAAGAATCAAAGTTTGTCCCTTAAATTA-GACAAACATGAATACTCGTAATCATCCCCATTCTTT
* **
391659 TCAGGATTAGGTATTGTAAACTTAGTCTTC
130 TCAGGATTAGGTATTATAAACACAGTCTTC
* * ** * * *
391689 TCATTAGGATACATGATATTGATGCTTT-GTTTCACAAGGATGGCTTTTTCCCTACCAAT-TTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTTT-CTTTCCACTATTTT
* * * * * * * * * * ** *
391752 GTAAAG--TCTAAGTTCGTGCCTCAAATGAGACAAACATGTATTCTAGTAATGATCTTCTTTCAT
64 ATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACTCGTAATCATCCCCATTC-T
* * * * * * *
391815 ATT-ATGATTAGGCATCAT-AAGACATTCTCC
128 TTTCAGGATTAGGTATTATAAACACAGTCTTC
* * * * ** * * * ***
391845 TCTTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAATTATTTTCTTTGCC-CTATTTTC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTT-
* * ** * * * * **
391909 CTTAA-AATCAAAGTTAATCCCTTAAATAAAACAAGCATCG-ATTCTCGTAA-CAGTTTCCATTC
64 ATAAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACAT-GAATACTCGTAATCA-TCCCCATTC
* * * * *
391971 TTTTCAGGACTGGGAACCTA-AAACACATTCCCTT-
127 TTTTCAGGATTAGGTA-TTATAAACACAGT--CTTC
* * * *
392005 T-ATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTAT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTAT
** *
392069 AAAGAATCAAAGTTTGTCTTTTAAATTAGACAATCATGAATACTCGTAATCATCCCCATTCTTTT
66 AAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACTCGTAATCATCCCCATTCTTTT
* *
392134 CAGGATTAGGTATTGTAAACATAGTCTTC
131 CAGGATTAGGTATTATAAACACAGTCTTC
* * *
392163 TCATTAGGATACATAATATTGATGCTTTGCTTT-GCAAGAAAGGCTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT
392211 TCCCTATCAA
Statistics
Matches: 856, Mismatches: 249, Indels: 105
0.71 0.21 0.09
Matches are distributed among these distances:
155 3 0.00
156 41 0.05
157 79 0.09
158 290 0.34
159 332 0.39
160 102 0.12
161 9 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (159 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTAT
AAAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATACTCGTAATCATCCCCATTCTTTT
CAGGATTAGGTATTATAAACACAGTCTTC
Found at i:392339 original size:157 final size:157
Alignment explanation
Indices: 391691--392342 Score: 370
Period size: 159 Copynumber: 4.1 Consensus size: 157
391681 TAGTCTTCTC
* * *
391691 ATTAGGATACATGATATTGATGCTTTG-TTTCACAAGGATGGCTTTTTCCCTACCAATTTTTGTA
1 ATTAGGATACATGATATTGATGCTTTGCTTT-ACAAGAAAGGCTTTTTCCCTATCAATTTTTGTA
* * * * * *
391755 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGTATTCTAGTAATGATCTTCTTTCATATT-A
65 AAGTCAAAGTTCGTCCCTCAAATGAGACAAACATGGAATCTAGTAATCATCTTCATTC-TATTCA
* *
391819 TGATTAGGCA-TCAT-AAGACATTCTCCTCT
129 GGATTAGGCACT-ATAAACACATTCTCCT-T
* * * * * * **
391848 -TTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAATTA-TTTTCTTTGCCCTAT---TTT
1 ATTAGGATACATGATATTGATGCTTTGC-TTTACA-AGAA--AGGCTT-TTT-CCCTATCAATTT
* * ** * * * * * * *
391908 CCT-TAAAATCAAAGTTAATCCCTTAAATAAAACAAGCATCGATTCTCGTAA-CAGT-TTCCATT
60 -TTGTAAAGTCAAAGTTCGTCCCTCAAATGAGACAAACATGGAATCTAGTAATCA-TCTT-CATT
* * * *
391970 CTTTTCAGGACTGGGAACCTA-AAACACATTC-CCTTT
122 CTATTCAGGATTAGGCA-CTATAAACACATTCTCC-TT
* * * * * * *
392006 ATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-A-CCA-TTTTA
1 ATTAGGATACATGATATTGATGCTTTGCT-TTACAAGAAAGGC-TTT-TTCCCTATCAATTTTTG
* ** * * * * ** *
392068 TAAAGAATCAAAGTTTGTCTTTTAAATTAGACAATCAT-GAATACTCGTAATCATCCCCATTCTT
63 TAAAG--TCAAAGTTCGTCCCTCAAATGAGACAAACATGGAAT-CTAGTAATCATCTTCATTCTA
* * * * * * *
392132 TTCAGGATTAGGTATTGTAAACATAGTCTTCTC
125 TTCAGGATTAGGCACTATAAACACATTCTCCTT
* *
392165 ATTAGGATACATAATATTGATGCTTTGCTTTGCAAGAAAGGCTTTTTCCCTATCAATTTTTGTAA
1 ATTAGGATACATGATATTGATGCTTTGCTTTACAAGAAAGGCTTTTTCCCTATCAATTTTTGTAA
** * * *
392230 AGTCAAAGTTCGTGTCTCAAATGAGACAAACATGGAATCTAGTAATGATCTTCTTTCATATT-AT
66 AGTCAAAGTTCGTCCCTCAAATGAGACAAACATGGAATCTAGTAATCATCTTCATTC-TATTCAG
*
392294 GATTAGGCACTATAAGCACATTCTCCTT
130 GATTAGGCACTATAAACACATTCTCCTT
*
392322 ATTAGGATAAATGATATTGAT
1 ATTAGGATACATGATATTGAT
392343 TTTTTTTTTT
Statistics
Matches: 362, Mismatches: 97, Indels: 72
0.68 0.18 0.14
Matches are distributed among these distances:
156 29 0.08
157 100 0.28
158 90 0.25
159 131 0.36
160 7 0.02
161 5 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (157 bp):
ATTAGGATACATGATATTGATGCTTTGCTTTACAAGAAAGGCTTTTTCCCTATCAATTTTTGTAA
AGTCAAAGTTCGTCCCTCAAATGAGACAAACATGGAATCTAGTAATCATCTTCATTCTATTCAGG
ATTAGGCACTATAAACACATTCTCCTT
Found at i:392835 original size:20 final size:19
Alignment explanation
Indices: 392790--392845 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
392780 TGTATCGATG
* **
392790 CATTGTATCAATACATGTT
1 CATTGTATCGATACATGGA
392809 CATTGTATCGATACATGGA
1 CATTGTATCGATACATGGA
392828 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
392846 AAACTGGTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATGGA
Found at i:392901 original size:20 final size:20
Alignment explanation
Indices: 392876--392927 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
392866 ACCACTGTTT
*
392876 GTATCGATACATGGT-ACATG
1 GTATCGATACATGATGA-ATG
*
392896 GTATCGATACATGATGAATT
1 GTATCGATACATGATGAATG
392916 GTATCGATACAT
1 GTATCGATACAT
392928 TGCTTCTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
GTATCGATACATGATGAATG
Found at i:399035 original size:20 final size:20
Alignment explanation
Indices: 399010--399069 Score: 93
Period size: 23 Copynumber: 2.9 Consensus size: 20
399000 GAAATTTTTC
399010 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
399030 AGAATGTATTATCGATACATTGA
1 AGAATG---TATCGATACATTGA
399053 AGAATGTATCGATACAT
1 AGAATGTATCGATACAT
399070 CTGGAAAACC
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 17 0.46
23 20 0.54
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:401116 original size:13 final size:13
Alignment explanation
Indices: 401098--401135 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
401088 TGAACAGTGA
401098 TGTATCGATACAC
1 TGTATCGATACAC
401111 TGTATCGATACAAC
1 TGTATCGATAC-AC
*
401125 -GCATCGATACA
1 TGTATCGATACA
401136 TGAATAGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 1 0.04
13 20 0.87
14 2 0.09
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:401240 original size:21 final size:21
Alignment explanation
Indices: 401194--401242 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
401184 CAGTGTCAAT
401194 AGTGATGTATCGATACATGAA
1 AGTGATGTATCGATACATGAA
*
401215 GGTGATGTATCGATACAT-AA
1 AGTGATGTATCGATACATGAA
401235 CAGTGATG
1 -AGTGATG
401243 AATAGTGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.29
Consensus pattern (21 bp):
AGTGATGTATCGATACATGAA
Found at i:401600 original size:158 final size:159
Alignment explanation
Indices: 401356--401661 Score: 447
Period size: 158 Copynumber: 1.9 Consensus size: 159
401346 GATACCTGAC
* * *
401356 ATTGATGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCATCGTTTTATAAAGAATCAAAGTTTGC
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGC
* * *
401421 CTCTTAAATAAGACAATCATGAATA-CTCATAGTAATCCCCATTCTTTTCAGCATTGGGTACCAT
66 CTCTTAAATAAGAAAAACATGAATATC-CATAGTAATCCCCATTCTTTTCAGCATTAGGTACCAT
*
401485 AAGCATAGTCTTCTCATTATGGTACATGAT
130 AAACATAGTCTTCTCATTATGGTACATGAT
* *
401515 ATTGATGCTTTGGTTTCGCAAG-AAAGCTTTTCTTTCCACCATTTT-TGATAGAATCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTAT-AAAGAATCAAAGTTTG
* * * *
401578 TCTCTTAAATAAGAAAAACATGAATATCCATGGTAATCCCGATTCTTTTCAGGATTAGGTACCAT
65 CCTCTTAAATAAGAAAAACATGAATATCCATAGTAATCCCCATTCTTTTCAGCATTAGGTACCAT
*
401643 AAACGTAGTCTTCTCATTA
130 AAACATAGTCTTCTCATTA
401662 GGATGCACGA
Statistics
Matches: 131, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
157 1 0.01
158 109 0.83
159 21 0.16
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (159 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTATAAAGAATCAAAGTTTGC
CTCTTAAATAAGAAAAACATGAATATCCATAGTAATCCCCATTCTTTTCAGCATTAGGTACCATA
AACATAGTCTTCTCATTATGGTACATGAT
Found at i:401858 original size:204 final size:204
Alignment explanation
Indices: 401507--401888 Score: 581
Period size: 204 Copynumber: 1.9 Consensus size: 204
401497 CTCATTATGG
* *
401507 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
1 TACATGACATTGATGCTTTGGTGTCGCAAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* ** *
401572 AGTTTGTCTCTTAAATAAGAAAAACATGAATATCCATGGTAATCCCGATTCTTTTCAGGATTAGG
66 AGTTTGTCTCTTAAATAAGAAAAACATCAATATCCATAATAATCCCCATTCTTTTCAGGATTAGG
* * *
401637 TACCATAAACGTAGTCTT-CTCATTAGGATGCACGATATTAATACTTTGTTTAGTATTGATCTTC
131 CACCATAAACATAGTCTTCCT-ATTAGGATACACGATATTAATACTTTGTTTAGTATTGATCTTC
401701 TTCCATAGGA
195 TTCCATAGGA
*
401711 TACATGACATTGATGCTTTGGTGTCGCAAGGAAAGCTTTTTTTTCCACCATTTTTGATAGAATCA
1 TACATGACATTGATGCTTTGGTGTCGCAA-GAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
* *
401776 AAGTTTGTCTCTTAAATAAG-ACAACATCAATA-CTCATAATAATCCCCATTCTTTTTAGGATTA
65 AAGTTTGTCTCTTAAATAAGAAAAACATCAATATC-CATAATAATCCCCATTCTTTTCAGGATTA
* * *
401839 GGCACCATAAACATAGTCTTCCTATTAGGATATACGATATTGATGCTTTG
129 GGCACCATAAACATAGTCTTCCTATTAGGATACACGATATTAATACTTTG
401889 GTTTCGCGAA
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
203 1 0.01
204 103 0.64
205 56 0.35
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (204 bp):
TACATGACATTGATGCTTTGGTGTCGCAAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
AGTTTGTCTCTTAAATAAGAAAAACATCAATATCCATAATAATCCCCATTCTTTTCAGGATTAGG
CACCATAAACATAGTCTTCCTATTAGGATACACGATATTAATACTTTGTTTAGTATTGATCTTCT
TCCATAGGA
Found at i:403334 original size:159 final size:160
Alignment explanation
Indices: 401706--403385 Score: 692
Period size: 158 Copynumber: 10.7 Consensus size: 160
401696 TCTTCTTCCA
* * * * *
401706 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGGAAAGCTTTTTTTTCCACCATTTTTGAT--
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCCACCATTTTT-ATAA
* * *
401769 AGAATCAAAGTTTGTCTCTTAAATAAGAC-AACATCAATACTCATAATAATCCCCATTCTTTTTA
65 AGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTCTCATAATAATCCCCATTCTTTTTA
**
401833 GGATTAGGCACCATAAACATAGTCTTCCT-AT
130 GGATTAGGCATTATAAACATAGTC-TCCTCAT
* * * *
401864 TAGGATATACGATATTGATGCTTTGGTTTCGCGAA-AAAGGCTTTT-TC-CCTACCAATTTTTGT
1 TAGGATACATGATATTGATGCTTTGGTTTCGC-AAGAAAAGCTTTTCTCTCC-ACC-ATTTTTAT
* * * * * ** * ** * *
401926 -AAG-GTCTAAGTTTGT-GCCTCACATGAGACAAACATTG-ATTCTTGTAATGATCTTCTTTCAT
63 AAAGAATCAAAGTTTGTCTCCT-AAATAAGACAAACA-TGAATTCTCATAATAATCCCCATTCTT
* *
401987 TTTATGATTAGGCACTAT----A-AG-CTCCTCAT
126 TTTAGGATTAGGCATTATAAACATAGTCTCCTCAT
* ** ** * * ** * *
402016 TAGGATAAATGATATTGATAATTTTTTTTTTTTGCATCG-AATTCTTTTCTTTTCC-CTATTTTC
1 TAGGATACATGATATTG---ATGCTTTGGTTTCGCA-AGAAAAGCTTTTC-TCTCCACCATTTT-
* * * * * * * *
402079 T-TTAA-AATCAAAGTTTATC-CCTTAAATAA-ACGAGCATCG-ATTCTCATAACAGTCTCTATT
60 TATAAAGAATCAAAGTTTGTCTCC-TAAATAAGACAAACAT-GAATTCTCATAATAATCCCCATT
* * * * * ** *
402139 CTATTCAGGATTGGGAACCTA-AAACGCATTC-CCTTCAT
123 CTTTTTAGGATTAGGCA-TTATAAACATAGTCTCC-TCAT
** * * * * *
402177 TAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAATAGCTTTTCTTTCCACTA-TTTTATTAA
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCCACCATTTTTATAAA
* *
402241 GAATCAAAGTTTGTCTCCTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTTAG
66 GAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTCTCATAATAATCCCCATTCTTTTTAG
* * *
402306 GATTAGGTATTGTAAACATAGTCTTCTCAT
131 GATTAGGCATTATAAACATAGTCTCCTCAT
* * * * * *
402336 TAGGATACACGATATT-ATTGCTTT--TTACTCAAG-AAAGGTTTTTTC-CCTACCAATTTTTGT
1 TAGGATACATGATATTGA-TGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCC-ACC-ATTTTTAT
* * * * * ** *
402396 AAAG--TCTAAGTTCGT-GCCTCAAATAAGACAAACATGGATTCT-AGTAATCATCTTCTTTCTT
63 AAAGAATCAAAGTTTGTCTCCT-AAATAAGACAAACATGAATTCTCA-TAATAATCCCCATTCTT
* * * * * *
402457 TTTATGATTAAGCATTATAAGCACATTCTCCTTAT
126 TTTAGGATTAGGCATTATAAACATAGTCTCCTCAT
* * * ** * * * * ** * ** * *
402492 TAGGATAAATAATATTGATGATTTTCTTTTGCACGAAAATCATAGCTTTGCC-TTATTTTTCCTT
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCT-CCACCATTTTT-ATA
* ** * * * ***
402556 TA-AATCAAAGTTAAT-TCCTTAGATAAGACAAGCATCAATTCTCGA-AACCGTCCCCATTCTTT
64 AAGAATCAAAGTTTGTCTCC-TAAATAAGACAAACATGAATTCTC-ATAATAATCCCCATTCTTT
* * * * * *
402618 TCAGGATTGGGAAACTA-AAACACT--TCCCCTTCAA
127 TTAGGATTAGG-CATTATAAACA-TAGTCTCC-TCAT
* * ** * *
402652 TATGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATAA
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCCACCATTTTT-ATAA
* * * *
402717 A-AA-AAAAGTTTGTCTCTTAAATAAGAC-AACATGAATACTCATAGTAATCCCCATTCTTTTTA
65 AGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTCTCATAATAATCCCCATTCTTTTTA
* ** *
402779 GGATTCGGCACCATAAACATAGTCTTCTCAT
130 GGATTAGGCATTATAAACATAGTCTCCTCAT
** * * * *
402810 TAGGATACATGATATTGACACTTTGGTTTCACACGAAAGGCTTTT-TC-CCTACCAATTTTTGTA
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCC-ACC-ATTTTTATA
* * * * * ** **** *
402873 AAG--TCTAAGTTTAT-GCCTCAAATGAGACAAACATGGATTCTTGTAATAATCTTTTTTCATTT
64 AAGAATCAAAGTTTGTCTCCT-AAATAAGACAAACATGAATTCTCATAATAATCCCCATTCTTTT
*
402935 T-GTGATTAGGCACTAT----A-AG-CTCCTCAT
128 TAG-GATTAGGCATTATAAACATAGTCTCCTCAT
* * ** ** * * * ** * *
402962 TAAGATAAATGATATTGATAATTTTTTTTTTTGCATGGAATTCTTTTCTTTGCC-CAATTTTCT-
1 TAGGATACATGATATTGAT--GCTTTGGTTTCGCAAGAAAAGCTTTTCTCT-CCACCATTTT-TA
* ** * * * * *
403025 TTAA-AATCAAAGTTCATC-CCTAAAATAAGACAAGCATCG-ATTCCCATAACAGTCTCCATTCT
62 TAAAGAATCAAAGTTTGTCTCCT-AAATAAGACAAACAT-GAATTCTCATAATAATCCCCATTCT
* * * * *
403087 TTTCAGGATT-GGAAACCTA-AAACACATTC-CCTTCAT
125 TTTTAGGATTAGG-CA-TTATAAACATAGTCTCC-TCAT
* ** * * * *
403123 TAGGATACAAGGCATTCATGCTTTGGTGTCGTAAGAAAAGCTTTTCTGTCCACCA-TTTTATAAA
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCCACCATTTTTATAAA
* *
403187 GAATCAAAGTTTGTCTCCTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTTTA
66 GAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTCTCATAATAATCCCCATTC-TTTTTA
* * *
403252 GGATTAGGTATTGTAAACATAGTCTTCTCAT
130 GGATTAGGCATTATAAACATAGTCTCCTCAT
*
403283 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TCTCCACCAGTTTTTGTAA
1 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCCACCA-TTTTTATAA
* * * * * * *
403347 TG--TCTAAGTTCGTGTCTTAAATGAGACAAACATGGATTC
65 AGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTC
403386 GAGCTATGAT
Statistics
Matches: 1095, Mismatches: 323, Indels: 207
0.67 0.20 0.13
Matches are distributed among these distances:
151 4 0.00
152 41 0.04
153 4 0.00
154 30 0.03
155 109 0.10
156 131 0.12
157 76 0.07
158 270 0.25
159 204 0.19
160 171 0.16
161 54 0.05
162 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (160 bp):
TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTCTCCACCATTTTTATAAA
GAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTCTCATAATAATCCCCATTCTTTTTAG
GATTAGGCATTATAAACATAGTCTCCTCAT
Found at i:404078 original size:16 final size:16
Alignment explanation
Indices: 404057--404088 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
404047 AAAGCTTTTC
*
404057 TTTCCACCGTTTTATA
1 TTTCCACCATTTTATA
404073 TTTCCACCATTTTATA
1 TTTCCACCATTTTATA
404089 AAGAATCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (16 bp):
TTTCCACCATTTTATA
Found at i:404222 original size:175 final size:175
Alignment explanation
Indices: 403905--404223 Score: 426
Period size: 175 Copynumber: 1.8 Consensus size: 175
403895 TTCTTTTCAT
* * * * *
403905 CATTTTTTAAAGAATTAAAGTTTGTCTCTTAAGTTAAACAAACATGAATCCCCATAGTAATCCCC
1 CATTTTATAAAGAATCAAAGTTTGTCTCTTAAGATAAACAAACATAAATACCCATAGTAATCCCC
* * ** **
403970 ATTCATTCCAGTATTAGATACCATAAACATAGTCTTCTCATTAGGGTACATGATATTGCTGCTTT
66 ATTCATTCCAGGATTAGATACCACAAACATAGTCTTCTCATTAGGACACACAATATTGCTGCTTT
404035 GCTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATATTTCCAC
131 GCTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATATTTCCAC
* *
404080 CATTTTATAAAGAATCAAAGTTTGTCTCTTAA-ATAAGATAAACATAAATACTCATAGTAATCCC
1 CATTTTATAAAGAATCAAAGTTTGTCTCTTAAGATAA-ACAAACATAAATACCCATAGTAATCCC
* ** * * *
404144 CATTCGTTTTAGGATTAGGTATCACAAACATAGTCTTCTCATTAGGACACACAATATTGGTGCTT
65 CATTCATTCCAGGATTAGATACCACAAACATAGTCTTCTCATTAGGACACACAATATTGCTGC-T
*
404209 TTG-TTTTGCAAGAAA
129 TTGCTTTCGCAAGAAA
404224 GGTTTTTTCC
Statistics
Matches: 122, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
174 3 0.02
175 115 0.94
176 4 0.03
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (175 bp):
CATTTTATAAAGAATCAAAGTTTGTCTCTTAAGATAAACAAACATAAATACCCATAGTAATCCCC
ATTCATTCCAGGATTAGATACCACAAACATAGTCTTCTCATTAGGACACACAATATTGCTGCTTT
GCTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATATTTCCAC
Found at i:405419 original size:265 final size:266
Alignment explanation
Indices: 404927--405447 Score: 687
Period size: 265 Copynumber: 2.0 Consensus size: 266
404917 TCGATTCTAG
404927 TAACAGTCTCCATTTTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATCAA
1 TAACAGTCTCCATTTTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATCAA
* *
404992 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTTAAAGAATCAAAGATTTT
66 ATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTTAAAGAATCAAAGATTTT
* * * * * **
405057 CTCTTAAATAAGATAATCATGAATGCTCATGATAATCCCCATTGTTTTCGAGATTTGGTAATGCA
131 CTCTTAAATAAGACAAACATGAATCCTCATGATAATCCCCATTCTTTTCGAGATTAGGTAATAAA
* *
405122 AATATAGTCTTCTCGTTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTTCCC
196 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC
405186 TACTCA
261 TACTCA
* ** *
405192 TAACAGTCTCCATTCTTTTT-AGGATTAGGAACCTAAAACGCATTCCCTTTTTTAGGATACATGA
1 TAACAGTCTCCATT-TTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATCA
* * * *
405256 CATTAATGCTTTAGG-GTCACACGAAAAGCTTTTCTTTCCATCATTTTTTACAGAATCATAG-TT
65 AATTAATGCTTT-GGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTTAAAGAATCAAAGATT
* * *
405319 TGTCTGTTAAGTTAGACAAACATGAATCCTCAT-AGTAATCCCCATTCTTTTC-AGGATTAGGTA
129 T-TCTCTTAAATAAGACAAACATGAATCCTCATGA-TAATCCCCATTCTTTTCGA-GATTAGGTA
* * * * * *
405382 CA-AAAAACGTAGTTTTCTCATTGGGGTACATGATATTGATGCTTTGGTTTCGCAAGACAGGCTT
191 -ATAAAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
405446 TT
255 TT
405448 CTTTCCATCT
Statistics
Matches: 221, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
264 5 0.02
265 189 0.86
266 27 0.12
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (266 bp):
TAACAGTCTCCATTTTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATCAA
ATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTTAAAGAATCAAAGATTTT
CTCTTAAATAAGACAAACATGAATCCTCATGATAATCCCCATTCTTTTCGAGATTAGGTAATAAA
AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC
TACTCA
Found at i:405478 original size:159 final size:158
Alignment explanation
Indices: 405243--409999 Score: 747
Period size: 159 Copynumber: 30.3 Consensus size: 158
405233 ATTCCCTTTT
* * ** * * * *
405243 TTAGGATACATGACATTAATGCTTTAGGGTCACACGAAAAGCTTTTCTTTCCATCATTTTTTACA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAA
* * * * * * * *
405308 GAATCATAGTTTGTCTGTTAAGTTAGACAAACATGAATCCTCATAGTAATCCCCATTCTTTTCAG
65 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAAG
* *
405373 GATTAGGTACAAAAAACGTAGTTTTCTCA
130 GATTAGGTACAAAAAACATAGTCTTCTCA
* * *
405402 TTGGGGTACATGATATTGATGCTTTGGTTTCGCAAGACAGGCTTTTCTTTCCATC-TTTTTATAA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTT-TAA
405466 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAA
64 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAA
**** *
405531 GGATTAGGTATTGTAAACATAGTCTTCTCT
129 GGATTAGGTACAAAAAACATAGTCTTCTCA
* *
405561 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGC-TTT-TTCCCTACCAATTTTTGTA
1 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTCTTTCC-ATC-ATTTTT-TA
* * * * * * * ** *
405624 AAG--TCTAAGTTTGTGC-CTCAAATGAGACAAACAAGGATTCT-AGTATTGATCTTCTTTC-AT
63 AAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTCA-TAGTAATCCCCATTCTA-
* * * ** * ** * *
405684 TTTATGATTAGGCATTATAGGCATATTCTCCTCA
125 TTAAGGATTAGGTACAAAAAACATAGTCTTCTCA
* * * * ** * *
405718 TTAGGATAAATGATATTGATGATTTTCTTTCGCACGAAATTCTTTTCTCTACCCT-ATTTTTCCT
1 TTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAAGGCTTTTCT-TTCCATCATTTTT--T
* * * * * ** * *
405782 -TAGAATCAAAGTTAAT-TC-CTTAAATAAGATAAGCATCG-ATTCTCATAACAGTCCCCATACT
62 AAAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-AGAATACTCATAGTAATCCCCATTCT
* * * * * * *
405843 TTTCAGGATTGGGAAACTAAAAACACATTCCTT-TCA
124 ATTAAGGATTAGG-TACAAAAAACATAGT-CTTCTCA
* * * * * * * * *
405879 ATATGATACATGACATTGATGTTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCCGTCGTTTTTGAT
1 TTAGGATACATGATATTGATGCTTT-GT-TTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAA
* * * *
405943 AGAATCAAAGTTTGTCTCTTAAATAAGAC-AACATGAATACTAATAGTAATCCCCATTCTTTTCA
64 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAA
* * * *
406007 GGATTAGGCACGATAAACACAGTCTTC-CTA
129 GGATTAGGTACAAAAAACATAGTCTTCTC-A
* * ** *
406037 TTAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTT-TCCCCACCAATTTTTGTA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATC-ATTTTT-TA
* * * * * * * ** * * ****
406101 AAG--TCTAAGTTTATGC-CTCAAATGAGACAAACATGGATTCTTGTAATGATCTTTTTTC-ATT
63 AAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTA-T
* * ** * * *
406162 TTATGATTAGG--C--ACTATA-AG-CTCCCCA
126 TAAGGATTAGGTACAAAAAACATAGTCTTCTCA
* * ** * * * * **
406189 TTAGGATAAATAATATTGATAATTTTTTTTTTTGCATGGAATTCTTTTCTTTGCCAT-ATTTTCC
1 TTAGGATACATGATATTG---ATGCTTTGTTTCGCAAGAAAGGCTTTTCTTT-CCATCATTTT--
** ** * * * * * *
406253 TT-AA-AATCAAAGTTCATCTCTTAAATTTGAGAAGCATCG-ATTCTCGTA--ACAGCCTCCATT
60 TTAAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATACTCATAGTA-ATCC-CCATT
* * * * ** * * *
406313 CTTTTCAGGATTGGGAACCTAAAACACATTC-CCTTCA
122 CTATTAAGGATTAGGTACAAAAAACATAGTCTTC-TCA
* ** * ** * * * * *
406350 TTAGAATACATGGCATTGACGCTTTAGGATCGCAAGAAAAGCTTTTCATTCCACCGTTTTATAAA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAA
* * * * * *
406415 GAATCAAAGTTTGTCTCCTAAATAAGACAATCATGAATAGTCATAATAATCCCCAATCTTATT-A
65 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTC-TATTAA
***** *
406479 GGATTAGGTGTTGTAAATATAGTCTTCTCA
129 GGATTAGGTACAAAAAACATAGTCTTCTCA
* * * *
406509 TTAGGATACACGATATTGATGCTTT-TTACGCAAGAAAGG-TTTT-TTCCCTACCAATTTTTGTA
1 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTCTTTCC-ATC-ATTTTT-TA
* * * * * * * * * * ** *
406571 AAG--TCTAGGTTCATG-C-CTCAAATGAGACAAACATGGATTCTAATAATGATCTTCTTTCATA
63 AAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTC-TA
* * * * *
406632 TT-ATGATTAGGCATTATAAGAACAT--TCTCCTCA
125 TTAAGGATTAGGTA-CA-AAAAACATAGTCTTCTCA
* * * * * * * *
406665 TTAGGATAAATGATATTAATGATTTTCTTTTGCATGTAA-----TTC---CC-T-ATTTTTCTTT
1 TTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAAGGCTTTTCTTTCCATCA-TTTT-TTA
* ** * * ** * * *
406720 AA-AATCAAAGTTAAT-TC-CTTAAATGAGACAAGTATCG-ATTCTCATAACAGTCCCTATTCTT
63 AAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-AGAATACTCATAGTAATCCCCATTCTA
* * * * *
406781 TTTAGGATT-GGGA-AACGCAAACACATTCCTT-TCA
125 TTAAGGATTAGGTACAA--AAAACATAGT-CTTCTCA
* * * * ** * * * *
406815 ATAGGATACATGACATTGATGCTTTGGTATCGTAAGAAAAACTTTTCTTTCCACCGTTTTTGATA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAA
* * * * * **
406880 GAAACATAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATAGTAATCCTCATTCT-TTTCG
65 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAAG
** * *
406944 TTGATTAGGTATC-ATTAACATAATCTCCTCA
130 --GATTAGGTA-CAAAAAACATAGTCTTCTCA
* ** **
406975 TTAGGATACACGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTT-TCCCCA-CTAGTTTTTGT
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATC-A-TTTTT-T
* ** * * * * * * * ** *
407038 AAAG--TCTAAGTTTGTGC-CGCAAATGAGACAAAGATGGAT-TTTAGTAATAATCTTCATTCAA
62 AAAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTCA-TAGTAATCCCCATTCTA
* * *
407099 TT-TGTGATTACGTACTATAAATACAT--TCTTCTCA
125 TTAAG-GATTAGGTAC-A-AAAAACATAGTCTTCTCA
* * * ** * *
407133 TTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAA-TCTTTTCATTT-C-TC-TGTTTTC
1 TTAGGATACATGATATTGATG-CTTTGTTTCGCA-AGAAAGGCTTTTC-TTTCCATCAT-TTTT-
* ** * ** * * ** * * *
407194 CTTAA-AATCAAAGTTAATC-CTTTAAATATGACAAACATCAATTCTCGTAACAGTCTCTATTCT
61 -TAAAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCT
* * * * ** **
407257 TTTCAGGACTAGGAACCTAAAAC-TACCCTT-T-A
124 ATTAAGGATTAGGTACAAAAAACATAGTCTTCTCA
* * ** * *
407289 TTAGGATACATCACATTGACACTTTGGTGTCGCAAGGAAA-GCTTTTCTTTCCACCATTTTTTAA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAA-GAAAGGCTTTTCTTTCCATCATTTTTTAA
* * * * * *
407353 AGAATCAAAGATTT-TCTTTTAAATAAGATAATCATGAATGCTCAT-GCTAATCCCCATTCTTTT
64 AGAATCAAAG-TTTGTCTCTTAAATAAGACAAACAAGAATACTCATAG-TAATCCCCATTCTATT
* **** * *
407416 GAA-GATTTGGTATTCTAAATATAGTCTTCTCG
127 -AAGGATTAGGTACAAAAAACATAGTCTTCTCA
* * * *
407448 CTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTCCCTT-C-TAATTTTTGTA
1 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGC-TTTT-CTTTCCATCATTTTT-TA
* * * * * * * * * * ** *
407511 AAG--TCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGAAATGATCTTCTTTCATA
63 AAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTCA-TAGTAATCCCCATTC-TA
* * ** * * ** * * **
407572 TT-ATGATTAGGCAGTATAAGCGCATTCTCCTTG
125 TTAAGGATTAGGTACAAAAAACATAGTCTTCTCA
* * * * * ** *
407605 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAATTCTTTTCTTTGCC-CCATTTTCCTT
1 TTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAAGGCTTTTCTTT-CCATCATTTT--TT
* * * * * ** * * *
407669 -AA-AATCAAAGTTAAT-TC-CTTAACTAAGACAAGCATCG-ATTCTCGTAACAGTCTCCATTTT
62 AAAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-AGAATACTCATAGTAATCCCCATTCT
* * * * * *
407729 TTTCAGGATTGGGAACCTAAAACACAT-TTCCTTCT--
124 ATTAAGGATTAGGTA-C-AAAAAACATAGT-CTTCTCA
* ** * * * * * *
407764 TTAGGATACGTGACGTTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCACCGTTTTATAAA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAA
* * * * * * *
407829 GAATCAAAGTTTCTTTCTTAAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTTAG
65 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAAG
**** *
407894 GATTAGGT-TTGTAAACATCGTCTTCTCA
130 GATTAGGTACAAAAAACATAGTCTTCTCA
* * *
407922 TTAGGATACACGATATTGATGCTTTGTTTCACAAGAAAGGCTTTTTCCTTCCA--ATTTTTGTAA
1 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGC-TTTTCTTTCCATCATTTTT-TAA
* * * * * * ** * * ** * *
407985 AG--TCTAAGTTTGTGC-CTCAAATAAGACAAGCATGGATTCTTGTAATGATCTTCTTTCTTTTT
64 AGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTC-TATT
* * * * * * *
408047 ATGG-TTAGGCACTATAAGCATATTCTCCTCA
127 AAGGATTAGGTACAAAAAACATAGTCTTCTCA
* *** *
408078 TTTAGG-TAAATGATA-T--TGC------T-----GAAATTTTTTTCTTTCCCT-ATTTTCCTT-
1 -TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTT--TTA
** * ** * * * * ** *
408126 AA-AATCAAAGTTCATCTCTTAAATAAGACAAGCATCAGTTCTCGTAATGGTCCCCATTCTTTTC
63 AAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATT-
* * * *
408190 AA-GATT-GGGA-AACTAAAACACATTC-CCTTCA
127 AAGGATTAGGTACAA--AAAACATAGTCTTC-TCA
* * * * * * * * *
408221 TTAGGATACATGACATTGATGCCTTGGTGCAACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
1 TTAGGATACATGATATTGATGCTTTGTTTC-GCAAGAAAGGCTTTTCTTTCCATCATTTTTTA-A
* * * * *
408286 A-AATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTCGTAGTAATCCCCATTCTTTTCT
64 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATT-A
* * *
408350 A-GATTAGGTACCATAAACATAGTTTTCTCA
128 AGGATTAGGTACAAAAAACATAGTCTTCTCA
* * * * *
408380 TTAGGATACACGATATTGATGCTTTGGCTTCGCAAGAAAGGC-TTT-TTCCCTACCAGTTCTTAT
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCC-ATCA-TT-TTTT
* * * * * * * * * *
408443 AAAG--TCTAAGTTCGTGC-CTCAAATGAGAGAAACAAGGATTCT-AGTAATGATCCTCATTC-A
62 AAAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTCA-TAGTAATCCCCATTCTA
** * *** ** * *
408503 TTTTGTGATTACAG-ACTGTAAACGCATTCTTCTTA
125 TTAAG-GATTA-GGTACAAAAAACATAGTCTTCTCA
* * * * ** * *
408538 TTAGGATAAATGATATTGATGATTTTCTTTTGCAAGAAAATCTTTTCTTTGCCCTC-TTTTCTAT
1 TTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAAGGCTTTTCTTT-CCATCATTTTTTA-
* ** ** * * * * *
408602 AA-AATCAAAGTTAT-TCCCTTAAATAAGACAAGGATCAATTCTCATAACT-GTCTCCATTCTTT
63 AAGAATCAAAGTT-TGTCTCTTAAATAAGACAAACAAGAATACTCAT-AGTAATCCCCATTCTAT
* * * ***
408664 TCAGGGTTAGGAACCAAAAACACATTCCCTT-T-A
126 TAAGGATTAGGTA-CAAAAA-ACATAGTCTTCTCA
* * ** * *
408697 TTAGGATACATGACATTAATGCTTTGGGATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTAAA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAA
* * ** * * *
408762 GAATCAAAGTTTGTCTCTTAAGTTAGACAAACCTGAATCCTTATAGTAATCCCCATTCTTTTCAA
65 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATT-AA
* * *
408827 -GATTAGGTACCATAAACATAGTCTTCTTA
129 GGATTAGGTACAAAAAACATAGTCTTCTCA
* * * * * * * *
408856 TTAGGGTACATGATATTGATGCTTTGGTTTTGCGAGAAAAGCCTTT-TTTCCA-CCTCTTTATAT
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCAT-TTTTTAA
* * ** * * * *
408919 AGAATCAAAGTTTGTCTCTCAAATAACAGGAATATGAATACTCATTA-TAATCCCCATTCTTTTC
64 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCA-TAGTAATCCCCATTCTATTA
****
408983 AGGATTAGGTATTGTAAACATAGTCTTCTCA
128 AGGATTAGGTACAAAAAACATAGTCTTCTCA
* * * * *
409014 ATAGGATACATGATATTGACGCTTTGTTTCGCAAGAATGGC-TTT-TTCCCTACCAATTTTTGT-
1 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTCTTTCC-ATC-ATTTTT-TA
* * * ** * * * * * ** *
409076 AAG-GTCTAAGTTCATG-C-CTCAAAGGAGACAAACATGTATTCT-AGTAATGATCTTCTTTCAT
63 AAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACAAGAATACTCA-TAGTAATCCCCATTC-T
* * * * * * *
409137 ATT-ATGATTAGGCATC-ATAAGCAGATTCTCCTCA
124 ATTAAGGATTAGGTA-CAAAAAACATAGTCTTCTCA
* * * * * * * * ** *
409171 TTTGGATAAATGATATTGATGATTTTTTTTTGGATGGAATTCTTTTCTTTACCCT-ATTTTCCTT
1 TTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAAGGCTTTTCTTT-CCATCATTTT--TT
* ** * * * * * * * *
409235 -AA-AATCAACGTTAATCCCTTAAATAACACAAGCATCG-ATTCTCATAATAATCTCCATTCTTT
62 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATACTCATAGTAATCCCCATTCTAT
* * * * *
409297 TCAGGATTAGGAAGC-TAAAACACT-TTC-CCTTCA
126 TAAGGATTAGGTA-CAAAAAACA-TAGTCTTC-TCA
* * ** * * * **
409330 TTAGGATACATGACATTGATGCTTTAGTGTCATAAGAAAAGCTTTTCTTTTCATCGTTTTAAAAA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAA
* * * * * * * *
409395 GAATCAAAGTTTGTCTCTTAAACAAGGCAAACATGAATACCCACAGTAATCCCCACTCTTTTCAG
65 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAAG
* * *
409460 GATTAGGCACTATAAACATAGTCTTCTCA
130 GATTAGGTACAAAAAACATAGTCTTCTCA
* ** * *
409489 TTAGGATACACGATATTGATGCTTTGTTTCATAAGAAAGGC-TTT-TTCCCTACCAATTTTTGTA
1 TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTCTTTCC-ATC-ATTTTT-TA
* * * * * * * ** * * ** * *
409552 AAG--TCTAAGTTCCTG-C-CTCAAATGAGATAAACATGGATTCTTGTAATGATCTTCGTTCCTT
63 AAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATT-CTA
*
409613 TTATGGA-TAGG--C-----AC-TA-TAC-T-TCA
125 TTAAGGATTAGGTACAAAAAACATAGT-CTTCTCA
* * ** * * * * ** * *
409636 TTTGGATAAATGATATTGATTATTTTCTTTTGCATGGAATTCTTTTCTTTGCCCT-ATTTTTCTT
1 TTAGGATACATGATATTGA-TGCTTTGTTTCGCAAGAAAGGCTTTTCTTT-CCATCATTTTT-TA
** * ** * * ** * *
409700 AA-AATCAAAGTTCATCCCTTAAATAAGACAAGTATAG-ATTCGCGCAGTAGTCCCCATTCTTTT
63 AAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATACTCATAGTAATCCCCATTCTATT
* * * *
409763 CAGGATTAGG-A-AACTAAAACACATTC-CCTTCA
127 AAGGATTAGGTACAA--AAAACATAGTCTTC-TCA
* ** * * * * * *
409795 TTAGGATACATGACATTGATGCTTTGGCGTCGTAAGAAAAGCTTTTTTTTCTACCATTTTTGATA
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTA-A
* * * *
409860 A-AATCAATGTTTGTCTCTTAAATAAGACAAGCATGAATACTCATAGTAATCCCCATTCTATTCA
64 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAA
* *
409924 GGATTAGGTACTATAAACATAGTCTTCTCA
129 GGATTAGGTACAAAAAACATAGTCTTCTCA
*
409954 TTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
1 TTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTT
410000 TCCCCACCAA
Statistics
Matches: 3279, Mismatches: 996, Indels: 646
0.67 0.20 0.13
Matches are distributed among these distances:
141 10 0.00
142 27 0.01
143 63 0.02
144 2 0.00
146 4 0.00
147 21 0.01
148 37 0.01
149 57 0.02
150 76 0.02
151 5 0.00
152 21 0.01
153 6 0.00
154 28 0.01
155 110 0.03
156 241 0.07
157 413 0.13
158 629 0.19
159 1236 0.38
160 191 0.06
161 96 0.03
162 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
TTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTCTTTCCATCATTTTTTAAAG
AATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATAGTAATCCCCATTCTATTAAGG
ATTAGGTACAAAAAACATAGTCTTCTCA
Found at i:409021 original size:476 final size:475
Alignment explanation
Indices: 408105--409032 Score: 1119
Period size: 476 Copynumber: 2.0 Consensus size: 475
408095 GCTGAAATTT
* * *
408105 TTTTCTTTCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCAGTTCTCG
1 TTTTCTTTCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCA
* *
408170 TAATGGTCCCCATTCTTTTCAAGATTGGGAAACTAAAACACATTCCCTTCATTAGGATACATGAC
66 TAATGGTCCCCATTCTTTTCAAGATTAGGAAACAAAAACACATTCCCTTCATTAGGATACATGAC
* *
408235 ATTGATGCCTTGGTGCAACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGT
131 ATTAATGCCTTGGTGCAACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGT
* * *
408300 CTCTTAAATAAGACAAGCATGAATACTCGTAGTAATCCCCATTCTTTTCTAGATTAGGTACCATA
196 CTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAAGATTAGGTACCATA
* *
408365 AACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGCTTCGCAAGAAAGGCTTTTTCCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGCTTCGCAAGAAAGCCTTTTTCCC
* * * * * * *
408430 TACCAGTTCTTATAAAGTCTAAGTTCGTGCCTCAAATGAGAGAAACAAGGATTCTAGTAATGATC
326 TACCACTTCTTATAAAGTCAAAGTTCGTGCCTCAAATAACAGAAACAAGAATACTAGTAATAATC
* * * * *
408495 CTCATTCATTTTGTGATTACAGACTGTAAACGCATTCTTCTTATTAGGATAAATGATATTGATGA
391 CCCATTCATTTTGTGATTACAGACTGTAAACACAGTCTTCTCAATAGGATAAATGATATTGATGA
408560 TTTTCTTTTGCAAGAAAATC
456 TTTTCTTTTGCAAGAAAATC
* *
408580 TTTTCTTTGCCCTCTTTT-CTATAAAATCAAAGTT-ATTCCCTTAAATAAGACAAGGATCAATTC
1 TTTTCTTT-CCCTATTTTCCT-TAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCAATTC
* * * * *
408643 TCATAACT-GTCTCCATTCTTTTCAGGGTTAGGAACCAAAAACACATTCCCTTTATTAGGATACA
63 TCATAA-TGGTCCCCATTCTTTTCAAGATTAGGAAACAAAAACACATTCCCTTCATTAGGATACA
* * *
408707 TGACATTAATGCTTTGG-G-ATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA-AAGAATCAA
127 TGACATTAATGCCTTGGTGCA--ACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAA-AATCAA
* * * * *
408769 AGTTTGTCTCTTAAGTTAGACAAACCTGAATCCTTATAGTAATCCCCATTCTTTTCAAGATTAGG
189 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAAGATTAGG
* * * * * *
408834 TACCATAAACATAGTCTTCTTATTAGGGTACATGATATTGATGCTTTGGTTTTGCGAGAAAAGCC
254 TACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGCTTCGCAAG-AAAGCC
* * * * * *
408899 TTTTTTCC-ACCTCTT-TATATAGAA-TCAAAGTTTGT-CTCTCAAATAACAGGAATATGAATAC
318 TTTTTCCCTACCACTTCT-TATA-AAGTCAAAGTTCGTGC-CTCAAATAACAGAAACAAGAATAC
* * * *
408960 TCA-TTATAATCCCCATTC-TTTTCAG-GATTA-GGTATTGTAAACATAGTCTTCTCAATAGGAT
380 T-AGTAATAATCCCCATTCATTTT--GTGATTACAG-ACTGTAAACACAGTCTTCTCAATAGGAT
*
409021 ACATGATATTGA
