Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold178
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1196275
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 89861 characters in sequence are not A, C, G, or T
File 6 of 6
Found at i:1014651 original size:20 final size:19
Alignment explanation
Indices: 1014626--1014698 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
1014616 AACACTTGTA
*
1014626 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
1014646 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
1014665 TGTATCGATACATGCACAAT
1 TGTATCGATACATGTTC-AT
1014685 TGTATCGATACATG
1 TGTATCGATACATG
1014699 AAACAGATTG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 17 0.35
20 30 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:1016157 original size:159 final size:158
Alignment explanation
Indices: 1015750--1016192 Score: 392
Period size: 159 Copynumber: 2.8 Consensus size: 158
1015740 ATTCATTTTG
* * * ** *
1015750 TGATTACGCACTACAAACACATTCTTCTCATTAAGATAAATGATATTGAACCTTTTCTTTTGCAT
1 TGATTAGGCACTA-AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTTATTTTGCAT
* * * * *
1015815 TGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGATAAGCATC
65 GGAAATCTTTTCTTTGCCCTATTTTTCATAAAATCAAAGTTCATCCTTTAAAAAAGACAAACATC
*
1015880 GATTATCATAATAGTCCCCGATCTTTTCA
130 GAATATCATAATAGTCCCCGATCTTTTCA
* * * * * * * ** * *
1015909 AGATTAGGAACCAAAACCACAATC-CCTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCA
1 TGATTAGGCACTAAAA-CACATTCTCC-TCATTAGGATAAATGATATTGATGCTTTTATTTTGCA
* * * * * * * * *
1015973 AGAAAAGCTTTTCGTT-CCACCATTTTTGATAGAATCAAAGTT-GTTCTCTTAAAAAAGACAAAC
64 TGGAAATCTTTTCTTTGCC-CTATTTTTCATAAAATCAAAGTTCATCCT-TTAAAAAAGACAAAC
* *
1016036 AT-GAATACTCATACTATTCCCC-ATTCTTTTCA
127 ATCGAATA-TCATAATAGTCCCCGA-TCTTTTCA
* *
1016068 TGATTAGGCAGTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCAT
1 TGATTAGGCACTA-AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTTATTTTGCAT
* * * * * * *
1016133 GGAAATCGTTTCTTTGCCCTATTTTCCTTGAAATCAATGTTCATCCGTTAAATAAGACAA
65 GGAAATCTTTTCTTTGCCCTATTTTTCATAAAATCAAAGTTCATCCTTTAAAAAAGACAA
1016193 GTATCGATTT
Statistics
Matches: 212, Mismatches: 62, Indels: 20
0.72 0.21 0.07
Matches are distributed among these distances:
158 14 0.07
159 189 0.89
160 9 0.04
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (158 bp):
TGATTAGGCACTAAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTTATTTTGCATG
GAAATCTTTTCTTTGCCCTATTTTTCATAAAATCAAAGTTCATCCTTTAAAAAAGACAAACATCG
AATATCATAATAGTCCCCGATCTTTTCA
Found at i:1016307 original size:160 final size:156
Alignment explanation
Indices: 1015822--1016307 Score: 403
Period size: 159 Copynumber: 3.1 Consensus size: 156
1015812 CATTGAAATC
*
1015822 TTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGATAAGCATCGATTATC
1 TTTTCTTTGCCCTATTTTTCTT-AAATCAAAGTTCATCC-TTAAATAAGACAAGCATCGATT-TC
* * *
1015887 -ATAATAGTCCCCGA-TCTTTTCAAGATTAGGAACCAAAACCACAATCCCTTAATTAGGATACAT
63 TATAACAG-CCCC-ATTCTTTTCAAGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACAT
* *
1015950 GACATTGATGCTTTGGTGTCGCAAGAAAAGC
126 GACATTGATGCTTTGGAGTCGCAAGAAAAGT
* * ** ** * * * *
1015981 TTTTCGTT-CCACCATTTTTGATAGAATCAAAGTTGTTCTCTTAAAAAAGACAAACAT-GAATAC
1 TTTTCTTTGCC-CTATTTTTCTTA-AATCAAAGTTCATC-CTTAAATAAGACAAGCATCGATTTC
* * * ** * * *
1016044 TCAT-ACTATTCCCCATTCTTTTCATGATTAGGCAGTATAAACACATTCTCC-TCATTAGGATAA
63 T-ATAAC-A-GCCCCATTCTTTTCAAGATTAGGAACCAAAAACACAATC-CCTTCATTAGGATAC
* * * * * * *
1016107 ATGATATTGATGATTT-TATTTTGCATGGAAA-T
124 ATGACATTGATGCTTTGGA-GTCGCAAGAAAAGT
* * * *
1016139 CGTTTCTTTGCCCTATTTTCCTTGAAATCAATGTTCATCCGTTAAATAAGACAAGTATCGATTTC
1 -TTTTCTTTGCCCTATTTTTCTT-AAATCAAAGTTCATCC-TTAAATAAGACAAGCATCGATTTC
* * **
1016204 TTGTAACAGCCCCTATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCCCTAGGATACAT
63 -TATAACAGCCCC-ATTCTTTTCAAGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACAT
1016269 GACATTGATGCTTTGGAGTCGCAAGAAAAGT
126 GACATTGATGCTTTGGAGTCGCAAGAAAAGT
1016300 TTTTCTTT
1 TTTTCTTT
1016308 CCATAGTTTT
Statistics
Matches: 241, Mismatches: 65, Indels: 41
0.69 0.19 0.12
Matches are distributed among these distances:
157 1 0.00
158 9 0.04
159 149 0.62
160 77 0.32
161 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (156 bp):
TTTTCTTTGCCCTATTTTTCTTAAATCAAAGTTCATCCTTAAATAAGACAAGCATCGATTTCTAT
AACAGCCCCATTCTTTTCAAGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACATGACAT
TGATGCTTTGGAGTCGCAAGAAAAGT
Found at i:1016356 original size:319 final size:317
Alignment explanation
Indices: 1015750--1016392 Score: 862
Period size: 318 Copynumber: 2.0 Consensus size: 317
1015740 ATTCATTTTG
* * * *
1015750 TGATTACGCACTACAAACACATTCTTCTCATTAAGATAAATGATATTGAACCTTTTCTTTTGCAT
1 TGATTAGGCACTACAAACACATTCTCCTCATTAAGATAAATGATATTGAACATTTTATTTTGCAT
* * * * *
1015815 TGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGATAAGCATC
66 GGAAATCGTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATC
* * *
1015880 GATTATCATAATAGTCCCCGATCTTTTCAAGATTAGGAACCAAAACCACAATCCCTTAATTAGGA
131 GATTATCATAACAGTCCCCGATCTTTTCAAGATTAGGAACCAAAAACACAATCCCTTAACTAGGA
* *
1015945 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCGTTCCACCATTTTTGATAGAATCA
196 TACATGACATTGATGCTTTGGAGTCGCAAGAAAAGCTTTTCGTTCCACCATTTTTGATAGAATAA
* * *
1016010 AAGTTGTTCTCTTAAAAAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCA
261 AAGTTGTCCTCTTAAAAAAGACAAACAT-AATACTCATACTAGTCCCCATTCTTTCCA
* * * **
1016068 TGATTAGGCAGTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCAT
1 TGATTAGGCACTACAAACACATTCTCCTCATTAAGATAAATGATATTGAACATTTTATTTTGCAT
* * *
1016133 GGAAATCGTTTCTTTGCCCTATTTTCCTTGAAATCAATGTTCATCCGTTAAATAAGACAAGTATC
66 GGAAATCGTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATC
* * * **
1016198 GATT-TCTTGTAACAG-CCCCTATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCCCTA
131 GATTATC--ATAACAGTCCCCGA-TCTTTTCAAGATTAGGAACCAAAAACACAATCCCTTAACTA
* * *
1016261 GGATACATGACATTGATGCTTTGGAGTCGCAAGAAAAGTTTTTCTTTCCA-TAGTTTTTGATAGA
193 GGATACATGACATTGATGCTTTGGAGTCGCAAGAAAAGCTTTTCGTTCCACCA-TTTTTGATAGA
* ** *
1016325 ATAAAAGTT-TGCCTTTTAAGTAAGACAAACATAATAGTCATACTAGTCCCCATTCTTTCCA
257 ATAAAAGTTGT-CCTCTTAAAAAAGACAAACATAATACTCATACTAGTCCCCATTCTTTCCA
*
1016386 AGATTAG
1 TGATTAG
1016393 CCACCATAAA
Statistics
Matches: 282, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
317 2 0.01
318 156 0.55
319 124 0.44
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (317 bp):
TGATTAGGCACTACAAACACATTCTCCTCATTAAGATAAATGATATTGAACATTTTATTTTGCAT
GGAAATCGTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATC
GATTATCATAACAGTCCCCGATCTTTTCAAGATTAGGAACCAAAAACACAATCCCTTAACTAGGA
TACATGACATTGATGCTTTGGAGTCGCAAGAAAAGCTTTTCGTTCCACCATTTTTGATAGAATAA
AAGTTGTCCTCTTAAAAAAGACAAACATAATACTCATACTAGTCCCCATTCTTTCCA
Found at i:1016669 original size:478 final size:477
Alignment explanation
Indices: 1016068--1016962 Score: 1237
Period size: 478 Copynumber: 1.9 Consensus size: 477
1016058 ATTCTTTTCA
* * *
1016068 TGATTAGGCAGTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCAT
1 TGATTAGGCAGTATAAACAAATTCTACACATTAGGATAAATGATATTGATGATTTTATTTTGCAT
* * * * *
1016133 GGAAATCGTTTCTTTGCCCTATTTTCCTTGAAATCAATGTTCATCCGTTAAATAAGACAAGTATC
66 GGAAATCGTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
** * *
1016198 GATTTCTTGTAACAG-CCCCTATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCCCTAG
131 GA-TTCTCATAACAGTCCCC-ATT-TTTTCAAGATTAGGAACCAAAAACACAATCCCTTCACTAG
* *
1016262 GATACATGACATTGATGCTTTGGAGTCGCAAGAAAAG-TTTTTCTTTCCAT-AGTTTTTGATAGA
193 GATACATGACATTGATGCTTTGGAGTCGCAAGAAAAGCTTATT-TTTCC-TCA-TTTTTGATAAA
* * *
1016325 ATAAAAGTTTGCCTTTTAAGTAAGACAAACAT-AATAGTCATAC-TAGTCCCCATTCTTTCCAAG
255 ATAAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACATAATCCCCATTCTTTCCAAG
*
1016388 ATTAGCCACCATAAACG-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAG
320 ATTAGCCACCATAAA-GATAGTCTACTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAG
*
1016452 AAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAATAGTTTGTGCCTCAAATGAGGCAAACATG
384 AAAGGCTTTCTTCCCAACAATTTTTATAAAGTCTAATAGTTTGTGCCTCAAATGAGGCAAACATG
1016517 GATTCTAGTGTTGATCTTCATTTATTTTG
449 GATTCTAGTGTTGATCTTCATTTATTTTG
* * *
1016546 TGATTAGGCATTATAAACAAATTCTACACTTTAGGATAAATGAT-TTCGATGATTTTCTTTTGCA
1 TGATTAGGCAGTATAAACAAATTCTACACATTAGGATAAATGATATT-GATGATTTTATTTTGCA
* *
1016610 TGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAGTAAGACAAGCAT
65 TGGAAATCGTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * *
1016675 CGATTCTCATAATAGTCCCCATTTTTTCAGGATTAGGAACCAAAAACACATTCCTTTCATTAGGA
130 CGATTCTCATAACAGTCCCCATTTTTTCAAGATTAGGAACCAAAAACACAATCCCTTCACTAGGA
* * **
1016740 TACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTATTTTTCCTCCATTTTTGATAAAATTG
195 TACATGACATTGATGCTTTGGAGTCGCAAGAAAAGCTTATTTTTCCT-CATTTTTGATAAAATAA
* * ****
1016805 AAGTTTGTCTCTTAAATCAGACAAACATGAATAGTCATACATAATCCCCATTCTTTTTGGGATTA
259 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACATAATCCCCATTCTTTCCAAGATTA
* * * * *
1016870 GGCACCATAAAGATAGTCTACTCATTAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAATG
324 GCCACCATAAAGATAGTCTACTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGG
* * *
1016935 TTTTTTTCCCACCAATTTTTATAAAGTC
389 CTTTCTTCCCAACAATTTTTATAAAGTC
1016963 CAAGAAAAGC
Statistics
Matches: 362, Mismatches: 47, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
475 1 0.00
476 110 0.30
477 31 0.09
478 220 0.61
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (477 bp):
TGATTAGGCAGTATAAACAAATTCTACACATTAGGATAAATGATATTGATGATTTTATTTTGCAT
GGAAATCGTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
GATTCTCATAACAGTCCCCATTTTTTCAAGATTAGGAACCAAAAACACAATCCCTTCACTAGGAT
ACATGACATTGATGCTTTGGAGTCGCAAGAAAAGCTTATTTTTCCTCATTTTTGATAAAATAAAA
GTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACATAATCCCCATTCTTTCCAAGATTAGC
CACCATAAAGATAGTCTACTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCT
TTCTTCCCAACAATTTTTATAAAGTCTAATAGTTTGTGCCTCAAATGAGGCAAACATGGATTCTA
GTGTTGATCTTCATTTATTTTG
Found at i:1017139 original size:197 final size:197
Alignment explanation
Indices: 1016766--1017151 Score: 508
Period size: 197 Copynumber: 2.0 Consensus size: 197
1016756 TTTGGTGTTG
* ** * *
1016766 CAAGAAAAGCTTATTTTTCCTCCATTTTTGATAAAATTGAAGTTTGTCTCTTAAATCAGACAAAC
1 CAAGAAAAGCTTATTTTTCCACCATTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAAC
* * ** * *
1016831 ATGAATAGTCATACATAATCCCCATTCTTTTTGGGATTAGGCACCATAAAGATAGTCTACTCATT
66 ATGAATACTCATACATAATCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTACTCACT
* * * * * *
1016896 AGGATACATGATATTGATGTTTTGGTTTTGCAAGAAATGTTTTTTTCCCACCAATTTTTATAAAG
131 AGGATACATGATATTGATGCTTTAGTTGTGCAAAAAAGGCTTTTTTCCCACCAATTTTTATAAAG
1016961 TC
196 TC
*
1016963 CAAGAAAAGCTT-TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTCAAA-AAGACAA
1 CAAGAAAAGCTTATT-TTTCCACCATTTTTGATAAAATCAAAGTTTGCCTCTT-AAATAAGACAA
* * * *
1017026 ACATGAATACTCATAC-TATTCCCCATCCTTTTCATGATTAGGCACTATAAACATAGTCTTCTCA
64 ACATGAATACTCATACATAATCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTACTCA
* *
1017090 CTAGTATACATGATATTGGTGCTTTAGTTGTGCAATAAAAGGCTTTTTTCCCACCAATTTTT
129 CTAGGATACATGATATTGATGCTTTAGTTGTGCAA-AAAAGGCTTTTTTCCCACCAATTTTT
1017152 GCAAAGTCTA
Statistics
Matches: 162, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
196 71 0.44
197 88 0.54
198 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (197 bp):
CAAGAAAAGCTTATTTTTCCACCATTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAAC
ATGAATACTCATACATAATCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTACTCACT
AGGATACATGATATTGATGCTTTAGTTGTGCAAAAAAGGCTTTTTTCCCACCAATTTTTATAAAG
TC
Found at i:1017583 original size:674 final size:674
Alignment explanation
Indices: 1016285--1017636 Score: 1880
Period size: 674 Copynumber: 2.0 Consensus size: 674
1016275 GATGCTTTGG
* * * *
1016285 AGTCGCAAGAAAAGTTTTTCTTTCCATAGTTTTTGATAGAATAAAAGTTTGCCTTTTAAGTAAGA
1 AGTCGCAAGAAAAGCTTTTCTTTCCACAGTTTTTGATAGAATAAAAGTTTGCCTTTCAAGAAAGA
* * *
1016350 CAAACATAATAGTCATACTAGTCCCCATTCTTTCCAAGATTAGCCACCATAAACGTAGTCTTCTC
66 CAAACATAATACTCATACTAGTCCCCATCCTTTCCAAGATTAGCCACCATAAACATAGTCTTCTC
* * * *
1016415 ATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAACAATTTTTGTA
131 ATAAGGATACACGATATTGATGCTTTAGTTGTGCAAAAAAGGCTTTCTTCCCAACAATTTTTGCA
* * * * **
1016480 AAGTCTAATAGTTTGTGCCTCAAATGAGGCAAACATGGATTCTAGTGTTGATCTTCATTTATTTT
196 AAGTCTAATAGTTCGCGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTTATTTT
* * *
1016545 GTGATTAGGCATTATAAACAAATTCTACACTTTAGGATAAATGATTTCGATGATTTTCTTTTGCA
261 ATGATTAGGCAGTATAAACAAATTCTACACATTAGGATAAATGATTTCGATGATTTTCTTTTGCA
* * *
1016610 TGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAGTAAGACAAGCAT
326 TGGAAATATTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCAT
*
1016675 CGATTCTCATAATAGTCCCCATTTTTTCAGGATTAGGAACCAAAAACACATTCCTTTCATTAGGA
391 CGATTCTCATAATAGTCCCCATTTTTTCAGGATTAGGAACCAAAAACACATTCCCTTCATTAGGA
**
1016740 TACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTATTTTTCCTCCATTTTTGATAAAATTG
456 TACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTATTTTTCCTCCATTTTTGATAAAATCA
** * * *
1016805 AAGTTTGTCTCTTAAATCAGACAAACATGAATAGTCATACATAATCCCCATTCTTTTTGGGATTA
521 AAGTTTCCCTCTTAAATCAGACAAACATGAATAGTCATACATAATCCCAATTCTTTTCGAGATTA
* * * * ** *
1016870 GGCACCATAAAGATAGTCTACTCATTAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAATG
586 GACACCATAAACATAGTCTACTCATTAAGATACATGATATTGATGTTTAGGTTTCACAAGAAAGG
*
1016935 -TTTTTTTCCCACCAATTTTTATAA
651 CATTTTTT-CCACCAATTTTTATAA
*
1016959 AGTC-CAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGCCTCTTCAA-AAA
1 AGTCGCAAGAAAAGCTTTTCTTTCCA-CAGTTTTTGATAGAATAAAAGTTTGCCT-TTCAAGAAA
* * * * *
1017021 GACAAACATGAATACTCATACTATTCCCCATCCTTTTCATGATTAGGCACTATAAACATAGTCTT
64 GACAAACAT-AATACTCATACTAGTCCCCATCCTTTCCAAGATTAGCCACCATAAACATAGTCTT
* * * * *
1017086 CTCACT-AGTATACATGATATTGGTGCTTTAGTTGTGCAATAAAAGGCTTTTTTCCCACCAATTT
128 CTCA-TAAGGATACACGATATTGATGCTTTAGTTGTGCAA-AAAAGGCTTTCTTCCCAACAATTT
* *
1017150 TTGCAAAGTCT-A-AGTTCGCGCCTCAAATGAGACAAACATGGATTCCAGTAATGATTTTCTTTT
191 TTGCAAAGTCTAATAGTTCGCGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTT
* * *
1017213 ATTTTATGATTAGGCAGTATAAACACATTCTCCTCATTAGGATAAATGATATT-GATGATTTTCT
256 ATTTTATGATTAGGCAGTATAAACAAATTCTACACATTAGGATAAATGAT-TTCGATGATTTTCT
* * *
1017277 TTTGCTTGGAAATATTTTCTTTGCCCCTATTTTTCTTAAAATCAAAGTTCATCACTTAAATAAGA
320 TTTGCATGGAAATATTTTCTTT-ACCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGA
* ** * * *
1017342 CAAGCATCGATTCTCGTAATAGTTTCCTTTCTTTTCAGGATT-GAGAGCCAAAAAGACATTCCCT
384 CAAGCATCGATTCTCATAATAGTCCCCATT-TTTTCAGGATTAG-GAACCAAAAACACATTCCCT
* *
1017406 TCATTAGGATTCATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTT-TTTTTCCTCCGTTTTTG
447 TCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTATTTTTCCTCCATTTTTG
* * *
1017470 ATAGAATCAAAGTTTCCCTCTTCAATTAGACAAACATGAATAGTCATACATAATCCCAATTCTTT
512 ATAAAATCAAAGTTTCCCTCTTAAATCAGACAAACATGAATAGTCATACATAATCCCAATTCTTT
* * *
1017535 TCGAGATTAGACACTATAAACATATTCTTCTCATTAAGATGA-ATGATATTGATGTTTAGGTTTC
577 TCGAGATTAGACACCATAAACATAGTCTACTCATTAAGAT-ACATGATATTGATGTTTAGGTTTC
1017599 ACAAGAAAGGCATTTTTTCCACCAATTTTTATAA
641 ACAAGAAAGGCATTTTTTCCACCAATTTTTATAA
1017633 AGTC
1 AGTC
1017637 TAAGTCTATG
Statistics
Matches: 595, Mismatches: 72, Indels: 22
0.86 0.10 0.03
Matches are distributed among these distances:
673 173 0.29
674 309 0.52
675 113 0.19
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (674 bp):
AGTCGCAAGAAAAGCTTTTCTTTCCACAGTTTTTGATAGAATAAAAGTTTGCCTTTCAAGAAAGA
CAAACATAATACTCATACTAGTCCCCATCCTTTCCAAGATTAGCCACCATAAACATAGTCTTCTC
ATAAGGATACACGATATTGATGCTTTAGTTGTGCAAAAAAGGCTTTCTTCCCAACAATTTTTGCA
AAGTCTAATAGTTCGCGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTTATTTT
ATGATTAGGCAGTATAAACAAATTCTACACATTAGGATAAATGATTTCGATGATTTTCTTTTGCA
TGGAAATATTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCAT
CGATTCTCATAATAGTCCCCATTTTTTCAGGATTAGGAACCAAAAACACATTCCCTTCATTAGGA
TACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTATTTTTCCTCCATTTTTGATAAAATCA
AAGTTTCCCTCTTAAATCAGACAAACATGAATAGTCATACATAATCCCAATTCTTTTCGAGATTA
GACACCATAAACATAGTCTACTCATTAAGATACATGATATTGATGTTTAGGTTTCACAAGAAAGG
CATTTTTTCCACCAATTTTTATAA
Found at i:1017888 original size:477 final size:474
Alignment explanation
Indices: 1016963--1024188 Score: 3912
Period size: 477 Copynumber: 14.9 Consensus size: 474
1016953 TTATAAAGTC
*
1016963 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTCAAAAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * * *
1017028 ATGAATACTCATACTATTCCCCATCCTTTTCATGATTAGGCACTATAAACATAGTCTTCTCACT-
66 ATGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAGTCTTCTCATTA
* * *
1017092 AGTATACATGATATTGGTGCTTTAGTTGTGCA-ATA-AAAGGCTTTTTTCCCACCAATTTTTGCA
130 AG-ATACATGATATTGATGCTTTGGTT-T-CACA-AGAAAGGCTTTTTT-CCACCAATTTTTGTA
* * * * *
1017155 AAGTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCCAGTAATGAT-TTTCTTTTATTTTA
190 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT-ATTCATTTTG
* *
1017219 TGATTAGGCAGTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTT
254 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
1017284 GGAAATATTTTCTTTGCCCCTATTTTTCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCAT
319 GGAAATCTTTTCTTTG-CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * * * *
1017349 CGATTCTCGTAATAGTTTCCT-TTCTTTTCAGGATTGAGAGCCAAAAAGACATTCCC-TTCATTA
383 CGATTCTCGTAACAG-TCCCTATTCTTTTCAAGATTGGGA-ACTAAAACACATTCCCTTTCATTA
* *
1017412 GGATTCATGACATTGATGCTTTGGTGTTG
446 GGATACATGACATTGATGCTTTGGTGTCG
* * * * **
1017441 CAAGAAAAGCTTTT-TTTCCTCCGTTTTTGATAGAATCAAAGTTTCCCTCTTCAATTAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * * * *
1017505 ATGAATAGTCATACATAATCCCAATTCTTTTCGAGATTAGACACTATAAACATATTCTTCTCATT
66 ATGAATACTCATAC-TAATCCCCATTCTTTTC-AGATTAGGCACCATAAACATAGTCTTCTCATT
*
1017570 AAGATGA-ATGATATTGATG-TTTAGGTTTCACAAGAAAGGCATTTTTTCCACCAATTTTTATAA
129 AAGAT-ACATGATATTGATGCTTT-GGTTTCACAAGAAAGGC-TTTTTTCCACCAATTTTTGTAA
* * *
1017633 AGTCTAAG-TCTATGCCTCAAATGAGAGAAACATGGATTCAAGTAATGATCTTTATTCATTTTGT
191 AGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGT
* * * ** *
1017697 GATTACGCACTATAAACACATTCTCCTCATTTGGATAAATGATATTAAAAATTTTCTTTTTCATG
255 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* *
1017762 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAATTAAGACAAGTATCG
320 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
1017827 ATTCTTGTAACAGTCCCTATT-TTTCTCAAGGTTGGGAACGTAAAACACA-TCCCTTTTCATTAG
385 ATTCTCGTAACAGTCCCTATTCTTT-TCAAGATTGGGAAC-TAAAACACATTCCC-TTTCATTAG
* *
1017890 GATGCATGACATTGATGCTTTGGTGTCA
447 GATACATGACATTGATGCTTTGGTGTCG
* * * *
1017918 TAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAA-TTTGTCTCTTAAAAAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * *
1017982 ATGAATACTCAAACTAATCCCCTTTTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTCTTT
66 ATGAATACTCATACTAATCCCC-ATTCTTTTC-AGATTAGGCACCATAAACATAGTCTTCTCATT
* * * * * **
1018047 AGGATGCATGATATTAATGTTTTGCTTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAG
129 AAGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTC-CACCAATTTTTGTAAAG
* * * * * *
1018112 TCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTTTGGCAATGATCTTCATTCATTTTGTGAT
193 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
* * * * * *
1018177 TACGAACTATAAACACGTTCTCCTCATTAGGATAAATGATATTGATCACTTTCTTTTGCTTGGAA
258 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * *
1018242 TTCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * *
1018307 CTCGTAACAGTCTCTATTCTTTTTAGGATT-GGAAGCCTAAAACAAATTCCC-TTCATTAGGATA
388 CTCGTAACAGTCCCTATTCTTTTCAAGATTGGGAA--CTAAAACACATTCCCTTTCATTAGGATA
* * *
1018370 AATGACATTGATGCTTTGGTATCA
451 CATGACATTGATGCTTTGGTGTCG
* * * *
1018394 CAAGAAAAGCTCTTCTTTCCACCATTTTTTTATAGAATCAAAGTTTGTCTCTTAAAAAAGATAAA
1 CAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAA
* * * * * *
1018459 CATGAATACTCATACTATTCCCAATTCTTTTCATGTTTAGGGACCATAAACCTAGTTTTCTCATT
65 CATGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAGTCTTCTCATT
* ** * *
1018524 AGGATACACAATATTGGTGCTTTGGTTT-AGCAAGAAAGGCTTTTTTCCCACCAATTCTTGTAAA
129 AAGATACATGATATTGATGCTTTGGTTTCA-CAAGAAAGGCTTTTTT-CCACCAATTTTTGTAAA
* * * * * *
1018588 GTCTAAGTTCATG-CTATAAATAAGAGAAACATGGATTCTAGTAATTATCTTCT-TTCATTTTAT
192 GTCTAAGTTCGTGCCT-CAAATGAGACAAACATGGATTCTAGTAATGATCTT-TATTCATTTTGT
* * * *
1018651 GATTAGGCACAATAAACATATTCTCCTCAATAGGATAAATGATATTGAAGATTTTCTTTTGCATG
255 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * **
1018716 GGAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATCTTAAATAAGACAAGCATCG
320 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* ** * * *
1018781 ATTCTCGTAACAGTCTAC-ATTAC-TTTCAAGATTGAAAACCAAAAGAACATTCCCTCT-ATTAG
385 ATTCTCGTAACAGTC-CCTATT-CTTTTCAAGATTGGGAACTAAAA-CACATTCCCTTTCATTAG
* * *
1018843 GATACATGACATTGATGATTTGGTATTG
447 GATACATGACATTGATGCTTTGGTGTCG
* * *
1018871 CAAGAAAAGCTTTTCTTTCCACCATATTTGATAGAACCAAAGTTTGTCTCTT-AAAAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * * *
1018935 ATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATGAACATAGCCTTCTCACT-
66 ATGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAGTCTTCTCATTA
* ** * *
1018999 AGTATACATGACATTGGCGCTTTGGTTGC-CTAAGAAAGGCTTTGTTCCCACCAATTTTTGTAAA
130 AG-ATACATGATATTGATGCTTTGGTTTCAC-AAGAAAGGCTTT-TTTCCACCAATTTTTGTAAA
* * * *
1019063 GTCTAAGTTCGTGCCTCAAATGAGACAAGCAGGGATTCTAGTAATTATCTTCT-TTCATTTTATG
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-TATTCATTTTGTG
* * *
1019127 ATTAGGCAGTATAATCACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG
256 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG
* *
1019192 AAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATATGACAAGCATCGA
321 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * * *** ** * * *
1019257 TTCTCATAACAGCCCCTATTCTTTTCAAGATTGGG-A-TATATGGCATT--GATGC-TTTGGTGT
386 TTCTCGTAACAGTCCCTATTCTTTTCAAGATTGGGAACTAAAACACATTCCCTTTCATTAGG-AT
* * * * *
1019317 CGCAAGAAAAGTT--TTCTTTAGGATATACG
450 -ACATG-ACA-TTGATGCTTT-GG-TGT-CG
* * * * *
1019346 ACATTG--ATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATAAAAGT
1 -CA-AGAAAAGC--T------------------TTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * *
1019409 TTGCATCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAAGATTAGGCAC
44 TTGCCTCTTAAAAAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC-AGATTAGGCAC
* *
1019474 CATAAACATAGTCTTCTCA-TAAGGATACATGATATTGATGCTTTGGCTTCGCAAGAAAGGCTTT
108 CATAAACATAGTCTTCTCATTAA-GATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT
* * * *
1019538 CTT-C-CCAATAATTTTGTAAAGTCTAATAGTTCATGCCTAAAATGAGGCAAACATGGATTCTAG
172 TTTCCACCAAT--TTTTGTAAAGTCT-A-AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * ** * * * * *
1019601 TATTGTTGTCCATTCATTTTGTGATTAGGCATTATAAACACATTCTGCACTTTACGATAAATGAT
233 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * *
1019666 TTTGATGA-TTTCTTTTGCATGGAAA-GTTTTCTTTACCCTATTTTCCTTAAAATCAATGTTCAT
298 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * *
1019729 CCTTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC-ATTTTTTTCAAGATTGGGAACCAA
363 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC-CCTATTCTTTTCAAGATTGGGAA-CTA
* *
1019793 AAACGCATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTTG
426 AAACACATTCCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * * * **
1019841 CAAGAAAAGTTTTTTTTTTCCATCGTTTTTCATAGAATCAAAGTTTTCCTCTTAAATCAGACAAA
1 CAAGAAAAG-CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAA
* * * * * *
1019906 CATGAATAGTCATACATAATCCCTATTCTTTTCGGGATAAGGCACCATAAAGATAGTCTTCCCAT
65 CATGAATACTCATAC-TAATCCCCATTCTTTTC-AGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * * * *
1019971 TAGGATACATGATATTTATGTTTTGGTTTCATAAGAAATGCTTTTTTCCCACCAATCTTTATAAA
128 TAAGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTT-CCACCAATTTTTGTAAA
* * * * * *
1020036 GTCAAACTTCGTGCCTCAAATGAGACAAGCATGGATTCTAGTACTGATCTTCATTCATTTCGTGA
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGA
* * * *
1020101 TTACGCACTACAAACACATTCTCCTCATTAAGATAAATGATATTGAAGATTTTCTTTTGCATGGA
257 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * * *
1020166 AATCTTTTCTTTGCCTTAATTTCCCTAAAATTAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
322 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * *
1020231 TCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAACCACATT-CCTTTAATTAGGATA
387 TCTCGTAACAGTCCCTATTCTTTTCAAGATTGGGAACTAAAA-CACATTCCCTTTCATTAGGATA
1020295 CATG--A-TGATGCTTTGGTGTCG
451 CATGACATTGATGCTTTGGTGTCG
* **** **** * * * * *
1020316 CAAGAAAAGCTTTTCTTTCCACTATTCCCCATTCTTTTC-ACGATTAGGCAC-CATAAACATAGT
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGA-TAGAATCAAAG-TT-TGC-CTCTTAAA-AAAGA
** * * * * **** * ** *
1020379 C-TTC-TCACTAGT-ATACATGATATTGATGC-TTT-AG-TT-GTGCA--ATAAA-AGGCTTTTT
61 CAAACATGAATACTCATAC-TAATCCCCATTCTTTTCAGATTAG-GCACCATAAACA---TAGTC
* ** *** * * * ** ** ***
1020434 TTCCCA-CCA-ATTTTTGTAAAGTCT-AAG-TTCGTGCCTCA-AATGAGATAAACATGGATTCCA
121 TTCTCATTAAGATACATG-ATA-T-TGATGCTTTG-GTTTCACAA-GA-A-AGGC-TTTTTTCCA
** * ** * * * * * **
1020494 GTAATGATTTTCTTTTATTTTATGATT--AG-C-CAGTATGA-AC--ACAT-TCTCCTCATTAGG
178 CCAAT--TTTT-GTAAAGTCTAAG-TTCGTGCCTCA-AATGAGACAAACATGGAT--TC--TA-G
* * * * * * * ** ****
1020551 ATAAATGATATTGA-TGA-TTT-T-CTTATGC-CTAGAAATATTTTCTTTGCC-CTATTTTTCTT
233 -T-AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTC--T-CCTC-A-TTAGGAT
* * * * * *** ** * * *
1020610 AAAATCAAAGTTTATCACTTAAATAAG-AT--AAGCATCGATTTTCGTAATAGTTTCCTTTCTTT
291 -AAATGATA-TTGATGATTTTCTTTTGCATGGAA--ATC--TTTTC----T--TTGCC-CTATTT
* ** ** *** * * * * * * * *
1020672 TCAAGATTGGGAGCCAAAAACACATTCTCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTA
343 TC---CTT-AAAATC-AAAGTTCA-TCCCTTAAATA--AGACAAG-CATCGAT--TCT--CGTAA
** * * * ** ** * * * *
1020737 CAAGAAAAGCTTTTTCTTTCCACCATTTTTG-A-TAGAATCTA-AGTTTGCCTCTTCAATCAGAC
395 C-AG---TCCCTATTCTTTTCAAGA-TTGGGAACTA-AAAC-ACA--TTCCCT-TTC-ATTAG-G
* * * ** *
1020799 AAACATGAATAGTCATACATAATCCCTATTCTTTTCGG
448 ATACATG---A--CAT---TGAT-GCT-TTGGTGTC-G
* ** * *** * * ** * * * ** **
1020837 GATAG-GCACCATAAACGTAGTCCTCTCA-TTAAGATACATGATATTGATATTTTGGTTTCGCAA
1 CA-AGAAAAGC-TTTTC-T-TTCCAC-CATTTTTGAT--A-GA-A-TCAAAGTTT-GCCTCTTAA
* * ** ** ** * ** * * * *
1020900 GAAAGGCATTTTTCCCACCAATTTTTATA--AAGT-CTAAGTCTGTGCCTCA-AATA---A-GAT
55 AAAAGACA-----AACATGAATACTCATACTAA-TCCCCATTCT-T--TTCAGATTAGGCACCAT
* ** * * * * ** *
1020957 AAATAT-GGATTCT-AATAATGAT-C-T--TCATTCAT--TTTGTGATTATGCACTATAAACACA
111 AAACATAGTCTTCTCATTAA-GATACATGAT-ATTGATGCTTTG-G-TT-T-CACAAGAAAGGCT
* * ** *** ** ** ** * * * **** *** * *
1021014 TTCTCCTCATTAGGATAAATGATATTGAATATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
170 TTTTTC-CACCA--ATTTTTG-TAAAGTCTAAGTTC--GTGCCT-CAAAT-GAGAC--AAACATG
** * * * * * ** * ** *
1021079 TTTTCCTTAAAATCAAAGTCTATCCCTTAATTAAGATAAGCATCGATTA-TCA-TAATAGTTCCC
225 GATT-C-T--AGT--AA-T-GAT--CTTTATTCA-TTTTG--T-GATTAGGCACT-ATA-AACAC
* ** * * * *
1021142 ACTCTTTTCAAGATTGAGAATGTAAAACAGATTCCTTTTTCATTAAGATAAAAGACATTGATGCT
274 ATTCTCCTC---ATT-AGGA--T-AAA-TGA-----TA----TT--GAT----G--ATT--TTCT
* * * * * * ** *
1021207 TTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT-TTGTAGAATCAAAGTTTGTCTCTTAA
312 TT----T-GCATGGAAATCTTTTCTTTGCC-CTATTTTCCT-TAAAATCAAAGTTCATCCCTTAA
* * * * * **** *
1021270 A-ATAGACAAACAT-GAATACTCAT-ACTATTCCCCATTCTTTTCGTTTTTAGGG-ACCATAAAC
370 ATA-AGACAAGCATCG-ATTCTCGTAAC-AGTCCCTATTCTTTTCAAGATT-GGGAACTA-AAAC
* * * * * * *
1021331 ATAGT--CTTCTCATTAGGATACATGATATTGGTGCTCTGGTTTAG
430 ACATTCCCTT-TCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * ** *
1021375 CAAGAAAGGCTTTT-TTCCCACCAATTCTTG-TA-AAGTCTAAGTTTATGCCTC--AAATGAGAG
1 CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAG-TT-TGCCTCTTAAAAAAGAC
* * * * ** * * * * * * *
1021435 AAACATGGATTCT-AGTAATGATCTTCTTTCAATTT-ATGACTAGGCACAATAAACACATTCTCC
62 AAACATGAATACTCA-TACTAATCCCCATTC-TTTTCA-GATTAGGCACCATAAACATAGTCTTC
* * * * ** * *** * *
1021498 TCATTAGGATAAATGATATTGAAGACTTT-CTTTTGCATGAAAATTTTTTCTTTGC-CCTATTTT
124 TCATTAAGATACATGATATTGATG-CTTTGGTTTCACAAG-AAAGGCTTT-TTTCCACCAATTTT
* * * * * * * * * * ***
1021561 TCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAT-AGTCCCCATTC-
186 TGT-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA-TCTTTATTCA
** * * * * * * * * * **
1021624 TTTTCAAGATTGGGAACCAAAAACACATTC-CCTACATTGGGATACACGACATTGATGCTTTGGT
249 TTTT-GTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCT
* ** * * * * ** *** * ** *
1021688 GTCACA-AGAAAGGCTCTTCTTT-CCACCAGTTTT-GATAGTGTAAAAGTTTTTCTCTTAAATAA
312 TTTGCATGGAAA-TCTTTTCTTTGCC-CTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
1021750 GACAAACAT-GAATAGTCATAC-TAATCCACACTCTTTTCAATCTCCATTCTTTTCAGGATTGGG
374 GACAAGCATCG-AT--TC-T-CGT-A---ACAGTC----C---CT--ATTCTTTTCAAGATTGGG
** * *
1021813 AACCTAAAATGCATTCCC-TTCATTAGGATACTTGACATTGATGCTTTGGTATCG
421 AA-CTAAAACACATTCCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * * *
1021867 CTAGAAGAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGATAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * * *
1021932 ATAAATACTCATACTATTCCCTATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAGTCTTCTCATTA
* * * **
1021997 GGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGT
130 AGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTC-CACCAATTTTTGTAAAGT
* * * * *
1022062 CTAAGTTCATGACTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
194 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* * * ** * *
1022127 AGGCACTATAAGCACAGTCTCATCATTTCGATAAATGATATTGATGATTTTTTTTTTGCATGAAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAA
* * *
1022192 ATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATT
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * *
1022257 CTCATAGCAGTCCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCTC-TTCATTAGGATAT
388 CTCGTAACAGTCCCTATTCTTTTCAAGATTGGGAA-CTAAAACACATTCCCTTTCATTAGGATAC
** *
1022320 ACAACATTCATGCTTT-G-GTCG
452 ATGACATTGATGCTTTGGTGTCG
* * *
1022341 CAAGAAAAGCTTTTCTTTTCACCCTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * * * * * *
1022406 ATAAACAGTCATACTAATTCCCATTGTTTTCGGGATTAGGCACTATAAACATAGTCTTCTCA-TA
66 ATGAATACTCATACTAATCCCCATTCTTTTC-AGATTAGGCACCATAAACATAGTCTTCTCATTA
* ** * * *
1022470 AGGATGCATGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTTCTTCTGACCAATTTTTGTAAAG
130 A-GATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTC-CACCAATTTTTGTAAAG
* * * * * * * *
1022535 TTTATGTCCATGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTTTGAT
193 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
* * *
1022600 TAGGCACTGTGAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTC-TTTGACAT-GA
258 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG-CATGGA
* *
1022663 AATCTTCTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAA-AAGACAAGCATCGAT
322 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * *
1022727 TCTCGTAACAGTCTCC-ATTCTTTTCAAGATTAGGAACCAAAAACACATT-CCTTTCATTAAGAT
387 TCTCGTAACAGTC-CCTATTCTTTTCAAGATTGGGAA-CTAAAACACATTCCCTTTCATTAGGAT
* *
1022790 ACTTGACATTGATGCTTTGGTGTTG
450 ACATGACATTGATGCTTTGGTGTCG
* * * *
1022815 CTAG-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* ** * * * *
1022879 ATGAATACACATACTCTTCCCCATTCTTTTCACCATTACGCACCATAAACTTAGTCTTCTTATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAGTCTTCTCATTA
* * * ** *
1022944 GGATACACGATATTGGTGCTTTGGTTTCTTAAGAAGGGCTTTTTTCCCACCAATTTTTGTAAAGT
130 AGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTT-CCACCAATTTTTGTAAAGT
* * * * *
1023009 CTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCATTCATTTTGTGATT
194 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* * * * * * * * *
1023074 AGGAACTATGAGCACATTTTCGTCATTTGGATAAATGATGTCGATGATTTT-TTTTGCGTGGAAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* ** *
1023138 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTCAATAAGACAATAATCAATTC
324 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * *
1023203 CCGTAACAGTCCCCATT-TCTTTCAAGATTGGGAACCAAAAACACATTCCC-TTCATTAGGACAC
389 TCGTAACAGTCCCTATTCT-TTTCAAGATTGGGAA-CTAAAACACATTCCCTTTCATTAGGATAC
*
1023266 AAGACATTGATGCTTTGGTGTCG
452 ATGACATTGATGCTTTGGTGTCG
* * * *
1023289 CAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
* * ** * * * *
1023354 AAGAATACACATACTCTTCCCCATTGTTTTCATGATTAGGCTCCATAAACTTATTCTTCTCATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAGTCTTCTCATTA
* * ** ** * * *
1023419 GGATACACGATATTGGCGCTTT-GTTTCTTAACAAAGGTTTTTTTCTCACTAATTTTTGTAAAGT
130 AGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTC-CACCAATTTTTGTAAAGT
** * *
1023483 CTAAGTTCGTGCCTCAAACAAGACAAACATGGATTCTAGTAATTAT-TTTCGTTCATTTTGTGAT
194 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTT-ATTCATTTTGTGAT
* * *
1023547 TAGGCACTATAAGCACAGTCTCCTCTTTAGGATAAATGATATTGATGATTTT-TTTTGCATGGAA
258 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * * *
1023611 ATCTTTTCTTTACCCCATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGAATCAATT
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * * *
1023676 CTCATAACAATCCCCATTCTTTTCAATATTGGGAACCAAAAACACATTCCC-ATCATTAGGATAC
388 CTCGTAACAGTCCCTATTCTTTTCAAGATTGGGAA-CTAAAACACATTCCCTTTCATTAGGATAC
* * *
1023740 ACGACATTCATGCTTTGGTGTCA
452 ATGACATTGATGCTTTGGTGTCG
* * * * *
1023763 TAAGAAACA-CTTTTCTTTTCAACGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAA
1 CAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAA
* * * * *
1023827 CATAAATAGTCATACTAATCTCCATTCTTTTCGGGATTAGGCACCATAAATATAGTCTTCTCA-T
65 CATGAATACTCATACTAATCCCCATTCTTTTC-AGATTAGGCACCATAAACATAGTCTTCTCATT
* * **** * *
1023891 AAGGATGCATGATATTGATGCTTTAGTTTTGTTAGAAAGGCTTTCTTCCAACCAATTTTTGTGAA
129 AA-GATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCC-ACCAATTTTTGTAAA
* * * * *
1023956 GTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATTATCTTCATTCATTTTGTGA
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGA
* * * * *
1024021 TTACGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCGTGAA
257 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *
1024086 AATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGAT
322 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * ** * *
1024151 TCTCATAATAGTTTCTATTATTTTCAGGATTGGGAACT
387 TCTCGTAACAGTCCCTATTCTTTTCAAGATTGGGAACT
1024189 GATGAGAACC
Statistics
Matches: 5174, Mismatches: 1161, Indels: 829
0.72 0.16 0.12
Matches are distributed among these distances:
467 1 0.00
468 9 0.00
469 9 0.00
470 28 0.01
471 41 0.01
472 138 0.03
473 343 0.07
474 811 0.16
475 650 0.13
476 574 0.11
477 1031 0.20
478 285 0.06
479 8 0.00
480 6 0.00
481 4 0.00
482 2 0.00
483 5 0.00
484 6 0.00
485 7 0.00
486 4 0.00
487 1 0.00
488 1 0.00
489 6 0.00
490 8 0.00
491 22 0.00
492 164 0.03
493 162 0.03
494 19 0.00
495 137 0.03
496 128 0.02
497 95 0.02
498 19 0.00
499 5 0.00
500 6 0.00
501 5 0.00
502 15 0.00
503 5 0.00
504 5 0.00
505 5 0.00
506 4 0.00
507 7 0.00
508 10 0.00
509 3 0.00
510 1 0.00
512 4 0.00
513 1 0.00
514 2 0.00
515 1 0.00
516 2 0.00
518 4 0.00
519 2 0.00
520 6 0.00
521 5 0.00
522 10 0.00
523 11 0.00
524 11 0.00
525 10 0.00
526 3 0.00
527 6 0.00
528 36 0.01
529 24 0.00
530 13 0.00
531 15 0.00
532 19 0.00
533 5 0.00
534 15 0.00
535 15 0.00
536 3 0.00
537 5 0.00
538 3 0.00
539 8 0.00
540 8 0.00
541 6 0.00
542 2 0.00
544 5 0.00
545 2 0.00
546 1 0.00
547 1 0.00
549 6 0.00
550 6 0.00
551 8 0.00
552 7 0.00
553 6 0.00
554 11 0.00
555 10 0.00
556 1 0.00
557 3 0.00
558 1 0.00
560 1 0.00
561 1 0.00
562 5 0.00
563 5 0.00
564 3 0.00
565 7 0.00
566 5 0.00
567 4 0.00
568 1 0.00
571 6 0.00
572 4 0.00
574 3 0.00
578 5 0.00
579 1 0.00
580 3 0.00
582 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAC
ATGAATACTCATACTAATCCCCATTCTTTTCAGATTAGGCACCATAAACATAGTCTTCTCATTAA
GATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCACCAATTTTTGTAAAGTCT
AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAG
GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
GTAACAGTCCCTATTCTTTTCAAGATTGGGAACTAAAACACATTCCCTTTCATTAGGATACATGA
CATTGATGCTTTGGTGTCG
Found at i:1018919 original size:954 final size:947
Alignment explanation
Indices: 1016963--1024181 Score: 4526
Period size: 954 Copynumber: 7.4 Consensus size: 947
1016953 TTATAAAGTC
* *
1016963 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTCAAAAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
* * *
1017028 ATGAATACTCATACTATTCCCCATCCTTTTCATGATTAGGCACTATAAACATAGTCTTCTCACTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCACTA
* * * * * *
1017093 GTATACATGATATTGGTGCTTTAGTTGTGCAATAAAAGGCTTTTTTCCCACCAATTTTTGCAAAG
131 GGATACATGATATTGATG-TTTTGTTTTGCAA-GAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * * *
1017158 TCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCCAGTAATGATTTTCTTTTATTTTATGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGAT
* * *
1017223 TAGGCAGTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGGAA
259 TACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * *
1017288 ATATTTTCTTTGCCCCTATTTTTCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGAT
324 ATCTTTTCTTTG-CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * * *
1017353 TCTCGTAATAGTTTCCT-TTCTTTTCAGGATT--GAGAGCCAAAAAGACATTCCCTTCATTAGGA
388 TCTCGTAACAG-TCCCTATTCTTTTCAAGATTAGGAGAGCCTAAAACACATTCCCTTCATTAGGA
* ** *
1017415 TTCATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTCCTCCGTTTTTGATAGAATCA
452 TACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * *
1017479 AAGTTTCCCTCTTCAATTAGACAAACATGAATAGTCATACATAATCCCAATTCTTTTCGAGATTA
517 AAGTTT-GCTCTTAAATAAGACAAACATGAATAGTCATAC-TAATCCCAATTCTTTTC-AGATTA
* * *
1017544 GACACTATAAACATA-TTCTTCTCATTAAGATGA-ATGATATTGATG-TTTAGGTTTCA-CAAGA
579 GGCACCATAAACATAGTT-TTCTCATTAGGAT-ACATGATATTGATGCTTT-GGTTT-AGCAAGA
* *
1017605 AAGGCATTTTTT-CCACCAATTTTTATAAAGTCTAAG-TCTATGCCTCAAATGAGAGAAACATGG
640 AAGGC-TTTTTTCCCACCAA-TTTTGTAAAGTCTAAGTTC-ATGCCTAAAATGAGAGAAACATGG
* * * *
1017668 ATTCAAGTAATGATCTT-TATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTTGGA
702 ATTCTAGTAATTATCTTCT-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * *
1017732 TAAATGATATTAAAAATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
766 TAAATGATATTGAAGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
1017797 AAGTTCATCCCTTAATTAAGACAAGTATCGATTCTTGTAACAGTC-CCTATTTTTCTCAAGGTTG
831 AAGTTCAT-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC-ATTTTT-TCAAGATTG
* * * **
1017861 GGAACGTAAAACACA-TCCCTTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCA
893 GGAAC-CAAAAAACATTCCC--TTCATTAGGATACATGACATTGATGCTTTGGTGTTG
* * *
1017918 TAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAA-TTTGTCTCTTAAAAAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
* * **
1017982 ATGAATACTCAAACTAATCCCCTTTTCTTTTC-TAGATTAGGCACCATAAACATAGTCTTCTCTT
66 ATGAATACTCATACTAATCCCC-ATTCTTTTCAT-GATTAGGCACCATAAACATAGTCTTCTCAC
* * *
1018046 TAGGATGCATGATATTAATGTTTTGCTTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAA
129 TAGGATACATGATATTGATGTTTTG-TTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * * * *
1018111 GTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTTTGGCAATGATCTTCATTCATTTTGTGA
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGA
* * * * *
1018176 TTACGAACTATAAACACGTTCTCCTCATTAGGATAAATGATATTGATCACTTTCTTTTGCTTGGA
258 TTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *
1018241 ATTCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
323 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * *
1018306 TCTCGTAACAGTCTCTATTCTTTTTAGGATT-GGA-AGCCTAAAACAAATTCCCTTCATTAGGAT
388 TCTCGTAACAGTCCCTATTCTTTTCAAGATTAGGAGAGCCTAAAACACATTCCCTTCATTAGGAT
* * * * *
1018369 AAATGACATTGATGCTTTGGTATCACAAGAAAAGCTCTTCTTTCCACCATTTTTTTATAGAATCA
453 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCA
* * * * *
1018434 AAGTTTGTCTCTTAAAAAAGATAAACATGAATACTCATACTATTCCCAATTCTTTTCATGTTTAG
517 AAGTTTG-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCA-GATTAG
* * ** *
1018499 GGACCATAAACCTAGTTTTCTCATTAGGATACACAATATTGGTGCTTTGGTTTAGCAAGAAAGGC
580 GCACCATAAACATAGTTTTCTCATTAGGATACATGATATTGATGCTTTGGTTTAGCAAGAAAGGC
*
1018564 TTTTTTCCCACCAATTCTTGTAAAGTCTAAGTTCATG-CTATAAATAAGAGAAACATGGATTCTA
645 TTTTTTCCCACCAATT-TTGTAAAGTCTAAGTTCATGCCTA-AAATGAGAGAAACATGGATTCTA
* * * *
1018628 GTAATTATCTTCTTTCATTTTATGATTAGGCACAATAAACATATTCTCCTCAATAGGATAAATGA
708 GTAATTATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
*
1018693 TATTGAAGATTTTCTTTTGCATGGGAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
773 TATTGAAGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * **
1018758 TATCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTACATTACTTTCAAGATTGAAAACCAA
838 T-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTGGGAACCAA
* *
1018823 AAGAACATTCCC-TCTATTAGGATACATGACATTGATGATTTGGTATTG
901 AA-AACATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTTG
* *
1018871 CAAGAAAAGCTTTTCTTTCCACCATATTTGATAGAACCAAAGTTTGTCTCTT-AAAAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
* * *
1018935 ATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATGAACATAGCCTTCTCACTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCACTA
* * ** * * *
1019000 GTATACATGACATTGGCGCTTTG-GTTGCCTAAGAAAGGCTTTGTTCCCACCAATTTTTGTAAAG
131 GGATACATGATATTGATGTTTTGTTTTG-C-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * *
1019064 TCTAAGTTCGTGCCTCAAATGAGACAAGCAGGGATTCTAGTAATTATCTTCTTTCATTTTATGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGAT
* * * *
1019129 TAGGCAGTATAATCACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
259 TACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* *
1019194 ATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATATGACAAGCATCGATT
324 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * *
1019259 CTCATAACAGCCCCTATTCTTTTCAAGATTGGGATATATGGCATTGATGCTTTGGTGTCGCAAGA
389 CTCGTAACAGTCCCTATTCTTTTC-A-A----GAT-TA-GG-A--GA-GC--------C-TAA-A
* * * *
1019324 A-A-AGTT---TTCTTTAGGATATACGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTT
432 ACACA-TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * *
1019384 CCATCGTTTTTGATAGAATAAAAGTTTGCATCTTAAATAAGACAAACATGAATAGTCATACTAGT
496 CCACCGTTTTTGATAGAATCAAAGTTTGC-TCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * *
1019449 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATG
560 CCCAATTCTTTTC-AGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACATGATATTGATG
* * * **
1019514 CTTTGGCTTCGCAAGAAAGGCTTTCTTCCCAATAATTTTGTAAAGTCTAATAGTTCATGCCTAAA
624 CTTTGGTTTAGCAAGAAAGGCTTTTTTCCCACCAATTTTGTAAAGTCT-A-AGTTCATGCCTAAA
* * *
1019579 ATGAG-GCAAACATGGATTCTAGT-ATTGT-TGTCCATTCATTTTGTGATTAGGCATTATAAACA
687 ATGAGAG-AAACATGGATTCTAGTAATTATCT-T-CTTTCATTTTGTGATTAGGCACTATAAACA
* * * * * * ** *
1019641 CATTCTGCACTTTACGATAAATGATTTTGATGA-TTTCTTTTGCAT-GGAAAGTTTTCTTTACCC
749 CATTCTCCTCATTAGGATAAATGATATTGAAGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCC
* *
1019704 TATTTTCCTTAAAATCAATGTTCATCCTTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
814 TATTTTCCTTAAAATCAAAGTTCATCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
*
1019769 ATTTTTTTCAAGATTGGGAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTT
878 A-TTTTTTCAAGATTGGGAACCAAAAA-ACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1019834 GGTGTTG
941 GGTGTTG
* * * * * **
1019841 CAAGAAAAGTTTTTTTTTTCCATCGTTTTTCATAGAATCAAAGTTT-TCCTCTTAAATCAGACAA