441 AAATGATATTGA
409033 CGCTTTGTTT
Statistics
Matches: 382, Mismatches: 56, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
474 1 0.00
475 21 0.05
476 343 0.90
477 17 0.04
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TTTTCTTTCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCA
TAATGGTCCCCATTCTTTTCAAGATTAGGAAACAAAAACACATTCCCTTCATTAGGATACATGAC
ATTAATGCCTTGGTGCAACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAAGATTAGGTACCATA
AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGCTTCGCAAGAAAGCCTTTTTCCC
TACCACTTCTTATAAAGTCAAAGTTCGTGCCTCAAATAACAGAAACAAGAATACTAGTAATAATC
CCCATTCATTTTGTGATTACAGACTGTAAACACAGTCTTCTCAATAGGATAAATGATATTGATGA
TTTTCTTTTGCAAGAAAATC
Found at i:409319 original size:633 final size:635
Alignment explanation
Indices: 408176--409514 Score: 1639
Period size: 633 Copynumber: 2.1 Consensus size: 635
408166 CTCGTAATGG
* * * * * *
408176 TCCCCATTCTTTTCAAGATTGGGAAAC-TAAAACACATTC-CCTTCATTAGGATACATGACATTG
1 TCCCCATTCTTTTCAAGATTAGGAACCAT-AAACATAGTCTTCTT-ATTAGGATACATGATATTG
* *
408239 ATGCCTTGGTGCAACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCT
64 ATGCTTTGGTGCAACAAGAAAAGCCTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCT
* *
408304 TAAATAAGACAAGCATGAATACTCGTAGTAATCCCCATTCTTTTCTAGATTAGGTACCATAAACA
129 CAAATAACACAAGCATGAATACTCGTAGTAATCCCCATTCTTTTCTAGATTAGGTACCATAAACA
* * *
408369 TAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGCTTCGCAAGAAAGGCTTTTTCCCTACC
194 TAGTCTTCTCAATAGGATACACGATATTGACGCTTTGGCTTCGCAAGAAAGGCTTTTTCCCTACC
* * * *
408434 AGTTCTTATAAAGTCTAAGTTCGTGCCTCAAATGAGAGAAACAAGGATTCTAGTAATGATCCTCA
259 AATTCTTATAAAGTCTAAGTTCATGCCTCAAAGGAGACAAACAAGGATTCTAGTAATGATCCTCA
* * * * *
408499 TTCATTTTGTGATTACAGACTGTAAACGCATTCTTCTTATTAGGATAAATGATATTGATGATTTT
324 TTCATATTATGATTACAGACTATAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * *
408564 CTTTTGCAAGAAAATCTTTTCTTTGCCCTCTTTTCTATAAAATCAAAGTTATTCCCTTAAATAAG
389 CTTTTGCAAGAAAATCTTTTCTTTACCCTATTTTCTATAAAATCAAAGTTAATCCCTTAAATAAC
* * *
408629 ACAAGGATCAATTCTCATAACTGTCTCCATTCTTTTCAGGGTTAGGAACCAAAAACACATTCCCT
454 ACAAGCATCAATTCTCATAACTATCTCCATTCTTTTCAGGATTAGGAACCAAAAACACATTCCCT
* * *
408694 TTATTAGGATACATGACATTAATGCTTT-GGGATCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
519 TCATTAGGATACATGACATTAATGCTTTAGGG-TCACAAGAAAAGCTTTTCTTTCCACCATTTTA
* *** * * *
408758 TAAAGAATCAAAGTTTGTCTCTTAAGTTAGACAAACCTGAAT-CCTTATAGTAA
583 AAAAGAATCAAAGTTTGTCTCTTAAACAAGACAAACATGAATACC-CACAGTAA
* *
408811 TCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTTATTAGGGTACATGATATTGAT
1 TCCCCATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTTATTAGGATACATGATATTGAT
**** * *
408876 GCTTTGGTTTTGCGAGAAAAGCCTTT-TTTCCACC-TCTTTAT-ATAGAATCAAAGTTTGTCTCT
66 GCTTTGGTGCAACAAGAAAAGCCTTTCTTTCCACCGT-TTT-TGATAAAATCAAAGTTTGTCTCT
* * * ***
408938 CAAATAACAGGAA-TATGAATACTCATTA-TAATCCCCATTCTTTTC-AGGATTAGGTATTGTAA
129 CAAATAACA-CAAGCATGAATACTC-GTAGTAATCCCCATTCTTTTCTA-GATTAGGTACCATAA
* * *
409000 ACATAGTCTTCTCAATAGGATACATGATATTGACGCTTT-GTTTCGCAAGAATGGCTTTTTCCCT
191 ACATAGTCTTCTCAATAGGATACACGATATTGACGCTTTGGCTTCGCAAGAAAGGCTTTTTCCCT
* * * * * *
409064 ACCAATTTTTGTAAGGTCTAAGTTCATGCCTCAAAGGAGACAAACATGTATTCTAGTAATGATCT
256 ACCAATTCTTATAAAGTCTAAGTTCATGCCTCAAAGGAGACAAACAAGGATTCTAGTAATGATCC
* * * *
409129 TCTTTCATATTATGATT--AGGCATCATAAGCAG-ATTCTCCTCATTTGGATAAATGATATTGAT
321 TCATTCATATTATGATTACAGAC-T-ATAAAC-GCATTCTCCTCATTAGGATAAATGATATTGAT
* * * * * *
409191 GATTTTTTTTTGGATGGAATTCTTTTCTTTACCCTATTTTCCT-TAAAATCAACGTTAATCCCTT
383 GATTTTCTTTTGCAAGAAAATCTTTTCTTTACCCTATTTT-CTATAAAATCAAAGTTAATCCCTT
* * *
409255 AAATAACACAAGCATCGATTCTCATAA-TAATCTCCATTCTTTTCAGGATTAGGAAGCTAAAACA
447 AAATAACACAAGCATCAATTCTCATAACT-ATCTCCATTCTTTTCAGGATTAGGAACCAAAAACA
* * * * * *
409319 CTTTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCATAAGAAAAGCTTTTCTTTTCAT
511 CATTCCCTTCATTAGGATACATGACATTAATGCTTTAGGGTCACAAGAAAAGCTTTTCTTTCCAC
* *
409384 CGTTTTAAAAAGAATCAAAGTTTGTCTCTTAAACAAGGCAAACATGAATACCCACAGTAA
576 CATTTTAAAAAGAATCAAAGTTTGTCTCTTAAACAAGACAAACATGAATACCCACAGTAA
* * * * * *
409444 TCCCCACTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
1 TCCCCATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTTATTAGGATACATGATATTGAT
409509 GCTTTG
66 GCTTTG
409515 TTTCATAAGA
Statistics
Matches: 600, Mismatches: 90, Indels: 30
0.83 0.12 0.04
Matches are distributed among these distances:
631 3 0.00
632 2 0.00
633 397 0.66
634 119 0.20
635 75 0.12
636 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (635 bp):
TCCCCATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTTATTAGGATACATGATATTGAT
GCTTTGGTGCAACAAGAAAAGCCTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTCA
AATAACACAAGCATGAATACTCGTAGTAATCCCCATTCTTTTCTAGATTAGGTACCATAAACATA
GTCTTCTCAATAGGATACACGATATTGACGCTTTGGCTTCGCAAGAAAGGCTTTTTCCCTACCAA
TTCTTATAAAGTCTAAGTTCATGCCTCAAAGGAGACAAACAAGGATTCTAGTAATGATCCTCATT
CATATTATGATTACAGACTATAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
TTTGCAAGAAAATCTTTTCTTTACCCTATTTTCTATAAAATCAAAGTTAATCCCTTAAATAACAC
AAGCATCAATTCTCATAACTATCTCCATTCTTTTCAGGATTAGGAACCAAAAACACATTCCCTTC
ATTAGGATACATGACATTAATGCTTTAGGGTCACAAGAAAAGCTTTTCTTTCCACCATTTTAAAA
AGAATCAAAGTTTGTCTCTTAAACAAGACAAACATGAATACCCACAGTAA
Found at i:410000 original size:159 final size:158
Alignment explanation
Indices: 409750--412658 Score: 1108
Period size: 158 Copynumber: 18.4 Consensus size: 158
409740 CGCGCAGTAG
* *
409750 TCCCCATTCTTTTCAGGATTAGGAAACTA-AAACACATTC-CCTTCATTAGGATACATGACATTG
1 TCCCCATTCTTTTCAGGATTAGG-AACTATAAACACATTCTTC-TCATTAGGATACATGATATTG
** * * *
409813 ATGCTTTGGCGTCGTAAGAAAAGCTTTTTTTTCTACCATTTTTGATAAAATCAATGTTTGTCTCT
64 ATGCTTTGGTTTCGCAAGAAAAGC-TTTTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCT
* * **
409878 TAAATAAGACAAGCATGAATACTCATAGTAA
128 TAAATAAGACAAACATGAATTCTCATAACAA
* * * * *
409909 TCCCCATTCTATTCAGGATTAGGTACTATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
1 TCCCCATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGAT
* ** ** * ** * ** *
409974 GCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATACTTG-TAAAGTGTAAGTTCGTGACTCA
66 GCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATAAAATCAAAGTTTGTCTCTTA
* * ** **
410038 AATGAGATAAACATGGCTTCT-AGTAATGA
130 AATAAGACAAACATGAATTCTCA-TAACAA
** * * * * *
410067 TCTTCATTCATTTT--GTGATTA-GCACTATAAACACATTTTTCTTATTAGGATAAATAATATTG
1 TCCCCATTC-TTTTCAG-GATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTG
* *** * * * * * ** ** *
410129 ATGATTTTCATTAGCATGGAAATCTTTTCTTT--ACCCTCTTTTCCTCAAAATCAAAGTTAATCC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTTCCACCAT-TTTTGAT-AAAATCAAAGTTTGTCT
* * * ** ** *
410192 CTAAAATAAAATAAGGATCG-ATTCTCGCAACAG
126 CTTAAATAAGACAAACAT-GAATTCTCATAACAA
* * * * * *
410225 TCTCTATTCTTTTTAGGATTGGGAACCTA-AAACACATTC-CCTTCATTAGGATACATGACATTG
1 TCCCCATTCTTTTCAGGATTAGGAA-CTATAAACACATTCTTC-TCATTAGGATACATGATATTG
* * ** *
410288 ACGCTTTGGTGTCATAAGAAAAGCTTTTGTTTCCACCA-TTTT-ATAAAGAGTTAAAGTTTG-CT
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATAAA-A-TCAAAGTTTGTC-
* * * * *
410350 TCTTAACTAAGACCATCATAAATACTCATAACAA
125 TCTTAAATAAGACAAACATGAATTCTCATAACAA
* * * * * * * *
410384 TCCCTC-TTCTTTTTAGGATTAGGTATTGTAAACATAGTCTTCTCATTAGGACACACGATATTGA
1 TCCC-CATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGA
* * * * * *
410448 TACTTT-GTGTT-GCAAGAAAGGC--TTTTTCCTTACCAATTTTTTG-TAAAGTCTAAGCTCGTG
65 TGCTTTGGT-TTCGCAAGAAAAGCTTTTTTTCC--ACC-A-TTTTTGATAAAATCAAAGTTTGT-
* * * * *
410508 C-CATAAATTAGACAAACATGCATTCTTATAACGA
124 CTCTTAAATAAGACAAACATGAATTCTCATAACAA
** * * * * * * *
410542 TCTTCTTTC-ATTCTATGATCTA-GCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTG
1 TCCCCATTCTTTTC-AGGAT-TAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTG
* ** * * * *** *
410605 ATGATTTTCTTTAGCATGGAAAAGAC---TTTGCC-CTC-TTTTCCTTAAAATCAAA-TTTATTC
64 ATGCTTTGGTTTCGCA-AGAAAAG-CTTTTTTTCCAC-CATTTTTGATAAAATCAAAGTTT-GTC
* * * * *** *
410664 CCTAAAATAAGGCAAGCATCG-ATTCTTGCAATAA
125 TCTTAAATAAGACAAACAT-GAATTCTCATAACAA
** * *
410698 TTTCTATTCTTTTCAGGATTAGGAACCTA-AAACACATTACCTT-T-ATTAGGATACATGACATT
1 TCCCCATTCTTTTCAGGATTAGGAA-CTATAAACACATT--CTTCTCATTAGGATACATGATATT
* * * * * *
410760 GATGCTTTGGTGTCACAAGAAAAGCTTTTTTTCCATC-GTTTT-ATAAAGAATTAAAGTTTCTCT
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACCATTTTTGAT-AA-AATCAAAGTTTGTCT
* * * *
410823 CTTAACTAAGACAATCATAAATACTCATAACAA
126 CTTAAATAAGACAAACATGAATTCTCATAACAA
* * * ** * * * * * *
410856 TCCCCTTTCTTTTCAGGATTAGGTATTGCAAACATAGTCTTCTCATTAAGACATACGATATTGAT
1 TCCCCATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGAT
* * * * * * * *
410921 GCTTT-ATGTT-GCAAGAAAGGCTTTTTCTCTACCAATTTTTG-TAAAGTCTAAGTTCGTGC-CA
66 GCTTTGGT-TTCGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATAAAATCAAAGTTTGT-CTCT
* * ** *
410982 TAAATGAGACAAACATGCATTCTTGTAACGA
128 TAAATAAGACAAACATGAATTCTCATAACAA
** * ** * * * * *
411013 TCTTCTTTCATTTT-ATCATTCGGAACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGA
1 TCCCCATTC-TTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGA
* * * *** * *** * **
411077 TGATTT--TCTTCTGCATGGAATTTTTTTCTTTGCC-CTATTTTCCTTAAAATCAATGTTCATC-
65 TGCTTTGGT-TTC-GCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATAAAATCAAAGTTTGTCT
* * * *
411138 CTTTAAATAAGATAAGCATCG-ATTCTCGTAACAG
126 C-TTAAATAAGACAAACAT-GAATTCTCATAACAA
* * * * *
411172 TCCCCATTCTCTTCAGGTTTGAGAAACTA-AAACACATTC-CCTTCATTAGGATACATGACATTG
1 TCCCCATTCTTTTCAGGATT-AGGAACTATAAACACATTCTTC-TCATTAGGATACATGATATTG
* * * ** * *
411235 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTCTCCACTGTTTTTGATAGAATTAAAGTTTGTCTCT
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCT
* * *
411300 TAAATAAGACAAACATGAATACT-AAAAGTAA
128 TAAATAAGACAAACATGAATTCTCATAA-CAA
* * * * * * *
411331 TCCCCATTCTTTTCAAGATTACGTACCATAATCATAGTCTTCTCATTAGGATACATGATATTGAT
1 TCCCCATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGAT
* * * ** * * * * *
411396 ACTTTGGTTTCGCAAGAAAGGCATTTTCCCCACTAGTTTTTG-TAAAGTCTAAGCTTGTGC-CTC
66 GCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACCA-TTTTTGATAAAATCAAAGTTTGT-CTCTT
* * **
411459 AAATGAGACAAACAT-AGATTCT-AGCAATGA
129 AAATAAGACAAACATGA-ATTCTCA-TAACAA
* ** * * * * *
411489 TCCACATTCATTTTGTGG-TTACGCACTATAAACACATTC-TCTTCACTAGGATAAATGATATTA
1 TCCCCATTC-TTTTCAGGATTAGGAACTATAAACACATTCTTC-TCATTAGGATACATGATATTG
* ** ** ** * * **** * ** *
411552 ATGATTTTCTTTTTCTTCGAAATG-TTTTCTTTGCC-CTATTTCCCTTAAAATCAAAGATAATCC
64 ATGCTTTGGTTTCGC-AAGAAAAGCTTTT-TTT-CCACCATTTTTGATAAAATCAAAGTTTGTCT
* ** *
411615 CTTAAATAAGATAAGTATTG-ATTCTCATAACAG
126 CTTAAATAAGACAAACA-TGAATTCTCATAACAA
** * * * * *
411648 TTTCCATTATTTTCAGGATTGGGAACCTA-AAACACGTTCCCTT-T-ATTAGGAGACATGACATT
1 TCCCCATTCTTTTCAGGATTAGGAA-CTATAAACACATT--CTTCTCATTAGGATACATGATATT
* * * *
411710 GATGCTTTAGTGTCGCAAGAAAAGCTTTTTTTCCACC-GTTTT-ATAAACAACCAAAGTTTGTCT
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACCATTTTTGAT-AA-AATCAAAGTTTGTCT
* * **
411773 CTTAAATAAGATAAACATGAATACTCATAGTAA
126 CTTAAATAAGACAAACATGAATTCTCATAACAA
* * * * *
411806 TCCCCATTCTATTCAGGATTGGGAACCTA-AAACACATTCTCCTCATTGGGATACATGACATTGA
1 TCCCCATTCTTTTCAGGATTAGGAA-CTATAAACACATTCTTCTCATTAGGATACATGATATTGA
* *
411870 TGCTTTCGTGTCGCAAGAAAAGCTTTTTTTCCACCA-TTTT-ATAAAGAATCAAAGTTTGTCTCT
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACCATTTTTGAT-AA-AATCAAAGTTTGTCTCT
* * * *
411933 TAACTAAGACAATCATGAATACTCATAATAA
128 TAAATAAGACAAACATGAATTCTCATAACAA
* * * * * * *
411964 TCCCCATTCTTTTCAGGATTAGGTATTGTAAACATAGTCTTCTCATTAGGATACACGATATTGAC
1 TCCCCATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGAT
* * * * * *
412029 G-TTTTGTTTTGCAAGAAAGGC-TTTTTCCCTATCAATTTTTG-TAAAGTGC-AAGTTTGTGC-C
66 GCTTTGGTTTCGCAAGAAAAGCTTTTTTTCC-A-CCATTTTTGATAAAAT-CAAAGTTTGT-CTC
* * * *
412089 TCAAATAGGATAAACATGGAA-TCT-ATTAACGA
127 TTAAATAAGACAAACAT-GAATTCTCA-TAACAA
** * ** * * * * ** *
412121 TCTTCTTTCATTTT-ATAATTAGGCATTATAAGCACATTCTCCTCATTATCATAAATGATATTGA
1 TCCCCATTC-TTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGA
* ** ** * * * *** * ** *
412185 TGATTTTCTTTTTCTTAGAAATG-TTTTCTTTGCC-CTATTTTCCTTAAATTCAAAGTTAATCCC
65 TGCTTTGGTTTCGC-AAGAAAAGCTTTT-TTT-CCACCATTTTTGATAAAATCAAAGTTTGTCTC
* ** * *
412248 TTAAATAAGATAAGTATCG-ATTCTCGTAACAG
127 TTAAATAAGACAAACAT-GAATTCTCATAACAA
* * * *
412280 TCCCCATTCTTTTCAGGATTGGGAAACTA-AAACACATTC-CCTTCACTAGGATACATGACATTG
1 TCCCCATTCTTTTCAGGATTAGG-AACTATAAACACATTCTTC-TCATTAGGATACATGATATTG
* * * * * *
412343 ATGCTTTGGTGTCGCAAGAAAGGCATTTCTTTCCACCGTTTTTGATAGAATCTAAGTTTGTCTCT
64 ATGCTTTGGTTTCGCAAGAAAAGC-TTTTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCT
* ** *
412408 TAAATAAGACAAACATGAATACTCATAGTAT
128 TAAATAAGACAAACATGAATTCTCATAACAA
* * * * **
412439 TCCCCATTCATTTCAGGATTAGGTACAATAAACACAGTCTTC-CTATTAGGATACGCGATATTGA
1 TCCCCATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTC-ATTAGGATACATGATATTGA
* ** * * *
412503 TGCTTTGGTTTCGCAAAAAAAGCTTTTTCCCCACCAGTTTTTG-TAAACTCTAAGTTCGTGC-CT
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACCA-TTTTTGATAAAATCAAAGTTTGT-CTCT
* * * * **
412566 CATATGAGACAAACATGGATTCT-ATTAATGA
128 TAAATAAGACAAACATGAATTCTCA-TAACAA
** * * * * * * *
412597 TCTTCTTTCATTTT-ATGATTAGGCATTATAAGCACATTCTCCTCATTAGGATAAATGATATT
1 TCCCCATTC-TTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATT
412659 TATAAGTTTC
Statistics
Matches: 1991, Mismatches: 610, Indels: 299
0.69 0.21 0.10
Matches are distributed among these distances:
154 1 0.00
155 20 0.01
156 102 0.05
157 291 0.15
158 785 0.39
159 730 0.37
160 53 0.03
161 8 0.00
162 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
TCCCCATTCTTTTCAGGATTAGGAACTATAAACACATTCTTCTCATTAGGATACATGATATTGAT
GCTTTGGTTTCGCAAGAAAAGCTTTTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATTCTCATAACAA
Found at i:410308 original size:475 final size:474
Alignment explanation
Indices: 408814--411897 Score: 3454
Period size: 475 Copynumber: 6.5 Consensus size: 474
408804 ATAGTAATCC
* * * * * * *
408814 CCATTCTTTTCAAGATTAGGTACC-ATAAACATAGTCTTCTT-ATTAGGGTACATGATATTGATG
1 CCATTCTTTTCAGGATTAGGAACCTA-AAACACATTC-CCTTCATTAGGATACATGACATTGATG
* ** * * *
408877 CTTTGGTTTTGCGAGAAAAGC-CTTTTTTCCACC-TCTTTATATAGAATCAAAGTTTGTCTCTCA
64 CTTTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGT-TTTATA-AGAATCAAAGTTTGTCTCTTA
* ** * * *
408940 AATAACAGGAATATGAATACTCATTA-TAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAT
127 AATAAGACAAACATGAATACTCA-TAGTAATCCCCATTCTTTTCAGGATTAGGTACTATAAACAT
* * * *
409004 AGTCTTCTCAATAGGATACATGATATTGACGCTTTGTTTCGCAAGAATGGCTTTTTCCCTACCAA
191 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTCCCTACCAA
* * * *
409069 TTTTTGTAAGGTCTAAGTTCATGCCTCAAAGGAGACAAACATGTATTCTAGTAATGATCTTCTTT
256 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTT
* * * * *
409134 CATATTATGATTAGGCA-TCATAAGCAGATTCTCCTCATTTGGATAAATGATATTGATGATTTTT
321 CATTTTATGATTAGGCACT-ATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTC
* * * * *
409198 TTTTGGATGGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAACGTTAATCCCTTAAATAACA
385 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGA
** * *
409263 CAAGCATCGATTCTCATAATAATCT
450 CAAGCATCGATTCTCGCAACAGTCT
* *
409288 CCATTCTTTTCAGGATTAGGAAGCTAAAACACTTTCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
409353 TTAGTGTCATAAGAAAAGCTTTTCTTTT-CATCGTTTTAAAAAGAATCAAAGTTTGTCTCTTAAA
66 TTGGTGTCACAAGAAAAGCTTTT-TTTTCCACCGTTTT-ATAAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
409417 CAAGGCAAACATGAATACCCACAGTAATCCCCACTCTTTTCAGGATTAGGCACTATAAACATAGT
129 TAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACTATAAACATAGT
**
409482 CTTCTCATTAGGATACACGATATTGATGCTTTGTTTCATAAGAAAGGCTTTTTCCCTACCAATTT
194 CTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTT
* * * * *
409547 TTGTAAAGTCTAAGTTCCTGCCTCAAATGAGATAAACATGGATTCTTGTAATGATCTTCGTTCCT
259 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCAT
* *
409612 TTTATGGA-TAGGCACTAT----AC--T-T-C--ATTTGGATAAATGATATTGATTATTTTCTTT
324 TTTAT-GATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTT
* * *
409666 TGCATGGAATTCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
388 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
* * * ** *
409731 GTATAGATTCGCGCAGTAGTCC
453 GCATCGATTCTCGCAACAGTCT
*
409753 CCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** * * *
409818 TTGGCGTCGTAAGAAAAGCTTTTTTTTCTACCATTTTTGATAA-AATCAATGTTTGTCTCTTAAA
66 TTGGTGTCACAAGAAAAGCTTTTTTTTCCACC-GTTTT-ATAAGAATCAAAGTTTGTCTCTTAAA
* *
409882 TAAGACAAGCATGAATACTCATAGTAATCCCCATTCTATTCAGGATTAGGTACTATAAACATAGT
129 TAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACTATAAACATAGT
* *
409947 CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATA
194 CTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTTCCCTACCAATT
* * * * * *
410012 CTTGTAAAGTGTAAGTTCGTGACTCAAATGAGATAAACATGGCTTCTAGTAATGATCTTCATTCA
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCA
* * * * * *
410077 TTTTGTGATTA-GCACTATAAACACATTTTTCTTATTAGGATAAATAATATTGATGATTTTCATT
323 TTTTATGATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTT
* * * * * * *
410141 AGCATGGAAATCTTTTCTTTACCCTCTTTTCCTCAAAATCAAAGTTAATCCCTAAAATAAAATAA
388 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
*
410206 GGATCGATTCTCGCAACAGTCT
453 GCATCGATTCTCGCAACAGTCT
* * * *
410228 CTATTCTTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGACGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
410293 TTGGTGTCATAAGAAAAGCTTTTGTTTCCACCATTTTATAAAGAGTTAAAGTTTG-CTTCTTAAC
66 TTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTAT-AAGAATCAAAGTTTGTC-TCTTAAA
* * * ** * * *
410357 TAAGACCATCATAAATACTCATAACAATCCCTC-TTCTTTTTAGGATTAGGTATTGTAAACATAG
129 TAAGACAAACATGAATACTCATAGTAATCCC-CATTCTTTTCAGGATTAGGTACTATAAACATAG
* * *
410421 TCTTCTCATTAGGACACACGATATTGATACTTTGTGTT-GCAAGAAAGGCTTTTTCCTTACCAAT
193 TCTTCTCATTAGGATACACGATATTGATGCTTTGT-TTCGCAAGAAAGGCTTTTTCCCTACCAA-
* * * *
410485 TTTTTGTAAAGTCTAAGCTCGTGCCAT-AAATTAGACAAACATGCATTCTTA-TAACGATCTTCT
256 TTTTTGTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCT
* *
410548 TTCATTCTATGATCTA-GCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTT
319 TTCATTTTATGAT-TAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTT
* *** * * * *
410612 TCTTTAGCATGGAAA---AGACTTTGCCCTCTTTTCCTTAAAATCAAATTTATTCCCTAAAATAA
383 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAA
* * * * *
410674 GGCAAGCATCGATTCTTGCAATAATTT
448 GACAAGCATCGATTCTCGCAACAGTCT
* * *
410701 CTATTCTTTTCAGGATTAGGAACCTAAAACACATTACCTTTATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
410766 TTGGTGTCACAAGAAAAGC-TTTTTTTCCATCGTTTTATAAAGAATTAAAGTTTCTCTCTTAACT
66 TTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTAT-AAGAATCAAAGTTTGTCTCTTAAAT
* * ** * * **
410830 AAGACAATCATAAATACTCATAACAATCCCCTTTCTTTTCAGGATTAGGTATTGCAAACATAGTC
130 AAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACTATAAACATAGTC
* * * * *
410895 TTCTCATTAAGACATACGATATTGATGCTTTATGTT-GCAAGAAAGGCTTTTTCTCTACCAATTT
195 TTCTCATTAGGATACACGATATTGATGCTTTGT-TTCGCAAGAAAGGCTTTTTCCCTACCAATTT
* * *
410959 TTGTAAAGTCTAAGTTCGTGCCAT-AAATGAGACAAACATGCATTCTTGTAACGATCTTCTTTCA
259 TTGTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCA
* * * *
411023 TTTTATCATTCGGAACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTC
323 TTTTATGATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTT
* * * * * *
411088 TGCATGGAATTTTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCTTTAAATAAGATAA
388 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAA
* *
411153 GCATCGATTCTCGTAACAGTCC
453 GCATCGATTCTCGCAACAGTCT
* * *
411175 CCATTCTCTTCAGG-TTTGAGAAACTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCAGGATTAG-GAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
411239 TTTGGTGTCACAAGAAAAGCTTTTCTCTCCACTGTTTT-TGATAGAATTAAAGTTTGTCTCTTAA
65 TTTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTAT-A-AGAATCAAAGTTTGTCTCTTAA
* * * * * *
411303 ATAAGACAAACATGAATACTAAAAGTAATCCCCATTCTTTTCAAGATTACGTACCATAATCATAG
128 ATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACTATAAACATAG
* * * * * *
411368 TCTTCTCATTAGGATACATGATATTGATACTTTGGTTTCGCAAGAAAGGCATTTTCCCCACTAGT
193 TCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTTCCCTACCAAT
* * ** *
411433 TTTTGTAAAGTCTAAGCTT-GTGCCTCAAATGAGACAAACATAGATTCTAGCAATGATCCACATT
257 TTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTT
* * * * * *
411497 CATTTTGTGGTTACGCACTATAAACACATTCT-CTTCACTAGGATAAATGATATTAATGATTTTC
321 CATTTTATGATTAGGCACTATAAGCACATTCTCCTT-ATTAGGATAAATGATATTGATGATTTTC
* * * * * *
411561 TTTTTCTTCGAAATGTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGATAATCCCTTAAATAAGA
385 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGA
* * * ** *
411626 TAAGTATTGATTCTCATAACAGTTT
450 CAAGCATCGATTCTCGCAACAGTCT
* * * * *
411651 CCATTATTTTCAGGATTGGGAACCTAAAACACGTTCCCTTTATTAGGAGACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
411716 TTAGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTATAAACAACCAAAGTTTGTCTCTTAAAT
66 TTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTAT-AAGAATCAAAGTTTGTCTCTTAAAT
* * * * * *
411780 AAGATAAACATGAATACTCATAGTAATCCCCATTCTATTCAGGATTGGGAACCTA-AAACACATT
130 AAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTA-CTATAAACATAGT
* * * * * *
411844 CTCCTCATTGGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTT
194 CTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTT
411898 TTCCACCATT
Statistics
Matches: 2228, Mismatches: 332, Indels: 99
0.84 0.12 0.04
Matches are distributed among these distances:
464 4 0.00
465 305 0.14
466 99 0.04
467 1 0.00
468 1 0.00
469 3 0.00
470 2 0.00
471 130 0.06
472 154 0.07
473 147 0.07
474 228 0.10
475 803 0.36
476 346 0.16
477 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTATAAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACTATAAACATAGTCT
TCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTT
TATGATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGC
ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCA
TCGATTCTCGCAACAGTCT
Found at i:411161 original size:947 final size:940
Alignment explanation
Indices: 408814--411897 Score: 3541
Period size: 947 Copynumber: 3.3 Consensus size: 940
408804 ATAGTAATCC
* * * * * * *
408814 CCATTCTTTTCAAGATTAGGTACC-ATAAACATAGT-CTTCTTATTAGGGTACATGATATTGATG
1 CCATTCTTTTCAGGATTAGGAACCTA-AAACACATTCCCT-TTATTAGGATACATGACATTGATG
* * * * * *
408877 CTTTGGTTTTGCGAGAAAAGCCTTTTTTCCACC-TCTTTATATAGAATCAAAGTTTGTCTCTCAA
64 CTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGT-TTTATAAAGAATCAAAGTTTGTCTCTTAA
* * * *
408941 ATAACAGGAAT-ATGAATACTCATTATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACATA
128 ATAAGA-CAATCATGAATACTCATAATAATCCCCATTCTATTCAGGATTAGGTATTGTAAACATA
* * * *
409005 GTCTTCTCAATAGGATACATGATATTGACGC-TTTGTTTCGCAAGAATGGCTTTTTCCCTACCAA
192 GTCTTCTCATTAGGATACACGATATTGATGCTTTTG-TTCGCAAGAAAGGCTTTTTCCCTACCAA
* * * *
409069 TTTTTGTAAGGTCTAAGTTCATGCCTCAAAGGAGACAAACATGTATTCTAGTAATGATCTTCTTT
256 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGATCTTCTTT
* * * *
409134 CATATTATGATTAGGCA-TCATAAGCAGATTCTCCTCATTTGGATAAATGATATTGATGATTTTT
321 CATTTTATGATT-GGCACT-ATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGA-TTTT
* * * *
409198 TTTTGGATGGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAACGTTAATCCCTTAAATAACA
383 CTTTGCATGGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAAA
* * * * * * *
409263 CAAGCATCGATTCTCATAATAATCTCCATTCTTTTCAGGATTAGGAAGCTAAAACACTTTCCCTT
448 TAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAACTAAAACACATTCCCTT
* * * *
409328 CATTAGGATACATGACATTGATGCTTTAGTGTCATAAGAAAAGCTTTTCTTTTCATCGTTTTAAA
513 CATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTATA
* * * * * *
409393 AAGAATCAAAGTTTGTCTCTTAAAC-AAGGCAAACATGAATACCCACAGTAATCCCCACTCTTTT
578 AAGAATTAAAGTTTGTCTCTT-AACTAAGACAAACATGAATACTCAAAATAATCCCCATTCTTTT
* *
409457 CAGGATTAGGCACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGT-TT-CA
642 CAGGATTAGGTACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGTGTTGC-
* * *
409520 TAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCCTGCCTCAAATGAGATAAACA
706 -AAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATGAGACAAACA
* * * * *
409585 TGGATTCTTGTAATGATCTTCGTTCCTTTTATGGA-TAGGCACTAT-----A--CT-TCATTTGG
770 T-GATTCTTATAATGATCTTCATTCATTTTAT-GATTACGCACTATAACACATTCTCTCATTAGG
* * * *
409641 ATAAATGATATTGATTATTTTCTTTTGCATGGAATTCTTTTCTTTGCCCTATTTTTCTTAAAATC
833 ATAAATGATATTGATGATTTTCTTTTGCATGGAA---ATGTCTTTGCCCTATTTTCCTTAAAATC
* * * **
409706 AAAGTTCATCCCTTAAATAAGACAAGTATAGATTCGCGCAGTAGTCC
895 AAA-TTTATCCCTTAAATAAGACAAGTATAGATTCTCGCAATAGTTT
* *
409753 CCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTTATTAGGATACATGACATTGATGCT
* * * * *
409818 TTGGCGTCGTAAGAAAAGCTTTTTTTTCTACCATTTT-TGATAA-AATCAATGTTTGTCTCTTAA
66 TTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTAT-A-AAGAATCAAAGTTTGTCTCTTAA
* * * *
409881 ATAAGACAAGCATGAATACTCATAGTAATCCCCATTCTATTCAGGATTAGGTACTATAAACATAG
128 ATAAGACAATCATGAATACTCATAATAATCCCCATTCTATTCAGGATTAGGTATTGTAAACATAG
* *
409946 TCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAAT
193 TCTTCTCATTAGGATACACGATATTGATGCTTTTG-TTCGCAAGAAAGGCTTTTTCCCTACCAAT
** * * * *
410011 ACTTGTAAAGTGTAAGTTCGTGACTCAAATGAGATAAACATGGC-TTCTAGTAATGATCTTCATT
257 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT-GCATTCTAGTAATGATCTTCTTT
* * * * * *
410075 CATTTTGTGATTAGCACTATAAACACATTTTTCTTATTAGGATAAATAATATTGATGATTTTCAT
321 CATTTTATGATTGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTC-T
* * * * *
410140 TAGCATGGAAATCTTTTCTTTACCCTCTTTTCCTCAAAATCAAAGTTAATCCCTAAAATAAAATA
385 TTGCATGGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAAATA
* * * * *
410205 AGGATCGATTCTCGCAACAGTCTCTATTCTTTTTAGGATTGGGAACCTAAAACACATTCCCTTCA
450 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAACTAAAACACATTCCCTTCA
* * *
410270 TTAGGATACATGACATTGACGCTTTGGTGTCATAAGAAAAGCTTTTGTTTCCACCATTTTATAAA
515 TTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTATAAA
* * * * * * *
410335 GAGTTAAAGTTTG-CTTCTTAACTAAGACCATCATAAATACTCATAACAATCCCTC-TTCTTTTT
580 GAATTAAAGTTTGTC-TCTTAACTAAGACAAACATGAATACTCAAAATAATCCC-CATTCTTTTC
* * *
410398 AGGATTAGGTATTGTAAACATAGTCTTCTCATTAGGACACACGATATTGATACTTTGTGTTGCAA
643 AGGATTAGGTACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGTGTTGCAA
* *
410463 GAAAGGCTTTTTCCTTACCAATTTTTTGTAAAGTCTAAGCTCGTGCCAT-AAATTAGACAAACAT
708 GAAAGGCTTTTTCCCTACCAA-TTTTTGTAAAGTCTAAGCTCGTGCC-TCAAATGAGACAAACAT
* * *
410527 GCATTCTTATAACGATCTTCTTTCATTCTATGATCTA-GCACTATAAGCACATTCTCCTCATTAG
771 G-ATTCTTATAATGATCTTCATTCATTTTATGAT-TACGCACTATAA-CACATTCT-CTCATTAG
* * * *
410591 GATAAATGATATTGATGATTTTCTTTAGCATGGAAAAGACTTTGCCCTCTTTTCCTTAAAATCAA
832 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * *
410656 ATTTATTCCCTAAAATAAGGCAAGCATCGATTCTTGCAATAATTT
897 ATTTA-TCCCTTAAATAAGACAAGTATAGATTCTCGCAATAGTTT
* *
410701 CTATTCTTTTCAGGATTAGGAACCTAAAACACATTACCTTTATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTTATTAGGATACATGACATTGATGCT
* * * * *
410766 TTGGTGTCACAAGAAAAGCTTTTTTTCCATCGTTTTATAAAGAATTAAAGTTTCTCTCTTAACTA
66 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
410831 AGACAATCATAAATACTCATAACAATCCCCTTTCTTTTCAGGATTAGGTATTGCAAACATAGTCT
131 AGACAATCATGAATACTCATAATAATCCCCATTCTATTCAGGATTAGGTATTGTAAACATAGTCT
* * * *
410896 TCTCATTAAGACATACGATATTGATGCTTTATGTT-GCAAGAAAGGCTTTTTCTCTACCAATTTT
196 TCTCATTAGGATACACGATATTGATGCTTT-TGTTCGCAAGAAAGGCTTTTTCCCTACCAATTTT
* *
410960 TGTAAAGTCTAAGTTCGTGCCAT-AAATGAGACAAACATGCATTCTTGTAACGATCTTCTTTCAT
260 TGTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGCATTCTAGTAATGATCTTCTTTCAT
* *
411024 TTTATCATTCGGAACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTCT
324 TTTATGATT-GGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTT-T
* * * * * *
411089 GCATGGAATTTTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCTTTAAATAAGATAAG
387 GCATGGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAAATAAG
* * * *
411154 CATCGATTCTCGTAACAGTCCCCATTCTCTTCAGGTTTGAGAAACTAAAACACATTCCCTTCATT
452 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAACTAAAACACATTCCCTTCATT
* * * *
411219 AGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTCTCCACTGTTTT-TGATAG
517 AGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTAT-AAAG
* *
411283 AATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT-AAAAGTAATCCCCATTCTTTTCAA
581 AATTAAAGTTTGTCTCTTAACTAAGACAAACATGAATACTCAAAA-TAATCCCCATTCTTTTCAG
* * * *
411347 GATTACGTACCATAATCATAGTCTTCTCATTAGGATACATGATATTGATACTTTG-GTTTCGCAA
645 GATTAGGTACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGTG-TT-GCAA
* * * * *
411411 GAAAGGCATTTTCCCCACTAGTTTTTGTAAAGTCTAAGCTTGTGCCTCAAATGAGACAAACATAG
708 GAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATGAGACAAACAT-G
* ** * * *
411476 ATTC-TAGCAATGATCCACATTCATTTTGTGGTTACGCACTATAAACACATTCTCTTCACTAGGA
772 ATTCTTA-TAATGATCTTCATTCATTTTATGATTACGCACTAT-AACACATTCTC-TCATTAGGA
* * * * *
411540 TAAATGATATTAATGATTTTCTTTTTCTTCGAAATGTTTTCTTTGCCCTATTTCCCTTAAAATCA
834 TAAATGATATTGATGATTTTCTTTTGCATGGAAATG---TCTTTGCCCTATTTTCCTTAAAATCA
* * * * ** *
411605 AAGATAATCCCTTAAATAAGATAAGTATTGATTCTCATAACAGTTT
896 AA-TTTATCCCTTAAATAAGACAAGTATAGATTCTCGCAATAGTTT
* * * *
411651 CCATTATTTTCAGGATTGGGAACCTAAAACACGTTCCCTTTATTAGGAGACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTTATTAGGATACATGACATTGATGCT
* * *
411716 TTAGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTATAAACAACCAAAGTTTGTCTCTTAAATA
66 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * * * *
411781 AGATAAACATGAATACTCATAGTAATCCCCATTCTATTCAGGATTGGGAACCT-AAAACACATTC
131 AGACAATCATGAATACTCATAATAATCCCCATTCTATTCAGGATTAGGTA-TTGTAAACATAGTC
* * * * * *
411845 TCCTCATTGGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTT
195 TTCTCATTAGGATACACGATATTGATGCTTTTGT-TCGCAAGAAAGGCTTTTT
411898 TTCCACCATT
Statistics
Matches: 1799, Mismatches: 288, Indels: 104
0.82 0.13 0.05
Matches are distributed among these distances:
939 76 0.04
940 443 0.25
941 166 0.09
942 5 0.00
945 2 0.00
946 101 0.06
947 544 0.30
948 157 0.09
949 4 0.00
950 244 0.14
951 57 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (940 bp):
CCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTTATTAGGATACATGACATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTTAAATA
AGACAATCATGAATACTCATAATAATCCCCATTCTATTCAGGATTAGGTATTGTAAACATAGTCT
TCTCATTAGGATACACGATATTGATGCTTTTGTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGATCTTCTTTCATTT
TATGATTGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTGCAT
GGAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAAATAAGCATC
GATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAACTAAAACACATTCCCTTCATTAGGA
TACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATTA
AAGTTTGTCTCTTAACTAAGACAAACATGAATACTCAAAATAATCCCCATTCTTTTCAGGATTAG
GTACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGTGTTGCAAGAAAGGCT
TTTTCCCTACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATGAGACAAACATGATTCTTATA
ATGATCTTCATTCATTTTATGATTACGCACTATAACACATTCTCTCATTAGGATAAATGATATTG
ATGATTTTCTTTTGCATGGAAATGTCTTTGCCCTATTTTCCTTAAAATCAAATTTATCCCTTAAA
TAAGACAAGTATAGATTCTCGCAATAGTTT
Found at i:411997 original size:158 final size:157
Alignment explanation
Indices: 408128--412530 Score: 1203
Period size: 159 Copynumber: 27.9 Consensus size: 157
408118 TTTTCCTTAA
** * * * * * * ** *
408128 AATCAAAGTTCATCTCTTAAATAAGACAAGCATCAGTTCTCGTAATGGTCCCCATTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * *
408193 ATTGGGAAACTAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCCTTGGTG-CAACAA
66 ATTAGG-AACTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTC-GCAA
*
408256 GAAAAGCTTTTCTTTCCACCGTTTT-TGATAA-
128 GAAAAGCTTTT-TTTCCACCATTTTAT-A-AAG
* * * *
408287 AATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATACTCGTAGTAATCCCCATTCTTTTCTA-
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTC-AG
* * * * * * *
408351 GATTAGGTACCATAAACATAGTT-TTCTCATTAGGATACACGATATTGATGCTTTGGCT-TCGCA
65 GATTAGG-AACTTAAACACA-TTCTCCTCATTAGGATACATGACATTGATGCTTTCG-TGTCGCA
* *
408414 AGAAAGGC-TTTTTCCCTACCAGTTCTTATAAAG
127 AGAAAAGCTTTTTTTCC-ACCA-TT-TTATAAAG
* * * * * * * * * *
408447 --TCTAAGTTCGTGC-CTCAAATGAGAGAAACAAGGATTCT-AGTAATGATCCTCATTCATTTT-
1 AATCAAAGTTTGT-CTCTTAAATAAGATAAACATGAATACTCA-TAATAATCCCCATTC-TTTTC
* * * * * * * * *
408507 -GTGATTA-CAGACTGTAAACGCATTCTTCTTATTAGGATAAATGATATTGATGATTTTC-TTTT
63 AG-GATTAGGA-ACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTCGTGTC
* *
408569 GCAAGAAAATCTTTTCTTTGCC-CTC-TTTTCTATAA-
124 GCAAGAAAAGCTTTT-TTT-CCAC-CATTTTATA-AAG
* * ** * * * *
408604 AATCAAAGTTAT-TCCCTTAAATAAGACAAGGATCAATTCTCATAACT-GTCTCCATTCTTTTCA
1 AATCAAAGTT-TGTCTCTTAAATAAGATAAACATGAATACTCATAA-TAATCCCCATTCTTTTCA
* ** * * *
408667 GGGTTAGGAACCAAAAACACATTC-CCTTTATTAGGATACATGACATTAATGCTTT-GGGATCGC
64 GGATTAGGAA-CTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTG-TCGC
*
408730 AAGAAAAGCTTTTCTTTCCACCATTTTTTAAAG
126 AAGAAAAGCTTTT-TTTCCACCATTTTATAAAG
* * * * * * * *
408763 AATCAAAGTTTGTCTCTTAAGTTAGACAAACCTGAATCCTTATAGTAATCCCCATTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * * * * * *
408828 ATTAGGTACCATAAACATAGTCTTCTTATTAGGGTACATGATATTGATGCTTTGGTTTTGCGAGA
66 ATTAGG-AACTTAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGA
* *
408893 AAAGCCTTTTTTCCACC-TCTTTATATAG
130 AAAGCTTTTTTTCCACCAT-TTTATAAAG
* * ** * *
408921 AATCAAAGTTTGTCTCTCAAATAACAGGAATATGAATACTCATTATAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * * *
408986 ATTAGGTATTGTAAACATAGTCTTCTCAATAGGATACATGATATTGACGCTTT-GTTTCGCAAGA
66 ATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGA
** * *
409050 ATGGC-TTTTTCCCTACCAATTTT-TGTAAG
130 AAAGCTTTTTTTCC-ACC-ATTTTAT-AAAG
* * * ** * * * * ** * *
409079 -GTCTAAGTTCATG-C-CTCAAAGGAGACAAACATGTATTCT-AGTAATGATCTTCTTTCATATT
1 AATCAAAGTT--TGTCTCTTAAATAAGATAAACATGAATACTCA-TAATAATCCCCATTC-TTTT
* * * * * * * * * ** * * *
409140 -ATGATTAGGCATCATAAGCAGATTCTCCTCATTTGGATAAATGATATTGATGATTTTTTTTTGG
62 CAGGATTAGG-AACTTAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGC
* * ** * * *
409204 ATGGAATTCTTTTCTTTACC-CTATTTTCCTTAA-
126 AAGAAAAGCTTTT-TTT-CCACCATTTT-ATAAAG
* ** * * * * * *
409237 AATCAACGTTAATCCCTTAAATAACACAAGCATCG-ATTCTCATAATAATCTCCATTCTTTTCAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACAT-GAATACTCATAATAATCCCCATTCTTTTCAG
* * * **
409301 GATTAGGAAGCTAAAACACTTTC-CCTTCATTAGGATACATGACATTGATGCTTTAGTGTCATAA
65 GATTAGGAA-CTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
* * * *
409365 GAAAAGCTTTTCTTTTCATCGTTTTAAAAAG
128 GAAAAGCTTTT-TTTCCACCATTTTATAAAG
* ** * * * *
409396 AATCAAAGTTTGTCTCTTAAACAAGGCAAACATGAATACCCACAGTAATCCCCACTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * **
409461 ATTAGGCACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCATAAGA
66 ATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGA
* * *
409525 AAGGC-TTTTTCCCTACCAATTTTTGTAAAG
130 AAAGCTTTTTTTCC-ACC-A-TTTTATAAAG
* * * * * ** * ** *
409555 --TCTAAGTTCCTG-C-CTCAAATGAGATAAACATGGATTCTTGTAATGATCTTCGTTCCTTTT-
1 AATCAAAGTT--TGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATT-CTTTTC
* * * * * ** * *
409615 ATGGA-TAGG--C----AC-TATACT--TCATTTGGATAAATGATATTGATTATTTTC-TTTTGC
63 A-GGATTAGGAACTTAAACACATTCTCCTCATTAGGATACATGACATTGA-TGCTTTCGTGTCGC
* * ** * * *
409669 ATGGAATTCTTTTCTTTGCC-CTATTTTTCTTAA-
126 AAGAAAAGCTTTT-TTT-CCACCA-TTTTATAAAG
** * * ** * * ** * *
409702 AATCAAAGTTCATCCCTTAAATAAGACAAGTAT-AGATTCGCGCAGTAGTCCCCATTCTTTTCAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGA-ATACTCATAATAATCCCCATTCTTTTCAG
* * * *
409766 GATTAGGAAACTAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGCGTCGTAA
65 GATTAGG-AACTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
*
409830 GAAAAGCTTTTTTTTCTACCATTTT-TGATAA-
128 GAAAAGC-TTTTTTTCCACCATTTTAT-A-AAG
* * * * *
409861 AATCAATGTTTGTCTCTTAAATAAGACAAGCATGAATACTCATAGTAATCCCCATTCTATTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * *
409926 ATTAGGTACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
66 ATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGA
* ** * *
409991 AAGGCTTTTTCCCCACCAATACTTGTAAAG
130 AAAGCTTTTTTTCCACC-AT-TTTATAAAG
** * ** * * ** * * **
410021 --TGTAAGTTCGTGACTCAAATGAGATAAACATGGCTTCT-AGTAATGATCTTCATTCATTTT--
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCA-TAATAATCCCCATTC-TTTTCA
* * * * * * * * * *
410081 GTGATTA-GCACTATAAACACATTTTTCTTATTAGGATAAATAATATTGATGATTTTCAT-TAGC
64 G-GATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTCGTGTCGC
* * * * *
410144 ATGGAAATCTTTTCTTTACC-CTC-TTTTCCTCAA-
126 AAGAAAAGCTTTT-TTT-CCAC-CATTTT-ATAAAG
** * * * ** * ** * * * * *
410177 AATCAAAGTTAATCCCTAAAATAAAATAAGGATCG-ATTCTCGCAACAGTCTCTATTCTTTTTAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACAT-GAATACTCATAATAATCCCCATTCTTTTCAG
* * * * **
410241 GATTGGGAACCTAAAACACATTC-CCTTCATTAGGATACATGACATTGACGCTTTGGTGTCATAA
65 GATTAGGAA-CTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
410305 GAAAAGCTTTTGTTTCCACCATTTTATAAAG
128 GAAAAGCTTTT-TTTCCACCATTTTATAAAG
* * * ** * * * *
410336 AGTTAAAGTTTG-CTTCTTAACTAAGACCATCATAAATACTCATAACAATCCCTC-TTCTTTTTA
1 AATCAAAGTTTGTC-TCTTAAATAAGATAAACATGAATACTCATAATAATCCC-CATTCTTTTCA
* * * * * * * * * *
410399 GGATTAGGTATTGTAAACATAGTCTTCTCATTAGGACACACGATATTGATACTTT-GTGTTGCAA
64 GGATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
* *** *
410463 GAAAGGCTTTTTCCTTACCAATTTTTTGTAAAG
128 GAAAAGCTTTTT--TT-CCACCATTTTATAAAG
* * * * * * * * * ** ** * *
410496 --TCTAAGCTCGTGC-CATAAATTAGACAAACATGCATTCTTATAACGATCTTCTTTC-ATTCTA
1 AATCAAAGTTTGT-CTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTC-A
* * * * * * * *
410557 TGATCTA-GCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC-TTTAGC
64 GGAT-TAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTCGTGTCGC
* * * *
410620 ATGGAAAAGAC---TTTGCC-CTC-TTTTCCTTAA-
126 A-AGAAAAG-CTTTTTTTCCAC-CATTTT-ATAAAG
* * * ** * * *** ** *
410650 AATCAAA-TTTATTCCCTAAAATAAGGCAAGCATCG-ATTCTTGCAATAATTTCTATTCTTTTCA
1 AATCAAAGTTT-GTCTCTTAAATAAGATAAACAT-GAATACTCATAATAATCCCCATTCTTTTCA
* * * * *
410713 GGATTAGGAACCTAAAACACATTAC-CTTTATTAGGATACATGACATTGATGCTTTGGTGTCACA
64 GGATTAGGAA-CTTAAACACATT-CTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCA
* *
410777 AGAAAAGCTTTTTTTCCATCGTTTTATAAAG
127 AGAAAAGCTTTTTTTCCACCATTTTATAAAG
* * * * * * * *
410808 AATTAAAGTTTCTCTCTTAACTAAGACAATCATAAATACTCATAACAATCCCCTTTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * * * * *
410873 ATTAGGTA-TTGCAAACATAGTCTTCTCATTAAGACATACGATATTGATGCTTT-ATGTTGCAAG
66 ATTAGGAACTT--AAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAG
* * * *
410936 AAAGGCTTTTTCTCTACCAATTTTTGTAAAG
129 AAAAGCTTTTTTTCCACC-A-TTTTATAAAG
* * * * * * * ** ** ** *
410967 --TCTAAGTTCGTGC-CATAAATGAGACAAACATGCATTCTTGTAACGATCTTCTTTCATTTT-A
1 AATCAAAGTTTGT-CTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTC-TTTTCA
** * * * * * *
411028 TCATTCGGAACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTC-T-TCTGC
64 GGATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTCGTGTC-GC
* * *** * * *
411091 ATGGAATTTTTTTCTTTGCC-CTATTTTCCTTAA-
126 AAGAAAAGCTTTT-TTT-CCACCATTTT-ATAAAG
* ** * * * * * *
411124 AATCAATGTTCATC-CTTTAAATAAGATAAGCATCG-ATTCTCGTAACAGTCCCCATTCTCTTCA
1 AATCAAAGTTTGTCTC-TTAAATAAGATAAACAT-GAATACTCATAATAATCCCCATTCTTTTCA
* * * * *
411187 GGTTTGAGAAACTAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACA
64 GGATT-AGGAACTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTCGCA
* ** *
411251 AGAAAAGCTTTTCTCTCCACTGTTTT-TGATAG
127 AGAAAAGCTTTT-TTTCCACCATTTTAT-AAAG
* * * *
411283 AATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT-AAAAGTAATCCCCATTCTTTTCAA
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAA-TAATCCCCATTCTTTTCAG
* * * * * * * * * * *
411347 GATTACGTACCATAATCATAGTCTTCTCATTAGGATACATGATATTGATACTTTGGTTTCGCAAG
65 GATTA-GGAACTTAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAG
* * ** * *
411412 AAAGGCATTTTCCCCACTAGTTTTTGTAAAG
129 AAAAGCTTTTTTTCCACCA--TTTTATAAAG
* * * * * * * * *
411443 --TCTAAGCTTGTGC-CTCAAATGAGACAAACAT-AGATTCT-AGCAATGATCCACATTCATTTT
1 AATCAAAGTTTGT-CTCTTAAATAAGATAAACATGA-ATACTCA-TAATAATCCCCATTC-TTTT
** * * * * * * * * * *
411503 GTGG-TTACGCACTATAAACACATTCTCTTCACTAGGATAAATGATATTAATGATTTTCTTTTTC
62 CAGGATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTC-GTGTC
* * * ** *
411567 TTC--GAAATG-TTTTCTTTGCC-CTATTTCCCTTAA-
124 -GCAAGAAAAGCTTTT-TTT-CCACCATTT-TATAAAG
* ** * ** * * * ** *
411600 AATCAAAGATAATCCCTTAAATAAGATAAGTATTG-ATTCTCATAACAGTTTCCATTATTTTCAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACA-TGAATACTCATAATAATCCCCATTCTTTTCAG
* * * * * *
411664 GATTGGGAACCTAAAACACGTTC-CCTTTATTAGGAGACATGACATTGATGCTTTAGTGTCGCAA
65 GATTAGGAA-CTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
* *
411728 GAAAAGCTTTTTTTCCACCGTTTTATAAAC
128 GAAAAGCTTTTTTTCCACCATTTTATAAAG
* * *
411758 AACCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAGTAATCCCCATTCTATTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * *
411823 ATTGGGAACCTAAAACACATTCTCCTCATTGGGATACATGACATTGATGCTTTCGTGTCGCAAGA
66 ATTAGGAA-CTTAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGA
411888 AAAGCTTTTTTTCCACCATTTTATAAAG
130 AAAGCTTTTTTTCCACCATTTTATAAAG
* * *
411916 AATCAAAGTTTGTCTCTTAACTAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * * * * *
411981 ATTAGGTATTGTAAACATAGTCTTCTCATTAGGATACACGATATTGACG-TTTTGTTTTGCAAGA
66 ATTAGGAACT-TAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGA
* * * *
412045 AAGGC-TTTTTCCCTATCAATTTTTGTAAAG
130 AAAGCTTTTTTTCC-A-CCA-TTTTATAAAG
* * ** ** *
412075 --TGC-AAGTTTGTGC-CTCAAATAGGATAAACATGGAAT-CT-ATTAACGATCTTCTTTCATTT
1 AAT-CAAAGTTTGT-CTCTTAAATAAGATAAACAT-GAATACTCA-TAATAATCCCCATTC-TTT
** * ** * * * * *
412134 T-ATAATTAGGCA-TTATAAGCACATTCTCCTCATTATCATAAATGATATTGATGATTTTCTTTT
61 TCAGGATTAGGAACTTA-AA-CACATTCTCCTCATTAGGATACATGACATTGATG-CTTTC-GTG
** * * * *
412197 TC-TTAGAAATG-TTTTCTTTGCC-CTATTTTCCTTAA-
122 TCGCAAGAAAAGCTTTT-TTT-CCACCATTTT-ATAAAG
* ** * ** * * * *
412232 ATTCAAAGTTAATCCCTTAAATAAGATAAGTATCG-ATTCTCGTAACAGTCCCCATTCTTTTCAG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACAT-GAATACTCATAATAATCCCCATTCTTTTCAG
* * * *
412296 GATTGGGAAACTAAAACACATTC-CCTTCACTAGGATACATGACATTGATGCTTTGGTGTCGCAA
65 GATTAGG-AACTTAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
* * * *
412360 GAAAGGCATTTCTTTCCACCGTTTT-TGATAG
128 GAAAAGC-TTTTTTTCCACCATTTTAT-AAAG
* * * * *
412391 AATCTAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTATTCCCCATTCATTTCAGG
1 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
* * * ** * * * *
412456 ATTAGGTACAATAAACACAGTCTTCCT-ATTAGGATACGCGATATTGATGCTTTGGTTTCGCAAA
66 ATTAGGAAC-TTAAACACATTC-TCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAG
412520 AAAAGCTTTTT
129 AAAAGCTTTTT
412531 CCCCACCAGT
Statistics
Matches: 3063, Mismatches: 905, Indels: 553
0.68 0.20 0.12
Matches are distributed among these distances:
147 19 0.01
148 30 0.01
149 45 0.01
150 4 0.00
151 2 0.00
152 1 0.00
154 5 0.00
155 21 0.01
156 102 0.03
157 436 0.14
158 988 0.32
159 1299 0.42
160 96 0.03
161 15 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATAATAATCCCCATTCTTTTCAGG
ATTAGGAACTTAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAA
AAGCTTTTTTTCCACCATTTTATAAAG
Found at i:413681 original size:475 final size:469
Alignment explanation
Indices: 411806--413927 Score: 2262
Period size: 475 Copynumber: 4.5 Consensus size: 469
411796 CTCATAGTAA
* * * * * *
411806 TCCCCATTCTATTCAGGATTGGGAACCTAAAACACATTCTCC-TCATTGGGATACATGACATTGA
1 TCCCCATTCTTTTCAGGATTAGGAAACTAAAACACATTC-CCTTCAATAGAATACATGACATTGA
* *
411870 TGCTTTCGTGTCGCAAGAAAAGCTTTT-TTTCCACCATTTTATAAAGAATCAAAGTTTGTCTCTT
65 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTT
*
411934 AACTAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAT
130 AAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAT
* * * *
411999 AGTCTTCTCATTAGGATACACGATATTGACGTTTTGTTTTGCAAGAAAGGCTTTTT-CCCTATCA
195 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTACCC-AACA
** *
412063 ATTTT-TGTAAAGT-GCAAGTTTGTGCC-TCAAATAGGATAAACATGGAATCTAT-TAACGATCT
259 ATTTTCT-TAAAGTCG-AAGTTCATGCCAT-AAAT---A-AAAC--GGATTCT-TGTAACGATCT
* * * **
412124 TCTTTCATTTTATAATTAGGCATTATAAGCACATTCTCCTCATTATCATAAATGATATTGATGAT
314 TCTTTCATTTAATGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGAT
* *** * ** * *
412189 TTTCTTTTTCTTAGAAATGTTTTCTTTGCCCTATTTTCCTT-AAATTCAAAGTTAATCCCTTAAA
379 TTTCTTTTGCACGGAATTCATTTCTTTGCCCTATTTT-CTTAAAAATCAAAATTAATCCCTTAAA
* * *
412253 TAAGATAAGTATCGATTCTCGTAACAG
443 TAAGACAAGCATCAATTCTCGTAACAG
* * *
412280 TCCCCATTCTTTTCAGGATTGGGAAACTAAAACACATTCCCTTCACTAGGATACATGACATTGAT
1 TCCCCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCAATAGAATACATGACATTGAT
* * * *
412345 GCTTTGGTGTCGCAAGAAAGGCATTTCTTTCCACCGTTTT-TGATAGAATCTAAGTTTGTCTCTT
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAT-AAAGAATCAAAGTTTGTCTCTT
* * * * *** *
412409 AAATAAGACAAACATGAATACTCATAGTATTCCCCATTCATTTCAGGATTAGGTACAATAAACAC
130 AAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAT
* * * * *
412474 AGTCTTC-CTATTAGGATACGCGATATTGATGCTTTGGTTTCGCAAAAAAAGCTTTTTCCCCACC
195 AGTCTTCTC-ATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTTACCCAAC
* * * * * * *
412538 AGTTTT-TGTAAACTCTAAGTTCGTGCCTCATATGAGACAAACATGGATTCTAT-TAATGATCTT
258 AATTTTCT-TAAAGTCGAAGTTCATG-C-CATA--A-ATAAA-ACGGATTCT-TGTAACGATCTT
* * * * *
412601 CTTTCATTTTATGATTAGGCATTATAAGCACATTCTCCTCATTAGGATAAATGATATTTATAAGT
315 CTTTCATTTAATGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * *
412666 TTCTTTTGCATGGAATTCTTTTCTTTGCCCTATTTCTCCTT-AAAATCAAAGTTAATTCCTTAAA
380 TTCTTTTGCACGGAATTCATTTCTTTGCCCTATTT-T-CTTAAAAATCAAAATTAATCCCTTAAA
* * * * * *
412730 GAAAATAAGCATCGATTCTCATAATAG
443 TAAGACAAGCATCAATTCTCGTAACAG
* * * *
412757 TCTCTATTCTTTTTAGGATTGGGAAACTAAAACACATT--C--C------AT---TG--A-TG-T
1 TCCCCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCAATAGAATACATGACATTGAT
412805 --TTTGGTG-CTGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTT
66 GCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTT
* * * * * *
412867 AACTAAGACATTCATGAATACTCATAATAATCCCAACTCTTCTCAGGATTAGGTGTTGTAAACA-
130 AAATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACAT
* * *
412931 AGTCTTCTCATTAAGATACACGATATTGATGCTTTGTTTCACAAGAAAGGCTTTTTACCTAACAA
195 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTACCCAACAA
* * *
412996 TTTTCTTAAAGTCTAAGTTCATGCCATAAATAAGACGGATTCTTGTAACGATCTTCTTTCATTTT
260 TTTTCTTAAAGTCGAAGTTCATGCCATAAATAAAACGGATTCTTGTAACGATCTTCTTTCATTTA
* *
413061 ATGATTTGGCACTATAAGCACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCA
325 ATGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * *
413126 TGGAATTCTTTTCTTTGCCCTATTTTCTTAAAAATCAAAATTCATCCCTTATATAAGACAAGCAT
390 CGGAATTCATTTCTTTGCCCTATTTTCTTAAAAATCAAAATTAATCCCTTAAATAAGACAAGCAT
* *
413191 CGATTCTCTTAACAG
455 CAATTCTCGTAACAG
* *
413206 TCCCCGTTCTTTTCAGGATTAGGAAACT-AAACACATTCCCTTCATTAGAATACATGACATTGAT
1 TCCCCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCAATAGAATACATGACATTGAT
* * *
413270 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCTGTTTT-TGATAGAATCAAAGTTTGTCTCTT
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAT-AAAGAATCAAAGTTTGTCTCTT
* * ***
413334 AAATAAGACAAACATGAATATTCA-AAGTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACA
130 AAATAAGACAATCATGAATACTCATAA-TAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACA
* * * * *
413398 TAGTTTTCTCATTAGGATACACGATAATGATGCTTTGGTTTTGCAAGGAAGGCTTTTT-CCCCAC
194 TAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTTTACCCAAC
* * * *
413462 TAGTTTT-TGTAAAGTCGAGGTTCGTGCC-TCAAATGAGACAAACATGGATT-TTAGTAATGATC
258 -AATTTTCT-TAAAGTCGAAGTTCATGCCAT-AAAT---A-AAAC--GGATTCTT-GTAACGATC
* *
413524 TTC-TTCTATTTAATGATTAGGCATTATAAGCACATTCTCCTCATTAGGGTAAATGATATTGATG
313 TTCTTTC-ATTTAATGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATG
* *
413588 ATTTTCTTTTGCACGGAATTCATTTCTTTGCCCTATTTTCCTT-AAAATCAGAGTTAATCCCTTA
377 ATTTTCTTTTGCACGGAATTCATTTCTTTGCCCTATTTT-CTTAAAAATCAAAATTAATCCCTTA
413652 AATAAGACAAGCATCAATTCTCGTAACAG
441 AATAAGACAAGCATCAATTCTCGTAACAG
* * * * * * * *
413681 TCTCTATTCTTTTCAGGATTGGGAACCTAAAACATATTCTCTTCAATAGGATACTTGAC-TTGAT
1 TCCCCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCAATAGAATACATGACATTGAT
* * *
413745 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCCCCGTTTTATAAAGAATCAAAGTTTGTCTCTGA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTTA
* * * ** * ** *
413810 AATAAAACAATTATGAATGCGGATAATAATCCCCTTTCTTTTTGGGATTACGTATTGTAAACATA
131 AATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACATA
* *
413875 GTCTTCTCATTAGGATACACAATATTGATGTTTTGTTTCGCAAGAAAGGCTTT
196 GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTT
413928 CTTTCCACCG
Statistics
Matches: 1405, Mismatches: 183, Indels: 120
0.82 0.11 0.07
Matches are distributed among these distances:
448 12 0.01
449 66 0.05
450 112 0.08
451 3 0.00
452 2 0.00
454 4 0.00
455 1 0.00
456 42 0.03
457 33 0.02
458 108 0.08
459 1 0.00
460 1 0.00
461 4 0.00
462 1 0.00
463 1 0.00
464 4 0.00
465 1 0.00
466 3 0.00
467 107 0.08
468 39 0.03
469 43 0.03
472 1 0.00
473 6 0.00
474 105 0.07
475 432 0.31
476 177 0.13
477 89 0.06
478 4 0.00
479 1 0.00
480 1 0.00
481 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (469 bp):
TCCCCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTCAATAGAATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTATAAAGAATCAAAGTTTGTCTCTTA
AATAAGACAATCATGAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGTATTGTAAACATA
GTCTTCTCATTAGGATACACGATATTGATGCTTTGTTTCGCAAGAAAGGCTTTTTACCCAACAAT
TTTCTTAAAGTCGAAGTTCATGCCATAAATAAAACGGATTCTTGTAACGATCTTCTTTCATTTAA
TGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
GGAATTCATTTCTTTGCCCTATTTTCTTAAAAATCAAAATTAATCCCTTAAATAAGACAAGCATC
AATTCTCGTAACAG
Found at i:413983 original size:157 final size:157
Alignment explanation
Indices: 413745--414086 Score: 452
Period size: 157 Copynumber: 2.2 Consensus size: 157
413735 TTGACTTGAT
* * * * *
413745 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCCCCGTTTTATAAAGAATCAAAGTTTGTCTCTGA
1 GCTTT-GTTTCACAAGAAAAGC-TTTCTTTCCACCGATTTATAAAGAACCAAAGTTTGTCTCTCA
** * *
413810 AATAAAACAATTATGAATGCGGATAATAATCCCCTTTCTTTT-TGGGATTACGTATTGTAAACAT
64 AATAAAACAAACATGAATACGGATAATAATCCCCATTCTTTTCT-GGATTACGTATTGTAAACAT
* *
413874 AGTCTTCTCATTAGGATACACAATATTGAT
128 AGTCTTCTCATTAGGATACACAATATTAAA
* * *
413904 GTTTTGTTTCGCAAGAAAGGCTTTCTTTCCACCGATTTATAAAGAACCAAAGTTTGTCTCTCAAA
1 GCTTTGTTTCACAAGAAAAGCTTTCTTTCCACCGATTTATAAAGAACCAAAGTTTGTCTCTCAAA
* ** * *
413969 TAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTTCTGGATTACGTATTGTGAACATAGT
66 TAAAACAAACATGAATACGGATAATAATCCCCATTCTTTTCTGGATTACGTATTGTAAACATAGT
* *
414034 CTTTTCATTAGGATACACGATATTAAA
131 CTTCTCATTAGGATACACAATATTAAA
*
414061 GCTTTGTTTCACAAGAAATGCTTTCT
1 GCTTTGTTTCACAAGAAAAGCTTTCT
414087 CCCTACCAAT
Statistics
Matches: 158, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
157 140 0.89
158 14 0.09
159 4 0.03
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (157 bp):
GCTTTGTTTCACAAGAAAAGCTTTCTTTCCACCGATTTATAAAGAACCAAAGTTTGTCTCTCAAA
TAAAACAAACATGAATACGGATAATAATCCCCATTCTTTTCTGGATTACGTATTGTAAACATAGT
CTTCTCATTAGGATACACAATATTAAA
Found at i:414123 original size:157 final size:157
Alignment explanation
Indices: 413745--414138 Score: 409
Period size: 157 Copynumber: 2.5 Consensus size: 157
413735 TTGACTTGAT
* * ** * * *
413745 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCC-CCGTTTTATAAAGAATCAAAGTTTGTCTCTG
1 GCTTT-GTTTCACAAGAAAGGC-TTTC-TTCCCACCAATTTATAAAGAACCAAAGTTCGTCTCTC
* ** * ** * *
413809 AAATAAAACAATTATGAATGCGGATAATAATCCCCTTTCTTTTTGGGATTACGTATTGTAAACAT
63 AAATAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTTTGGGATTACGTATTGTAAACAT
* *
413874 AGTCTTCTCATTAGGATACACAATATTGAT
128 AGTCTTCTCATTAGGATACACAATATTAAA
* * * * *
413904 GTTTTGTTTCGCAAGAAAGGCTTTCTTTCCACCGATTTATAAAGAACCAAAGTTTGTCTCTCAAA
1 GCTTTGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTATAAAGAACCAAAGTTCGTCTCTCAAA
*
413969 TAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTTCT-GGATTACGTATTGTGAACATAG
66 TAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTT-TGGGATTACGTATTGTAAACATAG
* *
414033 TCTTTTCATTAGGATACACGATATTAAA
130 TCTTCTCATTAGGATACACAATATTAAA
* * ** ** *
414061 GCTTTGTTTCACAAGAAATGCTTTC-TCCCTACCAATTTTTGCA-AATTATAAGTTCGTGTCTCA
1 GCTTTGTTTCACAAGAAAGGCTTTCTTCCC-ACCAATTTATAAAGAACCA-AAGTTCGTCTCTCA
*
414124 AATAAGATAAACATG
64 AATAAGACAAACATG
414139 GACTGTATTA
Statistics
Matches: 197, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
156 10 0.05
157 169 0.86
158 14 0.07
159 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
GCTTTGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTATAAAGAACCAAAGTTCGTCTCTCAAA
TAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTTTGGGATTACGTATTGTAAACATAGT
CTTCTCATTAGGATACACAATATTAAA
Found at i:414514 original size:630 final size:633
Alignment explanation
Indices: 413264--414562 Score: 1616
Period size: 630 Copynumber: 2.1 Consensus size: 633
413254 AATACATGAC
* * * * * * * *
413264 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGATTTGGTTTCGCAAGAAAGGC-TTTCTTTCCACCGTTTATGAAAGAACCAAAGTTTGT
* *
413329 CTCTTAAATAAGACAAACATGAATATTCAAAGTAATCCCCATTCTTTTCAGGATTAGGTACCATA
65 CTCTCAAATAAGACAAACATGAATATTCAAAGTAATCCCCATTCTTTTCAGGATTACGTACCATA
* * ** * *
413394 AACATAGTTTTCTCATTAGGATACACGATAATGATGCTTTGGTTTTGCAAGGAAGGCTTTTTCCC
130 AACATAGTTTTCTCATTAGGATACACGATAATAAAGCTTTGGTTTCACAAGAAAGGCTTTCTCCC
* * * * * * * *
413459 CACTAGTTTTTGTAAAGTCGAGGTTCGTGCCTCAAATGAGACAAACATGGATTTTAGTAATGATC
195 CACCAATTTTTGCAAAGTAGAAGTTCGTGCCTCAAATAAGACAAACATGGACTGTAGTAATGATC
**
413524 TTCTTCTATTTAATGATTAGGCATTATAAGCACATTCTCCTCATTAGGGTAAATGATATTGATGA
260 TTCTTCTATTTAATGATTAGGCATTATAAGCACATTCTCCTCATTAGCATAAATGATATTGATGA
* * *
413589 TTTTCTTTTGCACGGAATTCATTTCTTTGCCCTATTTTCCTTAAAATCAGAGTTAATCCCTTAAA
325 TTTTCATTTGCACGGAATTCATTGCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAA
* * *
413654 TAAGACAAGCATCAATTCTCGTAACAGTCTCTATTCTTTTCAGGATTGGGAACCTAAAACATATT
390 TAAGACAAGCATCAATTCTCGTAACAGTCTCTATTCTTTTCAGGATTAGGAAACTAAAACACATT
* * *
413719 CTCTTCAATAGGATACTTGACTTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCCCCGTTT
455 CCCTTCAATAGGATACTTGACTTGATGCTTTGGTGACACAAGAAAAGCTTTTCTTTCCACCGTTT
* ** * *
413784 TATAAAGAATCAAAGTTTGTCTCTGAAATAAAACAATTATGAATGCGGATAATAATCCCCTTTCT
520 TATAAAGAATCAAAGTTTGTCTCTAAAATAAAACAAACATGAATACGCATAATAATCCCCTTTCT
*** ***
413849 TTTTGGGATTACGTATTGTAAACATAGTCTTCTCATTAGGATACACAAT
585 TTTCAAGATTACGTACCCTAAACATAGTCTTCTCATTAGGATACACAAT
*
413898 ATTGATG-TTTTGTTTCGCAAGAAAGGCTTTCTTTCCACCGATTTAT-AAAGAACCAAAGTTTGT
1 ATTGATGATTTGGTTTCGCAAGAAAGGCTTTCTTTCCACCG-TTTATGAAAGAACCAAAGTTTGT
* * ***
413961 CTCTCAAATAAGACAAACATGAATACTT-ATAGTAATCCCCATTCTTTTCTGGATTACGTATTGT
65 CTCTCAAATAAGACAAACATGAATA-TTCAAAGTAATCCCCATTCTTTTCAGGATTACGTACCAT
* * *
414025 GAACATAGTCTTT-TCATTAGGATACACGATATTAAAGCTTT-GTTTCACAAGAAATGCTTTCTC
129 AAACATAGT-TTTCTCATTAGGATACACGATAATAAAGCTTTGGTTTCACAAGAAAGGCTTTCTC
* * * * * *
414088 CCTACCAATTTTTGCAAATTATAAGTTCGTGTCTCAAATAAGATAAACATGGACTGTATTAATGA
193 CCCACCAATTTTTGCAAAGTAGAAGTTCGTGCCTCAAATAAGACAAACATGGACTGTAGTAATGA
* *
414153 TCTTCTT-TCATTTTATGATTAGGCATTATAAGCACATTCTCCTTATTAGCATAAATGATATTGA
258 TCTTCTTCT-ATTTAATGATTAGGCATTATAAGCACATTCTCCTCATTAGCATAAATGATATTGA
* * *
414217 TGATTTT-ATTTGCATGGAATTC-TTCGCTTTGCCCTATTTTCCTTAAATTCAAAGTTCATCCCT
322 TGATTTTCATTTGCACGGAATTCATT-GCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCT
* * *
414280 TAAATAAGAGAAGCATCGATTCTCGTAACAGTCTCTATTTTTTTCAGGATTAGGAAACTAAAACA
386 TAAATAAGACAAGCATCAATTCTCGTAACAGTCTCTATTCTTTTCAGGATTAGGAAACTAAAACA
* * * * *
414345 CCTTCCCTTCATTAGGATACTTGACATTGATGCTTTGG-GACGCAAGAAAAGTTTTTCTTTCCAT
451 CATTCCCTTCAATAGGATACTTGAC-TTGATGCTTTGGTGACACAAGAAAAGCTTTTCTTTCCAC
* * * * * * *
414409 TGTTTT-TGATAGAATCAAAGTTTGTTTCTAAAATCACACAAACATGAATACTCATAGTAAT-CC
515 CGTTTTAT-AAAGAATCAAAGTTTGTCTCTAAAATAAAACAAACATGAATACGCATAATAATCCC
* * * * **
414472 CTATTCTTTTCAAGTTTAGGTACCCTAAATATAGTTTTCTCATTAGGATACATGAT
579 CT-TTCTTTTCAAGATTACGTACCCTAAACATAGTCTTCTCATTAGGATACACAAT
* * *
414528 ATTAATGATTTGGTTTTGCGAGAAAGG-TTT-TTTCC
1 ATTGATGATTTGGTTTCGCAAGAAAGGCTTTCTTTCC
414563 CCACTAGTTT
Statistics
Matches: 566, Mismatches: 90, Indels: 23
0.83 0.13 0.03
Matches are distributed among these distances:
629 12 0.02
630 247 0.44
631 161 0.28
632 113 0.20
633 26 0.05
634 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (633 bp):
ATTGATGATTTGGTTTCGCAAGAAAGGCTTTCTTTCCACCGTTTATGAAAGAACCAAAGTTTGTC
TCTCAAATAAGACAAACATGAATATTCAAAGTAATCCCCATTCTTTTCAGGATTACGTACCATAA
ACATAGTTTTCTCATTAGGATACACGATAATAAAGCTTTGGTTTCACAAGAAAGGCTTTCTCCCC
ACCAATTTTTGCAAAGTAGAAGTTCGTGCCTCAAATAAGACAAACATGGACTGTAGTAATGATCT
TCTTCTATTTAATGATTAGGCATTATAAGCACATTCTCCTCATTAGCATAAATGATATTGATGAT
TTTCATTTGCACGGAATTCATTGCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAT
AAGACAAGCATCAATTCTCGTAACAGTCTCTATTCTTTTCAGGATTAGGAAACTAAAACACATTC
CCTTCAATAGGATACTTGACTTGATGCTTTGGTGACACAAGAAAAGCTTTTCTTTCCACCGTTTT
ATAAAGAATCAAAGTTTGTCTCTAAAATAAAACAAACATGAATACGCATAATAATCCCCTTTCTT
TTCAAGATTACGTACCCTAAACATAGTCTTCTCATTAGGATACACAAT
Found at i:415103 original size:158 final size:156
Alignment explanation
Indices: 414830--415193 Score: 395
Period size: 158 Copynumber: 2.3 Consensus size: 156
414820 CATTCCTTTA
* * * * * *
414830 ATTAGGATACATTACATTAATGTTTTGGTGTCGCAAAAAAGGCATTTTTTTCCACCATTTTTTAA
1 ATTAGGATACATGATATTGATGTTTT-GT-TTGCAAGAAAGGC-TTTTTTTCCACCATTTTGTAA
* * * ** * *
414895 AGAATCAAAGTTTGTCTCTTATGTTAGACAAACATGAATACTCATAGTAATCCCCATTCTTTTCA
63 AGAAGCAAAGTTTCTCTCTCAAATAAGACAAACATGAATACCCATAGTAATCCCCATTCTTTTCA
* * *
414960 AGATTAGGTGCCATAAACATAGTCTTCTT
128 AGATTAGGTACCATAAACATAGTATTCTC
* ** *
414989 ATTAGGCTACATGATATTGATGTTTTAGTTTGCAAGAAAGGCTTTTCTTTCCACTGTTTTGTAAT
1 ATTAGGATACATGATATTGATGTTTT-GTTTGCAAGAAAGGCTTTT-TTTCCACCATTTTGTAAA
* * **
415054 GAAGCAAAGTTTCTCTCTCAAATAAGACGAACATGACTACCCATAGTAATCCCCATTCTTTTCTT
64 GAAGCAAAGTTTCTCTCTCAAATAAGACAAACATGAATACCCATAGTAATCCCCATTCTTTTCAA
***
415119 GATTAGGTATTGTAAACATAGTATTCTC
129 GATTAGGTACCATAAACATAGTATTCTC
* ** *
415147 ATTAGGATACACGATATTGATACTTTGTTTTGCAAGAAAAGCTTTTT
1 ATTAGGATACATGATATTGATGTTTTG-TTTGCAAGAAAGGCTTTTT
415194 CCCTACCAAT
Statistics
Matches: 170, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 6 0.04
158 140 0.82
159 24 0.14
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (156 bp):
ATTAGGATACATGATATTGATGTTTTGTTTGCAAGAAAGGCTTTTTTTCCACCATTTTGTAAAGA
AGCAAAGTTTCTCTCTCAAATAAGACAAACATGAATACCCATAGTAATCCCCATTCTTTTCAAGA
TTAGGTACCATAAACATAGTATTCTC
Found at i:415167 original size:476 final size:472
Alignment explanation
Indices: 413925--415034 Score: 1194
Period size: 475 Copynumber: 2.3 Consensus size: 472
413915 CAAGAAAGGC
* * * * * *
413925 TTTCTTTCCACCGATTTAT-AAAGAACCAAAGTTTGTCTCTCAAATAAGACAAACATGAATACTT
1 TTTCTTTCCACC-ATTTTTGAAAGAATCAAAGTTTGTCTCTAAAATCACACAAACATGAATACTC
** * *** * * *
413989 ATAGTAATCCCCATTCTTTTCTGGATTACGTATTGTGAACATAGTCTTTTCATTAGGATACACGA
65 ATAGTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACATGA
* * ** * * * * * * * * * *
414054 TATTAAAGCTTT-GTTTCACAAGAAATGCTTTCTCCCTACCAATTTTTGCAAATTATAAGTTCGT
130 TATTAATGATTTAGTTTTGCAAGAAAGGTTTTTTCCCCACTAGTTTTTGTAAAGTCTAAATTCGT
* * * * * ** * *
414118 GTCTCAAATAAGATAAACATGGA-CTGTATTAATGATCTTCTTTCATTTTATGATTAGGCATTAT
195 GCCTCAAATAAGACAGACATGGATC-CTAGTAA-GATCCCCATTCATTTTGTGATTAGGCATTAT
* * * * * *
414182 AAGCACATTCTCCTTATTAGCATAAATGATATTGATGATTTTATTTGCATGGAATTCTTCGCTTT
258 AAG-ACATTATCCTCATTAGGATAAACGATATTGATGATTTTTTTTGCATGGAAATCTTCGCTTT
* * *
414247 GCCCTATTTTCCTTAAATTCAAAGTTCATCCCTTAAATAAGAGAAGCATCGATTCTCGTAACAGT
322 GCCCTATTTTCCTTAAATTCAAAGTTAATCCCTTAAATAAAACAAGCATCGATTCTCGTAACAGT
* * * * *
414312 CTCTATTTTTTTCAGGATTAGGAAACTAAAACACCTTCCCTTCATTAGGATACTTGACATTGATG
387 CTCCATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTAATTAGGATACTTGACATTAATG
*
414377 CTTTGGGACGCAAGAAAAGTT
452 CTTTGGGACGCAAGAAAAGAT
*** * *
414398 TTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTTTCTAAAATCACACAAACATGAATACTCA
1 TTTCTTTCCACCATTTTTGAAAGAATCAAAGTTTGTCTCTAAAATCACACAAACATGAATACTCA
* * * * *
414463 TAGTAATCCCTATTCTTTTCAAGTTTAGGTACCCTAAATATAGTTTTCTCATTAGGATACATGAT
66 TAGTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACATGAT
* *
414528 ATTAATGATTTGGTTTTGCGAGAAAGGTTTTTTCCCCACTAGTTTTTGTAAAGTCTAAATTCGTG
131 ATTAATGATTTAGTTTTGCAAGAAAGGTTTTTTCCCCACTAGTTTTTGTAAAGTCTAAATTCGTG
* * ** * *
414593 CCTCAAATGAGACAGACATGGATTCTAGTAAAGATCTTCTTTCATTTTGTGATTAGGCGTTATAA
196 CCTCAAATAAGACAGACATGGATCCTAGT-AAGATCCCCATTCATTTTGTGATTAGGCATTATAA
* * * **
414658 GTACATTCTCCTGATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTG
260 G-ACATTATCCTCATTAGGATAAACGATATTGATGA-TTTTTTTTGCATGGAAATCTTCGCTTTG
* * *
414723 CTCTATTTTCCTTAAAATT-AAAGTTAATCCCTTAAATAAAACAAGCATCGATTCTCTTAACGGT
323 CCCTATTTTCCTT-AAATTCAAAGTTAATCCCTTAAATAAAACAAGCATCGATTCTCGTAACAGT
*
414787 CTCCATTCTTTTCAGGATTAGG-AACGTAAAACACATTCCTTTAATTAGGATACATT-ACATTAA
387 CTCCATTCTTTTCAGGATTAGGAAAC-TAAAACACATTCCCTTAATTAGGATAC-TTGACATTAA
* *
414850 TGTTTTGGTGTCGCAA-AAAAGGCAT
450 TGCTTTGG-GACGCAAGAAAA-G-AT
* * ** * *
414875 TTT-TTTCCACCATTTTTTAAAGAATCAAAGTTTGTCTCTTATGTTAGACAAACATGAATACTCA
1 TTTCTTTCCACCATTTTTGAAAGAATCAAAGTTTGTCTCTAAAATCACACAAACATGAATACTCA
* * *
414939 TAGTAATCCCCATTCTTTTCAAGATTAGGTGCCATAAACATAGTCTTCTTATTAGGCTACATGAT
66 TAGTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * *
415004 ATTGATGTTTTAG-TTTGCAAGAAAGGCTTTT
131 ATTAATGATTTAGTTTTGCAAGAAAGGTTTTT
415035 CTTTCCACTG
Statistics
Matches: 532, Mismatches: 94, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
472 4 0.01
473 110 0.21
474 128 0.24
475 155 0.29
476 131 0.25
477 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (472 bp):
TTTCTTTCCACCATTTTTGAAAGAATCAAAGTTTGTCTCTAAAATCACACAAACATGAATACTCA
TAGTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACATGAT
ATTAATGATTTAGTTTTGCAAGAAAGGTTTTTTCCCCACTAGTTTTTGTAAAGTCTAAATTCGTG
CCTCAAATAAGACAGACATGGATCCTAGTAAGATCCCCATTCATTTTGTGATTAGGCATTATAAG
ACATTATCCTCATTAGGATAAACGATATTGATGATTTTTTTTGCATGGAAATCTTCGCTTTGCCC
TATTTTCCTTAAATTCAAAGTTAATCCCTTAAATAAAACAAGCATCGATTCTCGTAACAGTCTCC
ATTCTTTTCAGGATTAGGAAACTAAAACACATTCCCTTAATTAGGATACTTGACATTAATGCTTT
GGGACGCAAGAAAAGAT
Found at i:415950 original size:476 final size:467
Alignment explanation
Indices: 415021--416083 Score: 1355
Period size: 476 Copynumber: 2.3 Consensus size: 467
415011 TTTTAGTTTG
* * * * *
415021 CAAGAAAGGCTTTTCTTTCCACTGTTTTGTAAT-GAAGCAAAGTTTCTCTCTCAAATAAGACGAA
1 CAAGAAAGGCTTTTCTTTCCACCGTTTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AA
* * ** ***
415085 CATGACTACCCATAGTAATCCCCATTCTTTTCTTGATTAGGTATTGTAAACATAGTATTCTCATT
64 CATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTATTCTCATT
* * * *
415150 AGGATACACGATATTGATACTTTGTTTTGCAAGAAAAGCTTTTTCCCTACCAATTTTTGTAAAGT
129 AGGACACACGATATTGATACTTTGGTTTGCAAAAAAAGCTTTTTCCCTACCAATTTTTATAAAGT
* * * * **
415215 CTAATTTGTGCCTCAAATGATACAAAAATGGATTCTTGTAATGATCTTCTTTCATTTTATGACTA
194 CTAATTCGTGCCTCAAATAAGACAAAAATGGATTCTAGTAAAAATCTTCTTTCATTTTATGACTA
* * * *
415280 GGCACTATAAGCTCCTCGTTAGGATAAATGATATTGAAAATTTTCATTTGCGTGAAATTCTTTTC
259 GGCACTATAAGCTCCTCATTAGGATAAAAGATATTGAAAATTTTCATTTCCATGAAATTCTTTTC
* *
415345 TTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGATAAGCATCGATTCTCATAAC
324 TTTGCCCTATTTTCCTTAAAATCAAAGTTAACCCCTTAAATAAGACAAGCATCGATTCTCATAAC
* * * * *
415410 AGTCTCCACTCTTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAGGATACAAGACATTG
389 AGTCCCCACTCTTTTCAGGATTGGGAAACTAAAACACATTTCCTTCAATAAGATACAAGACATTG
415475 ATGCTTTGGTGTCA
454 ATGCTTTGGTGTCA
* * * *
415489 C-ATAAAGGCTTTTCCTTCCCCCGTTTTTGATAGAATCAAAGGTTGTCTCTTAAATAAGACAAAC
1 CAAGAAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AAC
* * *
415553 ATTAATACTCACAGTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTCATTA
65 ATGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTATTCTCATTA
* * * *
415618 GGACACATGATATTGGTGCTTTGGTTTG-ATAAAAAAGGTTTTTTCTCC-ACCAATTTTTATAAA
130 GGACACACGATATTGATACTTTGGTTTGCA-AAAAAA-GCTTTTTC-CCTACCAATTTTTATAAA
* *
415681 GTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAAAAATTTTCTTTCATTTTATG-
192 GTCTAA-TTCGTGCCTCAAATAAGACAAAAATGGATTCTAGTAAAAATCTTCTTTCATTTTATGA
* ** * *
415745 CTTAGGCATTATAAGCACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCCATGG
256 C-TAGGCACTATAAG------CTCCTCATTAGGATAAAAGATATTGAAAATTTTCATTTCCATGA
** *
415810 AATTCTTTTCTTTGCCCTATTCTTCCTTAAAATCAAAGTTAATTCGTTAAATAAGACAAGCATCG
314 AATTCTTTTCTTTGCCCTATT-TTCCTTAAAATCAAAGTTAACCCCTTAAATAAGACAAGCATCG
* * * *
415875 ATTCTCGTAGCAGTCCCCATTCTTTTCATGATTGGGAAACTAAAACACA-TTCGCTTCAATAAGA
378 ATTCTCATAACAGTCCCCACTCTTTTCAGGATTGGGAAACTAAAACACATTTC-CTTCAATAAGA
*
415939 TACATGACATTGATGCTTTGGTGTCA
442 TACAAGACATTGATGCTTTGGTGTCA
* * *
415965 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAGTAAGACAACA
1 CAAGAAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAACA
* * *
416030 TGAATACTCATAGTAATCTCTATTCTTTTCAGGATTAGGCACCATAAACATAGT
66 TGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGT
416084 GAAAGCTCAA
Statistics
Matches: 508, Mismatches: 72, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
466 4 0.01
467 132 0.26
468 29 0.06
469 63 0.12
475 60 0.12
476 168 0.33
477 52 0.10
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (467 bp):
CAAGAAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAACA
TGAATACTCATAGTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTATTCTCATTAG
GACACACGATATTGATACTTTGGTTTGCAAAAAAAGCTTTTTCCCTACCAATTTTTATAAAGTCT
AATTCGTGCCTCAAATAAGACAAAAATGGATTCTAGTAAAAATCTTCTTTCATTTTATGACTAGG
CACTATAAGCTCCTCATTAGGATAAAAGATATTGAAAATTTTCATTTCCATGAAATTCTTTTCTT
TGCCCTATTTTCCTTAAAATCAAAGTTAACCCCTTAAATAAGACAAGCATCGATTCTCATAACAG
TCCCCACTCTTTTCAGGATTGGGAAACTAAAACACATTTCCTTCAATAAGATACAAGACATTGAT
GCTTTGGTGTCA
Found at i:417455 original size:23 final size:23
Alignment explanation
Indices: 417406--417456 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
417396 GAGTGAAATG
* * * *
417406 AAGTGCTTATTCATGTGCTGTGG
1 AAGTGCTCATTCATGTGCCGCGA
417429 AAGTGCTCATTCATGTGCCGCGA
1 AAGTGCTCATTCATGTGCCGCGA
417452 AAGTG
1 AAGTG
417457 AAGTGATCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (23 bp):
AAGTGCTCATTCATGTGCCGCGA
Found at i:418960 original size:13 final size:13
Alignment explanation
Indices: 418937--418976 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
418927 ATAGTAACCC
418937 ATGTATCGATACA
1 ATGTATCGATACA
* *
418950 TTGTATTGATACA
1 ATGTATCGATACA
418963 ATGTATCGATACA
1 ATGTATCGATACA
418976 A
1 A
418977 AGAACATTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:418990 original size:15 final size:15
Alignment explanation
Indices: 418970--419000 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
418960 ACAATGTATC
418970 GATACAAAGAACATT
1 GATACAAAGAACATT
418985 GATACAAAGAACATT
1 GATACAAAGAACATT
419000 G
1 G
419001 CATCGATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (15 bp):
GATACAAAGAACATT
Found at i:419010 original size:20 final size:17
Alignment explanation
Indices: 418966--418998 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
418956 TGATACAATG
418966 TATCGATACAAAGAACA
1 TATCGATACAAAGAACA
418983 T-T-GATACAAAGAACA
1 TATCGATACAAAGAACA
418998 T
1 T
418999 TGCATCGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.88
16 1 0.06
17 1 0.06
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
TATCGATACAAAGAACA
Found at i:425069 original size:476 final size:475
Alignment explanation
Indices: 423760--433378 Score: 11103
Period size: 476 Copynumber: 20.3 Consensus size: 475
423750 CGATGTCGGT
* * * ** * * * * * *
423760 AAGACCATATTTATGGTACCTAATCCCGATAAGAAAGGAGATTTGTATGACTATTTATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * *
423825 TTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATGAAAAGAAAAGCTTTTCTTGTGACACC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* ** **
423890 AAAGCATGAATGTCGTGTATCCTAATGAATAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
131 AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* ** * * *
423955 -GAGGACTATTACAAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAATT
196 GGA-GACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
** *
424019 AACGCAAAGAAAAGATTTCCATGCAAAA-AGAAATCATCAATATCATTTATCTTAATGAGGAGAA
260 AGGGCAAAGAAAAGATTTCCATGCAAAAGA-AAATCATCAATATCATTTATCCTAATGAGGAGAA
** * * *
424083 CATGTTTATATTGCTTAATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGTCTCATT
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATT
* * *
424148 TGAGGCACGAACTTAGACTTTACAAAATTTGGTAGGAAAAAAGCCTTTCTTAAGAAACCAAAGCA
389 TGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGCA
424213 -CTAATATCGTGTATCCTAATGAG
453 TC-AATATCGTGTATCCTAATGAG
* * * *
424236 ACGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATAGGGAATAGTATGAGTATTCATGTTTGT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * *
424300 CTTATTTAAGAGACAAACTTTAAGTCAATCAAAAATGGTGGAAAG-AAAGCTTTTCTCGCGGCAC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * * * * * *
424364 CAAAGCATCTATGTCATGTATCCTAGTGAAGAGAATGTGTTTTAGGTTCTCAATCCTGTAAACAA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* ** * * *