1 CAAGAAAAG-CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTCTTAAAAAAGACAA
* * ** * * *
1019905 ACATGAATAGTCATACATAATCCCTATTCTTTTCGGGATAAGGCACCATAAAGATAGTCTTCCCA
64 ACATGAATACTCATAC-TAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * *
1019970 TTAGGATACATGATATTTATGTTTTGGTTT-CATAAGAAATGCTTTTTTCCCACCAATCTTTATA
128 CTAGGATACATGATATTGATGTTTTGTTTTGC--AAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * * * **
1020034 AAGTCAAACTTCGTGCCTCAAATGAGACAAGCATGGATTCTAGTACTGATCTTCATTCATTTCGT
191 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTAT
* * *
1020099 GATTACGCACTACAAACACATTCTCCTCATTAAGATAAATGATATTGAAGATTTTCTTTTGCATG
256 GATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * *
1020164 GAAATCTTTTCTTTGCCTTAATTTCCCTAAAATTAAAGTTCATCCCTTAAATAAGACAAGCATCG
321 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * *
1020229 ATTCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGA-A-CC-AAAACCACATTCCTTTAATTAG
386 ATTCTCGTAACAGTCCCTATTCTTTTCAAGATTAGGAGAGCCTAAAA-CACATTCCCTTCATTAG
* ** **** ****
1020291 GATACATG--A-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTCCCCATTCTTT
450 GATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAA
* * * * * * ** * * * **** *
1020353 TC-ACGATTAGGCACCATAAACATAGTC-TTC-TCACTAGT-ATACATGATATTGATGC-TTT-A
514 TCAAAG-TT-TGC-TCTTAAATA-AGACAAACATGAATAGTCATAC-TAATCCCAATTCTTTTCA
** * ** * *
1020412 G-TT-GTGCA--ATAAA-AGGCTTTTTTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCG-TGCC
574 GATTAG-GCACCATAAACA---TAGTTTT--C-TC-A-TTAGGATACATG-AT-A-TT-GATG-C
* * * * * * ** * **** * * *
1020469 TCAAATGAGATAAACATGGATTCCAGTAATGATTTT-CTTTTATTTTATGATTAGCCAGTATGAA
625 T---TTG-GTTTAGCA-AGA---AAG-GCT-TTTTTCCCACCAATTT-TG--TA--AAGTCT--A
* ** * * * * *
1020533 CACATTC-T-CCTCATTAGGATA-AATGATATTGATGATTTTCTTATGCCTAGAAATATTTTCTT
673 -A-GTTCATGCCT-AAAATGAGAGAA--ACA-TG--GA--TTC-TA-G--T--AATTATCTTCTT
* * * ** * * * * *
1020595 TGCCCTATTTT-T-CTTA---A-AATCAA-AGTTTATCACTTAAATAAGATAAGCATCGATTTTC
722 T---C-ATTTTGTGATTAGGCACTATAAACACATTCTC-C-TCATTAGGATAA--AT-GATATT-
* ** **** * ** * * * **
1020653 GTAATAGTTTCCTTTCTTTT-CAAGATTGGGAGCCAAAAAC---ACATTCTCTTCATTAGGATAC
777 G--A-AG-AT--TTTCTTTTGC---A-TGGGAATC-TTTTCTTTGCCCTATTTTCCTTAAAAT-C
* * * ** * * * * * *
1020714 AAGACATTGATGCTTTGGTGTTACAAGAAAAGCTTTTTCTTTCCACCATTTTTGATAGA-A-TCT
830 AA-A-GTTCAT-C-CT--T-AAATAAGACAAG------C-AT---CGATTCTCG-TA-ACAGTCT
* * ** * * *
1020777 -AAGTTTGCCTCTTC-A-ATCAGACAAACATGAATAGTCATACATAATCCCTATTCTTTTCGGGA
876 CCA-TTT---T-TTCAAGAT-TGGGAACCA--AA-A---A-ACAT--TCCC--TTC-ATT-AGGA
* ** * * ** *
1020839 TAGGCA--CCATAAACG-TAGTCCTCTCAT-
922 TA--CATGACATTGATGCT-TTGGTGT--TG
* * * ** * * *
1020866 TAAGATACATGATATTGATATTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTATAAA
1 CAAGA-A-AAGCT-TTTCT--------TTC-C-----A-CCATTTTT------GA----TA-GAA
* * * * * * * * * * * ** *
1020931 GTCTAAGTCTGTGC-CTCAAATAAGATAAATATGGATTCTAATAATGATCTTCATTCATTTT-GT
37 -TCAAAGTTTGT-CTCTTAAAAAAGACAAACATGAATACTCATACTAATCCCCATTC-TTTTCAT
* * * * * * * * * *
1020994 GATTATGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAATATTTTCTTTTGCATG
99 GATTAGGCACCATAAACATAGTCTTCTCACTAGGATACATGATATTG-ATGTTTTGTTTTGCA-A
* ** * * * * * * * * * *
1021059 GAAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAG-TCTATCCCTTAATTAAGATAAGC
162 GAAAGGCTTTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAAC
* * * * * * * * * *
1021120 ATCGATTATCA-TAATAGTTC-CCACTC-TTTTCAAGATTGA-G-AATGTAAAACAGATTCCTTT
223 ATGGATTCT-AGTAAT-GATCTTCATTCATTTT-ATGATT-ACGCACTAT-AAACACATT-C-TC
* * * * * ** * * * * * *
1021180 TTCATTAAGATAAAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT
281 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTT
* * ** * * * * * *
1021244 -TTGTAGAATCAAAGTTTGTCTCTTAAA-ATAGACAAACAT-GAATACTCAT-ACTATTCCCCAT
345 CCT-TAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCG-ATTCTCGTAAC-AGTCCCTAT
**** * * * * *
1021305 TCTTTTCGTTTTTAGG-GA-CC-ATAAACATAGT-CTTCTCATTAGGATACATGATATTGGTGCT
406 TCTTTTCAAGATTAGGAGAGCCTA-AAACACATTCCCT-TCATTAGGATACATGACATTGATGCT
* * * * * * * *
1021366 CTGGT-TTAGCAAGAAAGGCTTTT-TTCCCACCAATTCTTG-TA-AAGTCTAAGTTTATGC-CTC
469 TTGGTGTCA-CAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCAAAG-TT-TGCTCTT
* * * * * * * * * *
1021426 AAATGAGAGAAACATGGAT--TCTAGTAATGATCTTC-TTTCAATTT-ATGACTAGGCACAATAA
529 AAATAAGACAAACATGAATAGTC-A-TACTAATC-CCAATTC-TTTTCA-GATTAGGCACCATAA
* * * * * * * ***
1021487 ACACA-TTCTCCTCATTAGGATAAATGATATTGAAGACTTT-CTTTTGCATGAAAATTTTTTCTT
589 ACATAGTT-TTCTCATTAGGATACATGATATTGATG-CTTTGGTTTAGCAAG-AAAGGCTTT-TT
* * * * * * * * * * * * *
1021550 TGCC-CTATTTTTCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA-T
650 TCCCACCAATTTTGT-AAAGTCTAAGTTCATGCCTAAAATGAGAGAAACATGGATTCTAGTAATT
** * ** * * * * * * * *
1021613 AGTCCCCATTC-TTTTCAAGATTGGGAACCAAAAACACATTC-CCTACATTGGGATACACGACAT
714 A-TCTTCTTTCATTTT-GTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATAT
* * ** * ** * * * * * ** *** * **
1021676 TGATGCTTTGGTGTCACA-AGAAAGGCTCTTCTTT-CCACCAGTTTT-GATAGTGTAAAAGTTTT
776 TGAAGATTTTCTTTTGCATGGGAA-TCTTTTCTTTGCC-CTA-TTTTCCTTAAAATCAAAGTTCA
* * *
1021738 TCTCTTAAATAAGACAAACAT-GAATAGTCATACTAATCCACACTCTTTTCAATCTCCATTCTTT
838 TC-CTTAAATAAGACAAGCATCG-AT--TC-T-C--GT--A-A-------CAGTCTCCATT-TTT
* ** * * *
1021802 TCAGGATTGGGAACCTAAAATGCATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTATCG
884 TCAAGATTGGGAACC-AAAAAACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTG
* * * * *
1021867 CTAGAAGAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGATAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
* * * * *
1021932 ATAAATACTCATACTATTCCCTATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCACTA
* * * * *
1021997 GGATACACGATATTGGTGCTTTGGTTTCT-TAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAG
131 GGATACATGATATTGATG-TTTTGTTT-TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * * *
1022061 TCTAAGTTCATGACTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGAT
* * * * ** * *
1022126 TAGGCACTATAAGCACAGTCTCATCATTTCGATAAATGATATTGATGATTTTTTTTTTGCATGAA
259 TACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGA
* * *
1022191 AATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAAT
323 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * * *
1022256 TCTCATAGCAGTCCC-ATTCTTTTCAAGATT-GG-GAACCAAAAACACATTCTCTTCATTAGGAT
388 TCTCGTAACAGTCCCTATTCTTTTCAAGATTAGGAGAGCCTAAAACACATTCCCTTCATTAGGAT
* ** * * * *
1022318 ATACAACATTCATGCTTT-G-GTCGCAAGAAAAGCTTTTCTTTTCACCCTTTTTGATAGAATCAA
453 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * *
1022381 AGTTTGCCTCTTAAATAAGACAAACATAAACAGTCATACTAATTCCC-ATTGTTTTCGGGATTAG
518 AGTTTG-CTCTTAAATAAGACAAACATGAATAGTCATACTAA-TCCCAATTCTTTTC-AGATTAG
* * * * * *
1022445 GCACTATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTTGCTAGAAAGGC
580 GCACCATAAACATAGTTTTCTCATTAGGATACATGATATTGATGCTTTGGTTTAGCAAGAAAGGC
* ** * * * * **
1022510 TTTCTTCTGACCAATTTTTGTAAAGTTTATGTCCATGCCTCAAATGAGCCAAACATGGATTCTAG
645 TTTTTTCCCACCAA-TTTTGTAAAGTCTAAGTTCATGCCTAAAATGAGAGAAACATGGATTCTAG
* * * * *
1022575 T-ATTGATCTTCATTCATTTTTTGATTAGGCACTGTGAACACATTCTCCCCATTAGGATAAATGA
709 TAATT-ATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* * * *
1022639 TATTGATGATTTTC-TTTGACAT-GAAATCTTCTCTTTGCCCTATTTTCCTTAAAATTAAAGTTC
773 TATTGAAGATTTTCTTTTG-CATGGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
*
1022702 ATCCCTTAAA-AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCA
837 AT-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTGGGAACCA
* * *
1022766 AAAACACATTCCTTTCATTAAGATACTTGACATTGATGCTTTGGTGTTG
900 AAAA-ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTG
* * *
1022815 CTAG-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAAC
1 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
* ** ** * * * *
1022879 ATGAATACACATACTCTTCCCCATTCTTTTCACCATTACGCACCATAAACTTAGTCTTCTTATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCACTA
* * * * *
1022944 GGATACACGATATTGGTGCTTTGGTTTCT-TAAGAAGGGCTTTTTTCCCACCAATTTTTGTAAAG
131 GGATACATGATATTGATG-TTTTGTTT-TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * * *
1023008 TCTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCATTCATTTTGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGAT
* * * * * * * * * *
1023073 TAGGAACTATGAGCACATTTTCGTCATTTGGATAAATGATGTCGATGATTTT-TTTTGCGTGGAA
259 TACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* ** *
1023137 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTCAATAAGACAATAATCAATT
324 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * *
1023202 CCCGTAACAGTCCCCATT-TCTTTCAAGATT-GG-GAACCAAAAACACATTCCCTTCATTAGGAC
389 CTCGTAACAGTCCCTATTCT-TTTCAAGATTAGGAGAGCCTAAAACACATTCCCTTCATTAGGAT
* * * *
1023264 ACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAA
453 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * ** ** * *
1023329 AGTTTGTCTCTTAAATAACACAAACAAGAATACACATACTCTTCCCCATTGTTTTCATGATTAGG
518 AGTTTG-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCA-GATTAGG
* * * ** *** * *
1023394 CTCCATAAACTTA-TTCTTCTCATTAGGATACACGATATTGGCGCTTT-GTTTCTTAACAAAGGT
581 CACCATAAACATAGTT-TTCTCATTAGGATACATGATATTGATGCTTTGGTTTAGCAAGAAAGGC
* * * * ** *
1023457 TTTTTTCTCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACAAGACAAACATGGATTCTAG
645 TTTTTTCCCACCAA-TTTTGTAAAGTCTAAGTTCATGCCTAAAATGAGAGAAACATGGATTCTAG
* * * * *
1023522 TAATTATTTTCGTTCATTTTGTGATTAGGCACTATAAGCACAGTCTCCTCTTTAGGATAAATGAT
709 TAATTATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * *
1023587 ATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTACCCCATTTTCCTTAAAATCAAAGTTCAT
774 ATTGAAGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
1023651 CTCTTAAATAAGACAAGAATCAATTCTCATAACAATCCCCATTCTTTTCAATATTGGGAACCAAA
839 C-CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTGGGAACCAAA
* * * **
1023716 AACACATTCCCATCATTAGGATACACGACATTCATGCTTTGGTGTCA
902 AA-ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTG
* * * * * *
1023763 TAAGAAACA-CTTTTCTTTTCAACGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAA
1 CAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAA
* * * ** *
1023827 CATAAATAGTCATACTAATCTCCATTCTTTTCGGGATTAGGCACCATAAATATAGTCTTCTCA-T
65 CATGAATACTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCACT
* * ** * * *
1023891 AAGGATGCATGATATTGATGCTTTAGTTTTGTTAGAAAGGCTTTCTTCCAACCAATTTTTGTGAA
130 -AGGATACATGATATTGATG-TTTTGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * * *
1023956 GTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATTATCTTCATTCATTTTGTGA
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGA
* * * *
1024021 TTACGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCGTGAA
258 TTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *
1024086 AATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGAT
323 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * ** * *
1024151 TCTCATAATAGTTTCTATTATTTTCAGGATT
388 TCTCGTAACAGTCCCTATTCTTTTCAAGATT
1024182 GGGAACTGAT
Statistics
Matches: 4848, Mismatches: 1026, Indels: 785
0.73 0.15 0.12
Matches are distributed among these distances:
944 1 0.00
945 89 0.02
946 66 0.01
947 473 0.10
948 295 0.06
949 258 0.05
950 147 0.03
951 24 0.00
952 294 0.06
953 264 0.05
954 497 0.10
955 158 0.03
956 1 0.00
957 2 0.00
958 8 0.00
959 4 0.00
960 1 0.00
961 4 0.00
962 5 0.00
963 7 0.00
964 22 0.00
965 35 0.01
966 131 0.03
967 103 0.02
968 77 0.02
969 88 0.02
970 226 0.05
971 303 0.06
972 162 0.03
973 291 0.06
974 4 0.00
975 8 0.00
976 4 0.00
977 2 0.00
978 4 0.00
979 6 0.00
980 8 0.00
981 3 0.00
982 6 0.00
983 17 0.00
984 4 0.00
985 5 0.00
986 1 0.00
987 1 0.00
989 1 0.00
990 4 0.00
991 8 0.00
993 13 0.00
994 4 0.00
995 3 0.00
996 5 0.00
997 2 0.00
998 3 0.00
999 3 0.00
1000 12 0.00
1001 3 0.00
1002 14 0.00
1003 5 0.00
1004 4 0.00
1005 1 0.00
1006 5 0.00
1007 3 0.00
1008 3 0.00
1009 4 0.00
1010 15 0.00
1011 6 0.00
1012 9 0.00
1013 11 0.00
1014 13 0.00
1015 7 0.00
1016 9 0.00
1017 6 0.00
1018 11 0.00
1019 1 0.00
1020 5 0.00
1021 1 0.00
1022 8 0.00
1023 3 0.00
1024 20 0.00
1025 28 0.01
1026 22 0.00
1027 29 0.01
1028 41 0.01
1029 29 0.01
1030 15 0.00
1031 16 0.00
1032 205 0.04
1033 187 0.04
1034 10 0.00
1035 22 0.00
1036 5 0.00
1037 5 0.00
1038 10 0.00
1039 11 0.00
1040 9 0.00
1041 1 0.00
1042 8 0.00
1043 1 0.00
1044 1 0.00
1045 2 0.00
1046 10 0.00
1047 2 0.00
1048 1 0.00
1049 1 0.00
1050 4 0.00
1052 3 0.00
1053 67 0.01
1054 99 0.02
1055 27 0.01
1056 132 0.03
1057 19 0.00
1058 21 0.00
1059 32 0.01
1060 3 0.00
1061 5 0.00
1062 1 0.00
1063 5 0.00
1064 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (947 bp):
CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
ATGAATACTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCACTA
GGATACATGATATTGATGTTTTGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTA
CGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
CGTAACAGTCCCTATTCTTTTCAAGATTAGGAGAGCCTAAAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
TTGCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGATTAGGCACCA
TAAACATAGTTTTCTCATTAGGATACATGATATTGATGCTTTGGTTTAGCAAGAAAGGCTTTTTT
CCCACCAATTTTGTAAAGTCTAAGTTCATGCCTAAAATGAGAGAAACATGGATTCTAGTAATTAT
CTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAAG
ATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAA
TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTTTTTCAAGATTGGGAACCAAAAAACATTCC
CTTCATTAGGATACATGACATTGATGCTTTGGTGTTG
Found at i:1019351 original size:47 final size:48
Alignment explanation
Indices: 1019290--1019383 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 48
1019280 TTCAAGATTG
* * * *
1019290 GGATATATGGCATTGATGCTTTGGTGTCGCAAGAAAAG-TTTTCTTTA
1 GGATATACGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTA
1019337 GGATATACGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTT
1 GGATATACGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTT
1019384 CCATCGTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 34 0.81
48 8 0.19
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (48 bp):
GGATATACGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTA
Found at i:1021648 original size:159 final size:159
Alignment explanation
Indices: 1020531--1024187 Score: 953
Period size: 158 Copynumber: 23.0 Consensus size: 159
1020521 AGCCAGTATG
* * * *
1020531 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTATGCCTAGAAATA--TTTTCT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTG-CAAGAAA-AGCTTTTCT
* * * * * *
1020594 TTGCCCTATTTTTCTTAAAATCAAAGTTTATCACTTAAATAAGATAAGCATCGATTTTCGTAATA
64 TTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAATA
** * *
1020659 GTTTCCTTTCTTTTCAAGATTGGGAGCCAAA
129 GTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * *
1020690 AACACATTCTCTTCATTAGGATACAA-GACATTGATG-CTTTGGTGTTACAAGAAAAGCTTTTTC
1 AACACATTCTCCTCATTAGGATA-AATGATATTGATGACTTT-GTTTTGCAAGAAAAGC-TTTTC
* ** * * * * **
1020753 TTT-CCACCATTTTTGATAGAATCTAAGTT--TGCCTCTTCAATCAGACAAACAT-GAATAGTCA
63 TTTGCC-CTATTTTTCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAACATCG-ATTCTCA
* * ** * * *
1020814 TACATAATCCCTATTCTTTTCGGGA-TAGGCACCATA
124 TA-ATAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * * * * *
1020850 AACGTAGTC-CTCTCATTAAGATACATGATATTGAT-ATTTTGGTTTCGCAAGAAAGGCATTT-T
1 AACACATTCTC-CTCATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTCT
** * * * * * * * * * * *
1020912 TCCCACCAATTTTT-ATAAAGTCTAAG-TCTGTGCCTCAAATAAGATAAATATGGATTCTAATAA
64 TTGC-CCTATTTTTCTTAAAATCAAAGTTC-ATCCCTTAAATAAGACAAACATCGATTCTCATAA
** ** ** * * *
1020975 T-GATCTTCATTCATTTT-GTGATTATGCACTATA
127 TAG-TCCCCATTC-TTTTCAAGATTGGGAACCAAA
* * * * *
1021008 AACACATTCTCCTCATTAGGATAAATGATATTGAAT-ATTTTCTTTTGCATGGAAATCTTTTCTT
1 AACACATTCTCCTCATTAGGATAAATGATATTG-ATGACTTTGTTTTGCAAGAAAAGCTTTTCTT
* * * * *
1021072 TGCCCTATTTTCCTTAAAATCAAAG-TCTATCCCTTAATTAAGATAAGCATCGATTATCATAATA
65 TGCCCTATTTTTCTTAAAATCAAAGTTC-ATCCCTTAAATAAGACAAACATCGATTCTCATAATA
* * * ***
1021136 GTTCCCACTCTTTTCAAGATTGAGAATGTAA
129 GTCCCCATTCTTTTCAAGATTGGGAACCAAA
* ** * * * * *
1021167 AACAGATTCCTTTTTCATTAAGATAAAAGACATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTC
1 AACACATT-C-TCCTCATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTC
* * ** * *
1021231 TTT-CCACCATTTTT-TGTAGAATCAAAGTTTGTCTCTTAAA-ATAGACAAACAT-GAATACTCA
63 TTTGCC-CTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATA-AGACAAACATCG-ATTCTCA
* * **** *
1021292 TACTATTCCCCATTCTTTTCGTTTTTAGGG-ACCATA
124 TAATAGTCCCCATTCTTTTCAAGATT-GGGAACCAAA
* * * * * * * *
1021328 AACATAGTCTTCTCATTAGGATACATGATATTGGTG-CTCTGGTTTAGCAAGAAAGGCTTTT-TT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACT-TTGTTTTGCAAGAAAAGCTTTTCTT
** * * * * * * * * * * *
1021391 CCCACCAATTCTT-GTAAAGTCTAAGTTTATGCCTCAAATGAGAGAAACATGGATTCT-AGTAAT
65 TGC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCA-TAAT
** * * * * * *
1021454 -GATCTTCTTTCAATTT-ATGACTAGGCA-CAATA
128 AG-TCCCCATTC-TTTTCAAGATTGGGAACCAA-A
* * * **
1021486 AACACATTCTCCTCATTAGGATAAATGATATTGAAGACTTTCTTTTGCATGAAAATTTTTTCTTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTGCAAGAAAAGCTTTTCTTT
* * *
1021551 GCCCTATTTTTCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGT
66 GCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAATAGT
1021616 CCCCATTCTTTTCAAGATTGGGAACCAAA
131 CCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * ** * *
1021645 AACACATTC-CCTACATTGGGATACACGACATTGATG-CTTTGGTGTCACAAGAAAGGCTCTTCT
1 AACACATTCTCCT-CATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTCT
* * ** *** * ** *
1021708 TT-CCACCAGTTTTGATAGTGTAAAAGTTTTTCTCTTAAATAAGACAAACAT-GAATAGTCATAC
64 TTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT--TC-T-C
* * * *
1021771 TAATCCACACTCTTTTCAATCTCCATTCTTTTCAGGATTGGGAACCTAA
123 --AT--A-A------T-AGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** ** * * * * *
1021820 AATGCATTC-CCTTCATTAGGATACTTGACATTGATG-CTTTGGTATCGCTAGAAGAGCTTTTCT
1 AACACATTCTCC-TCATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTCT
* ** * * * * ** * *
1021883 TT-CCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGATAAACATAAATACTCATACT
64 TTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAAT
* * * * * *
1021947 ATTCCCTATTCTTTTCATGATTAGGCACCATA
128 AGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * * * * *
1021979 AACTTAGTCTTCTCATTAGGATACACGATATTGGTG-CTTTGGTTTCT-TAAGAAAGGCTTTT-T
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTT-GTTT-TGCAAGAAAAGCTTTTCT
* * * * ** * * *
1022041 TCT-CACCAATTTTT-GTAAAGTCTAAGTTCATGACTCAAATAAGACAAATATGGATTCT-AGTA
64 T-TGC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCA-TA
** ** * * * *
1022103 AT-GATCTTCATTCATTTT-GTGATTAGGCACTATA
126 ATAG-TCCCCATTC-TTTTCAAGATTGGGAACCAAA
* * * ** * * * **
1022137 AGCACAGTCTCATCATTTCGATAAATGATATTGATGATTTTTTTTTTGCATGAAAATATTTTCTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGA-CTTTGTTTTGCAAGAAAAGCTTTTCTT
* * **
1022202 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGA-ATCAATTCTCATAGCA
65 TGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-ACATCGATTCTCATAATA
1022266 GT-CCCATTCTTTTCAAGATTGGGAACCAAA
129 GTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * ** * * * *
1022296 AACACATTCTCTTCATTAGGATATACAACATTCATG-CTTTG-GTCGCAAGAAAAGCTTTTCTTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTGCAAGAAAAGCTTTTCTTT
* * ** * ** *** *
1022359 TCACC-CTTTTTGATAGAATCAAAGTT--TGCCTCTTAAATAAGACAAACATAAACAGTCATACT
66 GC-CCTATTTTTCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAACATCGATTCTCATAAT
* * * ** * * * *
1022421 AATTCCCATTGTTTTCGGGATTAGGCACTATA
128 AGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * ** * *
1022453 AACATAGTCTTCTCATAAGGATGCATGATATTGATG-CTTTGGTTTTGCTAGAAAGGC-TTTCTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTCTT
* * * * ** * * * * * * *
1022516 CTGACCAATTTTT-GTAAAGTTTATGTCCATGCCTCAAATGAGCCAAACATGGATTCT-AGT-AT
65 -TGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCA-TAAT
* ** ** * * ****
1022578 TGATCTTCATTCATTTT-TTGATTAGGCACTGTG
128 AG-TCCCCATTC-TTTTCAAGATTGGGAACCAAA
* * * *
1022611 AACACATTCTCCCCATTAGGATAAATGATATTGATGA-TTT-TCTTTGACATG-AAATCTTCTCT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGT-TTTG-CAAGAAAAGCTTTTCT
* * * * *
1022673 TTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTCGTAACA
64 TTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAATA
* *
1022737 GTCTCCATTCTTTTCAAGATTAGGAACCAAA
129 GTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * ** * * *
1022768 AACACATTC-CTTTCATTAAGATACTTGACATTGATG-CTTTGGTGTTGCTAG-AAAGCTTTTCT
1 AACACATTCTC-CTCATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTCT
* ** * * * * * *
1022830 TT-CCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACAT-GAATACACATAC
64 TTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCATAA
** ** ** * *
1022893 TCTTCCCCATTCTTTTCACCATTACGCACCATA
127 TAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * * * * * **
1022926 AACTTAGTCTTCTTATTAGGATACACGATATTGGTG-CTTTGGTTTCT-TAAGAAGGGCTTTT-T
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTT-GTTT-TGCAAGAAAAGCTTTTCT
** * * * * * * * * *
1022988 TCCCACCAATTTTT-GTAAAGTCTAAGTTTGA-GCCTCAAATAAGACAAACATGGATTCTAATAA
64 TTGC-CCTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCGATTCTCATAA
** ** * * **
1023051 T-GATCTTCATTCATTTT-GTGATTAGGAACTATG
127 TAG-TCCCCATTC-TTTTCAAGATTGGGAACCAAA
* * * * * * * ** * *
1023084 AGCACATTTTCGTCATTTGGATAAATGATGTCGATGA-TTTTTTTTGCGTGGAAATCTTTTCTTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTGCAAGAAAAGCTTTTCTTT
* * * * * *
1023148 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTCAATAAGACAATA-ATCAATTCCCGTAACAG