424429 TGGAGATTGTTACAAGAATTGATGCTTATCTTATTAAAGGGATGAACTTTGATTTTAAGTAAAAT
195 TGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * * * *
424494 AGGGCAAAGAAAAAATTTCCACGTAAAAGAAAATCATCAATAGCATTTATCCTAATAAGGAGAAT
260 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * * *
424559 TTGTTTATAGTGCGTAATCATAAAATGAATGAAGATTAATACAAGAATCCTTGTTTGGCTCATTT
325 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTT
* * **
424624 GAGGCACAAGATTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTCTTGTGAAACCAAAGCAT
390 GAGGCACAA-CTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGCAT
*
424689 CAATATCGTGTATCCTAATGAA
454 CAATATCGTGTATCCTAATGAG
* ** * *
424711 AAGACTATGTCTATGGTAACTAATCCATAAGAGAATGGGGATTACTATGAGTATTCATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
*
424776 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCGACACC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * ** * * *
424841 AAAGCATTAATATCTTGTATCCTAATGAAGGGAATGAGTTTTTGGTTCCCAATCCTAAAAAGAAT
131 AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * * * * *
424906 GGAGATTGTTATGAGAATAGTTGCTTATCTTATTTAAGGGATGAACTTTGATTTTGAGAAAAATA
196 GGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * * * *
424971 GGGCAAACAAAAGGTTTCCACGTAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAAAATG
261 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * ** * *
425036 TTTTTATAGTGCGTAATCATGAAATGAATGAAGATCATTACCAGAATCCTTGTTTGGCTCATTTG
326 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTG
* * ** *
425101 AGGCACGAACTTAGACTTTATAAAAATTGGT-GGGAAAAAAGCCTTTCTTAAGGGACCAAAGCAC
391 AGGCAC-AACTTAGACTTTACAAAAATTGGTAGGG-AAAAAGCCTTTCTTACGAAACCAAAGCAT
*
425165 CAATATTGTGTATCCTAATGAG
454 CAATATCGTGTATCCTAATGAG
* * * ** * *
425187 AAGACTAAGTTTATGGTGACT-AT-TAGTGAAAAGAATGGGGAAGAGTCTGTGTATTCATGTTTG
1 AAGACTATGTTTATGGTGCCTAATCCA-T-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* *
425250 TCTTA-TTAAGAGACAAATTTTGATTCTATGAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
64 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
425314 CCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCTAATCTGGAAAAGA
129 CCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * *
425379 ATGGAGACTATTATGAGAATCGATTCTTATCTT-TTTAAGGGATGAACTTTGATTTTAAGAAAAA
194 ATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
425443 TGGGGCAAAGAAAGGATTTTCC-CG-AAAAGAAAATCATCAATATCATTTGTCCTAATGGGGAGA
259 TAGGGCAAAGAAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
425506 ATGTGTTTATATTGCGTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTTTTTAG-CTTA
323 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTT-GTCTCA
* * * * * *
425570 TTTGAGGAATTAACTTAGACTTTATAAAAATTGG-GGGGAAAAAGCCTTTCTTAAGAAAACAAAG
387 TTTGAGGCA-CAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAG
* *
425634 CACCAATATCGTGTATCCTGATGAG
451 CATCAATATCGTGTATCCTAATGAG
* * * *
425659 AAGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATTGGGAATAGTATAAGTATTCATGTTTGT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * ** *
425723 CTTATTTAAGACACGAACTTTGATTCTATCAAAAATGATGGATAGAAAA-AATTTCTAGCGACAC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* *
425787 CAAAGCATCAATGTCAAGTATCCTAATG-ACGGAAAGTGTTTTTGGTTCCCAATAC-TGAAAAGA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT-CTTGAAAAGA
* * * * *
425850 ATGGCGACTGTAATGAGAATTGATGCATGTCTTATTTAATGGATGAACTTTGATTTTAAGCAAAA
194 ATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * *
425915 TCGGGCAAAGAAAATATTTCCATGCAAAAGGAAATCATCAATATCATTTATCCTAAAGAGGAGAA
259 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
425980 TGT-TCTTATAGTGCCTAATCACAGAATGAATCAAGATCGTTACTA-AAGTCCTTGTTTGTCTCA
324 TGTGT-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCTTGTTTGTCTCA
* * * ** *
426043 TTTGAGGCACAAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACCTTTCTCGCAAAACCAAAG
387 TTTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAG
426108 CATCAATATCGTGTATCCTAATGAG
451 CATCAATATCGTGTATCCTAATGAG
* * * *
426133 AAAACTATGTTTATGGCT-CCTAATCCATAAAAGAGTGGAGATTACTATGAGTATTCATGTTTGT
1 AAGACTATGTTTATGG-TGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
426197 CTTACTTAAGAGACAAACTTTGACTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTTGCGAC-
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TTGCGACA
** * ** * * *
426261 CCTAAAGCATCAATGTCTTGTATCCTATTGAAGAAAATGTATTTTAGGTTCCCAATCTTGAAACG
129 CC-AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
426326 AAT-GAAACCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGAAGAACTTTGACTTTAAGTAA
193 AATGGAGA-CTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * * *
426390 AATAGGGCATAGAAAAGATTTTCACGCAAAAGAATATAATCAATATCATTTATCCTAATGAGGAG
257 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * *
426455 AATGTTTTTATATTGCGTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTTTTTAG-CTT
322 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTT-GTCTC
* * * * * *
426519 ATTTGAGGAATTAACTTAGACTTTATAAAAATTGG-GGGGAAAAAGCCTTTCTTAAGAAAACAAA
386 ATTTGAGGCA-CAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAA
* *
426583 GCACCAATATCGTGTATCCTGATGAG
450 GCATCAATATCGTGTATCCTAATGAG
* * * *
426609 AAGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATTGGGAATAGTATAAGTATTCATGTTTGT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * ** *
426673 CTTATTTAAGACACGAACTTTGATTCTATCAAAAATGATGGATAGAAAA-AATTTCTAGCGACAC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* *
426737 CAAAGCATCAATGTCAAGTATCCTAATG-ACGGAAAGTGTTTTTGGTTCCCAATAC-TGAAAAGA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT-CTTGAAAAGA
* * * * *
426800 ATGGCGACTGTAATGAGAATTGATGCATGTCTTATTTAATGGATGAACTTTGATTTTAAGCAAAA
194 ATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * *
426865 TCA-GGCAAAGAAAATATTTCCATGCAAAAGGAAATCATCAATATCATTTATCCTAAAGAGGAGA
259 T-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
426929 ATGT-TCTTATAGTGCCTAATCACAGAATGAATCAAGATCGTTACTA-AAGTCCTTGTTTGTCTC
323 ATGTGT-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCTTGTTTGTCTC
* * * ** *
426992 ATTTGAGGCACAAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACCTTTCTCGCAAAACCAAA
386 ATTTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAA
427057 GCATCAATATCGTGTATCCTAATGAG
450 GCATCAATATCGTGTATCCTAATGAG
* * *
427083 AAAACTATGTTTATGGCT-CCTAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGT
1 AAGACTATGTTTATGG-TGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
427147 CTTACTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-C
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
** * * * * *
427211 CTAAAGCATCAATGTCTTGTATCCTATTGAAGGAAATGTATTTTAGGTTCCCAATCTTGAAACGA
130 C-AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * * * * *
427276 A-AGAAACCTGTTATGTGAATCGATGCTTGTTTTATTTAAGGGAAGAACTTTGACTTTAAGTAAA
194 ATGGAGA-CTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * * * *
427340 ATAGGGCATAGAAAAGATTTTCACGCAAAAGAATATAATCAATATCATTTATCCTAATGAGGAGA
258 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
427405 ATGTTTTTATATTGCGTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTTTTTAG-CTTA
323 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTT-GTCTCA
* * * * * *
427469 TTTGAGGAATTAACTTAGACTTTATAAAAATTGG-GGGGAAAAAGCCTTTCTTAAGAAAACAAAG
387 TTTGAGGCA-CAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAG
* *
427533 CACCAATATCGTGTATCCTGATGAG
451 CATCAATATCGTGTATCCTAATGAG
* * * *
427558 AAGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATTGGGAATAGTATAAGTATTCATGTTTGT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * ** *
427622 CTTATTTAAGACACGAACTTTGATTCTATCAAAAATGATGGATAGAAAA-AATTTCTAGCGACAC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* *
427686 CAAAGCATCAATGTCAAGTATCCTAATG-ACGGAAAGTGTTTTTGGTTCCCAATAC-TGAAAAGA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT-CTTGAAAAGA
* * * * *
427749 ATGGCGACTGTAATGAGAATTGATGCATGTCTTATTTAATGGATGAACTTTGATTTTAAGCAAAA
194 ATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * *
427814 TCGGGCAAAGAAAATATTTCCATGCAAAAGGAAATCATCAATATCATTTATCCTAAAGAGGAGAA
259 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
427879 TGT-TCTTATAGTGCCTAATCACAGAATGAATCAAGATCGTTACTA-AAGTCCTTGTTTGTCTCA
324 TGTGT-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCTTGTTTGTCTCA
* * * ** *
427942 TTTGAGGCACAAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACCTTTCTCGCAAAACCAAAG
387 TTTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAG
428007 CATCAATATCGTGTATCCTAATGAG
451 CATCAATATCGTGTATCCTAATGAG
* ** * *
428032 AAAACTATGTTTATGGCCCCTAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
428097 TTACTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-CC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
** * * * * *
428161 TAAAGCATCAATGTCTTGTATCCTATTGAAGGAAATGTATTTTAGGTTCCCAATCTTGAAACGAA
131 -AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * *
428226 T-GAAACCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGAAGAACTTTGACTTTAAGTAAAA
195 TGGAGA-CTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
428290 TAGGGCATAGAAAAGATTTTCACGCAAAAGAATATAATCAATATCATTTATCCTAATGAGGAGAA
259 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * ** *
428355 TGTTTTTATATTGCGTAATCACAAAATGAATGAAGATCAACACTAGAATCCTTGTTTGGCTCATT
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATT
* * *
428420 TGAGGCACGAACTTAGACTATACAAAAATTGGT-GAGAAAAAAGCCTTTCTTATGAAACCAAAGC
389 TGAGGCAC-AACTTAGACTTTACAAAAATTGGTAG-GGAAAAAGCCTTTCTTACGAAACCAAAGC
*
428484 ACCAATATCGTGTATCCTAATGAG
452 ATCAATATCGTGTATCCTAATGAG
* * ** * * * *
428508 AATACTAAGTTTATGGTGCCTAAT-TGTGAAAAGAATAGGGAATAGTATGAGTATTCATATTTAT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
** * * * *
428572 CTTATTTAAGAGATTAACTTTGATTCTATCGAAAATGGTGGAAAGAAATGCTTTTCTAGTGACAC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* **
428637 CAAAGCATCAATGTCAAGTATCCCAATGAAGAAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * *
428702 TGGAGACTGTTACGAGAATCGTTGCTTGTCTT-TTTAGGGGATGAACTTTGATTTTAAGGAAAAT
195 TGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * *
428766 AGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCACCAATATCATTTATCCTAAT---GAGAAT
260 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *** * * *
428828 GTGTTCATAGTGCCTAATCAAAAAATGAATAAAGATCAATACTAGAATCAAAGTTTGGCTTAGTT
325 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTT
* * *
428893 GAGGCACGAACATAGACTTTACAAAAATTGGT-GAGAAGAAAGCCTTTC-TAGCAAAACCAAAGC
390 GAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAA-AAAGCCTTTCTTA-CGAAACCAAAGC
* * *
428956 ATCAATATCGTGCATCCTTAGGAG
452 ATCAATATCGTGTATCCTAATGAG
* * * * * * * * *
428980 AAAATTACGTTTATGGTGCCTAATCTC-GAAGAGAATGGGGAGTAGTATGACTATTTATGTTTTT
1 AAGACTATGTTTATGGTGCCTAATC-CATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * *
429044 CTTATTTAAGAGGCAAACTTTAATTCTATCAAAAAATGGTGAAAACAAAAGCTTTTCTTAG-GAC
65 CTTATTTAAGAGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTT-GCGAC
* * * * * *
429108 ACCAAAGCATGAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTAG-TCCCAATCATGAAAAG
128 ACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
429172 AATGGGGAATATTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
193 AATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * *
429237 CTAGGGCAAAGAAAACATTTCCATGCAAACA-ATAATCATCAATATCATTTATCCTAATGAGGAG
258 ATAGGGCAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * *
429301 AATGTGCTTATAGTGCCTAATCAAAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
322 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCA
* * * *
429366 TTTGAGGCATGAACTTAGACATTGCAAAAATTGGTAGGGAAAAAGCCTTTTTTACGAAACCAAAG
387 TTTGAGGCA-CAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAG
429431 CATCAATATCGTGTATCCTAATGAG
451 CATCAATATCGTGTATCCTAATGAG
* * * * *
429456 AAGACTATGTTTACGGTACCTAATCCATAAAAGAATGGCGATTACTATGAGTATTTATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * * * *
429521 TTATTTAAGAGGCAAACTTTAACTCTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACATC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * *
429586 AAAGCATCAGTGTCAAGTATCTTAATGAAGGGAATTTGTTTTTGGTTCCCAATATTGAAAAGAAT
131 AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * * * * * *
429651 AGG-GATTGTTATGAGAATTGATGCATGTCTTTGTTTAACGGATAAACTTTTATTTTAAGAAAAA
196 -GGAGACTGTTATGAGAATTGATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* *
429715 TCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCT-ATGAGGAGAA
259 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
429779 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAAACCATGTCTGTCTCATT
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATT
* * * * * *
429844 TGAGACATGAGCTTAGACTTTACAAAATTTAGTAGGGAAAAAGCCTTTCTTGCGAAACCAAAGCA
389 TGAGGCA-CAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGCA
* *
429909 TCAATATCATGTATCCTAAAGAG
453 TCAATATCGTGTATCCTAATGAG
* * * * *
429932 AAGACTATGTTTATGGTACCAAATCCATAAAAGAAAGGGGATTACTATGAGTATTCAGGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
** *
429997 TTATTTAAGAGACAAACTTTGGCTCTATCAAAAACT-GTGGAAAGAAAAGCTTTTCTTACGACAC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* *
430061 CGAAGCATTAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * * *
430126 TGGGGACTGTTATGAGAATTGATGCATGTCTTTTTTAATGGATGAATTTTGATTTTATGGAAAAT
195 TGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* *
430191 AGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAAT
260 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
** * * *
430256 -TGCCTATAGTGCCTAATCACAAAATGAATGAAAATCAATACTAGAATCCATGTTTGTCTCATTT
325 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTT
* * * * *
430320 GAGGCATGACCTTGGACTTTACAAAAATTGGTAGGG-AAAAGCGTTTCTTGCGAAACCAAAGCAT
390 GAGGCA-CAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGCAT
*
430384 CAATATCCTGTATCCTAATGAG
454 CAATATCGTGTATCCTAATGAG
* * *
430406 AAGACTATGTTTATGGTACCTAATCCATAAAAGAATGGCGATTACTATGAGTATTCATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * **
430471 TTGTTTAAGAGACAAAC-TT--CTCCATCAAAAATAGAGGAAAGAAAAGCTTTTCTTATGACACC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * * * * * *
430533 AAAGAATCAATGTCAAGTATCCTAAAGAAGGGAATTTGTTTTCGGTTCGCAATATTGAAATGATT
131 AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * * * * *
430598 GGGGACTGTTATGAGAATTGATGCATGCCTTTGTTTAATGGATGAACTTTGCTTTTAAGGAAAAT
196 GGAGACTGTTATGAGAATTGATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
** *
430663 CTGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAAT
260 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * ** * *
430728 GTGCTAATAGTGCCTAATCAGTAAATGAATCAAGATCATTACTAGAATCCGTGTTTGTCTCATTT
325 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTT
* * **
430793 GAGGCACGAACTTAGGCTTTGCAAAAATTGGT-GGGAAAAAAGCC-TTCTTAAAAAACCAAAGCA
390 GAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGG-AAAAAGCCTTTCTTACGAAACCAAAGCA
* *
430856 CCAATATTGTGTATCCTAATGAG
453 TCAATATCGTGTATCCTAATGAG
* * * ** ** * *
430879 AAGACTAAGTTTATGGTGCCAAAT-CGTGAAAAGAATGGGGAAGAGTATGTTTCTTTATGTTTGT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
*** *
430943 CTTATTTAAGAGACAAACTTTGATTCTAAT-AAAAACACTGGAAAGAAAAGCTTTTCTTGCAACA
65 CTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * **
431007 CTAAAGCATCAACGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
129 CCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * ** * * *
431072 ATGGGGACTATTATGAGAATAAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGTAAAC
194 ATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
431137 TAGGGCATAGAAAAAAATTT-CACGCAAAGGAAAATCATCAATATCATTTATCCTAATGA-GAAA
259 TAGGGCAAAG-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
431200 ATGTGTTTCTATTGCTTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCAT
323 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCAT
* * * * * *
431265 TTGAGGCTCGAACATAGACTTTACAAGATTTGGT-GGGAAAAAAAAGCCTTTCTTAAGAAACTAA
388 TTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGG---AAAAAGCCTTTCTTACGAAACCAA
*
431329 AGC-CCAATATCGTGTATCCTAATGAG
449 AGCATCAATATCGTGTATCCTAATGAG
* * * * *
431355 AAGACTAAGTTTATGGTGCCTAAT-CAT-GAAGAATGGGGAATAGTATGAGTATTCGTGTTTATC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
** * * * ** * * * *
431418 CCATTTAAAAGACCAACTTTGATTCTATTAAAAACAGTGGAAAGAATAGCTTTTCTAGTGACCCC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* *
431483 AAAGCATCAATGTCTAGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
131 AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * * *
431548 AGG-GACT-TGCATGAGATTTGATGCATGTCTTATTTAATGGATGAACTTTGATTTT-AGGAAAA
196 -GGAGACTGT-TATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * *
431610 AACGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGA
259 TA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
431675 ATATGTTTAGAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCAT
323 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCAT
* * * *
431740 TTGAGGCACGAATTTAGACTTTACAAAAATTAGTAGGGAAAATGCCTTTCTTGCGAAACCAAAGC
388 TTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGC
*
431805 GTCAATATCGTGTATCCTAATGAG
452 ATCAATATCGTGTATCCTAATGAG
* * * * * *
431829 AAGACTATGTTTATAGTACCTAATCCATAAAAGAATGGCGATCACTATAAGTATTCATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* ** * * * * *
431894 TTATTTAGGAGGTAAACTTTGACTCTATCAAAAACGGTGAAAAGAGAAA-CCTTTCTTCCGACAC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA-AAAGCTTTTCTTGCGACAC
* ** * * *
431958 TAAAGCATCAATGTCTTGTATACTAATGAAAGGG-ATGTGTTTTAGGTTCCCAAGGC-TGAAAAG
130 CAAAGCATCAATGTCAAGTATCCTAATG-AAGGGAATGTGTTTTTGGTTCCCAA-TCTTGAAAAG
* * *
432021 AATGGAGACTGTTACGAAAATCT-ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAA
193 AATGGAGACTGTTATGAGAAT-TGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
** * * * *
432085 AATAATGCATAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGGAA
257 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * *
432150 AATGTGTTTATATTGCTTAATCACAAAAT-AATGAAGATCAATACTAGAATCCTTGTTTGGCTTA
322 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCA
* * * **
432214 TTTGAGGCACAAATTTAAACTTTATAAAAATTGGT-GGGAAAAAAGCCTTTCTTAAAAAACCAAA
387 TTTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGG-AAAAAGCCTTTCTTACGAAACCAAA
* *
432278 GCA-CGAATATCATGTATGCTAATGAG
450 GCATC-AATATCGTGTATCCTAATGAG
* *
432304 AAGACTATGTTTATGGTGCCTAAT-CATGAAAAGAATAGGGAATAGTATGAGTATTCATGTTTGT
1 AAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * * * * *
432368 CTTATTTGAGAGACAAACTTTGAGTCTATCAAAAACGATGGAACGAAAAGCTTTTCTTACAACGC
65 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * *
432433 CAAAGCATCAATGTGAAGTATCTTAATGAAGGGAATTTGTTTTTGGTTCCCAATCTTGAGAAGAA
130 CAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * ** * *
432498 TGGGGACTGTTATGAGAATTGATGCATGTCCTT-TTTAATAGATGAATTTTGATTTTATGGAAAA
195 TGGAGACTGTTATGAGAATTGATGCTTGT-CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * *
432562 TAGGGCATAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGGAGAA
259 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
** * * * * * *
432627 TGTGCATATAGTGGCTAATCATAAAATGAATGAAGATCAATACTAGAAGCCATGTTTGTCTTATT
324 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATT
* * * * * *
432692 TGAGGCA-AGAGCTTACACTTTAAAAAAATTGGTAAGG-AAAGGCCTTTCTTGCAAAACCAAAGC
389 TGAGGCACA-A-CTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGC
432755 ATCAATATCGTGTATCCTAATGAG
452 ATCAATATCGTGTATCCTAATGAG
* * *
432779 AAGACTATGTTTAT-GTACCTAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTC
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * * *
432843 TTATTTAAGAGTCGAACTTTGATTCTATTAAAAATGATGGAAAGAAAAGCTTTTCTAGTGACCCC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * **
432908 AAAGCATCAATGTCCAGTATCCTAATGAAGGAAATGCATTTTTGGTTCCCAATCTTGAAAAGAAT
131 AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * *
432973 AGG-GACTGTTATGAGAATTGATG-TATGTTTTATTTAATGGATGAACTTTGATTTTAAGAAAAA
196 -GGAGACTGTTATGAGAATTGATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTTAAG-GAAA
** * *
433036 ATA-GGCAAAGAAAAGATTTTTATGCAAAAGAAAAACATTAATAT-ATTTTATCCTAATGAGGAG
258 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAG
* * *
433099 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAAATCTTTACTAGAAT-CTATGTTTGTCTC
322 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCT-TGTTTGTCTC
* * * *
433163 ATTTGAGGCACGAACTTTGACTTTTCAAAAATTGGTAGGGAAAATGCCTTTCTTGCGAAACCAAA
386 ATTTGAGGCAC-AACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAA
433228 GCATCAATATCGTGTATCCTAAT---
450 GCATCAATATCGTGTATCCTAATGAG
* ** *
433251 --G---A-----A-----CCTAATCCATAAAAGAATGGCGATTACAATGAGTATTCATGTTTGTT
1 AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
** * * *
433301 TTATTTAAGAGACAAACTTTGGCTCTATCAAAAACGGCGAAAAGAAAAGCTTTTCTTGCGACACC
66 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
*
433366 ATAGCATCAATGT
131 AAAGCATCAATGT
433379 TGTGAGCTCA
Statistics
Matches: 7825, Mismatches: 1157, Indels: 340
0.84 0.12 0.04
Matches are distributed among these distances:
458 109 0.01
462 1 0.00
467 1 0.00
470 2 0.00
471 185 0.02
472 543 0.07
473 1079 0.14
474 1390 0.18
475 1783 0.23
476 2379 0.30
477 349 0.04
478 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
AAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
GGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTG
AGGCACAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTACGAAACCAAAGCATCA
ATATCGTGTATCCTAATGAG
Found at i:427823 original size:949 final size:950
Alignment explanation
Indices: 423804--433252 Score: 11502
Period size: 949 Copynumber: 10.0 Consensus size: 950
423794 AAGGAGATTT
* * * * *
423804 GTATGACTATTTATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGATGAAAAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
* * * ** **
423869 AAAAGCTTTTCTTGTGACACCAAAGCATGAATGTCGTGTATCCTAATGAATAGAATGTGTTTTTG
66 AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
* ** * * * *
423934 GTTCCCAAT-CTTGAAAAGAATGAGGACTATTACAAGAATCGATTCTTGTCTTATTTAAGGGATG
131 GTTCCCAATAC-TGAAAAGAATG-GGACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATG
* ***
423998 AACTTTGATTTTAAGGAAATTAACGCAAAGAAAAGATTTCCATGCAAAA-AGAAATCATCAATAT
194 AACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGA-AAATCATCAATAT
* * * *
424062 CATTTATCTTAATGAGGAGAACATG-T-TTATATTGCTTAATCACAAAATGAATGAAGATCAATA
258 CATTTATCCTAATGAGGAG-A-ATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
*
424125 CTAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTTGGTA-GGAAAA
321 CTAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTT-GTAGGGAAAA
* * *
424188 AAGCCTTTCTT-AAGAAACCAAAGCA-CTAATATCGTGTATCCTAATGAGACGACTAAGTTTATG
385 AA-CCTTTCTTGCA-AAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGTTTATG
* *
424251 GTGCCTAAT-CATGAAAAGAATAGG-GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
447 GTGCCTAATCCAT-AAAAGAAT-GGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
424314 AAACTTTAAGTCAATCAAAAATGGTGGAAAG-AAAGCTTTTCTCGCGGCACC-AAAGCATCTATG
510 AAACTTTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-CCTAAAGCATCAATG
* * * * * * *
424377 TCATGTATCCTAGTGAA-GAGAATGTGTTTTAGGTTCTCAATCCTGTAAACAATGGAGATTGTTA
574 TCTTGTATCCTAATGAAGGA-AATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
** * * *
424441 CAAGAATTGATGCTTATCTTATTAAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA
638 TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA
* * * * * * *
424506 AAATTTCCACGTAAAAGAAAATCATCAATAGCATTTATCCTAATAAGGAGAATTTGTTTATAGTG
703 AGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTG
* * * * *
424571 CGTAATCATAAAATGAATGAAGATTAATACAAGAATCCTTGTTTGGCTCATTTGAGGCA-CAAGA
768 CGTAATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTT-GCTCATTTGAGGCATGAA-C
* * ** * *
424635 TTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGT
831 TTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGT
* * * ** * * *
424700 ATCCTAATGAAAAGACTATGTCTATGGTAACTAATCCAT-AAGAGAATGGGGATTA
896 ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATTGGGAATA
* **
424755 CTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
* * * ** *
424820 AAAAGCTTTTCTTGCGACACCAAAGCATTAATATCTTGTATCCTAATGAAGGGAATGAGTTTTTG
66 AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
* * * * * * * *
424885 GTTCCCAATCCTAAAAAGAATGGAGATTGTTATGAGAATAGTTGCTTATCTTATTTAAGGGATGA
131 GTTCCCAATACTGAAAAGAATGG-GACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATGA
* * * * * * * *
424950 ACTTTGATTTTGAGAAAAATAGGGCAAACAAAAGGTTTCCACGTAAAAGAAAATCATCAATATCG
195 ACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * ** *
425015 TTTATCCTAATGAGGAAAATGTTTTTATAGTGCGTAATCATGAAATGAATGAAGATCATTACCAG
260 TTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* *
425080 AATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGT-GGGAAAAAAGCC
325 AATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAA-CC
* * * * *
425144 TTTCTT--AAGGGACCAAAGCACCAATATTGTGTATCCTAATGAGAAGACTAAGTTTATGGTGAC
389 TTTCTTGCAA--AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * ** * * * *
425207 T-AT-TAGTGAAAAGAATGGGGAAGAGTCTGTGTATTCATGTTTGTCTTA-TTAAGAGACAAATT
452 TAATCCA-T-AAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * **
425269 TTGATTCTATGAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCAAG
515 TTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-CCTAAAGCATCAATGTCTTG
* * * * * *
425333 TATCCTAAAGAAGGGAATGTGTTTTTGGTTCCTAATCTGGAAAAGAATGGAGACTATTATGAGAA
579 TATCCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
* * * * *
425398 TCGATTCTTATCTT-TTTAAGGGATGAACTTTGATTTTAAGAAAAATGGGGCAAAGAAAGGATTT
644 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTT
* * *
425462 TCCCG-AAAAGAAAATCATCAATATCATTTGTCCTAATGGGGAGAATGTGTTTATATTGCGTAAT
709 TCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAAT
* * * * *
425526 CACAAAATGAATGAAGATCATTACTAGAATCCTTTTTTAGCTTATTTGAGGAATTAACTTAGACT
774 CACAAAATGAATGAAGATCAATACTAGAATCCTTGTTT-GCTCATTTGAGGCATGAACTTAGACT
* *
425591 TTATAAAAATTGG-GGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTGA
838 TTACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTAA
425655 TGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
903 TGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
* * * *
425703 GTATAAGTATTCATGTTTGTCTTATTTAAGACACGAACTTTGATTCTATCAAAAATGATGGATAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
** * *
425768 AAAA-AATTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATG-ACGGAAAGTGTTTTTG
66 AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
*
425831 GTTCCCAATACTGAAAAGAATGGCGACTGTAATGAGAATTGATGCATGTCTTATTTAATGGATGA
131 GTTCCCAATACTGAAAAGAATGG-GACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATGA
* * *
425896 ACTTTGATTTTAAGCAAAATCGGGCAAAGAAAATATTTCCATGCAAAAGGAAATCATCAATATCA
195 ACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
425961 TTTATCCTAAAGAGGAGAATGTTCTTATAGTGCCTAATCACAGAATGAATCAAGATCGTTACTA-
260 TTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
*
426025 AAGTCCTTGTTTGTCTCATTTGAGGCACAAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACC
325 AA-TCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACC
* *
426090 TTTCTCGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGCT-CCT
389 TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG-TGCCT
* *
426154 AATCCATAAAAGAGTGGAGATTACTATGAGTATTCATGTTTGTCTTACTTAAGAGACAAACTTTG
453 AATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
*
426219 ACTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTTGCGACCCTAAAGCATCAATGTCTTGTAT
518 ACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC-TTGCGACCCTAAAGCATCAATGTCTTGTAT
* * * * *
426284 CCTATTGAAGAAAATGTATTTTAGGTTCCCAATCTTGAAACGAAT-GAAACCTGTTATGAGAATC
582 CCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGA-CTGTTATGAGAATC
* * *
426348 GATGCTTGTCTTATTTAAGGGAAGAACTTTGACTTTAAGTAAAATAGGGCATAGAAAAGATTTTC
646 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTTC
* * *
426413 ACGCAAAAGAATATAATCAATATCATTTATCCTAATGAGGAGAATGTTTTTATATTGCGTAATCA
711 ACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAATCA
* * * * *
426478 CAAAATGAATGAAGATCATTACTAGAATCCTTTTTTAGCTTATTTGAGGAATTAACTTAGACTTT
776 CAAAATGAATGAAGATCAATACTAGAATCCTTGTTT-GCTCATTTGAGGCATGAACTTAGACTTT
* *
426543 ATAAAAATTGG-GGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTGATG
840 ACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTAATG
426607 AGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
905 AGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
* * * *
426653 GTATAAGTATTCATGTTTGTCTTATTTAAGACACGAACTTTGATTCTATCAAAAATGATGGATAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
** * *
426718 AAAA-AATTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATG-ACGGAAAGTGTTTTTG
66 AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
*
426781 GTTCCCAATACTGAAAAGAATGGCGACTGTAATGAGAATTGATGCATGTCTTATTTAATGGATGA
131 GTTCCCAATACTGAAAAGAATGG-GACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATGA
* * * *
426846 ACTTTGATTTTAAGCAAAATCAGGCAAAGAAAATATTTCCATGCAAAAGGAAATCATCAATATCA
195 ACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
426911 TTTATCCTAAAGAGGAGAATGTTCTTATAGTGCCTAATCACAGAATGAATCAAGATCGTTACTA-
260 TTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
*
426975 AAGTCCTTGTTTGTCTCATTTGAGGCACAAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACC
325 AA-TCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACC
* *
427040 TTTCTCGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGCT-CCT
389 TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG-TGCCT
*
427104 AATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTACTTAAGAGACAAACTTTG
453 AATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
427169 ACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTGTATC
518 ACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTGTATC
* * * * * *
427234 CTATTGAAGGAAATGTATTTTAGGTTCCCAATCTTGAAACGAA-AGAAACCTGTTATGTGAATCG
583 CTAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGA-CTGTTATGAGAATCG
* * * *
427298 ATGCTTGTTTTATTTAAGGGAAGAACTTTGACTTTAAGTAAAATAGGGCATAGAAAAGATTTTCA
647 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTTCA
* * *
427363 CGCAAAAGAATATAATCAATATCATTTATCCTAATGAGGAGAATGTTTTTATATTGCGTAATCAC
712 CGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAATCAC
* * * * *
427428 AAAATGAATGAAGATCATTACTAGAATCCTTTTTTAGCTTATTTGAGGAATTAACTTAGACTTTA
777 AAAATGAATGAAGATCAATACTAGAATCCTTGTTT-GCTCATTTGAGGCATGAACTTAGACTTTA
* *
427493 TAAAAATTGG-GGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTGATGA
841 CAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTAATGA
427557 GAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
906 GAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
* * * *
427602 GTATAAGTATTCATGTTTGTCTTATTTAAGACACGAACTTTGATTCTATCAAAAATGATGGATAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
** * *
427667 AAAA-AATTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATG-ACGGAAAGTGTTTTTG
66 AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
*
427730 GTTCCCAATACTGAAAAGAATGGCGACTGTAATGAGAATTGATGCATGTCTTATTTAATGGATGA
131 GTTCCCAATACTGAAAAGAATGG-GACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATGA
* * *
427795 ACTTTGATTTTAAGCAAAATCGGGCAAAGAAAATATTTCCATGCAAAAGGAAATCATCAATATCA
195 ACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
427860 TTTATCCTAAAGAGGAGAATGTTCTTATAGTGCCTAATCACAGAATGAATCAAGATCGTTACTA-
260 TTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
*
427924 AAGTCCTTGTTTGTCTCATTTGAGGCACAAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACC
325 AA-TCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACC
* * **
427989 TTTCTCGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGCCCCTA
389 TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
*
428054 ATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTACTTAAGAGACAAACTTTGA
454 ATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
428119 CTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTGTATCC
519 CTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTGTATCC
* * * *
428184 TATTGAAGGAAATGTATTTTAGGTTCCCAATCTTGAAACGAAT-GAAACCTGTTATGAGAATCGA
584 TAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGA-CTGTTATGAGAATCGA
* * *
428248 TGCTTGTCTTATTTAAGGGAAGAACTTTGACTTTAAGTAAAATAGGGCATAGAAAAGATTTTCAC
648 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTTCAC
* * *
428313 GCAAAAGAATATAATCAATATCATTTATCCTAATGAGGAGAATGTTTTTATATTGCGTAATCACA
713 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAATCACA
* * *
428378 AAATGAATGAAGATCAACACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGACTATAC
778 AAATGAATGAAGATCAATACTAGAATCCTTGTTT-GCTCATTTGAGGCATGAACTTAGACTTTAC
* * * *
428443 AAAAATTGGTGAGAAAAAAGCCTTTCTTATGAAACCAAAGCACCAATATCGTGTATCCTAATGAG
842 AAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTAATGAG
* ** *
428508 AATACTAAGTTTATGGTGCCTAATTGTGAAAAGAATAGGGAATA
907 AAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
* * ** * *
428552 GTATGAGTATTCATATTTATCTTATTTAAGAGATTAACTTTGATTCTATCGAAAATGGTGGAAAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
* * * **
428617 AAATGCTTTTCTAGTGACACCAAAGCATCAATGTCAAGTATCCCAATGAAGAAAATGTGTTTTTG
66 AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
* * * * **
428682 GTTCCCAAT-CTTGAAAAGAATGGAGACTGTTACGAGAATCGTTGCTTGTCTT-TTTAGGGGATG
131 GTTCCCAATAC-TGAAAAGAATGG-GACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATG
* * * *
428745 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCACCAATATC
194 AACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
428810 ATTTATCCTAAT---GAGAATGTGT-TCATAGTGCCTAATCAAAAAATGAATAAAGATCAATACT
259 ATTTATCCTAATGAGGAGAATGT-TCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*** * * * * * * * *
428871 AGAATCAAAGTTTGGCTTAGTTGAGGCACGAACATAGACTTTACAAAAATTGGT-GAGAAGAAAG
323 AGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAA-AAAA
* * * * * * *
428935 CCTTTCTAGCAAAACCAAAGCATCAATATCGTGCATCCTTAGGAGAAAATTACGTTTATGGTGCC
387 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * * * *
429000 TAATCTC-GAAGAGAATGGGGAGTAGTATGACTATTTATGTTTTTCTTATTTAAGAGGCAAACTT
452 TAATC-CATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * * * *
429064 TAATTCTATCAAAAAATGGTGAAAACAAAAGCTTTTCTTAG-GACACC-AAAGCATGAATGTCAT
516 TGACTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTT-GCGAC-CCTAAAGCATCAATGTCTT
* * * * * *
429127 GTATCCTAATGAAAGG-AATTTGTTTTTA-G-TCCCAATCATGAAAAGAATGGGGAATATTACGA