66 GCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-ACATCGATTCTCATAATAG
1023212 TCCCCATT-TCTTTCAAGATTGGGAACCAAA
130 TCCCCATTCT-TTTCAAGATTGGGAACCAAA
* * * *
1023242 AACACATTC-CCTTCATTAGGACACAA-GACATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTC
1 AACACATTCTCC-TCATTAGGATA-AATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTC
* * ** * * * * *
1023304 TTT-CCACCATTTTT-TATAGAATCAAAGTTTGTCTCTTAAATAACACAAACA-AGAATACACAT
63 TTTGCC-CTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCAT
* ** * * * ** *
1023366 ACTCTTCCCCATTGTTTTCATGATTAGGCTCCATA
125 AATAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * ** * * *
1023401 AACTTATTCTTCTCATTAGGATACACGATATTGGCG-CTTTGTTTCT-TAA-CAAAGGTTTT-TT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTT-TGCAAGAAAAGCTTTTCTT
* * * * * * * *
1023462 T-CTCACTAATTTTT-GTAAAGTCTAAGTTCGTGCCTCAAACAAGACAAACATGGATTCT-AGTA
65 TGC-C-CT-ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCA-TA
*** * ** * * * *
1023524 ATTA-TTTTCGTTCATTTT-GTGATTAGGCACTATA
126 A-TAGTCCCCATTC-TTTTCAAGATTGGGAACCAAA
* * * * * * *
1023558 AGCACAGTCTCCTCTTTAGGATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTGCAAGAAAAGCTTTTCTTT
* * * * * * *
1023622 ACCCCATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGA-ATCAATTCTCATAACAA
66 GCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-ACATCGATTCTCATAATAG
*
1023686 TCCCCATTCTTTTCAATATTGGGAACCAAA
130 TCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * *
1023716 AACACATTC-CCATCATTAGGATACACGACATTCATG-CTTTGGTGT-CATAAGAAACA-CTTTT
1 AACACATTCTCC-TCATTAGGATAAATGATATTGATGACTTTGTTTTGC--AAGAAA-AGCTTTT
* * * ** * ** **
1023777 CTTTTCAAC-GTTTTTGATAGAATCAAAGTT--TGCCTCTTAAATAAGACAAACATAAATAGTCA
62 CTTTGC-CCTATTTTTCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAACATCGATTCTCA
* * * ** * * *
1023839 TACTAATCTCCATTCTTTTCGGGATTAGGCACCATA
124 TAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * ** ** *
1023875 AATATAGTCTTCTCATAAGGATGCATGATATTGATG-CTTTAGTTTTGTTAGAAAGGC-TTTC-T
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTT-GTTTTGCAAGAAAAGCTTTTCTT
* * * * * * * * * * * * **
1023937 TCCAACCAATTTTT-GTGAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCT-AGTAA
65 TGC--CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCA-TAA
** ** ** * * *
1024000 TTA-TCTTCATTCATTTT-GTGATTACGCACTATA
127 -TAGTCCCCATTC-TTTTCAAGATTGGGAACCAAA
* * * * ** * *
1024033 AACACATTATCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCGTGAAAATCTTTTCTAT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTGCAAGAAAAGCTTTTCTTT
* * *
1024098 GCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGT
66 GCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAATAGT
** * * *
1024163 TTCTATTATTTTCAGGATTGGGAAC
131 CCCCATTCTTTTCAAGATTGGGAAC
1024188 TGATGAGAAC
Statistics
Matches: 2485, Mismatches: 817, Indels: 392
0.67 0.22 0.11
Matches are distributed among these distances:
154 1 0.00
155 3 0.00
156 75 0.03
157 329 0.13
158 855 0.34
159 786 0.32
160 177 0.07
161 119 0.05
162 4 0.00
163 1 0.00
165 1 0.00
167 2 0.00
168 1 0.00
169 2 0.00
171 1 0.00
172 1 0.00
173 1 0.00
174 1 0.00
175 124 0.05
176 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (159 bp):
AACACATTCTCCTCATTAGGATAAATGATATTGATGACTTTGTTTTGCAAGAAAAGCTTTTCTTT
GCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAATAGT
CCCCATTCTTTTCAAGATTGGGAACCAAA
Found at i:1021963 original size:175 final size:175
Alignment explanation
Indices: 1021618--1021947 Score: 455
Period size: 175 Copynumber: 1.9 Consensus size: 175
1021608 GTAATAGTCC
*
1021618 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTACATTGGGATACACGACATTGATGCT
1 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTACATTAGGATACACGACATTGATGCT
* ** **
1021683 TTGGTGTCACAAGAAAGGCTCTTCTTTCCACCAGTTTTGATAGTGTAAAAGTTTTTCTCTTAAAT
66 TTGGTATCACAAGAAAGGCTCTTCTTTCCACCAGTTTTGATAGAATAAAAGTTCGTCTCTTAAAT
* *
1021748 AAGACAAACATGAATAGTCATACTAATCCACACTCTTTTCAATCT
131 AAGACAAACATAAATACTCATACTAATCCACACTCTTTTCAATCT
* * ** * **
1021793 CCATTCTTTTCAGGATTGGGAACCTAAAATGCATTCCCTTCATTAGGATACTTGACATTGATGCT
1 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTACATTAGGATACACGACATTGATGCT
* * * * *
1021858 TTGGTATCGCTAG-AAGAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAA
66 TTGGTATCACAAGAAAG-GCTCTTCTTTCCACCAGTTTTGATAGAATAAAAGTTCGTCTCTTAAA
*
1021922 TAAGATAAACATAAATACTCATACTA
130 TAAGACAAACATAAATACTCATACTA
1021948 TTCCCTATTC
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
174 3 0.02
175 130 0.98
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.34
Consensus pattern (175 bp):
CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTACATTAGGATACACGACATTGATGCT
TTGGTATCACAAGAAAGGCTCTTCTTTCCACCAGTTTTGATAGAATAAAAGTTCGTCTCTTAAAT
AAGACAAACATAAATACTCATACTAATCCACACTCTTTTCAATCT
Found at i:1023499 original size:474 final size:474
Alignment explanation
Indices: 1021793--1024187 Score: 3073
Period size: 474 Copynumber: 5.0 Consensus size: 474
1021783 TTTTCAATCT
* * ** **
1021793 CCATTCTTTTCAGGATTGGGAACCTAAAATGCATTCCCTTCATTAGGATACTTGACATTGATGCT
1 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT
* * * *
1021858 TTGGTATCGCTAGAAGAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAAT
66 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
1021923 AAGATAAACATAAATACTCATACTATTCCCTATTCTTTTCATGATTAGGCACCATAAACTTAGTC
131 AAGACAAACA-AAATACACATACTATTCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
1021988 TTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACCAATTT
195 TTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACCAATTT
* * *
1022053 TTGTAAAGTCTAAGTTCATGACTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCATTCAT
260 TTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * *
1022118 TTTGTGATTAGGCACTATAAGCACAGTCTCATCATTTCGATAAATGATATTGATGATTTTTTTTT
325 TTTGTGATTAGGCACTATAAGCACATTCTCCTCATTTGGATAAATGATATTGATGA--TTTTTTT
* *
1022183 TGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
388 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
*
1022248 GAATCAATTCTCATAGCAGT-C
453 GAATCAATTCTCATAACAGTCC
* * *
1022269 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATATACA-ACATTCATGC
1 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA-AGACATTGATGC
* * *
1022333 TTT-G-GTCGCAAGAAAAGCTTTTCTTTTCACCCTTTTTGATAGAATCAAAGTTTGCCTCTTAAA
65 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
1022396 TAAGACAAACATAA-ACAGTCATACTAATT-CCCATTGTTTTCGGGATTAGGCACTATAAACATA
130 TAAGACAAACAAAATACA--CATACT-ATTCCCCATTCTTTTCAGGATTAGGCACCATAAACTTA
* * * * * *
1022459 GTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTT-TGCT-AGAAAGGCTTTCTTCTGACC
192 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT--TAAGAAAGGCTTTTTTCTCACC
* * * * * * *
1022522 AATTTTTGTAAAGTTTATGTCCATGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCA
255 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCA
* * * *
1022587 TTCATTTTTTGATTAGGCACTGTGAA-CACATTCTCCCCATTAGGATAAATGATATTGATGATTT
320 TTCATTTTGTGATTAGGCACTAT-AAGCACATTCTCCTCATTTGGATAAATGATATTGATGATTT
* * *
1022651 TCTTTGACAT-GAAATCTTCTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAA-AA
384 TTTTTG-CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
1022714 GACAAGCATCGATTCTCGTAACAGTCT
448 GACAAGAATCAATTCTCATAACAGTCC
* * * **
1022741 CCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAAGATACTTGACATTGATGCT
1 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT
* * *
1022806 TTGGTGTTGCTAG-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAAT
66 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * ** *
1022870 AAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCACCATTACGCACCATAAACTTAGTC
131 AAGACAAACA-AAATACACATACTATTCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * *
1022935 TTCTTATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAGGGCTTTTTTCCCACCAATTT
195 TTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACCAATTT
* * *
1023000 TTGTAAAGTCTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCATTCAT
260 TTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * * * *
1023065 TTTGTGATTAGGAACTATGAGCACATTTTCGTCATTTGGATAAATGATGTCGATGATTTTTTTTG
325 TTTGTGATTAGGCACTATAAGCACATTCTCCTCATTTGGATAAATGATATTGATGATTTTTTTTG
* * *
1023130 CGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTCAATAAGACAATA
390 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGA
* *
1023195 ATCAATTCCCGTAACAGTCC
455 ATCAATTCTCATAACAGTCC
*
1023215 CCATT-TCTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGACACAAGACATTGATGC
1 CCATTCT-TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGC
*
1023279 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAA
65 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
1023344 TAACACAAACAAGAATACACATACTCTTCCCCATTGTTTTCATGATTAGGCTCCATAAACTTATT
130 TAAGACAAACAA-AATACACATACTATTCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* * * *
1023409 CTTCTCATTAGGATACACGATATTGGCGCTTT-GTTTCTTAACAAAGGTTTTTTTCTCACTAATT
194 CTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACCAATT
* * * *
1023473 TTTGTAAAGTCTAAGTTCGTGCCTCAAACAAGACAAACATGGATTCTAGTAATTATTTTCGTTCA
259 TTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCA
*
1023538 TTTTGTGATTAGGCACTATAAGCACAGTCTCCTC-TTTAGGATAAATGATATTGATGATTTTTTT
324 TTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTT-GGATAAATGATATTGATGATTTTTTT
* * *
1023602 TGCATGGAAATCTTTTCTTTACCCCATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAA
388 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
*
1023667 GAATCAATTCTCATAACAATCC
453 GAATCAATTCTCATAACAGTCC
* * * *
1023689 CCATTCTTTTCAATATTGGGAACCAAAAACACATTCCCATCATTAGGATACACGACATTCATGCT
1 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT
** * * * *
1023754 TTGGTGTCATAAGAAACA-CTTTTCTTTTCAACGTTTTTGATAGAATCAAAGTTTGCCTCTTAAA
66 TTGGTGTCGCAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
** * * *
1023818 TAAGACAAACATAAATAGTCATACTAATCTCCATTCTTTTCGGGATTAGGCACCATAAA-TATAG
130 TAAGACAAACA-AAATACACATACTATTCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAG
* * * * * * *
1023882 TCTTCTCATAAGGATGCATGATATTGATGCTTTAGTTT-TGTTAGAAAGGCTTTCTTC-CAACCA
193 TCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT-TAAGAAAGGCTTTTTTCTC-ACCA
* * * * * *
1023945 ATTTTTGTGAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATTATCTTCAT
256 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * *
1024010 TCATTTTGTGATTACGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGTTGATTTTC
321 TCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTTGGATAAATGATATTGATGATTTT-
* * * * *
1024075 TTTTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGG
385 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * **
1024140 CAAGCATCGATTCTCATAATAGTTT
450 CAAGAATCAATTCTCATAACAGTCC
* * *
1024165 CTATTATTTTCAGGATTGGGAAC
1 CCATTCTTTTCAAGATTGGGAAC
1024188 TGATGAGAAC
Statistics
Matches: 1655, Mismatches: 231, Indels: 66
0.85 0.12 0.03
Matches are distributed among these distances:
471 23 0.01
472 121 0.07
473 312 0.19
474 766 0.46
475 279 0.17
476 154 0.09
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (474 bp):
CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACAAAATACACATACTATTCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
TCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACCAATTTT
TGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
TTGTGATTAGGCACTATAAGCACATTCTCCTCATTTGGATAAATGATATTGATGATTTTTTTTGC
ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAA
TCAATTCTCATAACAGTCC
Found at i:1023633 original size:947 final size:944
Alignment explanation
Indices: 1021787--1024187 Score: 3196
Period size: 947 Copynumber: 2.5 Consensus size: 944
1021777 ACACTCTTTT
* * **
1021787 CAATCTCCATTCTTTTCAGGATTGGGAACCTAAAATGCATTCCCTTCATTAGGATACTTGACATT
1 CAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTGACATT
* *
1021852 GATGCTTTGGTATCGCTAGAAGAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTC
66 GATGCTTTGGTGTTGCTAGAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTC
* * *
1021917 TTAAATAAGATAAACATAAATACTCATACTATTCCCTATTCTTTTCATGATTAGGCACCATAAAC
130 TTAAATAAGACAAACATAAATACTCATACTATTCCCCATTCTTTTCACGATTAGGCACCATAAAC
*
1021982 TTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCAC
195 TTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
*
1022047 CAATTTTTGTAAAGTCTAAGTTCATGA--CTCAAATAAGACAAATATGGATTCTAGTAATGATCT
260 CAATTTTTGTAAAGTCTAAGTT--TGAGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCT
* * *
1022110 TCATTCATTTTGTGATTAGGCACTATAAGCACAGTCTCATCATTTCGATAAATGATATTGATGAT
323 TCATTCATTTTGTGATTAGGCACTATAAGCACATTATCATCATTTGGATAAATGATATTGATGA-
* *
1022175 TTTTTTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
387 -TTTTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* *
1022240 TAAGACAAGAATCAATTCTCATAGCAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC
451 TAAGACAAGAATCAATTCCCATAACAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC
* * * * *
1022305 TCTTCATTAGGATATACAACATTCATGCTTTGGTCGCAAGAAAAGCTTTTCTTTTCACCCTTTTT
516 CCTTCATTAGGACACACAACATTCATGCTTTGGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
1022370 GATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATAAACAGTCATACTAATTCCCATTGTTT
581 GATAGAATCAAAGTTTGCCTCTTAAATAACACAAACAGAAACAG-CATACTAATTCCCATTGTTT
* * * * *
1022435 TCGGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTTG
645 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTT-
* * * * ** *
1022500 CTAGAAAGGCTTTCTTCTGACCAATTTTTGTAAAGTTTATGTCCATGCCTCAAATGAGCCAAACA
709 CTACAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTCCATGCCTCAAACAAGACAAACA
* * *
1022565 TGGATTCTAGTATTGATCTTCATTCATTTTTTGATTAGGCACTGTGAACACATTCTCCCCATTAG
774 TGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACAGTCTCCCCATTAG
* * *
1022630 GATAAATGATATTGATGATTTTCTTTGACATGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATT
839 GATAAATGATATTGATGATTTTCTTTGACATGAAATCTTCTCTTTACCCCATTTTCCTTAAAATC
* * *
1022695 AAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTCGTAA
904 AAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCATAA
* * * *
1022735 CAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAAGATACTTGACATT
1 CAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTGACATT
1022800 GATGCTTTGGTGTTGCTAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCT
66 GATGCTTTGGTGTTGCTAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCT
* * * * *
1022865 TAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCACCATTACGCACCATAAACT
131 TAAATAAGACAAACATAAATACTCATACTATTCCCCATTCTTTTCACGATTAGGCACCATAAACT
* *
1022930 TAGTCTTCTTATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAGGGCTTTTTTCCCACC
196 TAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
*
1022995 AATTTTTGTAAAGTCTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCA
261 AATTTTTGTAAAGTCTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCA
* * * * * *
1023060 TTCATTTTGTGATTAGGAACTATGAGCACATTTTCGTCATTTGGATAAATGATGTCGATGATTTT
326 TTCATTTTGTGATTAGGCACTATAAGCACATTATCATCATTTGGATAAATGATATTGATGATTTT
* *
1023125 TTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTCAATAAGA
391 TTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* *
1023190 CAATAATCAATTCCCGTAACAGTCCCCATT-TCTTTCAAGATTGGGAACCAAAAACACATTCCCT
456 CAAGAATCAATTCCCATAACAGT-CCCATTCT-TTTCAAGATTGGGAACCAAAAACACATTCCCT
*
1023254 TCATTAGGACACA-AGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
519 TCATTAGGACACACA-ACATTCATGCTTT-G-GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
1023318 TATAGAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACA-CATACT-CTTCCCCATTGT
581 GATAGAATCAAAGTTTGCCTCTTAAATAACACAAAC-AGAA-ACAGCATACTAATT-CCCATTGT
* * * * * *
1023381 TTTCATGATTAGGCTCCATAAACTTATTCTTCTCATTAGGATACACGATATTGGCGCTTT-G-TT
643 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTT
* * * * *
1023444 TCTTAACAAAGGTTTTTTTCTCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACAAGACAA
708 TC-T-ACAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTCCATGCCTCAAACAAGACAA
* * *
1023509 ACATGGATTCTAGTAATT-ATTTTCGTTCATTTTGTGATTAGGCACTAT-AAGCACAGTCTCCTC
771 ACATGGATTCTAGT-ATTGATCTTCATTCATTTTGTGATTAGGCACTATGAA-CACAGTCTCCCC
* * *
1023572 TTTAGGATAAATGATATTGATGATTTTTTTTG-CATGGAAATCTTTTCTTTACCCCATTTTCCTT
834 ATTAGGATAAATGATATTGATGATTTTCTTTGACAT-GAAATCTTCTCTTTACCCCATTTTCCTT
*
1023636 AAAATCAAAGTTCATCTCTTAAATAAGACAAGAATCAATTCTCATAA
898 AAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCATAA
* * * **
1023683 CAATCCCCATTCTTTTCAATATTGGGAACCAAAAACACATTCCCATCATTAGGATACACGACATT
1 CAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTGACATT
* * * * * * *
1023748 CATGCTTTGGTG-T-CATAAGAAACACTTTTCTTTTCAACGTTTTTGATAGAATCAAAGTTTGCC
66 GATGCTTTGGTGTTGC-T-AGAAA-GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTC
* * * **
1023811 TCTTAAATAAGACAAACATAAATAGTCATACTAATCTCCATTCTTTTCGGGATTAGGCACCATAA
128 TCTTAAATAAGACAAACATAAATACTCATACTATTCCCCATTCTTTTCACGATTAGGCACCATAA
* * * * * * *
1023876 A-TATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTAGTTT-TGTTAGAAAGGCTTTCTTC
193 ACT-TAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT-TAAGAAAGGCTTTTTTC
* * * * * * * * *
1023939 CAACCAATTTTTGTGAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATTAT
256 CCACCAATTTTTGTAAAGTCTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAGTAATGAT
* * * * *
1024004 CTTCATTCATTTTGTGATTACGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGTTG
321 CTTCATTCATTTTGTGATTAGGCACTATAAGCACATTATCATCATTTGGATAAATGATATTGATG
* *
1024069 ATTTTCTTTTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAA
386 ATTTT-TTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * * * * * *
1024134 ATAAGGCAAGCATCGATTCTCATAATAGTTTCTATTATTTTCAGGATTGGGAAC
450 ATAAGACAAGAATCAATTCCCATAACAG-TCCCATTCTTTTCAAGATTGGGAAC
1024188 TGATGAGAAC
Statistics
Matches: 1271, Mismatches: 158, Indels: 46
0.86 0.11 0.03
Matches are distributed among these distances:
945 90 0.07
946 70 0.06
947 454 0.36
948 300 0.24
949 257 0.20
950 98 0.08
951 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (944 bp):
CAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTGACATT
GATGCTTTGGTGTTGCTAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCGTCTCT
TAAATAAGACAAACATAAATACTCATACTATTCCCCATTCTTTTCACGATTAGGCACCATAAACT
TAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
AATTTTTGTAAAGTCTAAGTTTGAGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCA
TTCATTTTGTGATTAGGCACTATAAGCACATTATCATCATTTGGATAAATGATATTGATGATTTT
TTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
CAAGAATCAATTCCCATAACAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
ATTAGGACACACAACATTCATGCTTTGGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
AATCAAAGTTTGCCTCTTAAATAACACAAACAGAAACAGCATACTAATTCCCATTGTTTTCAGGA
TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTTCTACAAA
GGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTCCATGCCTCAAACAAGACAAACATGGATTC
TAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACAGTCTCCCCATTAGGATAAAT
GATATTGATGATTTTCTTTGACATGAAATCTTCTCTTTACCCCATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAATAAGACAAGAATCAATTCTCATAA
Found at i:1025842 original size:9 final size:9
Alignment explanation
Indices: 1025828--1025888 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
1025818 GGATGATATG
1025828 AGGAGAGAT
1 AGGAGAGAT
1025837 AGGAGAGAT
1 AGGAGAGAT
*
1025846 AGTAGAGAT
1 AGGAGAGAT
* *
1025855 AGAAGGGAT
1 AGGAGAGAT
*
1025864 --GATAGA-
1 AGGAGAGAT
1025870 AGGAGAGAT
1 AGGAGAGAT
1025879 AGGAGAGAT
1 AGGAGAGAT
1025888 A
1 A
1025889 ATAGAGAGAG
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
7 3 0.07
8 5 0.12
9 34 0.81
ACGTcount: A:0.46, C:0.00, G:0.41, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1025862 original size:42 final size:41
Alignment explanation
Indices: 1025798--1025917 Score: 159
Period size: 42 Copynumber: 2.9 Consensus size: 41
1025788 TAGCCCTCAA
* *
1025798 AGAGAAAGAAGAGATAGGAGGGATGATATGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATA-GAGGAGAGATAGG
*
1025840 AGAGATAGTAGAGATAGAAGGGATGATAGAAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAG-AGGAGAGATAGG
* * *
1025882 AGAGATAATAGAGAGAGGAGGGATAATAGGAGGAGA
1 AGAGATAGTAGAGATAGGAGGGATGATA-GAGGAGA
1025918 AGAGAAGAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 67 0.97
43 1 0.01
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (41 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGAGGAGAGATAGG
Found at i:1025892 original size:24 final size:23
Alignment explanation
Indices: 1025807--1025898 Score: 79
Period size: 24 Copynumber: 4.2 Consensus size: 23
1025797 AAGAGAAAGA
* *
1025807 AGAGATAGGAGGGATGATATGAGG
1 AGAGATAGGAGAGATAATA-GAGG
*
1025831 AGAGATAGGAGAGATAGTAGA-G
1 AGAGATAGGAGAGATAATAGAGG
* *
1025853 ATAGA-A-G-G-GATGATAGAAGG
1 AGAGATAGGAGAGATAATAG-AGG
1025873 AGAGATAGGAGAGATAATAGA-G
1 AGAGATAGGAGAGATAATAGAGG
1025895 AGAG
1 AGAG
1025899 GAGGGATAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
18 6 0.11
19 2 0.04
20 6 0.11
21 2 0.04
22 11 0.20
23 4 0.07
24 23 0.43
ACGTcount: A:0.45, C:0.00, G:0.41, T:0.14
Consensus pattern (23 bp):
AGAGATAGGAGAGATAATAGAGG
Found at i:1025900 original size:18 final size:18
Alignment explanation
Indices: 1025873--1025910 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1025863 TGATAGAAGG
*
1025873 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
*
1025891 AGAGAGAGGAGGGATAAT
1 AGAGAGAGGAGAGATAAT
1025909 AG
1 AG
1025911 GAGGAGAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.39, T:0.13
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1033241 original size:158 final size:157
Alignment explanation
Indices: 1031942--1034192 Score: 778
Period size: 159 Copynumber: 14.2 Consensus size: 157
1031932 TAGGAACCTA
* * * *
1031942 AAACATATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACATATTCTCC-TCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAG-AAAGCCTTT-T
* * * * *
1032006 TTCC-ACC-GTTTTTGATAGAGTCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATACTCAT
63 TCCCTACCAATTTTTG-TAAAGTCAAAGTTCATG-C-CTTAAATGAGACAAACATGGAT--TC-T
* * *
1032067 AGTAATC--C-CCATTCTTTTATGGATTAGGAACCAT
122 AGTAATCATCTTCATTCTTTTGT-GATTAGGCACCAT
* * * * *
1032101 AAACATAGTCTTCTCATTAGGA-AACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTC
1 AAACATATTCTCCTCATTAGGATAA-ATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTC
* * * * * * * * *
1032165 CCTACAAATTTTAGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTATTGA
65 CCTACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATCA
*
1032230 TCTTCATTCATTTTGTGATTAGGCACTAT
130 TCTTCATTC-TTTTGTGATTAGGCACCAT
* * * * ** * *
1032259 GAACACATTCTCCTCATTAGAATAAATGATATTGATGATTTTCTTTTGCAGAGAAA-TC-TTTTC
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCA-AGAAAGCCTTTTTC
** * * * * *
1032322 TTTGTCCAATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATGAAACAAACATTGATTCTCA-TA
65 CCT-ACCAATTTT--TGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCT-AGTA
* * * *
1032385 AT-AGTCTCCATTCTTTTCTGGATT-GAGAACCAA
126 ATCA-TCTTCATTCTTTTGT-GATTAG-GCACCAT
* * * * *
1032418 AAACACATTC-CCTTCATTAGGATACAA-AACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
1 AAACATATTCTCC-TCATTAGGATA-AATGATATTGATGCTTTGGTTTCGCAAG-AAAGCCTTT-
* * ** * * *
1032481 TTTCC-ACC-ATTTTTGATAGAA-TCAAAG--CTTGCCTTTAAAACAAACAAAAAT--AGTC-A-
62 TTCCCTACCAATTTTTG-TA-AAGTCAAAGTTCATGCC-TTAAATGAGACAAACATGGATTCTAG
* ** *
1032537 -AACTAATCCCCATGCTTTTCAG-GATTAGGCACCAT
124 TAA-TCATCTTCATTCTTTT--GTGATTAGGCACCAT
* * ** * *** **
1032572 AAACATAGTCTTCTCATTAGGATATGTGATATTGATGTTTTGGTTTCATGAGAAATGTTTTTTTC
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAA-GCCTTTTTC
* * * * *
1032637 CC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAG-CTAAACAAGGATTCTA-TCATT
65 CCTACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGAC-AAACATGGATTCTAGT-AAT
* * ** *
1032699 AATCCTCATTCATTTTGTGATTACACACTAT
128 CATCTTCATTC-TTTTGTGATTAGGCACCAT
* * * ** * * ** *
1032730 AAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTTTTTGGCATGAAAATC-TTTTCT
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTCC
* * * * * * * * * *
1032794 ATGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA-C
66 CT-ACCAATTTTT-GTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATC
* *
1032858 AGTCTCCATTCTTTT-TAGGATT-GAGAACC-T
129 A-TCTTCATTCTTTTGT--GATTAG-GCACCAT
* * * * *
1032888 AAAACATATT-TCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTC
1 -AAACATATTCTCC-TCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAG-AAAGCCTTT-
** * * * *
1032952 TTTTCT-CC-ATTTTTGATAGAGTCAAAGTT--TGTCTCTTAAATCAGACTAACATGAATACTCA
62 TTCCCTACCAATTTTTG-TAAAGTCAAAGTTCATG-C-CTTAAATGAGACAAACATGGAT--TC-
* ** * *
1033013 TAGTAATC--C-CCATTCTCCTATGCATTAGGTACCAT
121 TAGTAATCATCTTCATTCTTTTGTG-ATTAGGCACCAT
* * * * *
1033048 AAACATAGTCTTCTCATTAGGATAGACGATGTTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTCC
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTCC
* * *
1033113 CTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
66 CTACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATCAT
* * *
1033178 ATTCTTTCATTTTGTGATTAGGCACTAT
131 CTTCATTC-TTTTGTGATTAGGCACCAT
* * ** * ** ** *
1033206 AAACATATTCTCCACATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATC-TTTTCT
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTCC
* * ** * * * * * * *
1033270 TTGCTCTGTTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGCTTCTCGTAAT
66 CTAC-CAATTTT--TGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAAT
** * * *
1033334 -AGTCCCCATTCTTTT-TAGGATTGGGAACCAA
128 CA-TCTTCATTCTTTTGT--GATTAGGCACCAT
* * * * * * * *
1033365 AAACACAATC-CGTTAAGTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
1 AAACATATTCTC-CTCATTAGGATA-AATGATATTGATGCTTTGGTTTCGCAAG-AAAGCCTTT-
** * * * *
1033428 TTTTC-ACC-ATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATGAATGCTCA
62 TTCCCTACCAATTTTTG-TA-AAGTCAAAGTTCATGC-CTTAAATGAGACAAACATGGATTCT-A
* ** **
1033489 -TACT-ATTCCCCATTCTTTTCAAGATTAGGCACCAT
123 GTAATCA-TCTTCATTCTTTT-GTGATTAGGCACCAT
* * * * * * *** * *
1033524 AAACCTAGATCT-CTCATTAGGATACACGATATTGGTGCCTTGGTTTCTTTAGAAAGGCTTTTGA
1 AAACATA-TTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTT-T
* ** * * * * * *
1033588 GCC-ACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATGAGCCAAAGAAGTATTCTAGTAATA
64 CCCTACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATC
* *
1033652 ATCTTCATTCATTTTGTGATTTGGCACTAT
129 ATCTTCATTC-TTTTGTGATTAGGCACCAT
* * * * * * ** * * *
1033682 AAACACATTCTGCTCGTTAGGATAAAAGATATTGATGATTT-TTTTTTCATGGAAATCATTTCTT
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCA-AGAAAGCCTTT-TT
** * * * * ** **
1033746 TGC--CCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTCA-TA
64 CCCTACCAATTTT--TGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCT-AGTA
** *** * * *
1033807 A-CAATCCCCATTCTTTCAAGATTGGGAACCAA
126 ATC-ATCTTCATTCTTTTGTGATTAGGCACCAT
* * * *
1033839 AAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTT-GCAAAAAAAG-CTTTT
1 AAACATATTCTCC-TCATTAGGATAAATGATATTGATGCTTTGGT-TTCGC-AAGAAAGCCTTTT
** * * *
1033901 CTTTCTACC-ATTTTTGATAGAA-TCAAAGTT--TGCCTCCTAAATAAGACAAACATGAATACTT
63 -TCCCTACCAATTTTTG-TA-AAGTCAAAGTTCATGCCT--TAAATGAGACAAACATGGATTC-T
* * ** * *
1033962 A-TACTAATCCCCATTCTTTTTGGGATTAGCCACCAT
122 AGTAATCATCTTCATTC-TTTTGTGATTAGGCACCAT
* * * ** * * * * *
1033998 AAACATAGTCTTCTCATAAGGATGCACGATATTAATGCTTTGGTTTTGCTAGAAAGGCTTTCTTC
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTT-TTC
* * * * ** ** * *
1034063 CC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAATGTATATTCTAGTATTGA
65 CCTACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATCA
* *
1034127 TCTTCATTAATTTTGTGATTAGGCACTAT
130 TCTTCATT-CTTTTGTGATTAGGCACCAT
* * * *
1034156 GAACACATTTTCCTTATTAGGATAAATGATATTGATG
1 AAACATATTCTCCTCATTAGGATAAATGATATTGATG
1034193 ATTCTTTTTG
Statistics
Matches: 1532, Mismatches: 417, Indels: 287
0.69 0.19 0.13
Matches are distributed among these distances:
152 2 0.00
153 20 0.01
154 80 0.05
155 21 0.01
156 22 0.01
157 107 0.07
158 587 0.38
159 625 0.41
160 44 0.03
161 9 0.01
162 14 0.01
163 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
AAACATATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTCC
CTACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATCAT
CTTCATTCTTTTGTGATTAGGCACCAT
Found at i:1033242 original size:476 final size:474
Alignment explanation
Indices: 1031935--1034404 Score: 3238
Period size: 476 Copynumber: 5.2 Consensus size: 474
1031925 CTGTCATTAG
* *
1031935 GAACCTAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * *
1032000 TTTTCTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
66 TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * * *
1032065 ATAGTAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGAAACACGA
131 ATACTAATCCCCATTCTTTTATGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGA
* * * * *
1032130 TATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCTACAAATTTTAGTAAACTCTAAGTTCGT
196 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
1032195 GCCTCAAATGAGACAAACATAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATG
260 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
*
1032260 AACACATTCTCCTCATTAGAATAAATGATATTGATGATTTTCTTTTGCA-GAGAAATCTTTTCTT
325 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGA-AAATCTTTTCTT
* * * * *
1032324 TGTCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATGAA-ACAAACATTGATTCTCATAATA
388 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTCTCGTAATA
1032388 GTCTCCATTCTTTTCT-GGATTGA
452 GTCTCCATTCTTTT-TAGGATTGA
**
1032411 GAACCAAAAACACATTCCCTTCATTAGGATACAAAACATTGATGCTTTGGTGTCGCAAGAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * ** *
1032476 TTTTCTTTCCACCATTTTTGATAGAATCAAAGCTTG-C-CTT---TAAAACAAACAAAAATAGTC
66 TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * *
1032536 AAACTAATCCCCATGCTTTTCA-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATG-T
131 ATACTAATCCCCATTCTTTT-ATGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA-GAC
* *** **
1032599 GATATTGATGTTTTGGTTTCATGAGAAATGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
194 GATATTGATGCTTTGGTTTCGCAAGAAA-GGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * * **
1032664 ATGCCTCAAATAAG-CTAAACAAGGATTCTA-TCATTAATCCTCATTCATTTTGTGATTACACAC
258 ATGCCTCAAATGAGAC-AAACATGGATTCTAGT-AATGATCTTCATTCATTTTGTGATTAGGCAC
*
1032727 TATAAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTTTTTGGCATGAAAATCTTTT
321 TATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTT-GCATGAAAATCTTTT
* *
1032792 CTATGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
385 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
*
1032857 CAGTCTCCATTCTTTTTAGGATTGA
450 TAGTCTCCATTCTTTTTAGGATTGA
* * * *
1032882 GAACCTAAAACATATTTCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * *
1032947 TTTTCTTTTCTCCATTTTTGATAGAGTCAAAGTTTGTCTCTTAAATCAGACTAACATGAATACTC
66 TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* ** * *
1033012 ATAGTAATCCCCATTCTCCTATGCATTAGGTACCATAAACATAGTCTTCTCATTAGGATAGACGA
131 ATACTAATCCCCATTCTTTTATGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGA
* *
1033077 TGTTGATGCTTTGGTTTCGCAAGAAAGCCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCAT
196 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCAT
* *
1033142 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATATTCTTTCATTTTGTGATTAGGCACTATA
260 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
1033207 AACATATTCTCCACATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTT
325 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTT
* * * *
1033272 GCTCTGTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGCTTCTCGTAATAGT
389 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGT
* *
1033337 CCCCATTCTTTTTAGGATTGG
454 CTCCATTCTTTTTAGGATTGA
* * * * *
1033358 GAACCAAAAACACAATCCGTTAAGTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* *
1033423 TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATGCTC
66 TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * * *
1033488 ATACTATTCCCCATTCTTTTCA-AGATTAGGCACCATAAACCTAGATC-TCTCATTAGGATACAC
131 ATACTAATCCCCATTCTTTT-ATGGATTAGGCACCATAAACATAG-TCTTCTCATTAGGATAGAC
* * *** ** *
1033551 GATATTGGTGCCTTGGTTTCTTTAGAAAGGCTTTTGAGCCACCAATTTTTGTAAAGTTTAAGTTC
194 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * * *
1033616 ATGCCTCAAATGAGCCAAAGAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTA
258 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * *
1033681 TAAACACATTCTGCTCGTTAGGATAAAAGATATTGATGATTTTTTTTTCATGGAAATCATTTCTT
323 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGAAAATCTTTTCTT
* * * * *
1033746 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTCATAACAA
388 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAG
* * * *
1033811 TCCCCATTC-TTTCAAGATTGG
453 TCTCCATTCTTTTTAGGATTGA
* *
1033832 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAAAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* *
1033897 TTTTC-TTTCTACCATTTTTGATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACATGAATACT
66 TTTTCTTTTC-ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * *
1033961 TATACTAATCCCCATTCTTTT-TGGGATTAGCCACCATAAACATAGTCTTCTCATAAGGAT-GCA
130 CATACTAATCCCCATTCTTTTAT-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAG-A
* * *
1034024 CGATATTAATGCTTTGGTTTTGCTAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
193 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTT
* * ** ** * *
1034089 CGTGCCTCAAATGAGCCAAATGTATATTCTAGTATTGATCTTCATTAATTTTGTGATTAGGCACT
257 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * * * *
1034154 ATGAACACATTTTCCTTATTAGGATAAATGATATTGATGATTCTTTTTGCGTGGAAATCTTTTCT
322 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGAAAATCTTTTCT
*
1034219 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-AAGATAAGCATCGATTCTCGTAATA
387 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATA
* * * *
1034283 GTATCCACTCTTTTCAAGATT-A
452 GTCTCCATTCTTTTTAGGATTGA
* * *
1034305 GGAACCAAAAACACATTCCCGTT-ATTAGTATACTTGACATTGATGCTTTGGTGTCGCTAGAAAA
1 -GAACCAAAAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
*
1034369 GCTTTTC-TTTCACCATTTTTGAAAGAATCAAAGTTT
64 GCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTT
1034405 AACTTTTGAT
Statistics
Matches: 1738, Mismatches: 224, Indels: 67
0.86 0.11 0.03
Matches are distributed among these distances:
470 9 0.01
471 387 0.22
472 13 0.01
473 59 0.03
474 456 0.26
475 98 0.06
476 705 0.41
477 11 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
ATACTAATCCCCATTCTTTTATGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGA
TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
CCATTCTTTTTAGGATTGA
Found at i:1039991 original size:28 final size:27
Alignment explanation
Indices: 1039952--1040028 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
1039942 TTTGGGAGAT
1039952 AATAACGGGGTTGGAGTATCCCC-TCGA
1 AATAACGGGGTTGGAGTATCCCCAT-GA
1039979 AGATAACGGGGTTGGAGTATCCCCGATGA
1 A-ATAACGGGGTTGGAGTATCCCC-ATGA
* *
1040008 AATAATGAGGTTGGAGTATCC
1 AATAACGGGGTTGGAGTATCC
1040029 TCGATTGTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 1 0.02
28 40 0.89
29 3 0.07
30 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (27 bp):
AATAACGGGGTTGGAGTATCCCCATGA
Found at i:1040086 original size:52 final size:52
Alignment explanation
Indices: 1040017--1040400 Score: 259
Period size: 51 Copynumber: 7.4 Consensus size: 52
1040007 AAATAATGAG
*
1040017 GTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGA
** * * * *
1040069 GTTGGAGTATCCCCGATTAAAGGAAAATTGATGTTTTGA-AAATAAAA-CTGGG
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTTAGAAATAAAATC-GGA
* * * * *
1040121 GTTGAAGTATCCCCGATTGTGGAAAATTAGTG-TTTTAGAAATAAAACCGGT
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGA
* * *** * * * * *
1040172 GTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAAG-AATAAAGTAGGG
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGA
* * *** * * *
1040223 GTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGGAGTATCCCAGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTGT-TTTTAGA-AATAAAATCGGA
*
1040278 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTTAGAAATAAAATCGGA
* * *
1040331 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGA-AAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTTAGAAATAAAATCGGA
* *
1040382 GTGGGAATATCCCCGATTG
1 GTTGGAGTATCCCCGATTG
1040401 CGGAGAATTG
Statistics
Matches: 254, Mismatches: 57, Indels: 43
0.72 0.16 0.12
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 4 0.02
51 99 0.39
52 65 0.26
53 47 0.19
54 2 0.01
55 20 0.08
56 1 0.00
57 6 0.02
58 4 0.02
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGA
Found at i:1040165 original size:51 final size:50
Alignment explanation
Indices: 1040016--1040189 Score: 199
Period size: 52 Copynumber: 3.4 Consensus size: 50
1040006 GAAATAATGA
* *
1040016 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAA-TCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAATT-GTG-TTTTAGAAATAAAACT-GG
* **
1040068 AGTTGGAGTATCCCCGATTAAAGGAAAATTGATGTTTT-GAAAATAAAACTGG
1 GGTTGGAGTATCCCCGATT-GTGGAAAATTG-TGTTTTAG-AAATAAAACTGG
* *
1040120 GGTTGAAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAATT-GTGTTTTAGAAATAAAACTGG
*
1040171 TGTTGGAGTATCCCCGATT
1 GGTTGGAGTATCCCCGATT
1040190 ATGAGAAATC
Statistics
Matches: 104, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
51 43 0.41
52 51 0.49
53 10 0.10
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGGAAAATTGTGTTTTAGAAATAAAACTGG
Found at i:1040254 original size:28 final size:27
Alignment explanation
Indices: 1040220--1040293 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
1040210 GAATAAAGTA
**
1040220 GGGGTTGGAGTATCCCCTCGGAAATAAC
1 GGGGTTGGAGTATCCCCGAGG-AATAAC
* * *
1040248 GGGGTTGGAGTATCCCAGATGATTAAC
1 GGGGTTGGAGTATCCCCGAGGAATAAC
1040275 GGGGTTGGAGTATCCCCGA
1 GGGGTTGGAGTATCCCCGA
1040294 TTGTGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.23
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGAGGAATAAC
Found at i:1042843 original size:13 final size:13
Alignment explanation
Indices: 1042825--1042878 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 13
1042815 AGCTTCGTAG
1042825 CGATACATTGTAT
1 CGATACATTGTAT
1042838 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
1042857 CGATACATTGTAT
1 CGATACATTGTAT
1042870 CGATACATT
1 CGATACATT
1042879 TTCTGTTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 19 0.54
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.29
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1043794 original size:59 final size:60
Alignment explanation
Indices: 1043495--1044447 Score: 1063
Period size: 59 Copynumber: 16.4 Consensus size: 60
1043485 ATAAAGTGCA
* *
1043495 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAAC-TGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
1043549 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
1043604 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTCTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * * *
1043659 TCCTGCTTTTTGGGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
*
1043720 TCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTTGTGT-GGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
1043779 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTCGAAAAAAAAAAGCA
1 TCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTT-TAAAAGAAAAGGCG
* * *
1043840 TCATGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
1043899 TTCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * ** *
1043958 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACTAACTTCTGTGGGCTTTGAAAAGAAAAAACA
1 TCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
1044019 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGTTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
1044078 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
1044137 TCCTGCTCTTTGAGGACT-GAAGGTGTCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
1044196 TCCTGCTCTTTAAGGACTGGAAAA--TGCCACCAACTTGTGT-GGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * *
1044250 TCCTGATCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGTG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
1044311 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
1044366 TCCTACTCTTTGAGGACTGAAAA-GTGCCATCAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
1044427 TCCTGCTCTTTGAGGACTAAA
1 TCCTGCTCTTTGAGGACTAAA
1044448 GGGCGAAAGG
Statistics
Matches: 778, Mismatches: 75, Indels: 86
0.83 0.08 0.09
Matches are distributed among these distances:
52 3 0.00
53 4 0.01
54 69 0.09
55 150 0.19
56 4 0.01
57 4 0.01
58 4 0.01
59 272 0.35
60 95 0.12
61 169 0.22
62 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:1043959 original size:179 final size:178
Alignment explanation
Indices: 1043481--1044449 Score: 1181
Period size: 179 Copynumber: 5.5 Consensus size: 178
1043471 AAAGAAAGAG
* *
1043481 GAAAATAAAGTGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAAC-TGTGTGGGCTTT----
1 GAAAAAAAAG-GCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1043541 G-AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---A
64 GAAAAGGCATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAA
* *
1043600 GGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTCTGGGCTTT
128 GGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
** * * *
1043651 G-----AAAGGTGTCCTGCTTTTTGGGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAA
1 GAAAAAAAAGGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAA
* * *
1043711 GAAAAAGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTTGTGT-GGCTTTAAAAGAAAA
64 GAAAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAA
*
1043775 GGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTC
128 GGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
1043826 GAAAAAAAAAAGCATCATGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 G-AAAAAAAAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
1043891 AAAAGACGTTCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAGG
65 AAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGG
* *
1043956 CGTCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTCTGTGGGCTTT
130 CGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
** * *
1044005 GAAAAGAAAAAACATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGTTTTAAAAG
1 GAAAA-AAAAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
1044070 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGG
65 AAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGG
* ** *
1044135 CATCCTGCTCTTTGAGGACT-GAAGGTGTCACCAACTTGTGTGGGCTTT
130 CGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
1044183 -AAAAGAAAAGGCGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGT-GGCTTT----
1 GAAAA-AAAAGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * *
1044242 G-AAAGGCATCCTGATCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGA
64 GAAAAGGCATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAA
* * *
1044306 AGGTGTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
127 AGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT
* * *
1044358 G-----AAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCATCAACTTGTGTGGGCTTTAAAAG