578 GTATCCTAATG-AAGGAAATGTG-TTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
* * * * *
429189 GAATTGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAACTAGGGCAAAGAAAACA
641 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGA
* * * * * *
429254 TTTCCATGCAAACA-ATAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
706 TTTTCACGCAAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCG
* * * *
429318 TAATCAAAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
770 TAATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTG-CTCATTTGAGGCATGAACTTA
* * * * * * *
429383 GACATTGCAAAAATTGGTAGGGAAAAAGCCTTTTTTACGAAACCAAAGCATCAATATCGTGTATC
834 GACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATC
* * * *
429448 CTAATGAGAAGACTATGTTTACGGTACCTAATCCAT-AAAAGAA-TGGCGATTA
899 CTAATGAGAAGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATTGG-GAATA
* * * * * * * *
429500 CTATGAGTATTTATGTTTGTCTTATTTAAGAGGCAAACTTTAACTCTACCAAAAACGGTGGAAAG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
* * * * *
429565 AAAAGCTTTTCTTA-CAACATCAAAGCATCAGTGTCAAGTATCTTAATGAAGGGAATTTGTTTTT
66 AAAAGCTTTTC-TAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTT
* * * *
429629 GGTTCCCAATATTGAAAAGAATAGGGATTGTTATGAGAATTGATGCATGTCTTTGTTTAACGGAT
130 GGTTCCCAATACTGAAAAGAAT-GGGACTGTTATGAGAATTGATGCATGTC-TTATTTAATGGAT
* * * *
429694 AAACTTTTATTTTAAGAAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACAT
193 GAACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* *
429759 CATTTATCCT-ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACT
258 CATTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * * * * *
429823 AGAAACCATGTCTGTCTCATTTGAGACATGAGCTTAGACTTTA-CAAAATTTAGTAGGGAAAAAG
323 AGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTT-GTAGGGAAAAAA
* * * *
429887 CCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGTTTATGGTACC
387 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
429952 AAATCCATAAAAGAAAGGGGATTACTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACTTT
452 TAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * **
430017 GGCTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTACGACACC-GAAGCATTAATGTCAAGTA
517 GACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-CCTAAAGCATCAATGTCTTGTA
* * * *
430081 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTGTTATGAGAATT
581 TCCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * * * *
430146 GATGCATGTCTTTTTTAATGGATGAATTTTGATTTTATGGAAAATAGGGTAAAGAAAAGATTTCC
646 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTTC
* * ** * *
430211 ATGCAAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAAT-TGCCTATAGTGCCTAATCA
711 ACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAATCA
* * * *
430275 CAAAATGAATGAAAATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCATGACCTTGGACTTT
776 CAAAATGAATGAAGATCAATACTAGAATCCTTGTTTG-CTCATTTGAGGCATGAACTTAGACTTT
* * ** * * *
430340 ACAAAAATTGGTAGGG-AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTAATG
840 ACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTAATG
* * *
430404 AGAAGACTATGTTTATGGTACCTAATCCAT-AAAAGAA-TGGCGATTA
905 AGAAGACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATTGG-GAATA
* * * *
430450 CTATGAGTATTCATGTTTGTCTTGTTTAAGAGACAAAC-TT--CTCCATCAAAAATAGA-GGAAA
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GATGGAAA
* * * *
430511 GAAAAGCTTTTCTTA-TGACACCAAAGAATCAATGTCAAGTATCCTAAAGAAGGGAATTTGTTTT
65 GAAAAGCTTTTC-TAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTT
* * * * * * *
430575 CGGTTCGCAATATTGAAATGATTGGGGACTGTTATGAGAATTGATGCATGCCTTTGTTTAATGGA
129 TGGTTCCCAATACTGAAAAGAAT-GGGACTGTTATGAGAATTGATGCATGTC-TTATTTAATGGA
* *
430640 TGAACTTTGCTTTTAAGGAAAATCTGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
192 TGAACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * ** *
430705 TCATTTATCCTAATGAGGAAAATGTGCTAATAGTGCCTAATCAGTAAATGAATCAAGATCATTAC
257 TCATTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * ** *
430770 TAGAATCCGTGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTGCAAAAATTGGT-GGGAAAAAA
322 TAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAA
** * * *
430834 GCC-TTCTTAAAAAACCAAAGCACCAATATTGTGTATCCTAATGAGAAGACTAAGTTTATGGTGC
387 -CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * ** * ** * *
430898 CAAAT-CGTGAAAAGAATGGGGAAGAGTATGTTTCTTTATGTTTGTCTTATTTAAGAGACAAACT
451 CTAATCCAT-AAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* ** * * *
430962 TTGATTCTAAT-AAAAACACTGGAAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAACGTCTTG
515 TTGACTCT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTG
* * * *
431026 TATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTATGAGAA
579 TATCCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
** * * * * *
431091 TAAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGTAAACTAGGGCATAGAAAAAAATT
644 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTT
* * * *
431156 TCACGCAAAGGAAAATCATCAATATCATTTATCCTAATGA-GAAAATGTGTTTCTATTGCTTAAT
709 TCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAAT
* *
431220 CACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGC-TCGAACATAGAC
774 CACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTG-CTCATTTGAGGCAT-GAACTTAGAC
* * *
431284 TTTACAAGATTTGGTGGGAAAAAAAAGCCTTTCTTAAG-AAACTAAAGC-CCAATATCGTGTATC
837 TTTACAAAAATTGGTGGG--GAAAAAGCCTTTCTTAAGAAAAC-AAAGCACCAATATCGTGTATC
*
431347 CTAATGAGAAGACTAAGTTTATGGTGCCTAATCATG--AAGAATGGGGAATA
899 CTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
* * ** * * * *
431397 GTATGAGTATTCGTGTTTATCCCATTTAAAAGACCAACTTTGATTCTATTAAAAA-CAGTGGAAA
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGA-TGGAAA
* * * * *
431461 GAATAGCTTTTCTAGTGACCCCAAAGCATCAATGTCTAGCATCCTAATGAAGGGAATGTGTTTTT
65 GAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTT
* *
431526 GGTTCCCAAT-CTTGAAAAGAATAGGGACT-TGCATGAGATTTGATGCATGTCTTATTTAATGGA
130 GGTTCCCAATAC-TGAAAAGAAT-GGGACTGT-TATGAGAATTGATGCATGTCTTATTTAATGGA
* * *
431589 TGAACTTTGATTTT-AGGAAAAAACGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAAT
192 TGAACTTTGATTTTAAGG-AAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * *
431653 ATCATTTATCCTAATGAGGAGAATATGT-TTAGAGTGCCTAATCACAAAATGAATGAAAATCATT
256 ATCATTTATCCTAATGAGGAGAATGT-TCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * *
431717 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACAAAAATTAGTAGGGAAAA
320 ACTAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAA
** * * * *
431782 TGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTAATGAGAAGACTATGTTTATAGTA
385 AACCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * **
431847 CCTAATCCATAAAAGAATGGCGATCACTATAAGTATTCATGTTTGTCTTATTTAGGAGGTAAACT
450 CCTAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
431912 TTGACTCTATCAAAAACGGTGAAAAGAGAAA-CCTTTCTTCCGACACTAAAGCATCAATGTCTTG
515 TTGACTCTATCAAAAACGGTGGAAAGA-AAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTG
* * * * *
431976 TATACTAATGAAAGG-GATGTGTTTTAGGTTCCCAAGGC-TGAAAAGAATGGAGACTGTTACGAA
579 TATCCTAATG-AAGGAAATGTGTTTTAGGTTCCCAA-TCTTGAAAAGAATGGAGACTGTTATGAG
* ** *
432039 AATCTATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAATGCATAGAAAAGAT
642 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGAT
* * * *
432104 TTCCACGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGGAAAATGTGTTTATATTGCTTA
707 TTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTA
* ** * *
432169 ATCACAAAAT-AATGAAGATCAATACTAGAATCCTTGTTTGGCTTATTTGAGGCACAAATTTAAA
772 ATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTT-GCTCATTTGAGGCATGAACTTAGA
* * * * *
432233 CTTTATAAAAATTGGTGGGAAAAAAGCCTTTCTTAA-AAAACCAAAGCACGAATATCATGTATGC
836 CTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAA-CAAAGCACCAATATCGTGTATCC
* *
432297 TAATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAAGAATAGGGAATA
900 TAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
* * * *
432348 GTATGAGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGAGTCTATCAAAAACGATGGAACG
1 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
* * * * *
432413 AAAAGCTTTTCTTA-CAACGCCAAAGCATCAATGTGAAGTATCTTAATGAAGGGAATTTGTTTTT
66 AAAAGCTTTTC-TAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTT
* *
432477 GGTTCCCAAT-CTTGAGAAGAATGGGGACTGTTATGAGAATTGATGCATGTCCTT-TTTAATAGA
130 GGTTCCCAATAC-TGAAAAGAAT-GGGACTGTTATGAGAATTGATGCATGT-CTTATTTAATGGA
* * * * *
432540 TGAATTTTGATTTTATGGAAAATAGGGCATAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
192 TGAACTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * * *
432605 TCATTTATTCTAATGAGGAGAATGTGCATATAGTGGCTAATCATAAAATGAATGAAGATCAATAC
257 TCATTTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * * * * * **
432670 TAGAAGCCATGTTTGTCTTATTTGAGGCAAGAGCTTACACTTTAAAAAAATTGGTAAGG-AAAGG
322 TAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAA
*
432734 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTAT-GTACC
387 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* *
432798 TAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGTCGAACTTT
452 TAATCCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * * * **
432863 GATTCTATTAAAAATGATGGAAAGAAAAGCTTTTCTAGTGACCCCAAAGCATCAATGTCCAGTAT
517 GACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTGTAT
** * *
432928 CCTAATGAAGGAAATGCATTTTTGGTTCCCAATCTTGAAAAGAATAGG-GACTGTTATGAGAATT
582 CCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAAT-GGAGACTGTTATGAGAATC
* * *
432992 GATG-TATGTTTTATTTAATGGATGAACTTTGATTTTAAGAAAAAATA-GGCAAAGAAAAGATTT
646 GATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTTAAG-TAAAATAGGGCAAAGAAAAGATTT
* * * * * * *
433055 TTATGCAAAAGAAAAACATTAATAT-ATTTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAA
709 TCACGCAAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAA
* ** * *
433119 TCACAAAATGAATGAAAATCTTTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAACTTTGA
773 TCACAAAATGAATGAAGATCAATACTAGAATCCT-TGTTTG-CTCATTTGAGGCATGAACTTAGA
* * * ** * *
433183 CTTTTCAAAAATTGGTAGGGAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
836 CTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCT
433248 AATGA
901 AATGA
433253 ACCTAATCCA
Statistics
Matches: 7536, Mismatches: 838, Indels: 249
0.87 0.10 0.03
Matches are distributed among these distances:
945 2 0.00
946 319 0.04
947 745 0.10
948 997 0.13
949 2020 0.27
950 1889 0.25
951 1159 0.15
952 401 0.05
953 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (950 bp):
GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAG
AAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTG
GTTCCCAATACTGAAAAGAATGGGACTGTTATGAGAATTGATGCATGTCTTATTTAATGGATGAA
CTTTGATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGGAGAATGTTCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
ATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTTGTAGGGAAAAAACCTT
TCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
CCATAAAAGAATGGAGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACT
CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCTAAAGCATCAATGTCTTGTATCCTA
ATGAAGGAAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTTCACGCA
AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCGTAATCACAAAA
TGAATGAAGATCAATACTAGAATCCTTGTTTGCTCATTTGAGGCATGAACTTAGACTTTACAAAA
ATTGGTGGGGAAAAAGCCTTTCTTAAGAAAACAAAGCACCAATATCGTGTATCCTAATGAGAAGA
CTAAGTTTATGGTGCCTAATCATGAAAAGAATTGGGAATA
Found at i:434195 original size:13 final size:13
Alignment explanation
Indices: 434177--434202 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
434167 CTATTTATGA
434177 TGTATCGATACAC
1 TGTATCGATACAC
434190 TGTATCGATACAC
1 TGTATCGATACAC
434203 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:434295 original size:14 final size:14
Alignment explanation
Indices: 434276--434307 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
434266 TACGTGAACA
434276 GTATGAACAGTGAT
1 GTATGAACAGTGAT
434290 GTATGAACAGTGAT
1 GTATGAACAGTGAT
434304 GTAT
1 GTAT
434308 CGATACATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (14 bp):
GTATGAACAGTGAT
Found at i:434347 original size:22 final size:22
Alignment explanation
Indices: 434292--434347 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
434282 ACAGTGATGT
434292 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
434314 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
434335 ATGAACAGTGATG
1 ATGAACAGTGATG
434348 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:434354 original size:10 final size:10
Alignment explanation
Indices: 434335--434365 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
434325 GTATCGATAC
434335 ATGAACAGTG
1 ATGAACAGTG
*
434345 ATGAATAGTG
1 ATGAACAGTG
434355 ATGAACAGTG
1 ATGAACAGTG
434365 A
1 A
434366 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:434453 original size:53 final size:53
Alignment explanation
Indices: 434389--434525 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
434379 CTACTTCCAA
434389 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
434442 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
*
434495 TGTATCGATACCTATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
434526 TATGCAATTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:434558 original size:20 final size:20
Alignment explanation
Indices: 434513--434566 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
434503 TACCTATTTG
*
434513 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATGAAA
* *
434533 TTTGTATCGATAC-ATTTAAA
1 TGTGTATCGATACTA-TGAAA
434553 TGTGTATCGATACT
1 TGTGTATCGATACT
434567 TTTCAGGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTGTATCGATACTATGAAA
Found at i:434627 original size:21 final size:21
Alignment explanation
Indices: 434603--434645 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
434593 AAGTCAACCT
434603 TATGTATTAATACCAATA-GTA
1 TATGTATTAATA-CAATACGTA
*
434624 TATGTATTGATACAATACGTA
1 TATGTATTAATACAATACGTA
434645 T
1 T
434646 TTTTACTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (21 bp):
TATGTATTAATACAATACGTA
Found at i:435884 original size:475 final size:473
Alignment explanation
Indices: 434847--449744 Score: 16483
Period size: 476 Copynumber: 31.4 Consensus size: 473
434837 AATCCTAACA
* * *
434847 AATGTCATGTA-CACTAATGAAGGGAATGTGTTTTGGGTTCCCAATCTTAAAAAGAATGGAGACT
1 AATGTCATGTATC-CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACT
* * * *
434911 ATTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTTAGTAAAATAGGGCACA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* *
434976 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTGTCCTAATGAGGAGAGTGTGTT-TA
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTATA
* * *
435040 TGTTGCTTAAGCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTCG-CTCATTTGAGGCA
195 -G-TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTT-GTCTCATTTGAGGCA
* ** * *
435104 CAAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTTAAGAAACTAAAGCATGAATA
257 CGAACTTAGACTTTACAAAAATTGGTAGGG--AAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* * * * *
435168 GT-TTGTATCCTAATGAGAAGACTATGTTTCTGGTGCCTAAT-CATGAAAAGAATCAGGAATATT
320 -TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGT
* ** * *
435231 ATTAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGATGGAAAGAA
382 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAA
* *
435296 AAGCTTCTC-TAGCGACACCAATGCATC
447 AAGCTTTTCTTA-CGACACCAAAGCATC
* ** * * * *
435323 AATGTCAAGTATCCTAATGAAATGAATGTGTTTTTGGTTCGCAATCTTGAAAAGAATGGGGACCA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * ** * * *
435388 TTATGAGAATTGATGCATGTCTTTTTTAATAGATGAATTTTGATTTTATGGAAAATAGGGCAAAC
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * *
435453 CAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGACTGTGCATATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTATA
* *
435518 GTGCCTAATCACAAAATGAATGAAGATCAA-AGCTAGAAACCATGTTTGTCTCATTTGAGGCAAG
195 GTGCCTAATCACAAAATGAATGAAGATCAATA-CTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
435582 AGCTTAGACTTTATAAAAATTGGTAAGGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCAT
259 AACTTAGACTTTACAAAAATTGGTAGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * * * *
435647 GTATGCTAATGAGAAGACTATGTTTATAGTACCTAGTCTATAAAATAATGGCGATTACTATGAGT
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGG-GATTAGTATGAGT
* * * * * * * * **
435712 CTTCATGCTTGACTTTTTTAAGAGACAAACATCGACTCTACCAAAAATAGTGAAAAGAAAAGCTT
388 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTT
*
435777 TTCTTACAACACCAAAGCATC
453 TTCTTACGACACCAAAGCATC
* * * ** *
435798 AATG-CTAGGTATCCTAAAGAAGGGAATGTGTTTTTGGCTCCCAATATTGAAAAGAATGGGGACT
1 AATGTC-ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACT
* * * * * *** *
435862 GTTATGAGAATTGGTGCATGTCTTTGTTTAATGGATGAACTTTGATTTTAAGGAAAATCTAGTAA
65 ATTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * * * *
435927 AGAAAAGATTTCCATGCAAAAGAAAATGATCAACAACATTTATCCT-TTGAAGAGAATGTGCTTA
129 AGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTA
* * * * *
435991 TAGTGCCTAATCACAAAATAAATGAAGATCAATAGTAGAAACCATGTTTGTCTTATTTGAGGCAT
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * *
436056 GAGCTTAGACTTCACAAAAATTGGTAGGGAAAAAGCCTTTCTTGCGAAACCAGAGCATCAATATC
258 GAACTTAGACTTTACAAAAATTGGTAGGG-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * * * *
436121 ATGTATCCTAAGGACAAGACTATGTTTATGGTACCTTATCCATAAAAGAAAGGCATTACTATGAG
322 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGATTAGTATGAG
* * *
436186 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATC-AAAATGGTGGAAAGAAAAGCT
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCT
* *
436250 TTTCTTATGACACCAAGGCATC
452 TTTCTTACGACACCAAAGCATC
* * * *
436272 AATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
436337 TTATGAGAATTGATGCATGTCCTTTTTAATGGATGAACTTTGATTTTATGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * *
436402 AAAAGATTTCCATGTAAAAGAAAATCATCAATATCATCTACCCTAATGAGAAGAATGTGCTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTATA
** * * *
436467 GTGGTTAATCACAAAATGAATGAAGATCAATACTAGAAACCATGTCTGTCTCATTTGAGGCATGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
436532 GCTTAGACTTTACAAAAATTGGTAAGGAAAAGCTTTTCTTGTGAAACCAAAGCATCAATATCTTG
260 ACTTAGACTTTACAAAAATTGGTAGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * *
436597 TATCCTAAT--G-AGA--A-GTTTATGGTACCTAATCCATAAAAAAATGGTGAATACTATGAGTA
325 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGG-GATTAGTATGAGTA
* * * * * *
436656 TTCATATTTGTCTTATTTAAGAGGCAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGATTT
389 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTT
436721 TCTTACGACACCAAAGCATC
454 TCTTACGACACCAAAGCATC
* * * * * ** *
436741 AATGTCAAGTATCCTGATAAAGGGAGTGTGTTTTTGGTTCCCATTATTGAAAA-AACTGGGGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAA-TGGAGACT
* * * * * * * * *
436805 GTTTTGACAATTGATGCATGTCTTTGTTTAATGGATGAACATTGATTTTAAGGAAAATCGGGCAG
65 ATTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * * * *
436870 AGAAAAGATTTTCATGCAAAAAAAAATCATCGATATCATTTATCCTAATAAGGAAAATGTGCTTA
129 AGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTA
* * *
436935 TAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCAC
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
*
437000 GAACTTAGACTTTGCAAAAATTGGT-GGGAAAAAAGCCTTTCTTAG-GAAACCAAAGCATCAATA
258 GAACTTAGACTTTACAAAAATTGGTAGGG--AAAAGCCTTTCTT-GCGAAACCAAAGCATCAATA
* ** * * * **
437063 TTGTGTATCCTAAAAAGAAGACTAAGTTTGTGGTGCCTAAT-CATGAAAAGAATTAGGAAGAGTA
320 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAA-TGGGATTAGTA
** * * *
437127 TGTTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAA
383 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAA
* *
437192 AGCTTTTCTTGCAACACCAAAGCATC
448 AGCTTTTCTTACGACACCAAAGCATC
* * * * * * *
437218 TATGTCTTGTATCCTAATGAAGGGAATGTGCTTTTGGTTCCTAATCGTGAAAAGAATGCATACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
437283 TTATGAGAATCAATGCTTGTCTTATTTAAGGGATAAACTTCGATTTTAAGGAAAAGAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* ** * * *
437348 AAAAGGTTTCCACATAAAAAAAAAATCATCAATATCATTTATCATAATAAGGAGAATGTGCTTAT
131 AAAAGATTTCCAC-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * *
437413 AGTGCGTAATCAAAAAATGAGTGAAGATCAATACTATAATCCTTGTTTAG-CTCATTTGAGGCAC
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTT-GTCTCATTTGAGGCAC
* * * *
437477 GAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTCTCTAGCAAAAGCAAAGCATCAATAT
258 GAACTTAGACTTTACAAAAATTGGTAGGG--AAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* ** ** * * * *
437541 CGTGCATTATTTTGAGAAGACTACGTTTATGGTGCCTAATCTC-GAAAAGAATAAGGATTAGTGT
321 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CATAAAAGAAT-GGGATTAGTAT
* * *
437605 GACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTATATCAAAAACGGTGAAAAGAAAA
384 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAA
* *
437670 GCTTTTCTTACGGCACCAATGCATC
449 GCTTTTCTTACGACACCAAAGCATC
* * * *
437695 AATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * *
437760 TTATGAGAATTGAAGCTTATCTTTTTTGAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAT
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
** * * *
437825 AAAAGATTTCCTTGCAAAAGAAAATCATAAATACCATTTATCCTAATAAGGAGAATGTGCTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTATA
* * * *
437890 GTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAAACCATGATTGTCTCATTTGAGGCATGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * ** *
437955 GCTTAGACTTTACAAAAATTGGTAAGGAAAAAGCCTTTCTTATGAAACCAAAGCATCAATTTCGT
260 ACTTAGACTTTACAAAAATTGGT-AGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * * *
438020 GTATCCTAATGACAAGACTATGTTTATGGTACCTAATCCATAAAAGAAAGGCATTACTGTGAGTA
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGATTAGTATGAGTA
* *
438085 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGAAAAGAAAAGCTTT
389 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTT
* ** *
438150 CCTGGCGACACCAAAGTATC
454 TCTTACGACACCAAAGCATC
* * * * * * *
438170 AATGTCATGTATACTAATGAAAGGAAAGTGTTTTAGGCTCTCAATCTTGAAAAGAAT-GAGGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGA-GACT
* * * * ** ** *
438234 GTTATGAAAATCAATGCTTGTCTTATTTAATAGATGAACTTTGATGTTT-TTGAAAAAAGGGCAA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT-TTTAAGGAAAATAGGGCAA
* *
438298 AAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTA
129 AGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTA
** * * * * *
438363 TAGTGCCTCGTAACAAAATGCATGAAGATTAATACTGGAATCCATGTTTGTCTTATTTGAGGCAC
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * ** *
438428 GAACTTAGACTTTACAAAATTTGGT-GGGAAAAAAGCCTTTTTTAAGAAACCAAAGCACCAATAT
258 GAACTTAGACTTTACAAAAATTGGTAGGG--AAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * *
438492 CGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCCTAAT-CGTGAAAATAAGGGGGAATAGTAT
321 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAA-TGGGATTAGTAT
** * * * *
438556 GAGTATTCATGTTTGTCTTATTTAAGAGATGAACTCTAATTCTATCAAAAATGGTGGAAAGAAAA
384 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAA
**
438621 GCTTTTCCAACGACACCAAAGCATC
449 GCTTTTCTTACGACACCAAAGCATC
* * * * * *
438646 AATGTCAAGGATCCGAATGAAGGGAATGTGTTTTAGGTTCCCAAACCTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * *
438711 CTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCATAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
438776 AAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTGATGAGGAGAATGTGCTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTATA
* * * * *
438841 GTGCCTAATCAC-AAATGAATGAAAATCATTAATAGAATCCATATTTGTCTCATTTGAGGCATGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
438905 ACTTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTTTTGTGAAAGCAAAGCATTAATATCAT
260 ACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * **
438970 ATATCCTAATGGGAAAACTATGTTTATGGTACCTAATCCATAAAAGAATAGGGATTACAATGAGT
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAAT-GGGATTAGTATGAGT
** * *
439035 ATTTGTGTTTGTCTTATTTAAGAGACAAACTTTGAGTCTATCAAAAATGGTGAAAAGAAAAGCTT
388 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTT
**
439100 TTCTTTTGACACCAAAGCATC
453 TTCTTACGACACCAAAGCATC
* * * *
439121 AATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAAAATAGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * * * *
439186 TTAAGAGAAACGGTACTTGTCTTATTTAAGCGAT-AAGCTTTGATTTTAAGTAAAATAGGGCATA
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAA-CTTTGATTTTAAGGAAAATAGGGCAAA
* * * * *
439250 GAAAAGATTTTCATGCAAAAGAAAATCATTAATATCTTTTATCCTAATGACGAGAATGTGTTTAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * *
439315 AGTGCGTAATCACAAAATGAGTGAAGATCAATACTAGAAT-CATTGTTTTGGCTCATTTGAGGCA
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA-TG-TTTGTCTCATTTGAGGCA
* * ** * *
439379 CGAACTTAGACTTTACAAAAATTGGTGGGGAAAAACCTTTCTTAAGTAACCAAAGCACCAATATC
257 CGAACTTAGACTTTACAAAAATTGGTAGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * *
439444 GTGTATCCTAAAGAGAAGACTAAGTTTATGGAGCCTAAT-CGTGAAAAGAATGGGGAATAGTCTG
322 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTATG
* * *
439508 AGTATTCGTGTTTGTCTTATTTAGGAGACAAACTTTGAGTCTATCAAAAACGGTGAAAAGAAAAG
385 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAG
* ** *
439573 TTTTTCTTTTGACACCAAAGCTTC
450 CTTTTCTTACGACACCAAAGCATC
** * * *
439597 AATGTCATGTATAGTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATAGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * * * *
439662 TTAAGAGAATCGATACTTCT-TTTATTTAAGCGATGAGCTTTCATTTTAAGTAAAATAGGGCATA
66 TTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * *
439726 GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * * * *
439791 AGTGCGTAATCACAAAATGAGTGAAGATCAATGCTAGAATCCTTGTTTTGGCTCATTTGAGGTAT
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATG-TTTGTCTCATTTGAGGCAC
* * ** * *
439856 GAACTTAGACTTTACAAAAATTGGTGGGGAAAAACCTTTCTTAAGTAACCAAAGCACCAATATCG
258 GAACTTAGACTTTACAAAAATTGGTAGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * *
439921 TGTATCCTAAAGAGAAGACTAAGTTTATGGAGCCTAAT-CGTGAAAAGAATGGGGAATAGTCTGA
323 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTATGA
* * *
439985 GTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAATGGTTG-AAAGAATAG
386 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TGAAAAGAAAAG
* *
440049 CTTTTC-TAGCAACACCAAAGCAGC
450 CTTTTCTTA-CGACACCAAAGCATC
* * * ** *
440073 AATGTCAAGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAGGGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * *
440138 TTACGAGAATCAATGCTTGTC-TTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
** *
440202 AAAAGATTTCCACATAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATT
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATA
* * * *
440267 GTGCCTAATCAC-AAATGAATGAAAATCAATACTAAAATCCATGTTTGGCTCATTTGAGGCACAA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * *
440331 ACTTAGACTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTAGCAAAACCAAAGAATCAATGTCAT
260 ACTTAGACTTTACAAAAATTGGTAGGGA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * ** ** * * *
440396 GCATCTTTGTGAGAAGACTGCGTTTATGCTGCCTAATCTC-GAAAAGAATGCGGATTAGTATGAC
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CATAAAAGAATG-GGATTAGTATGAG
* * *
440460 TATTCATGCTTGTCTTATTTAAGAGGCAAACTTTGATTCT-TCTAAAA-GGATGAAAAGAAAAGC
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TGAAAAGAAAAGC
* * * *
440523 CTTTCTTGCGACACCAAAGCGTT
451 TTTTCTTACGACACCAAAGCATC
* * * * ** * *
440546 AATTTCGTGTATCCTAATGAAGGGAATGTGTTTTAGGCTCAAAATTCAGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * * * *
440611 CTACGAGAGTAGATGCTTATCTTATTTAAGAGATGAACTTTGATTTTAGGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* **
440676 AAAAAATTTCCTTGCAAAA-AGAAATCATCAATATCATTTATCCT-ATGAGGAGAATGTGCTTAT
131 AAAAGATTTCCACGCAAAAGA-AAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * * * *
440739 AGTGACTAACCAC-AAATAAATGAAAATCAAAACTAGAAACCATGTTTGTCTCATTTGAAGCACG
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
440803 AACTTAGA-TTTAATAAAAATTTGG--GGGAAAAAACCTTTCTTAG-GAAACCAAAGCACCAATA
259 AACTTAGACTTT-ACAAAAA-TTGGTAGGG-AAAAGCCTTTCTT-GCGAAACCAAAGCATCAATA
* * * * *
440864 TCGTGTAGCCTAATGAGAAGACTAAGTTTATGGTCCCTAAT-CATGAAAAGAATGGGGAATAATA
320 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTA
* *** * * *
440928 TGAGTATTCATGTTTATCTTATTTAAGAGGTGAACTTTGATTCTATCAAAAACAGTGGAATGAAA
383 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAA
*
440993 A-CTTTTC-TA-GCAGCACCAAAGCATT
448 AGCTTTTCTTACG-A-CACCAAAGCATC
* * * * * * * * *
441018 AATGTCAAGTATCCTAATGAAAGGATTGTGTTTTTGGTTCCTAATCTTAAAAAAAAATGGGGGCT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCT-GAAAAGAATGGAGACT
* * * * * * * *
441083 GTCATGGGAATTGA--CATGTCTTGTTTAATGGATGAACTTTGATTTTAAGGAAAATCGGGCAAA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * *
441146 -ATAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATTCTAATGAGGAGAATGTGTTCA
130 GA-AAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-A
* *
441210 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCAAGTTTGGCTCATTTGAGGCAC
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* ** *
441275 GAACTTAGACTTTGCAAAAATTGGT-GGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATAT
258 GAACTTAGACTTTACAAAAATTGGTAGGG--AAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
441339 CGTATATCCTAATGAGAAGACTAAGTTTATGGTTCCTAAT-CGTGAAAAGAATAGGGA--AG-AG
321 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTA-
** * *
441400 TGTTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAA
383 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAA
* * *
441465 AGATTTTCTTGCGATACCAAAGCATC
448 AGCTTTTCTTACGACACCAAAGCATC
* * * * *
441491 AATGTCTTGTATACTAATAAAGGGAATGT-TTTTTTGTT-CCAATCCTAAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * *
441554 TTATGTGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* ** *
441619 AAAAGGTTTCCACGTGAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTATA
* * * * ** *
441684 GTGCGTGATCACAAAAT-AAGTGAAGATCAATACTAGAATTCTTGTTTCACCCATTTGAGGCACG
195 GTGCCTAATCACAAAATGAA-TGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
** * * ** * *
441748 AACTTAGACTTTACAAAAATTCATAGGAAAAAACCTTTCTT-AAATAACCGAAGCACCAATATCG
259 AACTTAGACTTTACAAAAATTGGTAGGGAAAAGCCTTTCTTGCGA-AACCAAAGCATCAATATCG
* * * * * * * * *
441812 TGTATCCTAA-AATGATGACTAAGTTTATGGAGTCTAA-ACGTGAAAAGAATCAGGAATAGTATG
323 TGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTATG
* * ** * *
441875 CGTATTCATGTTTTTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
385 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAG
441940 CTTTTC-TAGCGACACCAAAGCATC
450 CTTTTCTTA-CGACACCAAAGCATC
* * * * *
441964 AATGTCAAGTATCCTAGTGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGA-ACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
442028 TTACGAGAATCAAAGCTTGTC-TTTTTAAAGGACGAACTTTGATTTTAAGGAAAAT-GGAGCAAA
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAA
* *
442091 GAAAATG-TTTCCACGTAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTCA
130 GAAAA-GATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-A
* * * * *
442155 TAGTGCCTAATCACAAAATGAATGACGATCAATACTAGAATCCAAGTTTGGCTTATTTGAGGGAC
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * *
442220 AAACTTAGACTTTACAAAAATTGGT-GCGAAGAAAGCCTTTCTAGCAAAATCAAAGCATTAATAT
258 GAACTTAGACTTTACAAAAATTGGTAG-GGA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* ** *
442284 CGTGCATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTAC
321 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTAT
* * * *
442348 GACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAA
384 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAA
* * *
442413 GCCTTTCTTGCGACACCAAAGCATT
449 GCTTTTCTTACGACACCAAAGCATC
* * * *
442438 AATGTCGTGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
442503 TTACGAGAATTGGTGCTTGTCTTATTTAAGGGATGAACTTAGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* *
442568 AAAATATTTCCACGCAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATA
* *
442633 GTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
442698 ACTAAGATTTTACAAAAATTTGTAGGGAAAATGCCTATCTTGCGAAACCAAAGCATCAATATTC-
260 ACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATA-TCG
* * * *
442762 AGTATCCTAATGAGAAGACTATGTTTAGGGTTCCTAATCCATAAAAGAATAGGGATTACTATGAG
323 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAAT-GGGATTAGTATGAG
* * * *
442827 TATTCATGTTTGTCTAATTTAAGAGACAAACTTTGACTCTATAAAAAACGGTGGAAAGAAAAGCT
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCT
*
442892 TTTCTTGCGACACCAAAGCATC
452 TTTCTTACGACACCAAAGCATC
* * * * *
442914 AATGTCATGTACCCTAATGAGGGGAATGTGTTTTAGGTTCTCAATCCTGTAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * * ***
442979 TTACGAGAATCGGTGCTTATCTTATTTAAGAGATGAACTTTGATTTTAAGTAAAATAAAACAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * ** * *
443044 AAAAGATTTTCATGCAAAAGAAACCCGA-CAATATCATTTATCCTAATGAGGAGAAAGCGTTTAT
131 AAAAGATTTCCACGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * * * *
443108 AGTGCATAATCACAAAAAGATTGAAGATTAATACAAGAATCCTTGTTTGGCTCATTTGAGGCACG
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* *
443173 AGCTTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTCTTGCGAAATCAAAGCATCAATATCG
259 AACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * ** ** * *
443238 TTTATCCTAAAGTGAAGGTTATG-TTATGGTGCCTAATCCCGAAAAGAATGGGAATTAGTTTGAC
323 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGG-ATTAGTATGAG
* *
443302 TATTCATGTTTGTCCTT-TTTAAAAGGCAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGC
387 TATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGC
* * * *
443366 CTTTCTTGCAACAACAAAGCATC
451 TTTTCTTACGACACCAAAGCATC
* * *
443389 AATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * *
443454 TTACGAGAATCGATGCTTATCTTTTTTAGGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
443519 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTCATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATA
* * * *
443584 GTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAATCCATGTTTATCTCTTTTGAGGCACAA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
443649 ACTAAGGCTTTACAAAAATTTGTAGGGAAAATGCCTTTCTTGCGAAACTAAAGCATCAATATCGT
260 ACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* ** * *
443714 GTATTCTAATGAGAAGACTATGTTTATGGTTTCTAATCCATAAAGGAATGGAGATTACTATGAGT
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGG-GATTAGTATGAGT
* * * *
443779 ATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCCATCAAAAACGGTGGAAAGAAAAGCTT