1 GAAAAAAAAGGCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAA-
* *
1044418 GAGAAGGCATCCTGCTCTTTGAGGACTAAAGG
64 GAAAAGGCATCCTGCTCTTTGAGGACTGAAGG
1044450 GCGAAAGGAG
Statistics
Matches: 698, Mismatches: 66, Indels: 64
0.84 0.08 0.08
Matches are distributed among these distances:
163 3 0.00
164 28 0.04
165 15 0.02
169 1 0.00
170 49 0.07
171 49 0.07
172 26 0.04
173 28 0.04
174 30 0.04
175 73 0.10
176 5 0.01
177 54 0.08
178 64 0.09
179 228 0.33
180 23 0.03
181 22 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (178 bp):
GAAAAAAAAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGA
AAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:1044087 original size:238 final size:229
Alignment explanation
Indices: 1043487--1044444 Score: 1172
Period size: 238 Copynumber: 4.1 Consensus size: 229
1043477 AGAGGAAAAT
*
1043487 AAAGTGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAAC-TGTGTGGGCTTTGAAAGGCATC
1 AAAG-GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGT-GGCTTTGAAAGGCATC
*
1043551 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAG---AGGTGTCCTGC
64 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGC
** * * * *
1043610 TCTTTGAGGACTGGAAAATGCCACCAACTTGTCTGGGCTTTGAAAGGTGTCCTGCTTTTTGGGGA
129 TCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
*
1043675 CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGA
193 CTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGA
* *
1043713 AAAAGCATCCTGCTCTTTGAGGACT-AAAAGGTGCCACTAACTTGTGTGGCTTTAAAAGAAAAGG
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAACTTGTGTGGCTTT----G-AAAGG
* * * * * *
1043777 CGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTCGAAAAAAAAAAGCAT
60 CATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGT
* * *
1043841 CATGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGACGTTCTGCT
124 CCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTGCT
*
1043906 CTTTGAGGACTG-AAGGTGCCACCAACTTATGTGGGCTTTAAAAGA
184 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* * *
1043951 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAA-TGCCACTAACTTCTGTGGGCTTTGAAAAGAAAA
1 AAAGGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGT-GGCTTTG-AAAG----
* *
1044015 AACATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGG-TTTTAAAAGAAAAGGCG
59 -GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCG
*
1044078 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCTGC
123 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTGC
*
1044143 TCTTTGAGGACTG-AAGGTGTCACCAACTTGTGTGGGCTTTAAAAGA
183 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* *
1044189 AAAGGCGTCCTGCTCTTTAAGGACTGGAAAA-TGCCACCAACTTGTGTGGCTTTGAAAGGCATCC
1 AAAGGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGCTTTGAAAGGCATCC
* * * * *
1044253 TGATCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGTGTCCTACT
65 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCT
*
1044318 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
130 CTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* *
1044383 TGAAAAGTGCCATCAACTTGTGTGGGCTTTAAAAGGA
194 TGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GA
*
1044420 GAAGGCATCCTGCTCTTTGAGGACT
1 AAAGGCATCCTGCTCTTTGAGGACT
1044445 AAAGGGCGAA
Statistics
Matches: 644, Mismatches: 55, Indels: 61
0.85 0.07 0.08
Matches are distributed among these distances:
224 4 0.01
225 37 0.06
226 8 0.01
229 25 0.04
230 75 0.12
231 47 0.07
232 23 0.04
233 34 0.05
234 27 0.04
235 31 0.05
236 23 0.04
237 7 0.01
238 207 0.32
239 52 0.08
240 44 0.07
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (229 bp):
AAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGCTTTGAAAGGCATCCT
GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
TTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
Found at i:1044336 original size:26 final size:26
Alignment explanation
Indices: 1044305--1044387 Score: 71
Period size: 26 Copynumber: 3.1 Consensus size: 26
1044295 TTGAAAAGAG
1044305 AAGGTGTCCTACTCTTTGAGGACTGA
1 AAGGTGTCCTACTCTTTGAGGACTGA
* * *
1044331 AAGGTG-CC-ACCAACTTGTGTGGGCTTTGA
1 AAGGTGTCCTA-C-TCTT-TGAGGAC--TGA
*
1044360 AAGGCGTCCTACTCTTTGAGGACTGA
1 AAGGTGTCCTACTCTTTGAGGACTGA
1044386 AA
1 AA
1044388 AGTGCCATCA
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
24 1 0.02
25 3 0.07
26 14 0.33
27 5 0.12
28 5 0.12
29 11 0.26
30 3 0.07
31 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
AAGGTGTCCTACTCTTTGAGGACTGA
Found at i:1044536 original size:100 final size:100
Alignment explanation
Indices: 1044363--1044547 Score: 307
Period size: 100 Copynumber: 1.9 Consensus size: 100
1044353 GCTTTGAAAG
* * *
1044363 GCGTCCTACTCTTTGAGGACTGAAAAGTGCCATCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGAGGGCTTTAAAAGGAAAAGGCAT
*
1044428 CCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGA
66 CCTACTCTTTGAGGACTAAAGGGCGAAAGGAGAGA
* **
1044463 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGAGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGAGGGCTTTAAAAGGAAAAGGCAT
1044528 CCTACTCTTTGAGGACTAAA
66 CCTACTCTTTGAGGACTAAA
1044548 AAGCGGAAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (100 bp):
GCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGAGGGCTTTAAAAGGAAAAGGCAT
CCTACTCTTTGAGGACTAAAGGGCGAAAGGAGAGA
Found at i:1055907 original size:4 final size:4
Alignment explanation
Indices: 1055900--1055926 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
1055890 AAAATCAAAC
1055900 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1055927 CATCTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:1058026 original size:28 final size:27
Alignment explanation
Indices: 1057987--1058063 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
1057977 TTTTGGAGAT
1057987 AATAACGGGGTTGGAGTATCCCC-TCGA
1 AATAACGGGGTTGGAGTATCCCCAT-GA
1058014 AGATAACGGGGTTGGAGTATCCCCGATGA
1 A-ATAACGGGGTTGGAGTATCCCC-ATGA
* *
1058043 AATAATGAGGTTGGAGTATCC
1 AATAACGGGGTTGGAGTATCC
1058064 TCGATTGTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 1 0.02
28 40 0.89
29 3 0.07
30 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (27 bp):
AATAACGGGGTTGGAGTATCCCCATGA
Found at i:1058201 original size:51 final size:51
Alignment explanation
Indices: 1058051--1058271 Score: 241
Period size: 51 Copynumber: 4.3 Consensus size: 51
1058041 GAAATAATGA
* * * *
1058051 GGTTGGAGTAT-CCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCCT-GATTATGGAAAATTAGTG-TTTTAGAAATAAAACCGG
* * *
1058103 AGTTGGAGTATCCCTGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACCGG
1 GGTTGGAGTATCCCTGATT-ATGGAAAATTAGTGTTTTAG-AAATAAAACCGG
*
1058155 GGTTGGAGTATCCCTGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCTGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGG
* * * * * * *
1058206 GGTTAGAGTATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCTGATTATGGA-AAATTAGTGTTTTAGAAATAAAACCGG
1058257 GGTTGGAGTATCCCT
1 GGTTGGAGTATCCCT
1058272 TCGAAAATAA
Statistics
Matches: 145, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
50 2 0.01
51 81 0.56
52 48 0.33
53 14 0.10
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCTGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGG
Found at i:1058299 original size:79 final size:79
Alignment explanation
Indices: 1058203--1058381 Score: 270
Period size: 79 Copynumber: 2.3 Consensus size: 79
1058193 GAAATAAAAC
* * * * *
1058203 CGGGGTTAGAGTATCCCCGATTATGAGAAATCAATATTTT-GGAAATAAAGCCGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAG-AATAAAGCAGGGGTTCGAGTA
*
1058267 TCCCTTCGAAAATAA
65 TCCCCTCGAAAATAA
*
1058282 CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAGAATAAAGTAGGGGTTCGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAGAATAAAGCAGGGGTTCGAGTAT
*
1058347 CCCCTCGGAAATAA
66 CCCCTCGAAAATAA
1058361 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
1058382 GATTAACGGG
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
79 90 0.99
80 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAACCAATATTTTAAGAATAAAGCAGGGGTTCGAGTAT
CCCCTCGAAAATAA
Found at i:1058372 original size:28 final size:27
Alignment explanation
Indices: 1058334--1058407 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
1058324 GAATAAAGTA
* **
1058334 GGGGTTCGAGTATCCCCTCGGAAATAAC
1 GGGGTTGGAGTATCCCCGAGG-AATAAC
* *
1058362 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGAGGAATAAC
*
1058389 GGGGTTGCAGTATCCCCGA
1 GGGGTTGGAGTATCCCCGA
1058408 TTGTGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGAGGAATAAC
Found at i:1058458 original size:53 final size:51
Alignment explanation
Indices: 1058392--1058514 Score: 149
Period size: 51 Copynumber: 2.4 Consensus size: 51
1058382 GATTAACGGG
* * * *
1058392 GTTGCAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAG-AAAATT--AGTATTTTGAAAATAAAATCGGA
*
1058445 GTTGGAGTATCCCCGATTATAGAAAATTAGTATTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAGAAAATTAGTATTTTGAAAATAAAATCGGA
* *
1058496 GTGGGAATATCCCCGATTG
1 GTTGGAGTATCCCCGATTG
1058515 CGGAGAATTG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
51 36 0.59
53 24 0.39
54 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTAGAAAATTAGTATTTTGAAAATAAAATCGGA
Found at i:1060931 original size:13 final size:13
Alignment explanation
Indices: 1060913--1060964 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
1060903 AGCTTCGTAG
1060913 CGATACATTGTAT
1 CGATACATTGTAT
1060926 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
1060945 CGATACATTGTAT
1 CGATACATTGTAT
1060958 CGATACA
1 CGATACA
1060965 GCACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1060945 original size:19 final size:17
Alignment explanation
Indices: 1060921--1060983 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 17
1060911 AGCGATACAT
1060921 TGTATCGATACAAAACTTA
1 TGTATCGATAC--AACTTA
1060940 TGTATCGATAC-A--T-
1 TGTATCGATACAACTTA
1060953 TGTATCGATACAGCACTTA
1 TGTATCGATACA--ACTTA
1060972 TGTATCGATACA
1 TGTATCGATACA
1060984 TTTTCTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (17 bp):
TGTATCGATACAACTTA
Found at i:1060954 original size:32 final size:32
Alignment explanation
Indices: 1060913--1060985 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
1060903 AGCTTCGTAG
1060913 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
**
1060945 CGATACATTGTATCGATACAGCACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
1060977 CGATACATT
1 CGATACATT
1060986 TTCTGTTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:1061713 original size:42 final size:42
Alignment explanation
Indices: 1061658--1061776 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1061648 TTCTTCTCTC
* * *
1061658 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
*
1061700 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
1061742 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1061777 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:1061717 original size:12 final size:11
Alignment explanation
Indices: 1061691--1061766 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
1061681 TCTATTATCT
*
1061691 CTCCTGTCTCTC
1 CTCCTATCTC-C
1061703 CTCCTATCATCC
1 CTCCTATC-TCC
1061715 CTCCTATCT--
1 CTCCTATCTCC
*
1061724 CTACTATCT--
1 CTCCTATCTCC
1061733 CTCCTATCTCTC
1 CTCCTATCTC-C
1061745 CTCCTATCATCC
1 CTCCTATC-TCC
*
1061757 CTCCTCTCTC
1 CTCCTATCTC
1061767 TTCTTTCTCT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 3 0.05
12 32 0.58
13 4 0.07
ACGTcount: A:0.11, C:0.49, G:0.01, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1061744 original size:9 final size:9
Alignment explanation
Indices: 1061686--1061746 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
1061676 CTCTCTCTAT
1061686 TATCTCTCC
1 TATCTCTCC
*
1061695 TGTCTCTCC
1 TATCTCTCC
* *
1061704 T-CCTAT-C
1 TATCTCTCC
*
1061711 -ATCCCTCC
1 TATCTCTCC
*
1061719 TATCTCTAC
1 TATCTCTCC
1061728 TATCTCTCC
1 TATCTCTCC
1061737 TATCTCTCC
1 TATCTCTCC
1061746 T
1 T
1061747 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1063835 original size:159 final size:157
Alignment explanation
Indices: 1063382--1072022 Score: 2472
Period size: 159 Copynumber: 54.9 Consensus size: 157
1063372 TCATCAACTT
* * * * ** * *
1063382 TTAAATAAGACAAACATGAATACTCACACTATTC-CCTATTCTTTTCACGATTAGGCACCAAAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCC-ATTCTTTTCTGGATTAGGAACCATAAA
** * * * * * ** * *
1063446 CTTAGT-CTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTTTTAAGAAAGGCTTTT-TTCC
65 CACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * * *
1063509 CACCAATTTTTGTAAATTCTAAGTTCGTGCC
129 CACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * ** * * * ** * * * *
1063540 TCAAATGACCCAAACAAGGATTCT-AGTGATAATCTTTATTCATTT-TGTGATTCGGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAA
* * * * * * * * *
1063603 GCACATTCTCCTT-ATTAGGATA-AATGATGTTGATGATGTT-TTTTTACACGGAAATCTTTTCT
64 ACACATTC-CCTTCATTAGGATACAA-GATATTGATGCT-TTGGTGTTGCAAGAAAAGCTTTTC-
**
1063665 TTTCC-TTATTTTTCTTAATATCAAAGTTCATCCC
125 TTTCCACCATTTTT-TTAA-ATCAAAGTTCATCCC
* * * *
1063699 TTAAATAAGACAAACATCAATTCTCATAATAGTCTCCATTCTTTTCTGGATTGGGAACCAAAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
* *
1063764 ACATTCCCTTCATCT-GGATACAAGACATTGATGCTTTGGTGTTACAAGAAAAGCTTTTCTTTCC
66 ACATTCCCTTCAT-TAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* **
1063828 ACCATTTTTGATAGAATCAAAGCTTGC--CTT
130 ACCATTTTT-TTA-AATCAAAG-TT-CATCCC
* ** * * * * * *
1063858 TTAAATAAGACAAACATAAATAGTCAGACTAATCCCCATACTTTT-TAGGATTAGGCATCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCT-GGATTAGGAACCATAAA
* * * ** ** * * *
1063922 CATAGT-CTTCTCATTAGGATACGCGATATTGATATTTTGGT-TTCACAAGAAATGCTTTT-TTC
65 CACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTT
* ** *
1063984 CCACCAATTTTTGTAAAGTTTAAGTTCGA-GCC
128 CCACC-ATTTTTTTAAA-TCAAAGTTC-ATCCC
* * * * * * * * * * * *
1064016 TCAAATGAG-CTAAACAAGGATTCTAACATTAATCTTCATTCATTT-TGTGATTA-CACACTACA
1 TTAAATAAGAC-AAACATGAATTCTCATAATAATCTCCATTCTTTTCTG-GATTAGGA-ACCATA
* * * ** ** *
1064078 AACACATTCTCGTCATTAGGATA-AATGATATTGATGATTTTCT-TTGGCGTGAAAATCTTTTCT
63 AACACATTCCCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCT
* * *** * * *
1064141 ATGCTTTATTTTACTTAAAATCAAAGTTCAACCT
126 TTCCACCATTTT--TTTAAATCAAAGTTCATCCC
* * * * * * * *
1064175 TTAAATAAGACAAGCATCG-ATTCTCATAACAGTCACTATTCTTTTCAGGATTGGGAGCC-TAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCAT-AA
* * * *
1064238 ATAGATTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTC
64 ACACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * * * ** *
1064303 CTCCGTTTTTGATAGAGTCAAAGTTTGTCTC
129 CACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * * * *
1064334 TTAAATAAGACAAACATGAATACTCATAGTAATCCCCATCCTTCTATGCATTAGGTACCATAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
* * * * * * *
1064399 ATACTTTTCC--CACTAGGATACACGATATTGATGCTTTGGT-TTCACAAGAAAGGC-TTT-TTC
66 --ACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTT
* ** * *
1064459 CCTACCAATTTTTGTAAAGTTTAAGTTCGTGCC
128 CC-ACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * *
1064492 TTAAATGAGACAAACAT-AGATTC-CAGTAATGATCTTCTTTCATTT-TGTGATTA-GACACTAT
1 TTAAATAAGACAAACATGA-ATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGA-ACCAT
* * * * ** * * * *
1064553 AAGCACATTCTCC-TAATTAGGATA-AATGATATTGTTGATTTTCTTTTGCATGGAAATCTTTTC
62 AAACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTC
**
1064616 TTTGCC-TTATTTTCTTTAAAATCAAAGTTCAT-CC
125 TTT-CCACCATTTT-TTT-AAATCAAAGTTCATCCC
** * * ** *
1064650 TATAAA-AAGACAAGTATTG-ATTCTCGTAATAATCTCCATTCCTTTCAAGATTGGGAACCA-AA
1 T-TAAATAAGACAAACA-TGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAA
* * * *
1064712 A-ACA-------CATTCGGATACAAGATATTGAT-CTTTGGCGTCGCAAGAAAAGCTTTTCTTTT
64 ACACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * *
1064768 CACCGTTTTTGATAGAATCAAAGTTTATCCC
129 CACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * *** *
1064799 TCAAATAAGACAAACATGAATACACA-AACGCT-TCCCTATTCTTTTCAT-GATTAGGCACCATA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCT-CC-ATTCTTTTC-TGGATTAGGAACCATA
* ** * * * **
1064861 CACTTATT-CTTCTCATTAGGATACACGATATTGCTGCTTTGGT-TT-CTTAAGAAGGGC-TTT-
63 AACACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTC
* * * ** *
1064921 TTCCCACCAATTTTTATAAAGTCTAAGTTTGTGCC
125 TTTCCACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * * * * *
1064956 TCAAATGAGCCAAACAAGTATTCT-AGTAGTAATCTTCAATCATTT-TGTGATTCGGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAA
* * * * ** * * * *
1065019 GCACATT-CTTCTCGTTAGGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
64 ACACATTCCCT-TCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTT
* * *
1065082 TGCACTATTTTCCTTAAAATCAAAGTTCATCCC
127 TCCACCATTTT--TTTAAATCAAAGTTCATCCC
** * * * ** * *
1065115 TTAAATAAGACACGCATCAATTCTCATAACAATCCCCATTCTTTTCAAGATTGGGAACCAAAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
* * * *
1065180 ACATTCCCTTCTTTAGGATACACGACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCA
66 ACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCA
* *
1065245 CCGTTTTTGATAGAATCAAAGTT--TCCCTC
131 CCATTTTT-TTA-AATCAAAGTTCAT-CC-C
* ** * * * * *
1065274 TTAAATAAGATAAACATGAATAGTCAGACTAATCCCCATTCCTTTT-GGGATTAGGCACCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATT-CTTTTCTGGATTAGGAACCATAAA
*** ** * * * * * *
1065338 TGTAGTTTTC-TCATAAGGATGCACGATATTGATG---TGGTTTTGCTAGAAAGGC-TTTCTTTC
65 CACA-TTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* *
1065398 CACCAATTTTTGTAAA-CACTAAGTTCATGCC
129 CACC-ATTTTTTTAAATCA--AAGTTCATCCC
* * * * * * * * * * * *
1065429 TCAAATGAGGCAAACATGGATTCTAATATTGATCTTCATTCATTT-TGTGATTAGGCACTATGAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAAA
* * * ** * * * **
1065493 CACAATCTCC-TCATTAGGATA-AACAATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTT
65 CACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
** * *
1065556 -TGCCGTGTTTTCCTTAAAGTCAAAGTTCATCCT
128 CCACCAT-TTTT--TTAAA-TCAAAGTTCATCCC
* * * * * *
1065589 TTAAATATGACAAGCATCAATTCTCATAATATTCTCCATTATTTT-TAGGATTAGGAACCAAAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCT-GGATTAGGAACCATAAA
* * * ** *
1065653 CACATTTCCTTCCTTAGGATACAAGACATTGATGCTTTGGTGTCACGAGAAAAGCTTTTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* *
1065718 ACCGTTTTTATTAGAATCAAAGTT--TGCCTT
130 ACCATTTTT-TTA-AATCAAAGTTCAT-CC-C
* * * ** * *** *
1065748 TTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCACAATTAGGCACCATAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
** * * * * * * * *
1065813 TTAGT-CTTCTCATTAGGATACACA-ATATTGGTTCTTCGAT-TT-CTTAGGAAAGGCTTTT-TT
66 ACATTCCCT-TCATTAGGATACA-AGATATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTCTT
* * * * * * *
1065873 CCCTCCAAATTTTGTAAAGTCTAAGTTCGTGCC
127 TCCACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * * * *
1065906 TCAAATGAGCCAAATAAGGATTC-CATTAATAATCTTCATTCATTT-TGTGATTCGGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAA
* * * ** * * * *
1065969 GCACAATCTCC-TCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
64 ACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTT
* * * *
1066032 TGCC-CTATTTCCTTAAAATCTAAGTTCATCCC
127 T-CCACCATTT-TTTTAAATCAAAGTTCATCCC
** * * * * * *
1066064 TTAAATAAGACAGGCTTCAATTCTCATAACAATCCCCATTCTTTTCAGGATTGGGAACC-TAAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCAT-AAA
* * * * * *
1066128 CACATTTCCTTCATCAGGATACATGACATTGATGCATTGGTGTCGCAAGAAAAGCTTTTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* * ** *
1066193 ACCATTTTTAATAGAGTC-AAGTTTTGTCTC
130 ACCATTTTT-TTA-AATCAAAG-TTCATCCC
* * * * * * *
1066223 TTAAATATGATAAACATGAATACTCATAGTAATCCCCA-T-TTTTATGGATTAGGTACCATAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
* * * * * * * *
1066286 ATAGT-CTTCTCATTAGGATACATGATGTTGATACTTTGGT-TTCGCAAGAAAGGC-TTT-TTCC
66 ACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTC
* * * *
1066347 CTACCAATTTTTGTAAAGTCTAAGTTCGTGCC
129 C-ACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * *
1066379 TCAAATGAG-CAAAACAT-AGATTCT-AGTATTGATCTTCTTTCATTT-TGTGATTAGGCACTAT
1 TTAAATAAGAC-AAACATGA-ATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGAACCAT
* * ** * *** * *
1066440 AAACACATTCTCCTT-ATTAGGATAAAAGATATTGATGATTTTCTTTTGTGTGGAAATCTTTTCT
62 AAACACATTC-CCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
*
1066504 TTGCC-CTATTTTTTGTAAATTCAAAGTTCATCCC
126 TT-CCACCATTTTTT-TAAA-TCAAAGTTCATCCC
* * * * * * * * *
1066538 TTAAA-AAGACAAGCATCG-ATTCTCCTAACAGTCTCCACTCTTTTCTAGATTGGGAACTAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
** * * * * *
1066601 CACATTCCCTTCATTAGGATACTTGACAGTGATGCTTTGGTGTCGCTAGAAAAGCTTTTATTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* * * **
1066666 ACCGTTTTTGATAGAATCAAAGTTCGTCTT
130 ACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * * * *
1066696 TTAAATAAGACAAACATTAATACTCATACTATTCCCCATTCTTTTCAT-AATTACGCACCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTC-TGGATTAGGAACCATAAA
* ** * *
1066760 CTTAGACTT--C-TCATTAGGATACGCGATATTGGTGCTTTGGT-TT-CTTAAGAAAGGCTTTT-
65 C--ACA-TTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTC
* * * * *
1066819 TTCCCACCAATTTTTGTAAACTCTAAGTTCGTACC
125 TTTCCACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * * * *
1066854 TCAAATAGGCCAAAGAAGGATTCTCATAATAATCTTCAATT-ATTTC-GTGATTACGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATC-TCCATTCTTTTCTG-GATTAGGAACCATAA
* * * * ** * ***
1066917 GCACATTCTCC-TCATTAGGATAAAAGAAATTGATGATTTTCTTTTGTGTG-AAAGTCTTTTCTT
64 ACACATTC-CCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAG-CTTTTCTT
*
1066980 TGCC-CCATTTTCCTTAAAATCAAAGTTCATCCC
127 T-CCACCATTTT--TTTAAATCAAAGTTCATCCC
* * * * * *
1067013 TTAAATAAGGCAAGCATCG-ATTCTCATAATAGTCTCCATTATTTTCAGGATTAGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