388 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTT
* **
443844 TCCTTGTGACACCAAAGCATC
453 TTCTTACGACACCAAAGCATC
* * *
443865 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCTCAATCCT-ATAAAGGATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGA-AAAGAATGGAGACT
* * * * * * *
443929 ATTATGAGAATTGATGTTTATCTTATTTAAGAGATGAACTTTGATTTTAAGTAAAATGGGGCAAA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
** * * * *
443994 GAAAAGATTTTAACGCAAAAGAAAACCACCAATATTATTTATCCAAATGAGGAGAATGTGTTTAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * * * * * * *
444059 AATGCGTAATAACAAAATGATTGAAGATTAATACAAGAATACTTGTTTGGCTCATTTGAGGTACG
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
*
444124 AGCTTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCG
259 AACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * ** *
444189 TGTATCCTAAAGTGAAG-GT-TGTGTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTCTGA
323 TGTATCCTAATGAGAAGACTATGT-TTATGGTGCCTAATCCATAAAAGAAT-GGGATTAGTATGA
* * * *
444252 CTATTCATGTTTGTCCTATTT-AGAAGGCAAACTTTCATTCTATCAAAAACGGTGAAAAGAAAAG
386 GTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAG
* *
444316 CCTTTCTTGCGATC-CCAAAGCATC
450 CTTTTCTTACGA-CACCAAAGCATC
* * * * * * *
444340 GATATCGTGTATCCTAACGAAGGGAAAGTGTTTTCGGTTCCCAATCCTGTAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* *
444405 TTATGAGAATCGATGCTTATCTTTTTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* ** *
444470 AAAAGATTTTCACGCAAAAGAAAATTGTCAATATCATTTATCCTAATGAGGAGAATATGTTCATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATA
* * * *
444535 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGCCTCATTTGATGTATGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* ** * ** * ** ** *
444600 ACTTAGAGTTCGCAAAAATTAGTGAGAAAAAAACCTTTCTTAAGAAACCAAAGCGCCATTATCGT
260 ACTTAGACTTTACAAAAATTGGT-AGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * *
444665 CTATCCTAATGAGAAGACTAAGTTTACGGTGCATAAT-CATGAAAAGAATGGGGAATAGTATGAG
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTATGAG
* * * *
444729 TATTCATGTTTGTCTTATTTCAGAGACTAACTTTGATTCTATCAAAAATGGTGAAAAG-AAATCT
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCT
*
444793 TTTC-TAGCTG-CATCAAAGCATC
452 TTTCTTA-C-GACACCAAAGCATC
* * * * *
444815 AATGTCAAGTGTCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATGAAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * *
444880 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGCTTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* *
444945 AAAAGATTTTCGCA-G-AAAAGAAAATCATCAATATCATTTATTCTAAAGAGGAGAATGTGTTCA
131 AAAAGA-TTTC-CACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-A
* *
445008 TAGTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCTTTTGAGGCAC
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
445073 GAACTAAGACTTTACGAAAATTTGTAAGGAAAATGCCTTTCTTGCGAAACTAAAGCATCAATATC
258 GAACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATC
* * ** *
445138 ATGTATCCTAGTGAGAAGACTATGTTTATGGTTTCTAATCCATAAAAGAATGGGATTACTATGAG
322 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGATTAGTATGAG
* * * * * *
445203 TATTCATGTTTGTCTTTTTTAAGAGATAAACATTGACTCTATCAAAAATGGTGGAAAGAAAAGCT
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCT
** *
445268 TTTCTTGTGACACTAAAGCATC
452 TTTCTTACGACACCAAAGCATC
* ** * *
445290 AATGTCATGTATCCTATTGAAACGAATGTGTTTTAGGTTCTCAATCCTGTAAAAG-ATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTG-AAAAGAATGGAGACT
* * * * **
445354 ATTATAAGAATCGATGCTTATCTTATTTAAGAGATGAACTTTGATTTTAAATAAAAT-GGTGCAA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAA
* ** * * * *
445418 AGAAAATATTTTAACGCAAAAAAAAAACCATCAATATCATTTACCCTAATGAGGAGAATGTTTTT
129 AGAAAAGATTTCCACGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG-TGTT
* * * * * * * * * * *
445483 ATAATGCGTAATCATAAAATGATTGAATATTAA-AATAAGAATCCTTGTTTGGCTCATTTGTGGT
192 ATAGTGCCTAATCACAAAATGAATGAAGATCAATACT-AGAATCCATGTTTGTCTCATTTGAGGC
* * * * *
445547 ACGAGCATAGACTTTATAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAACCAAAGTATCAATA
256 ACGAACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATA
* ** * * * * ** * *
445612 TCATGCGTCCTAAAGTGAA-ATTATGTTTATGGTGCCCAATCCCGAATAGAATGGGGATTAGTTT
320 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAAT-GGGATTAGTAT
* * * * * * *
445676 GACTATTCATATTTGTCCTATTTAAAAGGCAAACTTTGATTCTACCAAAAACAGTGAAAAGAAAA
384 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAA
* * *
445741 GCCTTTT-TTGCGACACGAAAGTATC
449 G-CTTTTCTTACGACACCAAAGCATC
** * * * *
445766 AATGTTGTGTATCCTAATGAAAGGAAAGTGATTTTGGTTCCCAATCCTAAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* ** * * * * *
445831 TTACGAGAATTAATGCTTATCCTTTTGAAGGGATGAACGTTGATTTTAAGGAAAATAGGGTAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
445896 AAAAGATATCCACGCAAAAGAAAATCATCAATATCATTTATCCAAATAAGGAGAATGTGTTCATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATA
* * * * *
445961 GTGCCTAATCACAAAATGAATGAAGATTAATACTAGAATCCATGTTGGTCTCATTTGATGTAAGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
** * ** ** *
446026 ACTTAGACTTCGCAAAAATTAGTGAGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGT
260 ACTTAGACTTTACAAAAATTGGT-AGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
446091 GTATCCTAATGAGAACACTAAGTTTATGGTGCCTAAT-CATGAAAAGAATGGGGAATAGTATGAG
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAT-GGGATTAGTATGAG
** *
446155 TATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGTGAAAAG-AAATCT
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCT
446219 TTTC-TA-GTAGCACCAAAGCATC
452 TTTCTTACG-A-CACCAAAGCATC
* * * * **
446241 AACGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATAAAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* ** *
446306 TAATGAGAATCGACACTTGT-TTTATTTAAGGGATTAACTTTGATTTTAAGGAAAATAGGGCAAA
66 TTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * * * * *
446370 GAAAAGACTTT-CACGCAAAAGAAAATTATCAAGATCATTTATTCTAATAAAGAGAATGTATTCA
130 GAAAAGA-TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-A
* * *
446434 TAGTGCCTAATC-CCAAATGAATGAAGATAAATACTAGAATCCATGTTTGTCTTATTTGAGGCAC
193 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * *
446498 GAACTAAAAATTTACAAAAATTTGTAGGGAAAAAGCCTTTCTTGCGAAGCCAAAGCATCAATTTC
258 GAACTTAGACTTTACAAAAATTGGTAGGG-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
446563 GTGTATCCAAATGCGAAGACTATGTTTATGGTTCTTAATCCATAAAAGAATAGGGATTACTATGA
322 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAAT-GGGATTAGTATGA
* * *
446628 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAGAGAAAAGC
386 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAG-
*
446693 CTTTT-TTGCCG-CACCAAAGCATC
450 CTTTTCTT-ACGACACCAAAGCATC
* ** * *
446716 AATGGCATGTATCCTAATGAAGGGAATGTGTTTGAGGCTCCCAATCCTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * *
446781 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCATAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * *
446846 AAAAGATTTTCACGTAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTTTTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG-TGTTATA
* ** * *
446911 TTGTGTAATCACAAAATGAATGAAGATCAATACTAGAAT-CATTGTTTGGCTCATTTGAGGCAAG
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA-TGTTTGTCTCATTTGAGGCACG
* *
446975 AACTTAGACTTTATAAAAATTGGTA-GGAAGAACGCATCTT-TTGCGAAACCAAAGCATCAATAT
259 AACTTAGACTTTACAAAAATTGGTAGGGAA-AA-GCCT-TTCTTGCGAAACCAAAGCATCAATAT
* * ** * * *
447038 CATGGATCCTTTTGAGAAGACTGTGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTCT
321 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CATAAAAGAAT-GGGATTAGTAT
* * * * * *
447102 GACTATTCATGTTTGTCCTATTTGAA-AGGCAAACTTTGATTTTATTAAAAATGGTGAAAAGAAA
384 GAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAA
* * * * *
447166 AGGC-TTTCTTGCGGCCCCAAAGTATA
448 A-GCTTTTCTTACGACACCAAAGCATC
* * * * *
447192 AATGTCGTGTATCCTAATGAGGGGAAAGTGTTTTTGGTTCCCATTCCTGAAAAAAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * ** *
447257 TAATGAGAATTGATGCTTATCATTTTTAAGGGATGTACTTTGATTTTAAGGGTAATGGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* **
447322 GAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAATTCATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-ATA
* * * * *
447387 GTGCCTAATTACAAAATGAACGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGATGTATGA
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * ** ** *
447452 ACTAAGAGTTTACAAAATTTTGTGAGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGT
260 ACTTAGACTTTACAAAAATTGGT-AGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
447517 CTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAAT-CATGAAAA-AATTGGGGAATAGTATGA
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAA-T-GGGATTAGTATGA
* * ** * * *
447580 GCATTCATTTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGATGGAAAG-AAATC
386 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGC
447644 TTTTC-TA-GCAGCACCAAAGCATC
451 TTTTCTTACG-A-CACCAAAGCATC
* * * **
447667 AATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTTCTCAATCCT-ATAAAGGTTGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGA-AAAGAATGGAGACT
* * * * * * *
447731 ATTACGAGAATCGATGCTTATCTTATTGAAGAGATGAACTTTGATTTTAAGTAAAATGGGGCAAA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
** * *
447796 GAAAAGATTTTAACGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * * * * * *
447861 AATGCGTAATCACAAAATGATTGAAGATTAATACAAGAATCCTTG-TTGGCTCATTTGCGGTACG
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
447925 AGCTTAGACTTTACAAAAATTGGTCGGGAAAATGCCTTTCTTGTGAAACCAAAG-ATCAATGTTG
259 AACTTAGACTTTACAAAAATTGGTAGGGAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCG
* ** ** * *
447989 TGTATCCTAAAGAGAAGGTTATGTTTATGGTGCCTAATCCCGAAAAGAATAGGGATTAGTCTGAC
323 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAAT-GGGATTAGTATGAG
* * * * *
448054 TATTCATGTTTGCCCTATTTAAAAGGCAAACTTTGATTATATCAAAAACGGTGAAAAGAAAAGCT
387 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCT
*
448119 TTTCTTACGGCACCAAAGCATC
452 TTTCTTACGACACCAAAGCATC
* * * *
448141 AATGTCGTGTATCTTAATGAAGGGAAAGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* *
448206 TTATGAGAATCGATGCTTATCTTTTTTAAGGGATGCACTTTGATTTTTAA-GAAAATAGGGCAAA
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCAAA
* * *
448270 AAAAAGATTTCCACGCAAAAGAAAATCATCAATATCTTTTCTCCTAATGAGGAGAATGTGTTCAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-AT
* * * * *
448335 AGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGTACA
194 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * ** ** *
448400 AACTTGGACTATACAAAAAATACT-GGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATC
259 AACTTAGACTTTACAAAAATTGGTAGGG--AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
448464 ATGTATCCTAATGATAACACTAAGTTTATGGTGCCTAAT-CATAAAAAGAATGAGGAATAGTATG
322 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAATG-GGATTAGTATG
** * *
448528 AGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAT
385 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAG
*
448592 CTTTTC-GA-GCAGCACCAAAGCATC
450 CTTTTCTTACG-A-CACCAAAGCATC
* * * * *
448616 AATATCAAGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCTAATTCTGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * *
448681 TTACGAGAATCGATGCTTGT-TTTATTTAAGAGA--AACTTTGATTTTAAGGAAAATAAGGCAAA
66 TTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* *
448743 GAAAAGATTTCCACGCAAAAGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGATCAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTAT
* * * * *
448808 AATGCCTAATCCCAAAA-CAGATGAAGATGAAAACTAGAATCCATGTTTGTCTCATTTGAGGCAC
194 AGTGCCTAATCACAAAATGA-ATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
448872 GAACTAAAAATTTACAAAAATTTGTAGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTC
258 GAACTTAGACTTTACAAAAATTGGTAGGG-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * *** *
448937 GTGTATCCGAATGCGATGACTATGTTTATGGTTTTTAATCCATAAAAGAATGGGAATTACTATGA
322 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGG-ATTAGTATGA
* * * *
449002 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGATGGAAAGAAAAGC
386 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGC
* *
449067 TTTTCTTGCAACACCAAAGCATC
451 TTTTCTTACGACACCAAAGCATC
* * * *
449090 AATGTCATGTATCCTAATGAATGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
449155 TTACGAGAATCGATGCTGGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCATAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
449220 AAAAGATTTTCACGTAAAAAAAAATCATCAATATCATTTATCCTAATGAAGAGATTGTTTTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG-TGTTATA
* * * * *
449285 TTACATAATCACAAAATGAATGAAGATCAATACTAGAAT-CATTGTTTGGCTCATTTGAGGCAAG
195 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA-TGTTTGTCTCATTTGAGGCACG
*
449349 AACTTAGACTTTACAAAAATTGGTA-GGAAGAACACCTCTT-TTGCGAAACCAAAGCATCAATAT
259 AACTTAGACTTTACAAAAATTGGTAGGGAA-AA-GCCT-TTCTTGCGAAACCAAAGCATCAATAT
* * ** ** * * * *
449412 CATGGAT-CTTTTGGAGAAGACTGCGTTTTTGGTGCCTAATCTC-GAAAATAATGGGGATTAGTC
321 CGTGTATCCTAAT-GAGAAGACTATGTTTATGGTGCCTAATC-CATAAAAGAAT-GGGATTAGTA
* * *
449475 TGACTATTCATGTTTGTCCTATTTGAA-AGGCAAACTTTGATTCTATCAAAAACGGTGAAAAGAA
383 TGAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAA
* * *
449539 AAGGC-TTTCTTATGACCCCAAAGTATC
447 AA-GCTTTTCTTACGACACCAAAGCATC
* * * *
449566 AATGTCGTGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCATTACTGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
449631 TAATGAGAATTGATGCTTATCATTTTTAAGGGATGAACTTTGATTTTAAGGGAAATAGGGCAAA-
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
449695 AGAAAGATTTCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGA
131 A-AAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
449745 AGACTTTCTT
Statistics
Matches: 12187, Mismatches: 1972, Indels: 526
0.83 0.13 0.04
Matches are distributed among these distances:
467 27 0.00
468 54 0.00
469 118 0.01
470 203 0.02
471 207 0.02
472 457 0.04
473 1150 0.09
474 1475 0.12
475 3522 0.29
476 4276 0.35
477 685 0.06
478 12 0.00
479 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTATAG
TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
CTTAGACTTTACAAAAATTGGTAGGGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGT
ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATAAAAGAATGGGATTAGTATGAGTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
TTACGACACCAAAGCATC
Found at i:438687 original size:951 final size:949
Alignment explanation
Indices: 434847--449744 Score: 16872
Period size: 951 Copynumber: 15.7 Consensus size: 949
434837 AATCCTAACA
* * *
434847 AATGTCATGTA-CACTAATGAAGGGAATGTGTTTTGGGTTCCCAATCTTAAAAAGAATGGAGACT
1 AATGTCATGTATC-CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACT
* * * *
434911 ATTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTTAGTAAAATAGGGCACA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * *
434976 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTGTCCTAATGAGGAGAGTGTGTTTAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTAT
* * *
435041 -GTTGCTTAAGCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTCG-CTCATTTGAGGCA
195 AG-TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTT-GTCTCATTTGAGGCA
* * * *
435104 CAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACTAAAGCATGAATAG
258 CGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTACGAAACCAAAGCATCAATA-
* * *
435169 T-TTGTATCCTAATGAGAAGACTATGTTTCTGGTGCCTAAT-CATGAAAAGAATCA-GGAATATT
321 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAAT-AGGGAATAGT
* ** *
435231 ATTAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGATGGAAAGAA
385 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * ** *
435296 AAGCTTCTCTAGCGACACCAATGCATCAATGTCAAGTATCCTAATGAAATGAATGTGTTTTTGGT
450 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGT
* * * * * * * * ** *
435361 TCGCAATCTTGAAAAGAATGGGGACCATTATGAGAATTGATGCATGTCTTTTTTAATAGATGAAT
515 TCCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* ** *
435426 TTTGATTTTATGGAAAATAGGGCAAACCAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
580 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATT
* *
435491 TATCCTAATGAGGAGACTGTGCATATAGTGCCTAATCACAAAATGAATGAAGATCAA-AGCTAGA
645 TATCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATA-CTAGA
* * * * * *
435555 AACCATGTTTGTCTCATTTGAGGCAAGAGCTTAGACTTTATAAAAATTGGTAAGG-AAAAGCCTT
708 ATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTT
* * * * *
435619 TCTTGCA-AAACCAAAGCATCAATATCATGTATGCTAATGAGAAGACTATGTTTATAGTACCTAG
772 TCTTG-AGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * * * * * * * * * *
435683 TCTATAAAATAATGGCGATTACTATGAGTCTTCATGCTTGACTTTTTTAAGAGACAAACATCGAC
836 TCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* ** * *
435748 TCTACCAAAAATAGTGAAAAGAAAAGCTTTTCTTACAACACCAAAGCATC
900 TCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * ** *
435798 AATG-CTAGGTATCCTAAAGAAGGGAATGTGTTTTTGGCTCCCAATATTGAAAAGAATGGGGACT
1 AATGTC-ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACT
* * * * * *** *
435862 GTTATGAGAATTGGTGCATGTCTTTGTTTAATGGATGAACTTTGATTTTAAGGAAAATCTAGTAA
65 ATTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * * * *
435927 AGAAAAGATTTCCATGCAAAAGAAAATGATCAACAACATTTATCCT-TTGAAGAGAATGTGCTTA
129 AGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTA
* * * * *
435991 TAGTGCCTAATCACAAAATAAATGAAGATCAATAGTAGAAACCATGTTTGTCTTATTTGAGGCAT
194 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * *
436056 GAGCTTAGACTTCACAAAAATTGGTAGGGAAAAAGCCTTTCTTGCGAAACCAGAGCATCAATATC
259 GAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATC
* * * * * * * *
436121 ATGTATCCTAAGGACAAGACTATGTTTATGGTACCTTATCCAT-AAAAGAA-AGGCATTACTATG
323 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATG
* *
436184 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATC-AAAATGGTGGAAAGAAAAG
388 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
** * * *
436248 CTTTTCTTATGACACCAAGGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC
453 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCC
* * * * * * *
436313 CAATCTTGAAAAGAATAGAGACTGTTATGAGAATTGATGCATGTCCTT-TTTAATGGATGAACTT
518 CAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGT-CTTATTTAAGGGATGAACTT
* * * *
436377 TGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATCTA
582 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTA
* * ** *
436442 CCCTAATGAGAAGAATGTGCTTATAGTGGTTAATCACAAAATGAATGAAGATCAATACTAGAAAC
647 TCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
* * * * * *
436507 CATGTCTGTCTCATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTAAGG-AAAAGCTTTTCT
711 CATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCT
* * *
436571 TGTGAAACCAAAGCATCAATATCTTGTATCCTAAT--G-AGA--A-GTTTATGGTACCTAATCCA
775 TGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-C-
* * * * * * * *
436630 T-AAAAAAATGGTGAATACTATGAGTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGACTCT
838 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * *
436694 ATCAAAAATGGTGGAAAGAAAAGATTTTCTTACGACACCAAAGCATC
903 ATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * ** *
436741 AATGTCAAGTATCCTGATAAAGGGAGTGTGTTTTTGGTTCCCATTATTGAAAA-AACTGGGGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAA-TGGAGACT
* * * * * * * * *
436805 GTTTTGACAATTGATGCATGTCTTTGTTTAATGGATGAACATTGATTTTAAGGAAAATCGGGCAG
65 ATTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * * * *
436870 AGAAAAGATTTTCATGCAAAAAAAAATCATCGATATCATTTATCCTAATAAGGAAAATGTGCTTA
129 AGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTA
* * *
436935 TAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCAC
194 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * *
437000 GAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTAGGAAACCAAAGCATCAATATT
259 GAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTACGAAACCAAAGCATCAATATC
** * * *
437065 GTGTATCCTAAAAAGAAGACTAAGTTTGTGGTGCCTAAT-CATGAAAAGAATTA-GGAAGAGTAT
323 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAA-TAGGGAATAGTAT
** * *
437128 GTTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAA
387 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * *
437193 GCTTTTCTTGCAACACCAAAGCATCTATGTCTTGTATCCTAATGAAGGGAATGTGCTTTT-GGTT
452 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTAGGTT
* * * * * * *
437257 CCTAATCGTGAAAAGAATGCATACTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATAAACT
516 CCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * ** *
437322 TCGATTTTAAGGAAAAGAGGGCAAAGAAAAGGTTTCCACATAAAAAAAAAATCATCAATATCATT
581 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAC-GCAAAAGAAAATCATCAATATCATT
* * * * * *
437387 TATCATAATAAGGAGAATGTGCTTATAGTGCGTAATCAAAAAATGAGTGAAGATCAATACTATAA
645 TATCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
* * *
437452 TCCTTGTTTAGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTCT
709 TCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTT
* * * ** ** *
437517 CTAGCA-AAAGCAAAGCATCAATATCGTGCATTATTTTGAGAAGACTACGTTTATGGTGCCTAAT
773 CTTG-AGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
** * *
437581 CTCGAAAAGAATAAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT
837 CT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
437646 ATATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACGGCACCAATGCATC
901 CTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
437695 AATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * *
437760 TTATGAGAATTGAAGCTTATCTTTTTTGAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAT
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
** * * *
437825 AAAAGATTTCCTTGCAAAAGAAAATCATAAATACCATTTATCCTAATAAGGAGAATGTGCTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
* * * *
437890 GTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAAACCATGATTGTCTCATTTGAGGCATGA
196 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
437955 GCTTAGACTTTACAAAAATTGGTAAGGAAAAAGCCTTTCTTATGAAACCAAAGCATCAATTTCGT
261 ACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGT
* * * * * *
438020 GTATCCTAATGACAAGACTATGTTTATGGTACCTAATCCAT-AAAAGAA-AGGCATTACTGTGAG
325 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATGAG
* * *
438083 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGAAAAGAAAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * * * * *
438148 TTCCTGGCGACACCAAAGTATCAATGTCATGTATACTAATGAAAGGAAAGTGTTTTAGGCTCTCA
455 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCA
* * * * * **
438213 ATCTTGAAAAGAAT-GAGGACTGTTATGAAAATCAATGCTTGTCTTATTTAATAGATGAACTTTG
520 ATCCTGAAAAGAATGGA-GACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
** * * *
438277 ATGTTT-TTGAAAAAAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
584 AT-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTAT
** * * * *
438341 CCTAATGAGGAGAATGTGCTTATAGTGCCTCGTAACAAAATGCATGAAGATTAATACTGGAATCC
648 CCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * * *
438406 ATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTTTT
712 ATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTT
* * * *
438471 AAGAAACCAAAGCACCAATATCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTG
776 GAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-TG
* * * * ** * *
438536 AAAATAAGGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTCTAATTCTAT
840 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * ***
438601 CAAAAATGGTGGAAAGAAAAGCTTTTCCAACGACACCAAAGCATC
905 CAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * *
438646 AATGTCAAGGATCCGAATGAAGGGAATGTGTTTTAGGTTCCCAAACCTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * *
438711 CTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCATAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
438776 AAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTGATGAGGAGAATGTGCTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
* * * * *
438841 GTGCCTAATCAC-AAATGAATGAAAATCATTAATAGAATCCATATTTGTCTCATTTGAGGCATGA
196 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * ** * * *
438905 ACTTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTTTTGTGAAAGCAAAGCATTAATATCAT
261 ACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGT
* * * * * **
438970 ATATCCTAATGGGAAAACTATGTTTATGGTACCTAATCCAT-AAAAGAATAGGGATTACAATGAG
325 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATGAG
** * * *
439034 TATTTGTGTTTGTCTTATTTAAGAGACAAACTTTGAGTCTATCAAAAATGGTGAAAAGAAAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
** *
439099 TTTCTTTTGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCCA
455 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCA
* * * * * * *
439164 ATCCTGAAAAAAATAGAGACTATTAAGAGAAACGGTACTTGTCTTATTTAAGCGAT-AAGCTTTG
520 ATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTG
* * * * * *
439228 ATTTTAAGTAAAATAGGGCATAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCTTTTATC
584 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATC
* * *
439293 CTAATGACGAGAATGTGTTTATAGTGCGTAATCACAAAATGAGTGAAGATCAATACTAGAAT-CA
649 CTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
439357 TTGTTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAA-CCTTTCT
713 -TG-TTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCT
* * * * * *
439421 TAAGTAACCAAAGCACCAATATCGTGTATCCTAAAGAGAAGACTAAGTTTATGGAGCCTAATCGT
775 TGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-T
* * * * * *
439486 GAAAAGAATGGGGAATAGTCTGAGTATTCGTGTTTGTCTTATTTAGGAGACAAACTTTGAGTCTA
839 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* ** *
439551 TCAAAAACGGTGAAAAGAAAAGTTTTTCTTTTGACACCAAAGCTTC
904 TCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
** * * *
439597 AATGTCATGTATAGTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATAGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * * * *
439662 TTAAGAGAATCGATACTTCT-TTTATTTAAGCGATGAGCTTTCATTTTAAGTAAAATAGGGCATA
66 TTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * * *
439726 GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTAT
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTAT
* * * * * * *
439791 AGTGCGTAATCACAAAATGAGTGAAGATCAATGCTAGAATCCTTGTTTTGGCTCATTTGAGGTAT
195 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATG-TTTGTCTCATTTGAGGCAC
* * *
439856 GAACTTAGACTTTACAAAAATTGGTGGGGAAAAA-CCTTTCTTAAGTAACCAAAGCACCAATATC
259 GAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATC
* * * * * *
439920 GTGTATCCTAAAGAGAAGACTAAGTTTATGGAGCCTAAT-CGTGAAAAGAATGGGGAATAGTCTG
323 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATG
* * * *
439984 AGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAATGGTTGAAAGAATAG
388 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * *
440049 CTTTTCTAGCAACACCAAAGCAGCAATGTCAAGTATCTTAATGAAGGGAATGTGTTTTTGGTTCC
453 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCC
* ** * *
440114 CAATCTTGAAGGGAATGGAGACTGTTACGAGAATCAATGCTTGTCTT-TTTAAGGGATGAACTTT
518 CAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* **
440178 GATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCACATAAAAGAAAATCATCAATATCATTTAT
583 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTAT
* * *
440243 CCTAATGAGGAGAATGTGTTCATTGTGCCTAATCAC-AAATGAATGAAAATCAATACTAAAATCC
648 CCTAATGAGGAGAATGTGTT-ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * * *
440307 ATGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTA
712 ATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTT
* * * * * ** ** *
440372 GCA-AAACCAAAGAATCAATGTCATGCATCTTTGTGAGAAGACTGCGTTTATGCTGCCTAATCTC
776 G-AGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCT-
* * *
440436 GAAAAGAATGCGGATTAGTATGACTATTCATGCTTGTCTTATTTAAGAGGCAAACTTTGATTCT-
839 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * *
440500 TCTAAAA-GGATGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCGTT
904 TCAAAAACGG-TGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * ** * *
440546 AATTTCGTGTATCCTAATGAAGGGAATGTGTTTTAGGCTCAAAATTCAGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * * * *
440611 CTACGAGAGTAGATGCTTATCTTATTTAAGAGATGAACTTTGATTTTAGGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* **
440676 AAAAAATTTCCTTGCAAAA-AGAAATCATCAATATCATTTATCCT-ATGAGGAGAATGTGCTTAT
131 AAAAGATTTCCACGCAAAAGA-AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTAT
* * * * * * *
440739 AGTGACTAACCAC-AAATAAATGAAAATCAAAACTAGAAACCATGTTTGTCTCATTTGAAGCACG
195 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * *
440803 AACTTAGA-TTTAATAAAAATTTGG-GGGAAAAAACCTTTCTTAGGAAACCAAAGCACCAATATC
260 AACTTAGACTTT-ACAAAAA-TTGGTGGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATC
* * * * *
440866 GTGTAGCCTAATGAGAAGACTAAGTTTATGGTCCCTAAT-CATGAAAAGAATGGGGAATAATATG
323 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATG
* *** * *
440930 AGTATTCATGTTTATCTTATTTAAGAGGTGAACTTTGATTCTATCAAAAACAGTGGAATGAAAA-
388 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * *
440994 CTTTTCTAGC-AGCACCAAAGCATTAATGTCAAGTATCCTAATGAAAGGATTGTGTTTTTGGTTC
453 CTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTC
* * * * * * * * * * * * * *
441058 CTAATCTTAAAAAAAAATGGGGGCTGTCATGGGAATTGA--CATGTCTTGTTTAATGGATGAACT
517 CCAATCCT-GAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * *
441121 TTGATTTTAAGGAAAATCGGGCAAA-ATAAAGATTTCCATGCAAAAGAAAATCATCAATATTATT
581 TTGATTTTAAGGAAAATAGGGCAAAGA-AAAGATTTCCACGCAAAAGAAAATCATCAATATCATT
*
441185 TATTCTAATGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
645 TATCCTAATGAGGAGAATGTGTT-ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
* *
441250 TCCAAGTTTGGCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTT
709 TCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTT
* * * * *
441315 CTTAAGAAACCAAAGCACCAATATCGTATATCCTAATGAGAAGACTAAGTTTATGGTTCCTAATC
773 CTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* **
441380 GTGAAAAGAATAGGGA--AG-AGTGTTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
838 -TGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
441442 CTATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCGATACCAAAGCATC
901 CTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
441491 AATGTCTTGTATACTAATAAAGGGAATGT-TTTTTTGTT-CCAATCCTAAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * *
441554 TTATGTGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* ** * *
441619 AAAAGGTTTCCACGTGAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
* * * * ** *
441684 GTGCGTGATCACAAAAT-AAGTGAAGATCAATACTAGAATTCTTGTTTCACCCATTTGAGGCACG
196 GTGCCTAATCACAAAATGAA-TGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
** * * * * *
441748 AACTTAGACTTTACAAAAATTCATAGGAAAAAACCTTTCTTA-AATAACCGAAGCACCAATATCG
260 AACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTACGA-AACCAAAGCATCAATATCG
* * * * * * *
441812 TGTATCCTAA-AATGATGACTAAGTTTATGGAGTCTAA-ACGTGAAAAGAATCA-GGAATAGTAT
324 TGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAAT-AGGGAATAGTAT
* * ** *
441874 GCGTATTCATGTTTTTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGTGGAAGGAAAA
387 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * * * *
441939 GCTTTTCTAGCGACACCAAAGCATCAATGTCAAGTATCCTAGTGAAGGGAAAGTGTTTTTGGTTC
452 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTC
* * * * * *
442004 CCAATCTTGAAAGGAATGGA-ACTATTACGAGAATCAAAGCTTGTCTT-TTTAAAGGACGAACTT
517 CCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
*
442067 TGATTTTAAGGAAAAT-GGAGCAAAGAAAATG-TTTCCACGTAAAAGAAAATCATCAATATCATT
582 TGATTTTAAGGAAAATAGG-GCAAAGAAAA-GATTTCCACGCAAAAGAAAATCATCAATATCATT
* *
442130 TATCCTAATGAAGAGAATGTGTTCATAGTGCCTAATCACAAAATGAATGACGATCAATACTAGAA
645 TATCCTAATGAGGAGAATGTGTT-ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
* * * * *
442195 TCCAAGTTTGGCTTATTTGAGGGACAAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTT
709 TCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTT
* * * * **
442260 CTAGCA-AAATCAAAGCATTAATATCGTGCATCCTTGTGAGAAGACTATGTTTATGGTGCCTAAT
773 CTTG-AGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * *
442324 CCTGAAAAGAATGGGGATTAGTACGACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATT
837 -CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
442389 CTATCAAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATT
901 CTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
442438 AATGTCGTGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
442503 TTACGAGAATTGGTGCTTGTCTTATTTAAGGGATGAACTTAGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* *
442568 AAAATATTTCCACGCAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTCAT
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-AT
* *
442632 AGTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCATG
195 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * *
442697 AACTAAGATTTTACAAAAATTTGTAGGGAAAATGCCTATCTTGCGAAACCAAAGCATCAATATTC
260 AACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATA-TC
* * * * *
442762 -AGTATCCTAATGAGAAGACTATGTTTAGGGTTCCTAATCCAT-AAAAGAATAGGGATTACTATG
323 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATG
* * *
442825 AGTATTCATGTTTGTCTAATTTAAGAGACAAACTTTGACTCTATAAAAAACGGTGGAAAGAAAAG
388 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * *
442890 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAATGAGGGGAATGTGTTTTAGGTTCT
453 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCC
* * * *
442955 CAATCCTGTAAAGAATGGAGACTATTACGAGAATCGGTGCTTATCTTATTTAAGAGATGAACTTT
518 CAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* *** * * **
443020 GATTTTAAGTAAAATAAAACAAAGAAAAGATTTTCATGCAAAAGAAACCCGA-CAATATCATTTA
583 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATC-ATCAATATCATTTA
* * * * * * *
443084 TCCTAATGAGGAGAAAGCGTTTATAGTGCATAATCACAAAAAGATTGAAGATTAATACAAGAATC
647 TCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
* * *
443149 CTTGTTTGGCTCATTTGAGGCACGAGCTTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTCT
711 CATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCT
* * * * * ** *
443214 TGCGAAATCAAAGCATCAATATCGTTTATCCTAAAGTGAAGGTTATG-TTATGGTGCCTAATCCC
775 TGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CT
* * * *
443278 GAAAAGAATGGGAATTAGTTTGACTATTCATGTTTGTCCTT-TTTAAAAGGCAAACTTTGATTCT
839 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCT
* * *
443342 ATCAAAAACGGTGAAAAGAAAAGCCTTTCTTGCAACAACAAAGCATC
903 ATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
443389 AATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * *
443454 TTACGAGAATCGATGCTTATCTTTTTTAGGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
443519 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATG-TTCAT
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-AT
* * * *
443583 AGTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAATCCATGTTTATCTCTTTTGAGGCACA
195 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * *
443648 AACTAAGGCTTTACAAAAATTTGTAGGGAAAATGCCTTTCTTGCGAAACTAAAGCATCAATATCG
260 AACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCG
* ** * * *
443713 TGTATTCTAATGAGAAGACTATGTTTATGGTTTCTAATCCAT-AAAGGAAT-GGAGATTACTATG
324 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGG-GAATAGTATG
* * *
443776 AGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCCATCAAAAACGGTGGAAAGAAAAG
388 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * *
443841 CTTTCCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCT
453 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCC
* * * * * *
443906 CAATCCT-ATAAAGGATGGAGACTATTATGAGAATTGATGTTTATCTTATTTAAGAGATGAACTT
518 CAATCCTGA-AAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * ** * * *
443970 TGATTTTAAGTAAAATGGGGCAAAGAAAAGATTTTAACGCAAAAGAAAACCACCAATATTATTTA
582 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTA
* * * * * * * *
444035 TCCAAATGAGGAGAATGTGTTTATAATGCGTAATAACAAAATGATTGAAGATTAATACAAGAATA
647 TCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
* * * *
444100 CTTGTTTGGCTCATTTGAGGTACGAGCTTAGACTTTACAAAAATTGGTAGGGAAAATGCCTTTCT
711 CATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCT
* * * *
444165 TGCGAAACCAAAGCATCAATATCGTGTATCCTAAAGTGAAG-GT-TGTGTTATGGTGCCTAATCC
775 TGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGT-TTATGGTGCCTAAT-C
* * * * *
444228 CGAAAAGAATGGGGATTAGTCTGACTATTCATGTTTGTCCTATTT-AGAAGGCAAACTTTCATTC
838 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTC
*
444292 TATCAAAAACGGTGAAAAGAAAAGCCTTTCTTGCGATC-CCAAAGCATC
902 TATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATC
* * * * * * *
444340 GATATCGTGTATCCTAACGAAGGGAAAGTGTTTTCGGTTCCCAATCCTGTAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* *
444405 TTATGAGAATCGATGCTTATCTTTTTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* ** *
444470 AAAAGATTTTCACGCAAAAGAAAATTGTCAATATCATTTATCCTAATGAGGAGAATATG-TTCAT
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-AT
* * * *
444534 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGCCTCATTTGATGTATG
195 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* ** * * * * ** *
444599 AACTTAGAGTTCGCAAAAATTAGTGAGAAAAAAACCTTTCTTAAGAAACCAAAGCGCCATTATCG
260 AACTTAGACTTTACAAAAATTGGTG-GGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCG
* * * * *
444664 TCTATCCTAATGAGAAGACTAAGTTTACGGTGCATAAT-CATGAAAAGAATGGGGAATAGTATGA
324 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATGA
* * * * *
444728 GTATTCATGTTTGTCTTATTTCAGAGACTAACTTTGATTCTATCAAAAATGGTGAAAAG-AAATC
389 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * *
444792 TTTTCTAGCTG-CATCAAAGCATCAATGTCAAGTGTCCTAATGAAGGGAATGTGTTTTTGGTTCC
454 TTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCC
* * * *
444856 TAATCCTAAAAAGAATGAAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTT
518 CAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
*
444921 GCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGCA-G-AAAAGAAAATCATCAATATCATTT
583 GATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTC-CACGCAAAAGAAAATCATCAATATCATTT
* * *
444984 ATTCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCCCAAAATGAATGAAGATCAATACTAGAAT
646 ATCCTAATGAGGAGAATGTGTT-ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAAT
* * * * * * *
445049 CCATGTTTGTCTCTTTTGAGGCACGAACTAAGACTTTACGAAAATTTGTAAGGAAAATGCCTTTC
710 CCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTC
* * * * **
445114 TTGCGAAACTAAAGCATCAATATCATGTATCCTAGTGAGAAGACTATGTTTATGGTTTCTAATCC
774 TTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-C
* * * * * *
445179 AT-AAAAGAAT-GGGATTACTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACATTGACTC
838 -TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
445242 TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACTAAAGCATC
902 TATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* ** * *
445290 AATGTCATGTATCCTATTGAAACGAATGTGTTTTAGGTTCTCAATCCTGTAAAAG-ATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTG-AAAAGAATGGAGACT
* * * * **
445354 ATTATAAGAATCGATGCTTATCTTATTTAAGAGATGAACTTTGATTTTAAATAAAAT-GGTGCAA
65 ATTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAA
* ** * * * **
445418 AGAAAATATTTTAACGCAAAAAAAAAACCATCAATATCATTTACCCTAATGAGGAGAATGTTTTT
129 AGAAAAGATTTCCACGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT
* * * * * * * * * * *
445483 ATAATGCGTAATCATAAAATGATTGAATATTAA-AATAAGAATCCTTGTTTGGCTCATTTGTGGT
193 ATAGTGCCTAATCACAAAATGAATGAAGATCAATACT-AGAATCCATGTTTGTCTCATTTGAGGC
* * * * * *
445547 ACGAGCATAGACTTTATAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAACCAAAGTATCAATA
257 ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTACGAAACCAAAGCATCAATA
* ** * * * * * * * * *
445612 TCATGCGTCCTAAAGTGAA-ATTATGTTTATGGTGCCCAATCC-CGAATAGAATGGGGATTAGTT
321 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTA
* * * * * * * *
445675 TGACTATTCATATTTGTCCTATTTAAAAGGCAAACTTTGATTCTACCAAAAACAGTGAAAAGAAA
386 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * ** * *
445740 AGCCTTTT-TTGCGACACGAAAGTATCAATGTTGTGTATCCTAATGAAAGGAAAGTGATTTT-GG
451 AG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTAGG
* ** * *
445803 TTCCCAATCCTAAAAAGAATGGAGACTATTACGAGAATTAATGCTTATCCTT-TTGAAGGGATGA
514 TTCCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGT-CTTATTTAAGGGATGA
* * *
445867 ACGTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATATCCACGCAAAAGAAAATCATCAATATCA
578 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCA
* * *
445932 TTTATCCAAATAAGGAGAATGTGTTCATAGTGCCTAATCACAAAATGAATGAAGATTAATACTAG
643 TTTATCCTAATGAGGAGAATGTGTT-ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAG
* * * ** * *
445997 AATCCATG-TTGGTCTCATTTGATGTAAGAACTTAGACTTCGCAAAAATTAGTGAGAAAAAAGCC
707 AATCCATGTTTGG-CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAAAAAGCC
* * * *
446061 TTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAACACTAAGTTTATGGTGCCTA
770 TTTCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * **
446126 ATCATGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGA
835 ATC-TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
446191 TTCTATCAAAAACGGTGAAAAG-AAATCTTTTCTAG-TAGCACCAAAGCATC
899 TTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATC
* * * * **
446241 AACGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATAAAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* ** *
446306 TAATGAGAATCGACACTTGT-TTTATTTAAGGGATTAACTTTGATTTTAAGGAAAATAGGGCAAA
66 TTATGAGAATCGATGCTTGTCTTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * * * * *
446370 GAAAAGACTTT-CACGCAAAAGAAAATTATCAAGATCATTTATTCTAATAAAGAGAATGT-ATTC
130 GAAAAGA-TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-
* * *
446433 ATAGTGCCTAATC-CCAAATGAATGAAGATAAATACTAGAATCCATGTTTGTCTTATTTGAGGCA
193 ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * * *
446497 CGAACTAAAAATTTACAAAAATTTGTAGGGAAAAAGCCTTTCTTGCGAAGCCAAAGCATCAATTT
258 CGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATAT
* * * * * *
446562 CGTGTATCCAAATGCGAAGACTATGTTTATGGTTCTTAATCCAT-AAAAGAATAGGGATTACTAT
322 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTAT
* *
446626 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAGAGAAAA
387 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * *
446691 GCCTTTT-TTGCCG-CACCAAAGCATCAATGGCATGTATCCTAATGAAGGGAATGTGTTTGAGGC
452 G-CTTTTCTTG-CGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGT
*
446754 TCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
515 TCCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * *
446819 TTTGATTTTAAGTAAAATAGGGCATAGAAAAGATTTTCACGTAAAAGAAAATCATCAATATCATT
580 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATT
* * * **
446884 TATCCTAATGAAGAGAATGTTTTTATATTGTGTAATCACAAAATGAATGAAGATCAATACTAGAA
645 TATCCTAATGAGGAGAATG-TGTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
* * * * *
446949 T-CATTGTTTGGCTCATTTGAGGCAAGAACTTAGACTTTATAAAAATTGGTAGGAAGAACGCATC
709 TCCA-TGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCT-
* * * ** *
447013 TT-TTGCGAAACCAAAGCATCAATATCATGGATCCTTTTGAGAAGACTGTGTTTATGGTGCCTAA
771 TTCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * *
447077 TCTCGAAAAGAATGGGGATTAGTCTGACTATTCATGTTTGTCCTATTTGAA-AGGCAAACTTTGA
836 TCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGA
* * * * * * *
447141 TTTTATTAAAAATGGTGAAAAGAAAAGGC-TTTCTTGCGGCCCCAAAGTATA
899 TTCTATCAAAAACGGTGAAAAGAAAA-GCTTTTCTTGCGACACCAAAGCATC
* * * * *
447192 AATGTCGTGTATCCTAATGAGGGGAAAGTGTTTTTGGTTCCCATTCCTGAAAAAAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * * ** *
447257 TAATGAGAATTGATGCTTATCATTTTTAAGGGATGTACTTTGATTTTAAGGGTAATGGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* **
447322 GAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG-AATTCAT
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-AT
* * * * *
447386 AGTGCCTAATTACAAAATGAACGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGATGTATG
195 AGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * * *
447451 AACTAAGAGTTTACAAAATTTTGTGAGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCG
260 AACTTAGACTTTACAAAAATTGGTG-GGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCG
* * *
447516 TCTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAAT-CATGAAAA-AATTGGGGAATAGTATG
324 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAA-TAGGGAATAGTATG
* * ** * *
447579 AGCATTCATTTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGATGGAAAG-AAAT
388 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* *
447643 CTTTTCTAGC-AGCACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTTC
453 CTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTC
* ** * * *
447707 TCAATCCT-ATAAAGGTTGGAGACTATTACGAGAATCGATGCTTATCTTATTGAAGAGATGAACT
517 CCAATCCTGA-AAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * ** *
447771 TTGATTTTAAGTAAAATGGGGCAAAGAAAAGATTTTAACGCAAAAGAAAACCATCAATATCATTT
581 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTT
* * * * * *
447836 ATCCTAATGAGGAAAATGTGTTTATAATGCGTAATCACAAAATGATTGAAGATTAATACAAGAAT
646 ATCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAAT
* * * * *
447901 CCTTG-TTGGCTCATTTGCGGTACGAGCTTAGACTTTACAAAAATTGGTCGGGAAAATGCCTTTC
710 CCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTC
* * * * **
447965 TTGTGAAACCAAAG-ATCAATGTTGTGTATCCTAAAGAGAAGGTTATGTTTATGGTGCCTAATCC
774 TTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-C
* * * * * * * *
448029 CGAAAAGAATAGGGATTAGTCTGACTATTCATGTTTGCCCTATTTAAAAGGCAAACTTTGATTAT
838 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
448094 ATCAAAAACGGTGAAAAGAAAAGCTTTTCTTACGGCACCAAAGCATC
903 ATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
448141 AATGTCGTGTATCTTAATGAAGGGAAAGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* *
448206 TTATGAGAATCGATGCTTATCTTTTTTAAGGGATGCACTTTGATTTTTAA-GAAAATAGGGCAAA
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCAAA
* * *
448270 AAAAAGATTTCCACGCAAAAGAAAATCATCAATATCTTTTCTCCTAATGAGGAGAATGTG-TTCA
130 GAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-A
* * * *
448334 TAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGTAC
194 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * ** * *
448399 AAACTTGGACTATACAAAAAATACTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATC
259 GAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTACGAAACCAAAGCATCAATATC
* * * * *
448464 ATGTATCCTAATGATAACACTAAGTTTATGGTGCCTAAT-CATAAAAAGAAT-GAGGAATAGTAT
323 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAG-GGAATAGTAT
**
448527 GAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGTGGAAAG-AAA
387 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* ** * *
448591 TCTTTTCGAGC-AGCACCAAAGCATCAATATCAAGTATCCTAATGAAGGGAATGTGTTTTTA-GT
452 GCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTAGGT
* * * *
448654 TCCTAATTCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTTTTATTTAAGAGA--AAC
515 TCCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* *
448717 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCACGCAAAAGAAAATTATCAATATCATT
580 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATT
* * * * * *
448782 TATCCTAATGAGGAGAATGTGATCATAATGCCTAATCCCAAAA-CAGATGAAGATGAAAACTAGA
645 TATCCTAATGAGGAGAATGTG-TTATAGTGCCTAATCACAAAATGA-ATGAAGATCAATACTAGA
* * * * *
448846 ATCCATGTTTGTCTCATTTGAGGCACGAACTAAAAATTTACAAAAATTTGTAGGGAAAAAGCCTT
708 ATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTT
* * * * * ***
448911 TCTTGCGAAACCAAAGCATCAATTTCGTGTATCCGAATGCGATGACTATGTTTATGGTTTTTAAT
772 TCTTGAGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
448976 CCAT-AAAAGAATGGGAATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAC
837 -C-TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
449040 TCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATC
900 TCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
449090 AATGTCATGTATCCTAATGAATGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
* * * * *
449155 TTACGAGAATCGATGCTGGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCATAG
66 TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * **
449220 AAAAGATTTTCACGTAAAAAAAAATCATCAATATCATTTATCCTAATGAAGAGATTGTTTTTATA
131 AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
* * * * *
449285 TTACATAATCACAAAATGAATGAAGATCAATACTAGAAT-CATTGTTTGGCTCATTTGAGGCAAG
196 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA-TGTTTGTCTCATTTGAGGCACG
* *
449349 AACTTAGACTTTACAAAAATTGGTAGGAAGAACA-CCTCTT-TTGCGAAACCAAAGCATCAATAT
260 AACTTAGACTTTACAAAAATTGGTGGGAA-AA-AGCCT-TTCTTACGAAACCAAAGCATCAATAT
* * ** ** * * * *
449412 CATGGAT-CTTTTGGAGAAGACTGCGTTTTTGGTGCCTAAT-C-TCGAAAATAATGGGGATTAGT
322 CGTGTATCCTAAT-GAGAAGACTATGTTTATGGTGCCTAATCCAT-GAAAAGAATAGGGAATAGT
* * * * *
449474 CTGACTATTCATGTTTGTCCTATTTGAA-AGGCAAACTTTGATTCTATCAAAAACGGTGAAAAGA
385 ATGAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
** * * * * *
449538 AAAGGC-TTTCTTATGACCCCAAAGTATCAATGTCGTGTATCCTAATGAAGGGAAAGTGTTTTTG
449 AAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * * * *
449602 GTTCCCATTACTGAAAAGAATGGAGACTATAATGAGAATTGATGCTTATCATT-TTTAAGGGATG
513 GTTCCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTC-TTATTTAAGGGATG
* *
449666 AACTTTGATTTTAAGGGAAATAGGGCAAA-AGAAAGATTTCCACACAAAAGAAAATCATCAATAT
577 AACTTTGATTTTAAGGAAAATAGGGCAAAGA-AAAGATTTCCACGCAAAAGAAAATCATCAATAT
449730 CATTTATCCTAATGA
641 CATTTATCCTAATGA
449745 AGACTTTCTT
Statistics
Matches: 11936, Mismatches: 1779, Indels: 463
0.84 0.13 0.03
Matches are distributed among these distances:
942 2 0.00
943 375 0.03
944 270 0.02
945 752 0.06
946 569 0.05
947 382 0.03
948 163 0.01
949 2016 0.17
950 1885 0.16
951 3881 0.33
952 1143 0.10
953 308 0.03
954 188 0.02
955 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (949 bp):
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
TTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTG
TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCATGAAAAGAATAGGGAATAGTATGAGT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAA
TCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGT
TTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGAGAA
ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTGAAAAGA
ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
CGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
Found at i:442470 original size:159 final size:158
Alignment explanation
Indices: 435002--449627 Score: 3100
Period size: 159 Copynumber: 92.4 Consensus size: 158
434992 AAAAGAAAAT
* * * * * * *
435002 CATCAATATCATTTGTCCTAATGAGGAGAGTGTGTTTATGTTGCTTAAGCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * *
435065 AGATCAATACTAGAATCCTTGTTTCG-CTCATTT--GAGGCACAAACTTAGACTT-TA-CAAAAA
63 AGATTAATACGAGAATTCATGTTT-GTCTTATTTAAGAGG--CAAACTTTGA-TTCTATCAAAAA
** ** *
435125 TTGGTGGGAA-AAAAGCCTTTCTTAAGAAACTAAAG
124 -TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * *
435160 CATGAATAGT-TTGTATCCTAATGAGAAGACTATGTTTCTGGTGCCTAATCATGAAAAGAATCAG
1 CATCAATA-TCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT--G
* ** * *** * *
435224 GA-A-TATTATTAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGA
62 GAGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
* * * *
435287 TGGAAAGAAAAG-CTTCTCTAGCGACACCAATG
127 TGAAAAGAAAAGCCTT-TCTTGCGAAACCAAAG
* * ** * * * *
435319 CATCAATGTCAAGTATCCTAATGAAATGAATGTGTTTTTGGTTCGC-AATCTTGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC-CTAATCCTGAAAAGAATGGA
** * * * ** * * *** * * **
435383 GACCATTATGAGAATTGATGCATGTCTTTTTTAATAGATGAATTTTGATTTTATGGAAAATAGG-
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAT-GGT
* ** * * * ** *
435447 GCAAACCAAAG-ATTTCCATGCAAAAGAAAAT
128 GAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * ** * *
435478 CATCAATATCATTTATCCTAATGAGGAGACTGTGCATATAGTGCCTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * ** * *
435541 AGATCAA-AGCTAGAAACCATGTTTGTCTCATTT--GAGGCAAGAGCTTAGACTT-TAT-AAAAA
63 AGATTAATA-CGAGAATTCATGTTTGTCTTATTTAAGAGGCAA-A-CTTTGA-TTCTATCAAAAA
* *
435601 TTGGT--AAGGAAAAGCCTTTCTTGCAAAACCAAAG
124 -TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * * *
435635 CATCAATATCATGTATGCTAATGAGAAGACTATGTTTATAGTACCTAGT-CTATAAAATAATGGC
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCT-GAAAAGAATGGA
* * ** * * * * * * * * *
435699 GATTACTATGAGTCTTCATGCTTGACTTTTTTAAGAGACAAACATCGACTCTACCAAAAATAGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* *
435764 AAAAGAAAAGCTTTTCTTAC-AACACCAAAG
129 AAAAGAAAAGCCTTTCTTGCGAA-ACCAAAG
* * * * * **
435794 CATCAAT-GCTAGGTATCCTAAAGAAGGGAATGTGTTTTTGGCT-CCCAATATTGAAAAGAATGG
1 CATCAATATC-ATGTATCCTAATG-AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGG
* * ** * ** ** * * * ***
435857 GGACTGTTATGAGAATTGGTGCATGTCTTTGTTTAA-TGG-ATGAACTTTGATTTTAAGGAAAAT
63 AGATTAATACGAGAATTCATGTTTGTC-TTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT
* * * * * **
435920 -CTAGTAAAGAAAAG-ATTTCCATGCAAAAGAAAATG
125 GGT-GAAAAGAAAAGCCTTT-CTTGCGAAACCAAA-G
* * * * * * * * *
435955 -ATCAACAACATTTATCCT-TTGAAGAGAATGTGCTTATAGTGCCTAATCAC--AAAATAAATGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* ** * *
436016 AGATCAATA-GTAGAAACCATGTTTGTCTTATTT--GAGGCATGAGCTTAGACTTC-A-CAAAAA
63 AGATTAATACG-AGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA
** *
436076 TTGGT--AGGGAAAAAGCCTTTCTTGCGAAACCAGAG
124 -TGGTGAAAAG-AAAAGCCTTTCTTGCGAAACCAAAG
* ** * * * * *
436111 CATCAATATCATGTATCCTAAGGACAAGACTATGTTTATGGTACCTTATCCAT-AAAAGAAAGG-
1 CATCAATATCATGTATCCTAATGA-GGGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAATGGA
* * * * * *
436174 CATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATC-AAAATGGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* * ** * *
436238 GAAAGAAAAGCTTTTCTTATGACACCAAGG
129 AAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * *
436268 CATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* ** * * ** * * **
436333 ACTGTTATGAGAATTGATGCATGTCCTT-TTTAA-TGG-ATGAACTTTGATTTTATGGAAAATAG
65 ATTAATACGAGAATTCATGTTTGT-CTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-G
* * * ** ** *
436395 G-GCAAAGAAAAG-ATTTCCATGTAAAAGAAAAT
126 GTGAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * ** *
436427 CATCAATATCATCTACCCTAATGAGAAGAATGTGCTTATAGTGGTTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * ** * * * *
436490 AGATCAATACTAGAAACCATGTCTGTCTCATTT--GAGGCATGAGCTTAGACTT-TA-CAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-
* * *
436551 TGGT--AAGGAAAAGCTTTTCTTGTGAAACCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * *
436584 CATCAATATCTTGTATCCTAATGA--GAA---GTTTATGGTACCTAATCCAT-AAAAAAATGGTG
1 CATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAATGGAG
* * * * * * *
436643 AATACTATGAGTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGACTCTATCAAAAATGGTGG
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGA
** * *
436708 AAAGAAAAGATTTTCTTACGACACCAAAG
130 AAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * * ** *
436737 CATCAATGTCAAGTATCCTGATAAAGGGAGTGTGTTTTTGGTTCCCATTATTGAAAA-AACTGGG
1 CATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAA-TGGA
* ** ** * * ** * * * * ***
436801 GACTGTTTTGACAATTGATGCATGTCTTTGTTTAA-TGG-ATGAACATTGATTTTAAGGAAAATC
64 GATTAATACGAGAATTCATGTTTGTC-TTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-
* * ** * * ** *
436864 GG-GCAGAGAAAAGATTTTCATGCAAAAAAAAAT
125 GGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * *
436897 CATCGATATCATTTATCCTAATAAGGAAAATGTGCTTATAGTGCCTAAT-CAGAAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * * * * * *
436961 GATCATTACTAGAATCCATGTTTGTCTCATTT-A-AGGCACGAACTTAGACTT-T-GCAAAAATT
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-T
**
437022 GGTGGGAA-AAAAGCCTTTCTTAG-GAAACCAAAG
125 GGTGAAAAGAAAAGCCTTTCTT-GCGAAACCAAAG
** ** * * ** * *
437055 CATCAATATTGTGTATCCTAAAAAGAAGACTAAGTTTGTGGTGCCTAATCATGAAAAGAATTAGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAA-T-GG
* *** * * * *
437120 AAGAGT-AT--GTTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCGAAAACGG
63 -AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
* *
437182 TGGAAAGAAAAGCTTTTCTTGC-AACACCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAA-ACCAAAG
* * * * * *
437214 CATCTATGTCTTGTATCCTAATGAAGGGAATGTGCTTT-TGGTTCCTAATCGTGAAAAGAATGCA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTG-TTTATGGTGCCTAATCCTGAAAAGAATGGA
* * * * * * * * **
437278 TACTATTATGAGAA-TCAATGCTTGTCTTATTTAAG-GGATAAACTTCGATTTTAAGGAAAAGA-
64 GATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGG-CAAACTTTGATTCT-ATCAAAA-AT
* * * ** ** *
437340 GG-GCAAAGAAAAG-GTTTCCACAT-AAAAAAAAAAT
125 GGTGAAAAGAAAAGCCTTT---CTTGCGAAACCAAAG
* * * * * * ** * *
437374 CATCAATATCATTTATCATAATAAGGAGAATGTGCTTATAGTGCGTAAT-CAAAAAATGAGTGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * * * * * *
437438 GATCAATACTATAATCCTTGTTTAG-CTCATTT--GAGGCACGAACTTAGACTT-TA-CAAAAAT
64 GATTAATACGAGAATTCATGTTT-GTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-
** * * * *
437498 TGGTGGGAA-AAAAGCCTCTCTAGCAAAAGCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * ** ** * * ** *
437532 CATCAATATCGTGCATTATTTTGAGAAGACTACGTTTATGGTGCCTAAT-CTCGAAAAGAAT-AA
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCT-GAAAAGAATGGA
* ** ** * *
437595 GGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTATATCAAAAACGGT
64 -GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGT
* * ** *
437660 GAAAAGAAAAGCTTTTCTTACGGCACCAATG
128 GAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * *
437691 CATCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* ** * * * * * * * * * ***
437756 ACTGTTATGAGAATTGAAGCTTATCTTTTTTGAG-GGAAGAACTTTGATTTTAAGGAAAATAGG-
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA-AACTTTGATTCTATCAAAAAT-GGT
* * * * ** *
437819 GCAAATAAAAG-ATTTCCTTGCAAAAGAAAAT
128 GAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * * * *
437850 CATAAATACCATTTATCCTAATAAGGAGAATGTGCTTATAGTGCCTAATCC-CAAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * ** * * * *
437914 GATCAATACTAGAAACCATGATTGTCTCATTT--GAGGCATGAGCTTAGACTT-TA-CAAAAATT
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-T
* **
437975 GGT--AAGGAAAAAGCCTTTCTTATGAAACCAAAG
125 GGTGAAAAG-AAAAGCCTTTCTTGCGAAACCAAAG
* * ** * * * *
438008 CATCAATTTCGTGTATCCTAATGACAAGACTATGTTTATGGTACCTAATCCAT-AAAAGAAAGG-
1 CATCAATATCATGTATCCTAATGA-GGGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAATGGA
* * ** * * *
438071 CATTACTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* *
438136 AAAAGAAAAG-CTTTCCTGGCGACACCAAAG
129 AAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * * *
438166 TATCAATGTCATGTATACTAATGAAAGGAAAGTGTTT-TAG-GCTCTCAATCTTGAAAAGAAT-G
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC-CT-AATCCTGAAAAGAATGG
* ** * * * * *** * * * *
438228 AGGACTGTTATGA-AAATCAATGCTTGTCTTATTTAATAGATGAACTTTGATGTTTTTGAAAAAA
63 A-GATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGAT-TCTATCAAAAAT
* * * ** *
438292 GG-GCAAAA-AAAAG-ATTTCCATGCAAAAGAAAAT
125 GGTG-AAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * ** * * *
438325 CATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTCGTAAC--AAAATGCATGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAAT-CCTGAAAA-GAATGG
* *
438388 AGATTAATACTG-GAATCCATGTTTGTCTTATTT--GAGGCACGAACTTAGACTT-TA-CAAAAT
63 AGATTAATAC-GAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAA-
* ** * **
438448 TTGGTGGGAA-AAAAGCCTTTTTTAAGAAACCAAAG
123 ATGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * ** * * * *
438483 CACCAATATCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAATAAGGGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * *** * * *
438548 AATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTCTAATTCTATCAAAAATGGTGG
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGA
* *** *
438613 AAAGAAAAGCTTTTCCAACGACACCAAAG
130 AAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * *
438642 CATCAATGTCAAGGATCCGAATGAAGGGAATGTGTTT-TAGGTTCCCAAACCTGAAAAGAATGGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGA
* ** * * * ***
438706 GACTGCTATGAGAA-TCGATGCTTGTCTTATTTAAG-GG-ATGAACTTTGATTTTAAGTAAAATA
64 GATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-
* * ** *** * ** *
438768 GG-GCATAGAAAAGATTTTCACACAAAAGAAAAT
125 GGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
438801 CATCAATATCATTTATCCTGATGAGGAGAATGTGCTTATAGTGCCTAATCAC--AAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAAGAATGGA
* * * ** * * * *
438864 AATCATTAATAGAATCCATATTTGTCTCATTT--GAGGCATGAACTTAGACTT-TA-CAAAAATT
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-T
** * * *
438925 GGT--AGGGAAAATGCCTTTTTTGTGAAAGCAAAG
125 GGTGAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* * * * *
438958 CATTAATATCATATATCCTAATG-GGAAAACTATGTTTATGGTACCTAATCCAT-AAAAGAATAG
1 CATCAATATCATGTATCCTAATGAGG-GAA-TGTGTTTATGGTGCCTAATCC-TGAAAAGAAT-G
* * ** * *
439021 G-GATTACA-ATGAGTATTTGTGTTTGTCTTATTTAAGAGACAAACTTTGAGTCTATCAAAAATG
62 GAGATTA-ATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATG
* ** *
439084 GTGAAAAGAAAAGCTTTTCTTTTGACACCAAAG
126 GTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
439117 CATCAATGTCATGTATACTAATGAAGGGAATGTGTTT-TAGGTTCCCAATCCTGAAAAAAATAGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGA
* * * * * * ** * * ***
439181 GACTATTAAGAGAA-AC-GGTACTTGTCTTATTTAAGCGATAAGCTTTGATTTTAAGTAAAATAG
64 GATTAATACGAGAATTCATGT--TTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAT-G
* * ** * * ** *
439244 G-GCATAGAAAAGATTTTCATGCAAAAGAAAAT
126 GTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * *
439276 CATTAATATCTTTTATCCTAATGACGAGAATGTGTTTATAGTGCGTAATCAC--AAAATGAGTGA
1 CATCAATATCATGTATCCTAATGA-GGGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * *
439339 AGATCAATACTAGAA-TCATTGTTTTGGCTCATTT--GAGGCACGAACTTAGACTT-TA-CAAAA
63 AGATTAATACGAGAATTCA-TG-TTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAA
** * ** *
439399 ATTGGTG--GGGAAAAACCTTTCTTAAGTAACCAAAG
123 A-TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * ** * * *
439434 CACCAATATCGTGTATCCTAAAGAGAAGACTAAGTTTATGGAGCCTAATCGTGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * * * *
439499 AATAGT-CTGAGTATTCGTGTTTGTCTTATTTAGGAGACAAACTTTGAGTCTATCAAAAACGGTG
65 ATTAATAC-GAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
** ** *
439563 AAAAGAAAAGTTTTTCTTTTGACACCAAAG
129 AAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * ** * * *
439593 CTTCAATGTCATGTATAGTAATGAAGGGAATGTGTTT-TAGGTTCCCAATCCTGAAAAGAATAGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGA
* ** * ** * * * *** * * * ***
439657 GACTGTTAAGAGAA-TCGATACTTCTTTTATTTAAGCGATGAGCTTTCATTTTAAGTAAAATAGG
64 GATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAT-GG
* * ** * * ** *
439721 -GCATAGAAAAGATTTTCATGCAAAAGAAAAT
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
439752 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCGTAATCAC--AAAATGAGTGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * * * *
439815 AGATCAATGCTAGAATCCTTGTTTTGGCTCATTT--GAGGTATGAACTTAGACTT-TA-CAAAAA
63 AGATTAATACGAGAATTCATG-TTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA
** * ** *
439876 TTGGTG--GGGAAAAACCTTTCTTAAGTAACCAAAG
124 -TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * ** * * *
439910 CACCAATATCGTGTATCCTAAAGAGAAGACTAAGTTTATGGAGCCTAATCGTGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * *
439975 AATAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAATGGTT
65 ATTAATAC-GAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG-T
* * *
440039 G-AAAGAATAGCTTTTCTAGC-AACACCAAAG
128 GAAAAGAAAAGCCTTTCTTGCGAA-ACCAAAG
* * * * * * * * **
440069 CAGCAATGTCAAGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAGGGAATGGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* ** * * ***
440134 ACTGTTACGAGAA-TCAATGCTTGTCTT-TTTAAG-GG-ATGAACTTTGATTTTAAGGAAAATAG
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-G
* * ** * ** *
440195 G-GTAAAGAAAAG-ATTTC-CACATAAAAGAAAAT
126 GTGAAAAGAAAAGCCTTTCTTGC--GAAACCAAAG
* * * * *
440227 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATTGTGCCTAATCAC--AAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAAGAATGGA
* * * * * * * *
440290 AATCAATACTAAAATCCATGTTTGGCTCATTT--GAGGCACAAACTTAGACTT-TA-CAAAAATT
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGG--CAAACTTTGA-TTCTATCAAAAA-T
* * * *
440351 AGT-AGGAAG-AAAGCCTTTCTAGCAAAACCAAAG
125 GGTGA-AAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * ** * * * *
440384 AATCAATGTCATGCATCTTTGTGAGAAGACTGCGTTTATGCTGCCTAAT-CTCGAAAAGAATGCG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCT-GAAAAGAATG-G
* * ** * *
440448 -GATTAGTATGACTATTCATGCTTGTCTTATTTAAGAGGCAAACTTTGATTCT-TCTAAAA-GGA
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG-
*
440510 TGAAAAGAAAAGCCTTTCTTGCGACACCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * ** * *
440542 CGTTAATTTCGTGTATCCTAATGAAGGGAATGTGTTT-TAGGCT-CAAAATTCAGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GG-TGCCTAATCCTGAAAAGAATGG
* * * ** * * *** * ***
440605 AGACTACTACGAGAGTAGATGCTTATCTTATTTAAGAGATGAACTTTGATTTTAGGGAAAATAGG
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAT-GG
* ** * ** *
440670 -GCAAAGAAAA-AATTTCCTTGCAAAAAGAAAT
127 TGAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * ** *
440701 CATCAATATCATTTATCCT-ATGAGGAGAATGTGCTTATAGTGACTAA-CCACAAATA-AATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAA-AGAATGGA
* * * * ** * * *
440763 AATCAAAACTAGAAACCATGTTTGTCTCATTTGAAGCA--CGAACTTAGATT-TAAT-AAAAATT
64 GATTAATACGAGAATTCATGTTTGTCTTATTT-AAG-AGGCAAACTTTGATTCT-ATCAAAAA--
**
440824 TGG-GGGAA-AAAA-CCTTTCTTAG-GAAACCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTT-GCGAAACCAAAG
* * * * * ** * * *
440856 CACCAATATCGTGTAGCCTAATGAGAAGACTAAGTTTATGGTCCCTAATCATGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * ** ** *
440921 AATAATATGAGTATTCATGTTTATCTTATTTAAGAGGTGAACTTTGATTCTATCAAAAACAGTGG
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGA
* * * *
440986 AATGAAAA-CTTTTCTAGC-AGCACCAAAG
130 AAAGAAAAGCCTTTCTTGCGA-AACCAAAG
* * * * * * * * * *
441014 CATTAATGTCAAGTATCCTAATGAAAGGATTGTGTTTTTGGTTCCTAATCTTAAAAAAAAATGGG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCT-GAAAAGAAT-GG
* * * * * * * * ***
441079 GGCTGTCAT--GGGAATTGACATGTCTTGT-TTA-AT-GGATG--AACTTTGATTTTAAGGAAAA
63 AGAT-TAATACGAGAATT--CATGT-TTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAA
* * * * ** *
441137 TCGG-GCAAAA-TAAAG-ATTTCCATGCAAAAGAAAAT
124 T-GGTG-AAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * *
441172 CATCAATATTATTTATTCTAATGAGGAGAATGTGTTCATAGTGCCTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * * *
441235 AGATCAATACTAGAATCCAAGTTTGGCTCATTT--GAGGCACGAACTTAGACTT-T-GCAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-
** **
441296 TGGTGGGAA-AAAAGCCTTTCTTAAGAAACCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * ** * *
441330 CACCAATATCGTATATCCTAATGAGAAGACTAAGTTTATGGTTCCTAATCGTGAAAAGAATAGG-
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GGA
** * *** * **
441394 GAAGAGT--GTTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* ** *
441457 GAAAGAAAAGATTTTCTTGCGATACCAAAG
129 AAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * *
441487 CATCAATGTCTTGTATACTAATAAAGGGAATGT-TTTTTTGTTCC-AATCCTAAAAAGAATGGAG
1 CATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * * * **
441550 ACTATTATGTGAA-TCGATGCTTGTCTTATTT-AG-GGGATGAACTTTGATTTTAAGAAAAATAG
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-G
* * ** * ** *
441612 G-GCAAAGAAAAG-GTTTCCACGTGAAAGAAAAT
126 GTGAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * *
441644 CATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCGTGATCAC--AAAATAAGTGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAAGAA-TGG
* * * ** ** *
441707 AGATCAATACTAGAATTCTTGTTTCACCCATTT--GAGGCACGAACTTAGACTT-TA-CAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAAT
* * * * ** *
441768 --TCATAGGAAAAAACCTTTCTT-AAATAACCGAAG
125 GGTGAAAAG-AAAAGCCTTTCTTGCGA-AACCAAAG
* * * * ** * * * *
441801 CACCAATATCGTGTATCCTAAAATGA-TGACTAAGTTTATGGAGTCTAAACGTGAAAAGAATCAG
1 CATCAATATCATGTATCCT--AATGAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT--G
* * * * * *** *
441865 GA-A-TAGTATGCGTATTCATGTTTTTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGG
62 GAGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
* * * * *
441928 TGGAAGGAAAAGCTTTTCTAGCGACACCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * *
441960 CATCAATGTCAAGTATCCTAGTGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGA-
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * * *** *
442024 ACTATTACGAGAA-TCAAAGCTTGTCTT-TTTAA-AGGACGAACTTTGATTTTAAGGAAAATGGA
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGG-CAAACTTTGATTCTATCAAAAATGGT
* ** ** *
442086 GCAAAGAAAATG--TTTC-CACGTAAAAGAAAAT
128 GAAAAGAAAA-GCCTTTCTTGCG--AAACCAAAG
* * * *
442117 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTCATAGTGCCTAATCAC--AAAATGAAT-G
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * *
442179 ACGATCAATACTAGAATCCAAGTTTGGCTTATTTGAG-GGACAAACTTAGACTT-TA-CAAAAAT
63 A-GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGG-CAAACTTTGA-TTCTATCAAAAA-
** * * *
442241 TGGTGCGAAG-AAAGCCTTTCTAGCAAAATCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * ** * * * *
442275 CATTAATATCGTGCATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* ** *
442340 ATTAGTACGACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAATGGTGA
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGA
*
442405 AAAGAAAAGCCTTTCTTGCGACACCAAAG
130 AAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * *
442434 CATTAATGTCGTGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * ** * * * ***
442499 ACTATTACGAGAATTGGTGCTTGTCTTATTTAAG-GG-ATGAACTTAGATTTTAAGGAAAATAGG
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-GG
* ** ** * * *
442562 -GCAAAGAAAA-TATTTCCACGCAAAACAAAAT
127 TGAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * *
442593 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCC-CAAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * * * ** * *
442657 GATCAATACTAGAATCCATGTTTGTCTCATTT--GAGGCATGAACTAAGATTTTA-CAAAAAT-T
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAATGG
* ** *
442718 TGTAGGGAAAATGCCTATCTTGCGAAACCAAAG
127 TGAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* * * * *
442751 CATCAATATTCA-GTATCCTAATGAGAAGACTATGTTTAGGGTTCCTAATCCAT-AAAAGAATAG
1 CATCAATA-TCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAAT-G
* * * * * * * *
442814 G-GATTACTATGAGTATTCATGTTTGTCTAATTTAAGAGACAAACTTTGACTCTATAAAAAACGG
62 GAGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
* * *
442878 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * *
442910 CATCAATGTCATGTACCCTAATGAGGGGAATGTGTTT-TAGGT-TCTCAATCCTGTAAAGAATGG
1 CATCAATATCATGTATCCTAATGA-GGGAATGTGTTTAT-GGTGCCT-AATCCTGAAAAGAATGG
* * * * * *** * *** *
442973 AGACTATTACGAGAA-TCGGTGCTTATCTTATTTAAGAGATGAACTTTGATTTTAAGTAAAAT-A
63 AGATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
** ** * ** *
443036 AAACAAAGAAAAGATTTTCATGC-AAAAGAAACC
127 TGA-AAAGAAAAGCCTTTCTTGCGAAACCAAA-G
* * * * * * * *
443069 CGA-CAATATCATTTATCCTAATGAGGAGAAAGCGTTTATAGTGCATAATCAC-AAAAAGATTGA
1 C-ATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAAGAATGG
* * * * * * *
443132 AGATTAATACAAGAATCCTTGTTTGGCTCATTT--GAGGCACGAGCTTAGACTT-TA-CAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-
** *
443193 TGGT--AGGGAAAATGCCTTTCTTGCGAAATCAAAG
124 TGGTGAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* * * * * *
443227 CATCAATATCGTTTATCCTAA--AGTGAAGGTTATGTTATGGTGCCTAATCCCGAAAAGAATGG-
1 CATCAATATCATGTATCCTAATGAGGGAATG-TGT-TTATGGTGCCTAATCCTGAAAAGAATGGA
* ** ** * *
443289 GAATTAGTTTGACTATTCATGTTTGTCCTT-TTTAAAAGGCAAACTTTGATTCTATCAAAAACGG
64 G-ATTAATACGAGAATTCATGTTTGT-CTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
*
443353 TGAAAAGAAAAGCCTTTCTTGC-AACAACAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAA-ACCAAAG
* * * * * * *
443385 CATCAATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * * * ***
443450 ACTATTACGAGAA-TCGATGCTTATCTT-TTTTAG-GGGATGAACTTTGATTTTAAGGAAAATAG
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-G
* * ** * ** *
443512 G-GCAAAGAAAAG-ATTTCCACGCAAAAGAAAAT
126 GTGAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * *
443544 CATCAATATCATTTATCCTAATGAGGAGAATATGTTCATAGTGCCTAATCC-CAAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * * * ** *
443608 GATCAATACTAGAATCCATGTTTATCTCT-TTT--GAGGCACAAACTAAGGCTT-TA-CAAAAAT
64 GATTAATACGAGAATTCATGTTTGTCT-TATTTAAGAGG--CAAACT-TTGATTCTATCAAAAAT
* * ** *
443668 -TTGTAGGGAAAATGCCTTTCTTGCGAAACTAAAG
125 GGTGAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* * * * * ** *
443702 CATCAATATCGTGTATTCTAATGAGAAGACTATGTTTATGGTTTCTAATCCAT-AAAGGAATGGA
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAATGGA
* * * * * * * *
443766 GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCCATCAAAAACGGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* * *
443831 GAAAGAAAAG-CTTTCCTTGTGACACCAAAG
129 AAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * *
443861 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TAGGT-TCTCAATCCT-ATAAAGGATG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCT-AATCCTGA-AAAGAATG
* * * * * *** * ***
443923 GAGACTATTATGAGAATTGATGTTTATCTTATTTAAGAGATGAACTTTGATTTTAAGTAAAATGG
62 GAGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
* * ** *** * ** *
443988 GGCAAAGAAAAGATTTTAACGCAAAAGAAAAC
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * ** * * * *
444020 CACCAATATTATTTATCCAAATGAGGAGAATGTGTTTATAATGCGTAATAAC--AAAATGATTGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAAT-CCTGAAAA-GAATGG
* * * * * * * *
444083 AGATTAATACAAGAATACTTGTTTGGCTCATTT--GAGGTACGAGCTTAGACTT-TA-CAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGG--CAAACTTTGA-TTCTATCAAAAA-
**
444144 TGGT--AGGGAAAATGCCTTTCTTGCGAAACCAAAG
124 TGGTGAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* * * * *
444178 CATCAATATCGTGTATCCTAA--AGTGAAGGTTGTGTTATGGTGCCTAATCCCGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATGAGGGAATG-TGT-TTATGGTGCCTAATCCTGAAAAGAATGGA
* ** * * *
444241 GATTAGT-CTGACTATTCATGTTTGTCCTATTT-AGAAGGCAAACTTTCATTCTATCAAAAACGG
64 GATTAATAC-GAGAATTCATGTTTGTCTTATTTAAG-AGGCAAACTTTGATTCTATCAAAAATGG
**
444304 TGAAAAGAAAAGCCTTTCTTGCGATCCCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * *
444336 CATCGATATCGTGTATCCTAACGAAGGGAAAGTGTTT-TCGGTTCCCAATCCTGTAAAGAATGGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGA
* * * * * * * ***
444400 GACTATTATGAGAA-TCGATGCTTATCTTTTTTAA-AGG-ATGAACTTTGATTTTAAGGAAAATA
64 GATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-
* ** ** * ** *
444462 GG-GCAAAGAAAAGATTTTCACGCAAAAGAAAAT
125 GGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
** * * * * *
444495 TGTCAATATCATTTATCCTAATGAGGAGAATATGTTCATAGTGCCTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * * * *
444558 AGATCAATACTAGAATCCATGTTTGCCTCATTT--GATGTATGAACTTAGAGTTC--GCAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAA-
* **
444619 TAGTGAGAAA-AAAA-CCTTTCTTAAGAAACCAAAG
124 TGGTGA-AAAGAAAAGCCTTTCTTGCGAAACCAAAG
** * * * * * ** * * * *
444653 CGCCATTATCGTCTATCCTAATGAGAAGACTAAGTTTACGGTGCATAATCATGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * * *
444718 AATAGTATGAGTATTCATGTTTGTCTTATTTCAGAGACTAACTTTGATTCTATCAAAAATGGTGA
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGA
* * * * *
444783 AAAG-AAATCTTTTCTAGCTG-CATCAAAG
130 AAAGAAAAGCCTTTCTTGC-GAAACCAAAG
* * * * * * *
444811 CATCAATGTCAAGTGTCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATGAAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * ***
444876 ACTATTACGAGAA-TCGATGCTTGTCTTATTTAAG-GG-ATTAACTTTGCTTTTAAGGAAAATAG
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-G
* * * ** *
444938 G-GCAAAGAAAAG-ATTT-TCGCAGAAAAGAAAAT
126 GTGAAAAGAAAAGCCTTTCTTGC-G-AAACCAAAG
* * * * * * *
444970 CATCAATATCATTTATTCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCC-CAAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * * ** *
445034 GATCAATACTAGAATCCATGTTTGTCTCT-TTT--GAGGCACGAACTAAGACTT-TA-CGAAAAT
64 GATTAATACGAGAATTCATGTTTGTCT-TATTTAAGAGGCA--AACTTTGA-TTCTATCAAAAAT
* * * *
445094 -TTGTAAGGAAAATGCCTTTCTTGCGAAACTAAAG
125 GGTGAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* * * * **
445128 CATCAATATCATGTATCCTAGTGAGAAGACTATGTTTATGGTTTCTAATCCAT-AAAAGAATGG-
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAATGGA
* * * * ** * *
445191 GATTACTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACATTGACTCTATCAAAAATGGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* * * * *
445256 GAAAGAAAAGCTTTTCTTGTGACACTAAAG
129 AAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * ** *
445286 CATCAATGTCATGTATCCTATTGAAACGAATGTGTTT-TAGGT-TCTCAATCCTGTAAAAG-ATG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCT-AATCCTG-AAAAGAATG
* * ** * * *** * *
445348 GAGACTATTATAAGAA-TCGATGCTTATCTTATTTAAGAGATGAACTTTGATTTTA-AATAAAAT
62 GAGATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCA-AAAAT
* *** *** * ** *
445411 GGTGCAAAGAAAATATTTTAACGCAAAAAAAAAAC
125 GGTGAAAAGAAAAGCCTTTCTTGC-GAAACCAAAG
* * * ** * * * *
445446 CATCAATATCATTTACCCTAATGAGGAGAATGTTTTTATAATGCGTAATCAT-AAAATGATTGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGA
* * ** * * * * * * * * *
445510 TATTAAAATAAGAATCCTTGTTTGGCTCATTT--GTGGTACGAGCATAGACTT-TAT-AAAAATT
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGG--CAAACTTTGA-TTCTATCAAAAA-T
* *
445571 GGT-AGGAA-AAATGCCTTTCTTGCGAAACCAAAG
125 GGTGA-AAAGAAAAGCCTTTCTTGCGAAACCAAAG
* ** * * * * * *
445604 TATCAATATCATGCGTCCTAA--AGTGAAATTATGTTTATGGTGCCCAATCCCGAATAGAATGGG
1 CATCAATATCATGTATCCTAATGAG-GGAA-TGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA
* ** ** * * * * **
445667 GATTAGTTTGACTATTCATATTTGTCCTATTTAAAAGGCAAACTTTGATTCTACCAAAAACAGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* * *
445732 AAAAGAAAAGCCTTTTTTGCGACACGAAAG
129 AAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * ** * * * * *
445762 TATCAATGTTGTGTATCCTAATGAAAGGAAAGTGATTT-TGGTTCCCAATCCTAAAAAGAATGGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTG-TTTATGGTGCCTAATCCTGAAAAGAATGGA
* * * * * * * * ***
445826 GACTATTACGAGAATTAATGCTTATCCTT-TTGAAG-GG-ATGAACGTTGATTTTAAGGAAAATA
64 GATTAATACGAGAATTCATGTTTGT-CTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-
* * * ** * ** *
445888 GG-GTAAAGAAAAG-ATATCCACGCAAAAGAAAAT
125 GGTGAAAAGAAAAGCCT-TTCTTGCGAAACCAAAG
* * * * * *
445921 CATCAATATCATTTATCCAAATAAGGAGAATGTGTTCATAGTGCCTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * ** * *
445984 AGATTAATACTAGAATCCATGTTGGTCTCATTT--GATGTAAGAACTTAGACTTC--GCAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGA-GGCA-AACTTTGA-TTCTATCAAAAA-
* * **
446045 TAGTGAGAA-AAAAGCCTTTCTTAAGAAACCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * ** * *
446079 CACCAATATCGTGTATCCTAATGA-GAACACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATGAGGGA-A-TGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA
* * * * *** *
446143 GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGTG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* * * * *
446208 AAAAG-AAATCTTTTCTAG-TAGCACCAAAG
129 AAAAGAAAAGCCTTTCTTGCGA-AACCAAAG
** * * * * **
446237 CATCAACGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTAAAAAGAATAAAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
*** * * ***
446302 ACTATAAT--GAGAA-TCGACACTTGTTTTATTTAAG-GG-ATTAACTTTGATTTTAAGGAAAAT
65 A-T-TAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT
* * ** * ** *
446362 AGG-GCAAAGAAAAGACTTTCACGCAAAAGAAAAT
125 -GGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * * * * *
446396 TATCAAGATCATTTATTCTAATAAAGAGAATGTATTCATAGTGCCTAATCC-CAAATGAATGAAG
1 CATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * *** *
446460 ATAAATACTAGAATCCATGTTTGTCTTATTT--GAGGCACGAACTAAAAATT-TA-CAAAAAT-T
65 ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACT-TTGATTCTATCAAAAATGG
* ** *
446520 TGTAGGGAAAAAGCCTTTCTTGCGAAGCCAAAG
127 TGAAAAG-AAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * *
446553 CATCAATTTCGTGTATCCAAATGCGAAGACTATGTTTATGGTTCTTAATCCAT-AAAAGAATAGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAAT-GG
* * * * * *
446617 -GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGT
* * * *
446681 GGAGAGAAAAGCCTTTTTTGCCG-CACCAAAG
128 GAAAAGAAAAGCCTTTCTTG-CGAAACCAAAG
** *
446712 CATCAATGGCATGTATCCTAATGAAGGGAATGTGTTTGA-GGCT-CCCAATCCTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTT-ATGG-TGCCTAATCCTGAAAAGAATGG
* ** * * ***
446775 AGACTGTTACGAGAA-TCGATGCTTGTCTTATTTAAG-GG-ATGAACTTTGATTTTAAGTAAAAT
63 AGATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT
* * ** ** ** ** *
446837 AGG-GCATAGAAAAGATTTTCACGTAAAAGAAAAT
125 -GGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * ** ** *
446871 CATCAATATCATTTATCCTAATGAAGAGAATGTTTTTATATTGTGTAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * *
446934 AGATCAATACTAGAA-TCATTGTTTGGCTCATTT--GAGGCAAGAACTTAGACTT-TAT-AAAAA
63 AGATTAATACGAGAATTCA-TGTTTGTCTTATTTAAGAGGC-A-AACTTTGA-TTCTATCAAAAA
* * *
446994 TTGGT-AGGAAG-AACGCATCTT-TTGCGAAACCAAAG
124 -TGGTGA-AAAGAAAAGCCT-TTCTTGCGAAACCAAAG
* ** * * *
447029 CATCAATATCATGGATCCTTTTGAGAAGACTGTGTTTATGGTGCCTAAT-CTCGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCT-GAAAAGAATGGA
* ** * * *
447093 GATTAGT-CTGACTATTCATGTTTGTCCTATTTGAA-AGGCAAACTTTGATTTTATTAAAAATGG
64 GATTAATAC-GAGAATTCATGTTTGTCTTATTT-AAGAGGCAAACTTTGATTCTATCAAAAATGG
* ***
447156 TGAAAAGAAAAGGCTTTCTTGCGGCCCCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * * *
447188 TATAAATGTCGTGTATCCTAATGAGGGGAAAGTGTTTTTGGTTCCCATTCCTGAAAAAAATGGAG
1 CATCAATATCATGTATCCTAATGA-GGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * *****
447253 ACTATAAT--GAGAATTGATGCTTATCATT-TTTAAG-GG-ATGTACTTTGATTTTAAGGGTAAT
65 A-T-TAATACGAGAATTCATGTTTGTC-TTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT
* * * * ** * ** *
447313 GGGGCAAAGGAAAG-ATTTCCACGCAAAAGAAAAT
125 GGTGAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* ** * * * * *
447347 CATCAATATCATTTATCCTAATGAGGAGAATGAATTCATAGTGCCTAAT--TACAAAATGAACGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCT-GAAAA-GAATGG
* * * * * * ** *
447410 AGATCAATACTAGAATCCATGTTTGTCTCATTT--GATGTATGAACTAAGAGTT-TA-CAAAATT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTCTATCAAAA-A
* * **
447471 TTGTGAGAA-AAAAGCCTTTCTTAAGAAACCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * ** * *
447505 CACCAATATCGTCTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAA-AATTGGG
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAA-TGGA
* * * * * *** * *
447569 GAATAGTATGAGCATTCATTTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGATG
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTG
* * * * *
447634 GAAAG-AAATCTTTTCTAGC-AGCACCAAAG
129 AAAAGAAAAGCCTTTCTTGCGA-AACCAAAG
* * * **
447663 CATCAATGTCATGTATCCTAATAAAGGGAATGTGTTT-TAGGT-TCTCAATCCT-ATAAAGGTTG
1 CATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTAT-GGTGCCT-AATCCTGA-AAAGAATG
* * * * * *** * ***
447725 GAGACTATTACGAGAA-TCGATGCTTATCTTATTGAAGAGATGAACTTTGATTTTAAGTAAAATG
62 GAGATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATG
* * ** *** * ** *
447789 GGGCAAAGAAAAGATTTTAACGCAAAAGAAAAC
126 GTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * ** * * *
447822 CATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAATGCGTAATCAC--AAAATGATTGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * * * *
447885 AGATTAATACAAGAATCCTTG-TTGGCTCATTT--GCGGTACGAGCTTAGACTT-TA-CAAAAAT
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGG--CAAACTTTGA-TTCTATCAAAAA-
* *
447945 TGGTCG---GGAAAATGCCTTTCTTGTGAAACCAAAG
124 TGGT-GAAAAGAAAA-GCCTTTCTTGCGAAACCAAAG
* ** * * * *
447979 -ATCAATGTTGTGTATCCTAAAGAGAAGG-TTATGTTTATGGTGCCTAATCCCGAAAAGAATAGG
1 CATCAATATCATGTATCCTAATGAG--GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GG
* ** * * * * *
448042 -GATTAGT-CTGACTATTCATGTTTGCCCTATTTAAAAGGCAAACTTTGATTATATCAAAAACGG
63 AGATTAATAC-GAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGG
* * **
448105 TGAAAAGAAAAGCTTTTCTTACGGCACCAAAG
127 TGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
448137 CATCAATGTCGTGTATCTTAATGAAGGGAAAGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * * * * *
448202 ACTATTATGAGAA-TCGATGCTTATCTTTTTTAAG-GG-ATGCACTTTGATT-TTTAAGAAAATA
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCA-AAAAT-
* ** * ** *
448263 GG-GCAAAA-AAAAG-ATTTCCACGCAAAAGAAAAT
125 GGTG-AAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * * *
448296 CATCAATATCTTTTCTCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCAC--AAAATGAACGA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * *
448359 AGATCATTACTAGAATCCATGTTTGTCTCATTT--GATGTACAAACTTGGA--CTATACAAAAAA
63 AGATTAATACGAGAATTCATGTTTGTCTTATTTAAGA-G-GCAAACTTTGATTCTAT-C-AAAAA
** ** **
448420 TACTGGGAA-AAAAGCCTTTCTTAAGAAACCAAAG
124 TGGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* ** ** * *
448454 CACCAATATCATGTATCCTAATGA-TAACACTAAGTTTATGGTGCCTAATCATAAAAAGAAT-GA
1 CATCAATATCATGTATCCTAATGAGGGA-A-TGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA
* * * * *** *
448517 GGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAACGGT
64 -GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGT
* * * ** *
448582 GGAAAG-AAATCTTTTCGAGC-AGCACCAAAG
128 GAAAAGAAAAGCCTTTCTTGCGA-AACCAAAG
* * * * *
448612 CATCAATATCAAGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCTAATTCTGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * *** *
448677 ACTATTACGAGAA-TCGATGCTTGTTTTATTTAAGA-G-AAACTTTGATTTTAAGGAAAATAAG-
65 ATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAT-GGT
* * ** * ** *
448738 GCAAAGAAAAG-ATTTCCACGCAAAAGAAAAT
128 GAAAAGAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * ** * * *
448769 TATCAATATCATTTATCCTAATGAGGAGAATGTGATCATAATGCCTAATCC-CAAAACAGATGAA
1 CATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCCTGAAAAGA-ATGGA
* * * * * ***
448833 GATGAAAACTAGAATCCATGTTTGTCTCATTT--GAGGCACGAACTAAAAATT-TA-CAAAAAT-
64 GATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCA--AACT-TTGATTCTATCAAAAATG
* * **
448893 TTGTAGGGAAAAAGCCTTTCTTGCGAAACCAAAG
126 GTGAAAAG-AAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * ***
448927 CATCAATTTCGTGTATCCGAATGCGATGACTATGTTTATGGTTTTTAATCCAT-AAAAGAATGG-
1 CATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCC-TGAAAAGAATGGA
* * * * * *
448990 GAATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGAT
64 G-ATTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGT
* *
449055 GGAAAGAAAAGCTTTTCTTGC-AACACCAAAG
128 GAAAAGAAAAGCCTTTCTTGCGAA-ACCAAAG
* * * * *
449086 CATCAATGTCATGTATCCTAATGAATGGAATGTGTTT-TAGGTTCCCAATCTTGAAAAGAATGGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGA
* ** * * * ***
449150 GACTGTTACGAGAA-TCGATGCTGGTCTTATTTAAG-GG-ATGAACTTTGATTTTAAGTAAAATA
64 GATTAATACGAGAATTC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAAT-
* * ** ** ** ** *
449212 GG-GCATAGAAAAGATTTTCACGTAAAAAAAAAT
125 GGTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * ** * * *
449245 CATCAATATCATTTATCCTAATGAAGAGATTGTTTTTATATTACATAATCAC--AAAATGAATGA
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * *
449308 AGATCAATACTAGAA-TCATTGTTTGGCTCATTT--GAGGCAAGAACTTAGACTT-TA-CAAAAA
63 AGATTAATACGAGAATTCA-TGTTTGTCTTATTTAAGAGGC-A-AACTTTGA-TTCTATCAAAAA
* *
449368 TTGGT-AGGAAGAACA-CCTCTT-TTGCGAAACCAAAG
124 -TGGTGA-AAAGAAAAGCCT-TTCTTGCGAAACCAAAG
* ** * * * * *
449403 CATCAATATCATGGAT-CTTTTGGAGAAGACTGCGTTTTTGGTGCCTAAT-CTCGAAAATAATGG
1 CATCAATATCATGTATCCTAAT-GAG-GGAATGTGTTTATGGTGCCTAATCCT-GAAAAGAATGG
* * ** * *
449466 GGATTAGT-CTGACTATTCATGTTTGTCCTATTTGAA-AGGCAAACTTTGATTCTATCAAAAACG
63 AGATTAATAC-GAGAATTCATGTTTGTCTTATTT-AAGAGGCAAACTTTGATTCTATCAAAAATG
* ** **
449529 GTGAAAAGAAAAGGCTTTCTTATGACCCCAAAG
126 GTGAAAAGAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * *
449562 TATCAATGTCGTGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCATTACTGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
449627 A
65 A
449628 CTATAATGAG
Statistics
Matches: 10103, Mismatches: 3417, Indels: 1895
0.66 0.22 0.12
Matches are distributed among these distances:
150 2 0.00
151 49 0.00
152 10 0.00
153 48 0.00
154 9 0.00
155 73 0.01
156 276 0.03
157 1433 0.14
158 3380 0.33
159 4098 0.41
160 656 0.06
161 65 0.01
162 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
CATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGA
TTAATACGAGAATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGAA
AAGAAAAGCCTTTCTTGCGAAACCAAAG
Found at i:451783 original size:28 final size:30
Alignment explanation
Indices: 451752--451820 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
451742 ACCGAGGTGG
*
451752 GAGTATCCCC-TCG-GAAATAAC-GAGGTTT
1 GAGTATCCCCATCGTGAAATAACGGA-GTTA
*
451780 GAGTATCCCCGATTGTGAAATAACGGAGTTA
1 GAGTATCCCC-ATCGTGAAATAACGGAGTTA
451811 GAGTATCCCC
1 GAGTATCCCC
451821 GAGATGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 10 0.29
30 2 0.06
31 21 0.60
32 2 0.06
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (30 bp):
GAGTATCCCCATCGTGAAATAACGGAGTTA
Found at i:451784 original size:107 final size:105
Alignment explanation
Indices: 451579--451788 Score: 242
Period size: 107 Copynumber: 2.0 Consensus size: 105
451569 TGTTCAAGAA
* * ** * ** * *
451579 ATAAAATCAGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAACTAAAATTGGGGTT
1 ATAAAATAAGGGTTGGAGTATCCCCGATTGTAAAAAATTAGTGTTTTAAAAATAAAACCGAGGTG
*
451644 AGAGTACCCCCTCGAAAATAATAGGGTTAGAGTATCCCTG
66 AGAGTACCCCCTCGAAAATAAGAGGGTTAGAGTATCCCTG
* *
451684 ATAAAATAACGGGATTGGAGTATTCCCGATTGTAAAAAATTGGTGTTTTAAAAATAAAACCGAGG
1 ATAAAATAA-GGG-TTGGAGTATCCCCGATTGTAAAAAATTAGTGTTTTAAAAATAAAACCGAGG
* * * *
451749 TGGGAGTATCCCCTCGGAAATAACGA-GGTTTGAGTATCCC
64 TGAGAGTACCCCCTCGAAAATAA-GAGGGTTAGAGTATCCC
451789 CGATTGTGAA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
105 8 0.09
106 3 0.03
107 74 0.86
108 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (105 bp):
ATAAAATAAGGGTTGGAGTATCCCCGATTGTAAAAAATTAGTGTTTTAAAAATAAAACCGAGGTG
AGAGTACCCCCTCGAAAATAAGAGGGTTAGAGTATCCCTG
Found at i:454214 original size:20 final size:20
Alignment explanation
Indices: 454177--454252 Score: 91
Period size: 20 Copynumber: 3.8 Consensus size: 20
454167 ATGTATCGAT
*
454177 ACAATGTATCT-ATGCAATGA
1 ACAATGTAT-TAATACAATGA
* *
454197 ACAATTTATTGATACAATGA
1 ACAATGTATTAATACAATGA
*
454217 ACAATGTATTAATACAATAA
1 ACAATGTATTAATACAATGA
*
454237 ACAATGTATCAATACA
1 ACAATGTATTAATACA
454253 TCTGGGTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
19 1 0.02
20 48 0.98
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.30
Consensus pattern (20 bp):
ACAATGTATTAATACAATGA
Found at i:455100 original size:62 final size:61
Alignment explanation
Indices: 454941--455113 Score: 206
Period size: 61 Copynumber: 2.8 Consensus size: 61
454931 GTCCTGCTCC
* * ** **
454941 TTGGGGACTAGCAGGTGCCACCAACTTGTATGGGCTTTGCAAGGAGAAA-GCATCTTGTTCT
1 TTGGGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCTACTTCT
* * *
455002 TTGAGGACTGGAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACTT-T
1 TTGGGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT-CTACTTCT
* *
455063 TTGGGGACTAGAAAAGTTCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
1 TTGGGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
455114 AAAAGTGCCA
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
60 3 0.03
61 52 0.55
62 40 0.42
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (61 bp):
TTGGGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTACTTCT
Found at i:455128 original size:40 final size:40
Alignment explanation
Indices: 455073--455153 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
455063 TTGGGGACTA
*
455073 GAAAAGTTCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
455113 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
455153 G
1 G
455154 CATCCTGCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (40 bp):
GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:455205 original size:102 final size:102
Alignment explanation
Indices: 455016--455215 Score: 294
Period size: 102 Copynumber: 2.0 Consensus size: 102
455006 GGACTGGAAG
* ** ** *
455016 GTGCCACTAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACTTTTTGGGGACTAGAAAAGTT
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACTAATTAAGGACTAGAAAAGTG
*
455081 CCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGAAAA
66 CCACCAACTTGTATGGGCTTTAAAAGGAAAAGGAAAA
* * *
455118 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTA-TAAGGTG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACTAATTAAGGACTAGAAAAGTG
455182 CCACCAACTTGTATGGGCTTTTAAAAGGAAAAGG
66 CCACCAACTTGTATGGGC-TTTAAAAGGAAAAGG
455216 CGTCCTGCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 21 0.24
102 66 0.76
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (102 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACTAATTAAGGACTAGAAAAGTG
CCACCAACTTGTATGGGCTTTAAAAGGAAAAGGAAAA
Found at i:455234 original size:62 final size:60
Alignment explanation
Indices: 455118--455240 Score: 183
Period size: 62 Copynumber: 2.0 Consensus size: 60
455108 AAAAGGAAAA
*
455118 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTATAAG
1 GTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTA-AAG
* ** *
455179 GTGCCACCAACTTGTATGGGCTTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAG
1 GTGCCACCAACTTGTATGGGC-TTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTAAAG
455240 G
1 G
455241 GTGAAAGGAG
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 24 0.43
62 32 0.57
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (60 bp):
GTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTAAAG
Found at i:455261 original size:101 final size:100
Alignment explanation
Indices: 455153--455336 Score: 228
Period size: 101 Copynumber: 1.8 Consensus size: 100
455143 AAAGGAAAAG
* *
455153 GCATCCTGCTAATTAAGGACTATAAGGTGCCACCAACTTGTATGGGCTTT-TAAAAGGAAAAGGC
1 GCATCCTGCTAATTAAGGACTAGAAAGTGCCACCAACTTGTATGGGCTTTAT-AAAGGAAAA-GC
*
455217 GT-CCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGA
64 -TACCTACTCTTTGAGGACTAAAGGGTGAAAGGAGAGA
** * * * * * *
455254 GCATCCTGCTCTTTGAGGATTGGAAAGTGCCACCAACTTGTGTGGGCTTTATAAGGGGAAAGCTA
1 GCATCCTGCTAATTAAGGACTAGAAAGTGCCACCAACTTGTATGGGCTTTATAAAGGAAAAGCTA
455319 CCTACTCTTTGAGGACTA
66 CCTACTCTTTGAGGACTA
455337 GTAGGTGCCA
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
99 1 0.01
100 19 0.27
101 49 0.70
102 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (100 bp):
GCATCCTGCTAATTAAGGACTAGAAAGTGCCACCAACTTGTATGGGCTTTATAAAGGAAAAGCTA
CCTACTCTTTGAGGACTAAAGGGTGAAAGGAGAGA
Found at i:455418 original size:123 final size:124
Alignment explanation
Indices: 455254--455521 Score: 418
Period size: 123 Copynumber: 2.2 Consensus size: 124
455244 AAAGGAGAGA
* * * *
455254 GCATCCTGCTCTTTGAGGA-TTGGAAAGTGCCACCAACTTGTGTGGGCTTTATAAGGGGAAA-GC
1 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGAAAAGGC
* *
455317 -TACCTACTCTTTGAGGACTAGTAGGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAAG
65 GT-CCTACTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAG
455376 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
*
455441 TCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAG
66 TCCTACTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAG
*
455500 GCGTCCTGCTCTTTGAGGACTA
1 GCATCCTGCTCTTTGAGGACTA
455522 AAGGGTGAAA
Statistics
Matches: 134, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
122 26 0.19
123 75 0.56
124 33 0.25
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (124 bp):
GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
TCCTACTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAG
Found at i:455426 original size:62 final size:61
Alignment explanation
Indices: 455254--455521 Score: 369
Period size: 61 Copynumber: 4.4 Consensus size: 61
455244 AAAGGAGAGA
* * ** *
455254 GCATCCTGCTCTTTGAGGATTGGAAAGTGCCACCAACTTGTGTGGGCTTTATAAGGGGAAA-
1 GCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTA-AAAAGAAAAG
* * *
455315 GC-TACCTACTCTTTGAGGACTAGTAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCAT-CCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
*
455376 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCATCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * *
455438 GCGTCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAG
1 GCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAAG
*
455500 GCGTCCTGCTCTTTGAGGACTA
1 GCATCCTGCTCTTTGAGGACTA
455522 AAGGGTGAAA
Statistics
Matches: 185, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
60 7 0.04
61 90 0.49
62 88 0.48
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (61 bp):
GCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
Found at i:455580 original size:162 final size:162
Alignment explanation
Indices: 455376--455682 Score: 474
Period size: 162 Copynumber: 1.9 Consensus size: 162
455366 AAAAGAAAAG
455376 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGC
1 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA-GC
* *
455440 GTCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAGGCGTC
65 ATCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAAGGCATC
* *
455505 CTGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGA
129 CTACTCCTTGAGGACTAAAGGGTGAAAAGAGAGA
* *** **
455539 GCATCTTGCTCTTTGAGGACT-GGGCAGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAAGCA
1 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCA
* *
455603 TCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCT
66 TCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCT
455668 ACTCCTTGAGGACTA
131 ACTCCTTGAGGACTA
455683 GAAAAGTGTC
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
161 30 0.23
162 78 0.60
163 23 0.18
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (162 bp):
GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCA
TCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCT
ACTCCTTGAGGACTAAAGGGTGAAAAGAGAGA
Found at i:455630 original size:285 final size:285
Alignment explanation
Indices: 455113--455716 Score: 985
Period size: 285 Copynumber: 2.1 Consensus size: 285
455103 AAAGGAAAAG
*
455113 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTATAA
1 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTAGAA
* *
455178 GGTGCCACCAACTTGTATGGGCTTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
66 GGTGCCACCAACTTGTATGGGCTTTCAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
* * *
455243 GAAAGGAGAGAGCATCCTGCTCTTTGAGGATTGGAAAGTGCCACCAACTTGTGTGGGCTTTATAA
131 GAAAAGAGAGAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTACAA
* *
455308 GGGGAAAGCTACCTACTCTTTGAGGACTAGTAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
196 GGAGAAAGCTACCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
* *
455373 AAGGCATCCTGCTCTTTGAGGACTA
261 AAGGCATCCTACTCCTTGAGGACTA
* **
455398 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTAAGGACTAGAA
1 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTAGAA
*
455463 GGTGCCACCAACTTGTGTGGGCTTTCAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
66 GGTGCCACCAACTTGTATGGGCTTTCAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
* ** *
455528 GAAAAGAGAGAGCATCTTGCTCTTTGAGGACTGGGCAGTGCCACCAACTTGTGTGGGCTTTGCAA
131 GAAAAGAGAGAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTACAA
* *
455593 GGAGAAAGC-ATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA
196 GGAGAAAGCTA-CCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA
455657 AAAGGCATCCTACTCCTTGAGGACTA
260 AAAGGCATCCTACTCCTTGAGGACTA
* * *
455683 GAAAAGTGTCACCAGCTTGTGTGGGCTTTGAAAG
1 GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
455717 ACGTCCTACT
Statistics
Matches: 295, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
284 1 0.00
285 294 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (285 bp):
GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTAATTAAGGACTAGAA
GGTGCCACCAACTTGTATGGGCTTTCAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
GAAAAGAGAGAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTACAA
GGAGAAAGCTACCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
AAGGCATCCTACTCCTTGAGGACTA
Found at i:455633 original size:61 final size:60
Alignment explanation
Indices: 455527--455715 Score: 227
Period size: 61 Copynumber: 3.1 Consensus size: 60
455517 GACTAAAGGG
* * *
455527 TGAAAAGAGAGAGCATCTTGCTCTTTGAGGACTGGGCAGTGCCACCAACTTGTGTGGGCTT
1 TGAAAAGAGAAAGCATCTTGCTCTTTGAGGACT-AGAAGTGCCACCAACTTGTGTGGGCTT
* *
455588 TGCAAGGAGAAAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAAGAGAAAGCATCTTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTT
* * * * * *
455649 TAAAAAGA-AAAGGCATCCTACTCCTTGAGGACTAGAAAAGTGTCACCAGCTTGTGTGGGCTT
1 TGAAAAGAGAAA-GCATCTTGCTCTTTGAGGACTAG--AAGTGCCACCAACTTGTGTGGGCTT
455711 TGAAA
1 TGAAA
455716 GACGTCCTAC
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
60 5 0.05
61 78 0.71
62 25 0.23
63 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (60 bp):
TGAAAAGAGAAAGCATCTTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTT
Found at i:455738 original size:56 final size:57
Alignment explanation
Indices: 455547--455738 Score: 174
Period size: 61 Copynumber: 3.2 Consensus size: 57
455537 GAGCATCTTG
* ** * *
455547 CTCTTTGAGGACTGGGCAGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAAG-CATCTTG
1 CTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAAGACATCCTA
* *
455608 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTA
1 CTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT----AGAAAAGACATCCTA
* * * *
455669 CTCCTTGAGGACTAGAAAAGTGTCACCAGCTTGTGTGGGCTTT-G-AAAGACGTCCTA
1 CTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAGAAAAGACATCCTA
455725 CTCTTTGAGGACTA
1 CTCTTTGAGGACTA
455739 AAGGGTGAAA
Statistics
Matches: 113, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
56 23 0.20
57 1 0.01
60 4 0.04
61 59 0.52
62 26 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (57 bp):
CTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAAGACATCCTA
Found at i:467399 original size:13 final size:13
Alignment explanation
Indices: 467381--467406 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
467371 ACATTATGCT
467381 TTGTATCGATACA
1 TTGTATCGATACA
467394 TTGTATCGATACA
1 TTGTATCGATACA
467407 AGATCATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:467510 original size:13 final size:13
Alignment explanation
Indices: 467492--467544 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
467482 CGATACATGG
467492 TACATTGTATCGA
1 TACATTGTATCGA
467505 TACATTGTATCGA
1 TACATTGTATCGA
*
467518 GACA-TG-AT-G-
1 TACATTGTATCGA
467527 -A-ATTGTATCGA
1 TACATTGTATCGA
467538 TACATTG
1 TACATTG
467545 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:467523 original size:33 final size:33
Alignment explanation
Indices: 467476--467544 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
467466 CTACCACTGT
* *
467476 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCGAGACATGATGA-ATTGTATCGATACA
467509 TTGTATCGAGACATGATGAATTGTATCGATACA
1 TTGTATCGAGACATGATGAATTGTATCGATACA
467542 TTG
1 TTG
467545 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (33 bp):
TTGTATCGAGACATGATGAATTGTATCGATACA
Found at i:468370 original size:20 final size:21
Alignment explanation
Indices: 468345--468399 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
468335 GTATCGATAC
**
468345 AATGTATCGATACATGACCA-
1 AATGTATCGATACATGAAAAG
*
468365 AATGTATCGATACTTGAAAAG
1 AATGTATCGATACATGAAAAG
468386 AATGTATCGATACA
1 AATGTATCGATACA
468400 GGTCATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAG
Done.