* *
1067077 CACATTTCCTTCATTAGGATACAAGACT-TTGATGCTTTGGTGTAGCAAGAAAAGCTTTTCTTTC
65 CACATTCCCTTCATTAGGATACAAGA-TATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * ** *
1067141 CACCGTTTTTAGTAGAATCAAAGTTTGTCTC
129 CACCATTTTT-TTA-AATCAAAGTTCATCCC
* * ** * * * *
1067172 TTAAATAAGTCAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
* * * * * * * * * * *
1067237 ATAGT-CTTCTCATAAGGATGCACGATATTGATGCTTTAGTTTTGCTAGAAAGGC-TTT-TTCCC
66 ACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* ** * * * *
1067299 TACCAATTTTTGTGACGTCTAATTTCGTGCC
130 -ACC-ATTTTT-TTAAATCAAAGTTCATCCC
* * * * * * * * **
1067330 TCAAATGAGACAAACATGGATTCT-AGTATTGATCAT-TATTCATTT-TGTGATTAGGTAGTATA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATC-TCCATTCTTTTCTG-GATTAGGAACCATA
* * * ** * * * *
1067392 AGCACATTCTCC-TCATTATGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
63 AACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
* * *
1067455 TTGCC-CTATATTCCTTAAAATCAAAGTTCATCCC
126 TT-CCACCAT-TT-TTTTAAATCAAAGTTCATCCC
* * * * * * * *
1067489 TTAAATGAGACAAGCATCAATTCTCATAACAGTC-CCTATTCTTTTCAAGG-TTAGGAATCAAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCC-ATTCTTTTC-TGGATTAGGAACCATAA
* * * * *
1067552 ACACATTCCCTTCATTAGGATACACGACATTGATGTTTTGGTGTAGCAAGAAAAGCTTTTCTTTG
64 ACACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * **
1067617 CACCATTTTTGATACAATCAAAGTTCAACTT
129 CACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * ** * *
1067648 TTAAATAAGACAAATATGAATACTCATACTATTCCCCATTCTTTTCAAGATTGGGAACCAAAAAC
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
* * * * * *
1067713 ATATTCCCTTTATTAGGATACACGAAATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTATTTCCA
66 ACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCA
* * * *
1067778 ACGTTTTTGATAGAATCAAAGTT-TTCCTC
131 CCATTTTT-TTA-AATCAAAGTTCATCC-C
** * * * *
1067807 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-GAGATTAGGCACCACAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAAA
** ** * * * *
1067871 CTTAGTTTTC-TC-TTAAGGATGCACA-ATATTGATGCTTTGGTTTTGCTAGAAAGGC-TTTC-T
65 CACA-TTCCCTTCATT-AGGATACA-AGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTT
* * ** *
1067931 TCACACCAATTTTTGTTAAGTCTAAGTTTGTGCC
127 TC-CACC-ATTTTT-TTAAATCAAAGTTCATCCC
* ** * * * * * * * * *
1067965 TCAAATGGGACAAACATGGATTCTAATATTGATCTTCATTCATTT-TGTGATTAGGCACTATGAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAAA
* ** * * *
1068029 CACATTCTCC-TCATTAGGATA-AATGATATTGATGATTTTCTTTTGC------CG-TATT-TTT
65 CACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
*
1068084 ----C------TTAAATTCAAAGTTCACCCC
128 CCACCATTTTTTTAAA-TCAAAGTTCATCCC
* * * * ** * * *
1068105 TTAAATATGGCAAGCATTG-ATTCTCATAATAGTCTCCATT-TTTTCAAGATTGGGAAACAAAAA
1 TTAAATAAGACAAACA-TGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
* *
1068168 CACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* ** ** *
1068233 ACCGTTTTCGATAGAATCAAAGTTTGTCTC
130 ACCATTTT-TTTA-AATCAAAGTTCATCCC
* * * * ** **
1068263 TTAAATTAGACAAACATGAATACACATACTCTTC-CCGATTCTTTTCACGATTA-GACACCATAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCC-ATTCTTTTCTGGATTAGGA-ACCATAA
** * * * * * * * *
1068326 ACTTAGT-CGTCTCATTAGGATACACA-ATATTGGTTCTTTGAT-TT-CTTAGGAAAGGTTTT-T
64 ACACATTCCCT-TCATTAGGATACA-AGATATTGATGCTTTGGTGTTGC-AAGAAAAGCTTTTCT
* *** ** *
1068386 TT-C-CC-----TCTAAAT-TTTGTTTGTGCC
126 TTCCACCATTTTTTTAAATCAAAGTTCATCCC
* * * * * * * *
1068410 TCAAATAAGACAAATAAGGATTC-CAGTAATAATCTTCATTCATTT-TGTGA-TATGGCACTATA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTA-GGAACCATA
* * * * * * * * *
1068472 AGCACGTTCTCTTCATTAGGATTA-ATGATATTGATGACTTT-TTTTTGCATGGAAATCTTTTCT
63 AACACATTCCCTTCATTAGGA-TACAAGATATTGATG-CTTTGGTGTTGCAAGAAAAGCTTTTCT
* *
1068535 TTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCC
126 TT-CCACCATTTT--TTTAAATCAAAGTTCATCCC
* * * * * *
1068569 TTAAAAAAGACAAACATCG-ATTCTTATAATAGTCTCCATTCTTTTCAGGATT-GAGAAACAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAG-GAACCATAA
* * * * *
1068632 ACACATTCCCATCATTAGGATACAAGACATAGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC
64 ACACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
** *
1068697 CACCATTTTCGATAGAATCAAAGTT--TGCCTTT
129 CACCATTTT-TTTA-AATCAAAGTTCAT-CC--C
** * * * *
1068729 TTAAATAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCT-GGATTAGGAACCATAAA
* * * * * * * * * *
1068793 CATAGT-CTTCTCATCAGGATACACGATATTGATGTTTTGGT-TTCACAAGAAAGGCATTT-TTC
65 CACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTT
* *
1068855 CCACCA-ATTTTT---GCAAAG----T--C
128 CCACCATTTTTTTAAATCAAAGTTCATCCC
* ** * * * * * * *
1068875 -TAAATGAGGTAAATAGGGATTCT-AGTAATAATCTTCATT-TATTT-TGTGCTTCGGCACCATA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCT-TTTCTG-GATTAGGAACCATA
* * * ** * * *
1068936 AGCACATTCTCC-TCATTAGGATTA-ATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
63 AACACATTC-CCTTCATTAGGA-TACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
* * * *
1068999 TTGTC-CTATTTTCCTTAAAATCAAAGTTCATCTCT
126 TT-CCACCATTTT--TTTAAATCAAAGTTCATC-CC
* * * * * * ** *
1069034 TTAAA-AAGACAAGCATCG-ACTCTCGTAATAGTCTCCACTCATTTCAAGATTAGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
* ** * * ** * *
1069097 CACATTCCCTTCATTAGTATACTTGACAGTGATGCTTTGGTGTCACTAGAAAAGCTTTTCTTTCA
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* * * *
1069162 ACCGTTTTTGATAGAATCAAAGTTCGTCTC
130 ACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * *
1069192 ATAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTC-TGGATTAGGAACCATAAA
* * * * *
1069256 CTTAGACTT--C-TAATTAGGATACACGATATTGGT-CTTTGGT-TT-CTTAAGAAAGGC-TTT-
65 C--ACA-TTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTC
* * * *
1069313 TTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTTCC
125 TTTC-CACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * * * *
1069349 TCAAATAGGCCAAATAAGGATTCTCGTAATAATCTTCATT-TATTTC-GTGATTACGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCT-TTTCTG-GATTAGGAACCATAA
* * ** ** ** * *** * * *
1069412 ACACATTTTCC-TCATTAGGATAAAAGATCCTGATTATTTTCTTTTGTGTGGAAATCTTTTTTTT
64 ACACA-TTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGC---TTTTC
* * *
1069476 TTTGGCC-CTATTTTACTTAAAATCAAAGTTCATTCC
125 TTT--CCACCATTTT--TTTAAATCAAAGTTCATCCC
* * * * *
1069512 TTAAATAAGACAAGCTTCG-ATTCTCATAATAGTCCCCATTCTTTTCAGGATTAGGAACC-TAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCAT-AA
* * * * *
1069575 ACACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTC
64 ACACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * * ** *
1069640 CACCATTTTTGATAGAGTCAAATTTTGTCTC
129 CACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * * * *
1069671 TTAAATATGACAAACACGAATACTCATAGTAATC-CCTATTCTTTTATGGATTATGTACTATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCC-ATTCTTTTCTGGATTAGGAACCATAAA
* * * * * * * *
1069735 TATA-GCCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAG-AAGGCTTTT-TTCC
65 CACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
* * * *
1069797 CTACCAATTTTTGTAAAGTCTAAGTTCGTGCC
129 C-ACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * ** * * * * * * *
1069829 TCAAATGAGACAAACATGGATTCTGGTAATGATCTTCTTTCATTT-TGTGATTAGGCACTATAAG
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAAA
* * * ** * * *
1069893 TACATTCTCC-TCATTAAGATA-AATGATATTGATGATTTTATTTTGCAGGAAAATCTTTTCTTT
65 CACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
* *
1069956 GCC-CTATTTTCCTTAAACTCAAAGTTCATCCC
128 -CCACCATTTT-TTTAAA-TCAAAGTTCATCCC
* * * * ** * *
1069988 TTAAACAAGACAAGCATCG-ATTCTCATAATAGTGTCCATTCTTTTCAAGATTGGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
*
1070052 CACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* ** **
1070117 ACCATTTTTGATAGAATCAAAGTTTGTCTT
130 ACCATTTTT-TTA-AATCAAAGTTCATCCC
* * ** * * **
1070147 TTAAATAAGACAAACATGAATACACATTCTCATC-CCGGTTCTTTTCACGATTAGGCAA-CATAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCC-ATTCTTTTCTGGATTAGG-AACCATAA
** * * * ** * *
1070210 ACTTAGT--ATTCAGATTAGGAAACCGGATATTGGTGCTTTGGAT-TCT-TAAG-AAAGACTTTT
64 ACACATTCCCTTC--ATTAGGATACAAGATATTGATGCTTTGG-TGT-TGCAAGAAAAG-CTTTT
* * * * * *
1070270 -TTCCCTCAAATTTTTGTAAAGTCTAAGTTCATGCC
124 CTTTCCAC-CATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * * *
1070305 TCAAATGAGACAAACAAGGATT-TTAGTAATAATCTTCATTCATTT-TGTGATTCGGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAA
* * ** * * * *
1070368 GA-ACATTCTCC-TCATTAGGATA-AATGATATCGATGATTTTCTTTTGCATGGAAATCTTTGT-
64 -ACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTT-TC
* *
1070429 TTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCC
125 TTT-CCACCATTTT--TTTAAATCAAAGTTCATCCC
* ** * ** * * * *
1070464 TTAAAAAAGACACGCATCG-ATTCTCGTAATAGGC-CCATTCCTTTCAGGATTGGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
* * * * *
1070527 CATATT-CC--C-TTAGGATACAAGACATTGATTCTTTAGTGTCGCAAGAAAAG-TTTTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* * * **
1070587 ACCGTTTTTGATACAATCAAAGTTCAACTT
130 ACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * * *
1070617 TTAAATAAGACAAATATGAATACTCATACTATTCCCCATTCTTTT-TATGATTAGGCACCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCT-GGATTAGGAACCATAAA
** * * * * * *
1070681 CTTAGTT--TTATAATTAGGGTACATGATATTGGTGCTTT-GT-TT-CTTAAGAAAGGCTTTT-T
65 CACA-TTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTCT
* * * *
1070740 TGCCACCAATTTTTGTAAACTCTAAA-TTCGTACC
126 TTCCACC-ATTTTTTTAAA-TC-AAAGTTCATCCC
* * * * * * * * * * * *
1070774 TCAAATGAGGCAATCAAGTATTCT-AGTAATAATCTTCTTTCATTT-TGTGATTCGGCACTATAA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTTTTCTG-GATTAGGAACCATAA
* * * * ** * * * *
1070837 GCACATTCTCATT-GTTAGGATA-AATGATATTGATGATTTTATTTTGCATGGAAATCTTTTC-T
64 ACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTT
* * *
1070899 TCGC-CGTATTTTCCTTAAAATCAAAGTTAAT-CC
127 TC-CAC-CATTTT--TTTAAATCAAAGTTCATCCC
* * * * * **
1070932 -TACAAAAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTT-TAGGATTTTGAACC-TAA
1 TTA-AATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCT-GGATTAGGAACCAT-A
* * * * *
1070994 AAGACATTCCCTTCATTGGGATACATGACATTGATGCTTTGGTGTTGCAAGAAACGCTTTTCTTT
63 AACACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
* * *
1071059 CCACCATTTTTGATAAAGTCAAAGTTTATCTC
128 CCACCATTTTT-TTAAA-TCAAAGTTCATCCC
* * * * * *
1071091 TTAAATAAGACAAACATGAATACTTATAGTAATCCCCATTC-TCTCATGGATTAGGTACCATAAA
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTC-TGGATTAGGAACCATAAA
* * * * * **
1071155 CATAGT-CTTCTCATTAGGATACACGATATTGATGCTTTGGT-TTCGCAAGAAAGGCTTTT-TCG
65 CACATTCCCT-TCATTAGGATACAAGATATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTT
* * * * * *
1071217 CTACCAATTTATATAAACTCTAAGCTT-GTGCC
128 CCACC-ATTTTTTTAAA-TCAAAG-TTCATCCC
* * * * * * ** * *
1071249 TCAAATGAGACAAACTTGGATTCT-AGTAATGATCTTCGGTCATTTTAT-GATTA-GACACTATA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTC-TTTTCTGGATTAGGA-ACCATA
* * * ** * * *
1071311 AGCACATTCTCC-TCAGTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTT-T
63 AACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
*
1071373 TTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCC
126 TT-CCACCATTTTT-TT-AAATCAAAGTTCATCCC
* * * * ** * * * * *
1071407 TTATATAAAACAAGCATCG-ATTCTCGTAATAGGCCCCATTCCTTTCAGGATTGGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
* *
1071471 CACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* * * **
1071536 ACCGTTTTTGATACAATCAAAGGTCATCTT
130 ACCATTTTT-TTA-AATCAAAGTTCATCCC
* * * * * *
1071566 TTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCATAAG
1 TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTC-TGGATTAGGAACCATAAA
** ** * * * * * *
1071630 CTTAGTTTTC-TCATTAGGATACACGATATTGGTGCTTAGGT-TT-CTTGAGAAAGGCATTTC-T
65 CACA-TTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTCTT
* * * *
1071691 TCCACCAATTTTTGTAAAGTCAATGTTCGTGCC
127 TCCACC-ATTTTTTTAAA-TCAAAGTTCATCCC
* * * * * * * * * * **
1071724 TCAAATGAGCCATACAAGTATTCT-AGT-ATAATCTTC-TT-TTATTTTGTGATTCGGTATTATA
1 TTAAATAAGACAAACATGAATTCTCA-TAATAATCTCCATTCTT-TTCTG-GATTAGGAACCATA
** ** * ** * * *
1071785 AGTACATTCTCC-AAATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
63 AACACATTC-CCTTCATTAGGATACAA-GATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
* *
1071848 TTGCC-CTATTTTCTTTAAAATAAAAGTTCATCCC
126 TT-CCACCATTTT-TTT-AAATCAAAGTTCATCCC
* * * * * * * *
1071882 TT-AA-AAGACAAGCATCG-ATTCTCGTAATAGTCACCATTCCTTTCAGGACTAGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAA
** * * * *
1071944 TGCATTCCCTTCATTAGGATGCAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTCTCTTTCC
65 CACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
*
1072009 ACCA-TCTTTTAAAT
130 ACCATTTTTTTAAAT
1072023 AAGGCAGACA
Statistics
Matches: 6014, Mismatches: 1899, Indels: 1144
0.66 0.21 0.13
Matches are distributed among these distances:
138 2 0.00
139 51 0.01
140 38 0.01
141 2 0.00
144 3 0.00
145 80 0.01
146 15 0.00
147 76 0.01
148 70 0.01
149 57 0.01
150 4 0.00
151 6 0.00
152 15 0.00
153 54 0.01
154 65 0.01
155 109 0.02
156 123 0.02
157 576 0.10
158 1796 0.30
159 2392 0.40
160 334 0.06
161 27 0.00
162 19 0.00
163 91 0.02
164 8 0.00
165 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
TTAAATAAGACAAACATGAATTCTCATAATAATCTCCATTCTTTTCTGGATTAGGAACCATAAAC
ACATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCA
CCATTTTTTTAAATCAAAGTTCATCCC
Found at i:1064271 original size:476 final size:476
Alignment explanation
Indices: 1063382--1077264 Score: 5305
Period size: 475 Copynumber: 29.3 Consensus size: 476
1063372 TCATCAACTT
* * * * *
1063382 TTAAATAAGACAAACATGAATACTCACACTATTCCCTATTCTTTTCACGATTAGGCACCAAAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * *
1063447 TTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTTTTAAGAAAGGCTTTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* *
1063512 CAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGACCCAAACAAGGATTCTAGTGA-TAATCTT
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGT-ATTAATCTT
* * *
1063576 TATTCATTTTGTGATT-CGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATGTTGATGAT
195 CATTCATTTTGTGATTAC-GCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * * * *
1063640 GTTT-TTTTACACGGAAATCTTTTCTTTTCCTTATTTTTCTTAATATCAAAGTTCATCCCTTAAA
259 -TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
1063704 TAAGACAAACATCAATTCTCATAATAGTCTCCATTCTTTTCTGGATTGGGAACCAAAAACACATT
323 TAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATT
* *
1063769 CCCTTCATCT-GGATACAAGACATTGATGCTTTGGTGTTACAAGAAAAGCTTTTCTTTCCACCAT
388 CCCTTCAT-TAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGT
* *
1063833 TTTTGATAGAATCAAAGCTTGCCTT
452 TTTTGATAGAATCAAAGTTTGCCTC
* * * * * *
1063858 TTAAATAAGACAAACATAAATAGTCAGACTAATCCCCATACTTTTTAGGATTAGGCATCATAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* ** * *
1063923 ATAGTCTTCTCATTAGGATACGCGATATTGATATTTTGGTTTCACAAGAAATGCTTTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * * **
1063988 CAATTTTTGTAAAGTTTAAGTTCGAGCCTCAAATGAGCTAAACAAGGATTCTAACATTAATCTTC
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTTC
* * * *
1064053 ATTCATTTTGTGATTACACACTACAAACACATTCTCGTCATTAGGATAAATGATATTGATGATTT
196 ATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * * ** * * *
1064118 TCTTTGGCGTGAAAATCTTTTCTATGCTTTATTTTACTTAAAATCAAAGTTCAACCTTTAAATAA
261 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * * * *
1064183 GACAAGCATCGATTCTCATAACAGTCACTATTCTTTTCAGGATTGGGAGCCTAAAATAGATTCCC
326 GACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCC
* *
1064248 TTCATTAGGATACAAGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCTCCGTTTTT
391 TTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* *
1064313 GATAGAGTCAAAGTTTGTCTC
456 GATAGAATCAAAGTTTGCCTC
* * * * *
1064334 TTAAATAAGACAAACATGAATACTCATAGTAATCCCCATCCTTCT-ATGCATTAGGTACCATAAA
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA-GGATTAGGCACCATAAA
* * * * *
1064398 CATACTTTTCCCACTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCT
65 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCC-
* * * * * *
1064462 ACCAATTTTTGTAAAGTTTAAGTTCGTGCCTTAAATGAGACAAACATA-GATTCCAGTAATGATC
129 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTATTAATC
* * *
1064526 TTCTTTCATTTTGTGATTA-GACACTATAAGCACATTCTCCTAATTAGGATAAATGATATTGTTG
193 TTCATTCATTTTGTGATTACG-CACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATG
* *
1064590 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCAT-CCTATA
257 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT-TA
* ** * * * * *
1064654 AA-AAGACAAGTATTGATTCTCGTAATAATCTCCATTCCTTTCAAGATTGGGAACCAAAAACACA
321 AATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACA
* * * *
1064718 -----TTC----GGATACAAGATATTGAT-CTTTGGCGTCGCAAGAAAAGCTTTTCTTTTCACCG
386 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCG
*
1064773 TTTTTGATAGAATCAAAGTTTATCC-C
451 TTTTTGATAGAATCAAAGTTT-GCCTC
* * * *** * * *
1064799 TCAAATAAGACAAACATGAATACACAAACGCTTCCCTATTCTTTTCATGATTAGGCACCATACAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * *
1064864 TTATTCTTCTCATTAGGATACACGATATTGCTGCTTTGGTTTCTTAAGAAGGGC-TTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * * *
1064928 CAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGTATTCTAGTAGTAATCTTC
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTTC
* * *
1064993 AATCATTTTGTGATT-CGGCACTATAAGCACATTCTTCTCGTTAGGATAAATGATATTGATGATT
196 ATTCATTTTGTGATTAC-GCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
*
1065057 TTCTTTTGCATGGAAATCTTTTCTTTGCACTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
260 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * *
1065122 AGACACGCATCAATTCTCATAACAATCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
325 AGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCC
* * *
1065187 CTTCTTTAGGATACACGACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT
390 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT
*
1065252 TGATAGAATCAAAGTTTCCCTC
455 TGATAGAATCAAAGTTTGCCTC
* * * *
1065274 TTAAATAAGATAAACATGAATAGTCAGACTAATCCCCATTCCTTTT-GGGATTAGGCACCATAAA
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAA
** * * * *
1065338 TGTAGTTTTCTCATAAGGATGCACGATATTGATG---TGGTTT-TGCTAGAAAGGCTTTCTTT-C
65 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGGCTTT-TTTCC
** * * * * *
1065398 CACCAATTTTTGTAAACACTAAGTTCATGCCTCAAATGAGGCAAACATGGATTCTAATATTGATC
128 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC
* * **
1065463 TTCATTCATTTTGTGATTAGGCACTATGAA-CACAATCTCCTCATTAGGATAAACAATATTGATG
193 TTCATTCATTTTGTGATTACGCACTAT-AAGCACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * *
1065527 ATTTTCTTTTGCATGGAAATATTTTCTTTTGCCGTGTTTTCCTTAAAGTCAAAGTTCATCCTTTA
257 ATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * * *
1065592 AATATGACAAGCATCAATTCTCATAATATTCTCCATTATTTTTAGGATTAGGAACCAAAAACACA
321 AATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACA
* * ** *
1065657 TTTCCTTCCTTAGGATACAAGACATTGATGCTTTGGTGTCACGAGAAAAGCTTTTCTTTCCACCG
386 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCG
*
1065722 TTTTT-ATTAGAATCAAAGTTTGCCTT
451 TTTTTGA-TAGAATCAAAGTTTGCCTC
* ** **
1065748 TTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCACAATTAGGCACCATAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * * * * *
1065813 TTAGTCTTCTCATTAGGATACACAATATTGGTTCTTCGATTTCTTAGGAAAGGCTTTTTTCCCTC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * * * *
1065878 CAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAATAAGGATTCCATTAATAATCTTC
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTTC
*
1065943 ATTCATTTTGTGATT-CGGCACTATAAGCACAATCTCCTCATTAGGATAAATGATATTGATGATT
196 ATTCATTTTGTGATTAC-GCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
*
1066007 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTCCTTAAAATCTAAGTTCATCCCTTAAATA
260 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * *
1066071 AGACAGGCTTCAATTCTCATAACAATCCCCATTCTTTTCAGGATTGGGAACCTAAAACACATTTC
325 AGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCC
* * * * *
1066136 CTTCATCAGGATACATGACATTGATGCATTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
390 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * *
1066201 TAATAGAGTC-AAGTTTTGTCTC
455 TGATAGAATCAAAG-TTTGCCTC
* * * *
1066223 TTAAATATGATAAACATGAATACTCATAGTAATCCCCA-T-TTTT-ATGGATTAGGTACCATAAA
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA-GGATTAGGCACCATAAA
* * * *
1066285 CATAGTCTTCTCATTAGGATACATGATGTTGATACTTTGGTTTCGCAAGAAAGGC-TTTTTCCCT
65 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCC-
* *
1066349 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCAAAACATA-GATTCTAGTATTGATC
129 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTATTAATC
* * * * *
1066413 TTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAAAGATATTGATGA
193 TTCATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGA
** * *
1066478 TTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCTATTTT-TTGTAAATTCAAAGTTCATCCCTTAA
258 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAA
* * * *
1066542 A-AAGACAAGCATCGATTCTCCTAACAGTCTCCACTCTTTTCTA-GATTGGGAACTAAAAACACA
322 ATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTC-AGGATTGGGAACCAAAAACACA
** * * * *
1066605 TTCCCTTCATTAGGATACTTGACAGTGATGCTTTGGTGTCGCTAGAAAAGCTTTTATTTCCACCG
386 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCG
* * *
1066670 TTTTTGATAGAATCAAAGTTCGTCTT
451 TTTTTGATAGAATCAAAGTTTGCCTC
* * ** *
1066696 TTAAATAAGACAAACATTAATACTCATACTATTCCCCATTCTTTTCATAATTACGCACCATAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * *
1066761 TTAGACTTCTCATTAGGATACGCGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * * *
1066826 CAATTTTTGTAAACTCTAAGTTCGTACCTCAAAT-AGGCCAAAGAAGGATTCTCA-TAATAATCT
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA-GCCAAACAAGGATTCT-AGTATTAATCT
* * *
1066889 TCAATT-ATTTCGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAAAGAAATTGATGA
194 TC-ATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGA
*
1066953 TTTTCTTTTG--TGTGAAAGTCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATCCCTTA
258 TTTTCTTTTGCATG-GAAA-TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * *
1067016 AATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTAGGAACCAAAAACACA
321 AATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACA
* * *
1067081 TTTCCTTCATTAGGATACAAGACTTTGATGCTTTGGTGTAGCAAGAAAAGCTTTTCTTTCCACCG
386 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCG
*
1067146 TTTTT-AGTAGAATCAAAGTTTGTCTC
451 TTTTTGA-TAGAATCAAAGTTTGCCTC
* * * *
1067172 TTAAATAAGTCAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * *
1067237 ATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTAGTTT-TGCTAGAAAGGC-TTTTTCCCT
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGGCTTTTTTCCC-
* * * * * *
1067300 ACCAATTTTTGTGACGTCTAATTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCA
129 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC-
* * * *
1067365 TT-ATTCATTTTGTGATTAGGTAGTATAAGCACATTCTCCTCATTATGATAAATGATATTGATGA
193 TTCATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGA
*
1067429 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAGTTCATCCCTTAAA
258 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
1067494 TGAGACAAGCATCAATTCTCATAACAGTC-CCTATTCTTTTCAAGG-TTAGGAATCAAAAACACA
323 TAAGACAAGCATCAATTCTCATAACAGTCTCC-ATTCTTTTC-AGGATTGGGAACCAAAAACACA
* * * * *
1067557 TTCCCTTCATTAGGATACACGACATTGATGTTTTGGTGTAGCAAGAAAAGCTTTTCTTTGCACCA
386 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCG
* *** *
1067622 TTTTTGATACAATCAAAGTTCAACTT
451 TTTTTGATAGAATCAAAGTTTGCCTC
* * * * * *
1067648 TTAAATAAGACAAATATGAATACTCATACTATTCCCCATTCTTTTCAAGATTGGGAACCAAAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * *
1067713 ATATTCCCTT-T-ATTAGGATACACGAAATTGATGCTTTAGTGTT-GCAAGAAAAGCTTTTATTT
66 ATAGT--CTTCTCATTAGGATACACGATATTGATGCTTTGGT-TTCTCAAGAAAGGCTTTT-TTC
* * * * * * * *
1067775 CCAAC-GTTTTTGATAGAA-TCAAAGTT--TTCCTCTTAAATAAGACAAACATGAATAGTC-A-T
127 CCACCAATTTTTG-TA-AAGTCTAAGTTCGTGCCTC--AAATGAGCCAAACAAGGAT--TCTAGT
* ** * * * * * ** * ** **
1067834 ACTAATCCCCATTC-TTTTCGAGATTAGGCACCACAAACTTAGTT-TTCTC-TTAAGGATGCACA
186 ATTAATCTTCATTCATTTT-GTGATTACGCACTATAAGCACA-TTCTCCTCATT-AGGATAAATG
* ** * * ** * ** * *
1067896 ATATTGATGCTTTGGTTTTGC-TAGAAAGGC-TTTCTTCACACCAATTTTTGTT-AAGTCTAAGT
248 ATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGT
** * * ** * ** * ** * *
1067958 TTGTGCCTCAAATGGGACAAACATGGATTCTAAT-ATTGATCTTCATTCATTTT--GTGATTAGG
311 TCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAG-TCTCCATTC-TTTTCAG-GATTGGG
* * ** * * ** * *
1068020 CACTATGAACACATTCTCC-TCATTAGGATA-AATGATATTGATGATTTTCTTTTGC------CG
373 AACCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAG
* * ** *
1068077 -TATT-TTT----C----TT-A-A-ATTCAAAGTTCACCCC
436 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTC
* * * * * * * * * * * *
1068105 TTAAATATGGCAAGCATTG-ATTCTCATAATAGTCTCCATT-TTTTCAAGATTGGGAAACAAAAA
1 TTAAATAAGACAAACA-TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * * * * *
1068168 CACATTC-CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
65 CATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TTCC
* * * * * * * * * * *
1068232 CACC-GTTTTCGATAGAA-TCAAAGTTTGT-CTCTTAAATTAGACAAACATGAATAC-A-CA-TA
128 CACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTCTAGTATTA
* ** * * ** * * **
1068291 CTCTTCCCGATTC-TTTTCACGATTA-GACACCATAAACTTAGTCGT-CTCATTAGGATACACAA
190 ATCTT--C-ATTCATTTT-GTGATTACG-CACTATAAGCACATTC-TCCTCATTAGGATAAATGA
* ** * ** ***
1068353 TATTG--GTTCTTTGATTT-CTTAGGAAAGGTTTT-TTT-CCC-----T-C-T-AAAT-TTTGTT
249 TATTGATGAT-TTTCTTTTGCAT-GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
** * * * * * *
1068404 TGTGCCTCAAATAAGACAA--ATAAGGATTC-CAGTAATAATCTTCATTCATTTT--GTGATAT-
312 CATCCCTTAAATAAGACAAGCATCA--ATTCTCA-TAACAGTCTCCATTC-TTTTCAG-GAT-TG
* * * * * * * * * * * *
1068463 GGCACTATAAGCACGTTCTCTTCATTAGGATTA-ATGATATTGATGACTTT-TTTTTGCATGGAA
371 GGAACCAAAAACACATTCCCTTCATTAGGA-TACAAGACATTGATG-CTTTGGTGTTGCAAGAAA
* * ** *
1068526 ATCTTTTCTTTGC-CC-TATTTTCCTTAAAATCAAAGTTCAT-CC-C
434 AGCTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCTC
* * * * * * * * *
1068569 TTAAAAAAGACAAACATCG-ATTCTTATAATAGTCTCCATTCTTTTCAGGATT-GAGAAACAAAA
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAG-GCACCATAA
* * * * * * * * * * *
1068632 ACACATTC-CCATCATTAGGATACAAGACATAGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTT
64 ACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TTC
* * * * * * *
1068696 CCACC-ATTTTCGATAGAA-TCAAAGTT--TGCCTTTTTAAATAAGACAAACATGAATAGTC-AG
127 CCACCAATTTTTG-TA-AAGTCTAAGTTCGTGCC---TCAAATGAGCCAAACAAGGAT--TCTAG
* ** * * * * * * * * * *
1068756 -ACTAATCCCCATTCTTTTTAG-GATTAGGCACCATAAACATAGTCTTCTCATCAGGATACACGA
185 TATTAATCTTCATTCATTTT-GTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGA
** ** * * * * * *
1068819 TATTGATG-TTTTGGTTT-CACAAGAAAGGC-ATT-TTTCCCACCAATTT--TT----GCAAAG-
249 TATTGATGATTTTCTTTTGCA-TGGAAA-TCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGT
* ** ** *** * * * * * *
1068873 ---T--C-TAAATGAGGTAAATAGGGATTCT-AGTAATAATCTTCATT-TATTT-TGTGCTTCGG
311 TCATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAGTCTCCATTCT-TTTCAG-GATTGGG
* * * * * * ** * * *
1068929 CACCATAAGCACATTCTCC-TCATTAGGATTA-ATGATATTGATGATTTTCTTTTGCATGAAAAT
373 AACCAAAAACACATTC-CCTTCATTAGGA-TACAAGACATTGATGCTTTGGTGTTGCAAGAAAAG
** ** * ***
1068992 CTTTTCTTT-GTCC-TATTTTCCTTAAAATCAAAGTTCATCTC
436 CTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTTTGCCTC
* * * * * * * * * * *
1069033 TTTAAA-AAGACAAGCATCGACT-CTCGTAATAGTCTCCACTCATTTCAAGATTAGGAACCAAAA
1 -TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA
* * * * ** * * * * * * *
1069096 ACACATTC-CCTTCATTAGTATACTTGACAGTGATGCTTTGGTGTCACTAGAAAAGCTTTTCTTT
64 ACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TTC
* * * * * * * *
1069160 CAACC-GTTTTTGATAGAA-TCAAAGTTCGT--CTCATAAATAAGACAAACATGAATACTCA-TA
127 CCACCAATTTTTG-TA-AAGTCTAAGTTCGTGCCTC--AAATGAGCCAAACAAGGATTCT-AGTA
* * ** * * * * ** ** * * * *
1069220 CTATTCCCCATTC-TTTTCATGATTAGGCACCATAAACTTAGACTTCTAATTAGGATACACGATA
187 TTAATCTTCATTCATTTT-GTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATA
** * * * * * *
1069284 TTG--G-TCTTTGGTTT-CTTAAGAAAGGCTTTT-TTCT-CACCAATTTT--TGTAAAGTCTAAG
251 TTGATGAT-TTTCTTTTGCAT-GGAAA-TCTTTTCTT-TGC-CCTATTTTCCT-TAAAATCAAAG
* * * * * * * * * * *
1069341 TTCGTTCCTCAAATAGGCCAA--ATAAGGATTCTCGTAATAATCTTCATT-TATTTC-GTGATTA
310 TTCATCCCTTAAATAAGACAAGCATCA--ATTCTCATAACAGTCTCCATTCT-TTTCAG-GATTG
* * * * * * * ** ** * *** *
1069402 CGCACTATAAACACATTTTCC-TCATTAGGATAAAAGATC-CTGATTATTTTCTTTTGTGTGGAA
371 GGAACCAAAAACACA-TTCCCTTCATTAGGATACAAGA-CATTGATGCTTTGGTGTTGCAAGAAA
* * *** * * *
1069465 ATCTTTTTTTTTTTGGCCCTATTTT-ACTTAAAATCAAAG-TT-CATTCC
434 AGC--TTTTCTTTCCACCGT-TTTTGA--TAGAATCAAAGTTTGC-CT-C
* * * * * *
1069512 TTAAATAAGACAAGCTTCG-ATTCTCATAATAGTCCCCATTCTTTTCAGGATTAGGAACC-TAAA
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AA
* * * * * * * * * * *
1069575 ACACATTC-CCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTT
64 ACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TTC
* * * * * * * * * *
1069639 CCACC-ATTTTTGATAGAGTCAAATTTTGT-CTCTTAAAT-ATGACAAACACGAATACTCA-TAG
127 CCACCAATTTTTG-TAAAGTCTAAGTTCGTGC-CTCAAATGA-GCCAAACAAGGATTCT-AGTAT
* * * * ** * ** * * *
1069700 TAATC-CCTATTC-TTTTATGGATTATGTACTATAAATATAGCCTTCTCATTAGGATACACGATA
188 TAATCTTC-ATTCATTTTGT-GATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATA
* ** * ** ** * * *
1069763 TTGATGCTTTGGTTTTGCA-AGAAGGCTTTT-TTCCCTACCAATTTT--TGTAAAGTCTAAGTTC
251 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC--CCTATTTTCCT-TAAAATCAAAGTTC
* * * * * ** ** * * * * *
1069824 GTGCCTCAAATGAGACAAACATGGATTCTGGTAA-TGATCTTCTTTCATTTT--GTGATTAGGCA
313 ATCCCTTAAATAAGACAAGCATCAATTCTCATAACAG-TCTCCATTC-TTTTCAG-GATTGGGAA
* * ** * * * ** * * *
1069886 CTATAAGTACATTCTCC-TCATTAAGATA-AATGATATTGATGATTTTATTTTGCAGGAAAATCT
375 CCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGCT
* **
1069949 TTTCTTTGC-CC-TATTTTCCTTA-AACTCAAAGTTCAT-CC-C
438 TTTCTTTCCACCGT-TTTT-GATAGAA-TCAAAGTT--TGCCTC
* * * * * ** * * * *
1069988 TTAAACAAGACAAGCATCG-ATTCTCATAATAGTGTCCATTCTTTTCAAGATTGGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * * * *
1070052 CACATTC-CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTT
65 CATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGT-TTCTCAAGAAAGGCTTTT-TTC
* * * * * * * * * *
1070115 CCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTTTTAAATAAGACAAACATGAATAC-A-CATT
127 CCACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTCTAGTATT
* * * ** * * ** * * * ** **
1070175 -CTCATCCCGGTTC-TTTTCACGATTAGGCAAC-ATAAACTTAGTATTCAGATTAGGA-AACCGG
189 AATC-T-TC-ATTCATTTT-GTGATTACGC-ACTATAAGCACATTCTCCTCATTAGGATAA-ATG
* * ** * * *
1070236 ATATTGGTGCTTTGGATTCTT--A-AGAAAGAC-TTT-TTT-CCCTCAAATTTT--TGTAAAGTC
248 ATATTGATGATTT-TCTT-TTGCATGGAAA-TCTTTTCTTTGCCCT---ATTTTCCT-TAAAATC
* * * * * *** * * * *
1070293 TAAGTTCATGCCTCAAATGAGACAAACAAGGATT-TTAGTAATAATCTTCATTCATTTT--GTGA
306 AAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAGTCTCCATTC-TTTTCAG-GA
* * * * * * * ** * *
1070355 TTCGGCACTATAAGA-ACATTCTCC-TCATTAGGATA-AATGATATCGATGATTTTCTTTTGCAT
368 TTGGGAACCA-AAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAA
* * * ** *
1070417 GGAAATCTTTGT-TTTGC-CC-TATTTTCCTTAAAATCAAAGTTCAT-CC-C
430 GAAAAGCTTT-TCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCTC
* ** * * * ** * * * *
1070464 TTAAAAAAGACACGCATCG-ATTCTCGTAAT-AGGCCCATTCCTTTCAGGATTGGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * * * * *
1070527 CATA---TTC-CCTTAGGATACAAGACATTGATTCTTTAGTGTCGCAAGAAAAG-TTTTCTTTCC
65 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TTCCC
* * ** * * * * * * * * *
1070587 ACC-GTTTTTGATACAA-TCAAAGTTC-AACTTTTAAATAAGACAAATATGAATACTCA-TACTA
129 ACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTCT-AGTATTA
* ** * * * * * ** ** * * *
1070648 TTCCCCATTCTTTTTATGATTAGGCACCATAAACTTAGTT-TTATAATTAGGGTACATGATATTG
190 ATCTTCATTCATTTTGTGATTACGCACTATAAGCACA-TTCTCCTCATTAGGATAAATGATATTG
* * * * * *
1070712 GTGCTTTGT-TTCTT--A-AGAAAGGC-TTT-TTTGCCACCAATTTT--TGTAAACTCTAAA-TT
254 ATGATTT-TCTT-TTGCATGGAAA-TCTTTTCTTTG-C-CCTATTTTCCT-TAAAATC-AAAGTT
* * * * * * *** * * * * * *
1070768 CGTACCTCAAATGAGGCAATCAAGTATTCT-AGTAATAATCTTCTTTCATTTT--GTGATTCGGC
312 CATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAGTCTCCATTC-TTTTCAG-GATTGGGA
* * * * * * * ** * * * *
1070830 ACTATAAGCACATTCTCATT-GTTAGGATA-AATGATATTGATGATTTTATTTTGCATGGAAATC
374 ACCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGC
* ** *
1070893 TTTTC-TT-CGCCGTATTTTCCTTAAAATCAAAGTTAAT-CCTAC
437 TTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCT-C
* * * * * * ** * *
1070935 --AAA-AAGACAAGCATCAATTCTCATAAC-AGTCTCCATTCTTTTTAGGATTTTGAACCTAAAA
1 TTAAATAAGACAAACATGAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACC-ATAA
* * * * * *
1070996 GACAT--TC-CCTTCATTGGGATACATGACATTGATGCTTTGGTGTT-GCAAGAAACGCTTTTCT
64 -ACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGT-TTCTCAAGAAAGGCTTTT-T
* * ** * * * * * *
1071057 TTCCACC-ATTTTTGATAAAGTCAAAGTTTAT-CTCTTAAATAAGACAAACATGAATACTTA-TA
125 TCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTC-TAGTA
* ** * * * * * * * * * *
1071119 GTAATCCCCATTC-TCTCATG-GATTAGGTACCATAAACATAGTCTTCTCATTAGGATACACGAT
187 TTAATCTTCATTCAT-T-TTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGAT
* ** * * * * * * * *
1071182 ATTGATGCTTTGGTTTCGCA-AGAAAGGC-TTT-TTCGCTACCAATTTAT--ATAAACTCTAAGC
250 ATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC--CCTATTT-TCCTTAAAATCAAAG-
* * * * * * ** * * ** * *
1071242 TT-GTGCCTCAAATGAGACAAACTTGGATTCT-AGTAA-TGATCTTCGGTCATTTT-ATGATT-A
310 TTCATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAG-TCTCCATTC-TTTTCAGGATTGG
* * * * * * ** * *
1071302 GACACTATAAGCACATTCTCC-TCAGTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAAA
372 GA-ACCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAA
* ** ** *
1071365 ATCTTTT-TTTGCC-CTATTTTTCTTAAAATCAAAGTTCAT-CC-C
434 AGCTTTTCTTT-CCACCGTTTTTGATAGAATCAAAGTT--TGCCTC
* * * * * * ** * * * *
1071407 TTATATAAAACAAGCATCG-ATTCTCGTAATAGGCCCCATTCCTTTCAGGATTGGGAACCAAAAA
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * * * * *
1071471 CACATTC-CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
65 CATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TTCC
* * * * * * * * * * * *
1071535 CACC-GTTTTTGATACAA-TCAAAGGTCAT-CTTTTAAATAAGACAAACATGAATACTCA-TACT
128 CACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTCT-AGTATT
* ** * * * ** * * *
1071596 ATTCCCCATTC-TTTTCATGATTAGGCACCATAAGCTTAGTT-TTCTCATTAGGATACACGATAT
189 AATCTTCATTCATTTT-GTGATTACGCACTATAAGCACA-TTCTCCTCATTAGGATAAATGATAT
* * *** * * * * * * *
1071659 TGGTG-CTTAGGTTT-CTTGAGAAAGGCATTTC-TTCCACCAATTTT--TGTAAAGTCAATGTTC
252 TGATGATTTTCTTTTGCATG-GAAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTC
* * * * * *** * ** *
1071719 GTGCCTCAAATGAGCCATA-CAAGTATTCT-AGTATA-A-TCTTC-TT-TTATTTTGTGATTCGG
313 ATCCCTTAAATAAGACA-AGCATCAATTCTCA-TA-ACAGTCTCCATTCTT-TTCAG-GATTGGG
* ** * ** ** * * ** * * *
1071778 TATTATAAGTACATTCTCC-AAATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAAAAT
373 AACCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAG
* ** * *
1071841 CTTTTCTTTGC-CC-TATTTTCTTTAAAATAAAAGTTCAT-CC-C
436 CTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCTC
* * * * * * * * *
1071882 TT-AA-AAGACAAGCATCG-ATTCTCGTAATAGTCACCATTCCTTTCAGGACTAGGAACCA-AAA
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * *
1071943 -AT-G-CATTCCCTTCATTAGGATGCAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTCTCT
65 CATAGTC-TT--C-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTT-T-T
* ** * * *
1072005 TT-CCACC-ATCTTT-TAAA---TAA----G-G---C--A-GA--C-ATTAA-TACTC-A-TACT
124 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
* ** * * * * ** * * * *
1072047 ATTCCCCATTC-TTTTCATGATTAGGCACCATAAACTTAGTT-TTCTCAATAGGATACATAATAT
189 AATCTTCATTCATTTT-GTGATTACGCACTATAAGCACA-TTCTCCTCATTAGGATAAATGATAT
* * ** * * * * ** * * *
1072110 TGGTGGTTTGGTTTCT-TAAGAAAAGCTTTT-TTCCCACCAATTTT--TGTAAAATCTAAGTTCG
252 TGATGATTTTCTTT-TGCATGGAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCA
* * * * *** * * * * * * *
1072171 TACCTCAAATTAAAGCCAAACAAGTATT-TTAGAAATAATCTTCAATCATTTT--GTGATTCGG-
314 TCCCTTAAA-T-AAGACAAGCATCAATTCTCA-TAACAGTCTCCATTC-TTTTCAG-GATTGGGA
* * * * * * *
1072232 --C--AATCATATTCTCC-TCATTAGGATA-AATGATATTGATGATTTTGTTTTGCATA-AAAAT
374 ACCAAAAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCA-AGAAAAG
* ** *
1072290 CTTTTCTTTGC-CC-TATTTTCTTTAAAATCAAAGTTCAT-CCT-
436 CTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCTC
** * * * * * * * * * *
1072331 TTAAATAAGACACGCATCAATTCTCATAATAGTCCCCATTTTTTTCAAGATTGGGAACGAAAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * *
1072396 ATATTCCCTT-T-ATTAGGATACATGAAATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTT
66 ATAGT--CTTCTCATTAGGATACACGATATTGATGCTTTGGT-TTCTCAAGAAAGGCTTTT-TTC
* * * * *
1072458 CCACC-ATTTTTGATAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC-A-T
127 CCACCAATTTTTG-TA-AAGTCTAAGTTCGTGCCTC--AAATGAGCCAAACAAGGAT--TCTAGT
* ** * * * * * * * * **
1072517 ACTAATCCCCATTCTTTTTGAGATTAGGCACTATAAACATAGTCTTCTCATAAGGATGCATGATA
186 ATTAATCTTCATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATA
* ** * * ** * * *
1072582 TTGATGCTTTGGTTTTGC-TAGAAAGGCTTTTC-TCCCACCAATTTT--TGAAAAGTCTAAGTTC
251 TTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAA-TCAAAGTTC
* * * * * * ** ** * ** *
1072643 TTGCCTCAAATGAGCCAAACATGGATTC-CAGT-ATTGATCTTCATTCCTTTT--GTGATAAGGC
313 ATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAG-TCTCCATT-CTTTTCAG-GATTGGGA
* ** * * * * ** * *** * *
1072704 ACTATGAACAAATT-CTTCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGTGTGGAAATC
374 ACCAAAAACACATTCCCT-TCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGC
* ** * *** *
1072767 TTTTCTTT--ACCCTATTTTCCTTAAAATCAAAGTTCATCAC
437 TTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTTTGCCTC
* * * ** * ** ** *
1072807 TTAAA-AAGATAAGCATTG-ATTCTGTTAAC-AGTGTCCATTCTTTTCAGGATTTTGAACC-TAA
1 TTAAATAAGACAAACA-TGAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-A
* * ** * * *
1072868 AACACATTCCTT-TCATTAGGATACTTGACATTGTTGCTTT-GTTGT-TGCAAGAAAAGCTTTTC
63 AACATAGT-CTTCTCATTAGGATACACGATATTGATGCTTTGGTT-TCT-CAAGAAAGGCTTTT-
* ** * * * * * *
1072930 TT-TCTGCTATTTTTGATAGAA-TCAAAGTT--TGCCTTTTAAATAAGACAAA-AATGAATAGTC
124 TTCCCACCAATTTTTG-TA-AAGTCTAAGTTCGTGCC--TCAAATGAGCCAAACAA-GGAT--TC
* * * * * * * * * * * * **
1072990 -A-AACTAATC-CCTATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATTTGGATACG
182 TAGTATTAATCTTC-ATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAA
* * ** * * * * *
1073052 CGATATTGAAG-TTTTGGC-TTAACA-AGAAAGGC-ATT-TTT-CCAACTAATTTT--TGCAAAG
246 TGATATTGATGATTTT--CTTTTGCATGGAAA-TCTTTTCTTTGCC--CT-ATTTTCCT-TAAAA
* * ** * * * * ** * *
1073109 TCTATGTTCATGTCTCAAATGAGGCAAACATGGATTCT-AGTAACAATC-CTCATT-TATTT-TG
304 TCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAGTCTC-CATTCT-TTTCAG
* * * * * * ** *
1073170 TGATTCGGCACTATAAGCACATTCACC-TCATTAGGATA-AATG--ATCTGATGATTTTCTTTTG
366 -GATTGGGAACCAAAAACACATTC-CCTTCATTAGGATACAA-GACAT-TGATGCTTTGGTGTTG
* ** * ** *
1073231 CATGAAATTCTTTTCTTTGC-CC-TATTTTCCTTAAAATCAAAGTTCAT-CCT-
427 CAAGAAAAGCTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCTC
*** * * * * *
1073281 TTAAATAA-AGCGTGCATCAATTCTCATAAC-AGTCCCCATTCTTTTCAGGATTGGGAACCA-AC
1 TTAAATAAGA-CAAACATGAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATA-
* * * * * * *
1073343 AACACA-T-TCCGTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
63 AACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTT-TT
* ** * * * * * * * * * * *
1073406 TCCACCGTTTTTTATAGAA-TCAAAATTTGT-CTCTTAAATAAGACAAACATGAATAC-ACATAC
126 CCCACCAATTTTTGTA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTCTA-GTA-
** * ** * * * ** * * * **
1073468 TCT-A-CCCCAATC-TTTTCACGATTAGGCA-TCACAAACTTAGTCTTCTTATTAGGATACGTGA
187 T-TAATCTTCATTCATTTT-GTGATTACGCACT-ATAAGCACATTCTCCTCATTAGGATAAATGA
* ** ** * * * * *** * *
1073529 TATTGGTGCCTTGGTTTCT-TAAGAAAAGCTTTTC-GCCCACCAATTTT--TGTAAAGTC--AGT
249 TATTGATGATTTTCTTT-TGCATGGAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGT
** * * * * * *** ** * **
1073588 TTGTGCCTCAAATGAGCCAAACAAGGATTCT-AGT-ATTGATCTTCATTCATTTT--GTGATTAC
311 TCATCCCTTAAATAAGACAAGCATCAATTCTCA-TAACAG-TCTCCATTC-TTTTCAG-GATTGG
* * * * * * ** ** * *
1073649 GCACTATAAACACATT-CTTCTCTTTAGGATA-AATGATATTGATAATTTTCTTTTGCCTAG-AA
372 GAACCAAAAACACATTCCCT-TCATTAGGATACAA-GACATTGATGCTTTGGTGTTG-CAAGAAA
* * ** *
1073711 ACCTTTTCTTTGC-CC-TATTTTCTTTAAAATCAAAGTTCAT-CC-C
434 AGCTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTT--TGCCTC
* * * * * * *
1073754 TTAAATAAGACAAGCATCG-ATTCTCATAATAGTCCCCATTCTGTTTTTGATAGAATCAAAGTGC
1 TTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTC---TTTT--CAGGAT--TAG-GC
** ** * * * * *
1073818 ATCTCGTACTATTTCCCATTCTTTTCACAATTTAGG---CACTATAAACTTAGTCTTCTCATTAG
57 A-C-C--A-TA---AACATAGTCTTCTC-A-TTAGGATACACGAT--A-TT-G-ATGCT--TT-G
* * * ***
1073880 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
104 GTTTCTC-A-A-----G-AAAGG--------------CTTTTTTCCCACCAATTTTTGTAAAGTC
* * * * * *
1073945 TAAGTTCATGCCTTAAATG-GTCCAAACAATGATTCCAGTAGTGA---TC-TTCA---TGTGATT
147 TAAGTTCGTGCCTCAAATGAG-CCAAACAAGGATTCTAGTATTAATCTTCATTCATTTTGTGATT
* * * * * **
1074002 ACACACTATAAACACATTCTTCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCCGGGGAAA
211 ACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * * * **
1074067 TCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTTATCCCCTAAA-AGGACAAGCATTGATTC
276 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTC
* * ** * * * **
1074131 TCGTAATAGTCTCCATTCTTTTCAACATTGGGAACCAAAAAGAAATTCCCGTCATTAGGATACTT
341 TCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAA
* * * * * ** ** * *
1074196 GACATTGAAGCTTTGGTGTTGCTAGAAAAGATTTTTTTTCTACTATTTTCAATACAAACAAAGTT
406 GACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
***
1074261 CATCTC
471 TGCCTC
* * * * *
1074267 TTAAATAAGGCAAACGTGAATACTCATACTATTCCCCATTCTTTTCACGATTAGGCACCCTAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * *
1074332 TTAGTCTTCTCATTACGATACATGATATTGGTGCTTTGGTTTATTAAGAAAGGC-TTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * *
1074396 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTTTAGTATTGATATTC
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTTC
* * **
1074461 ATTCA-TTT-TG--T----ACTATAAACACATTCTCCTCATTAGGATAAATGACATTGACAATTT
196 ATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTT
***
1074518 TCTTTTGTGGGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-AA
261 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
** * *
1074582 GACAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAAATT-CC
326 GACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCC
* ** ** * * **
1074646 TGTCGTTAGGATACTTGACATTGATGCTTTGGTGTCACTAGAAAAGCTTTTCTTTCTACTATTTT
391 T-TCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* ***
1074711 TAATAGAATCAAAGTTCATCTC
455 TGATAGAATCAAAGTTTGCCTC
* * * * *
1074733 TTAAATAAGACAAACATAAATACTCATACTATTCCCTATTCTTTTCACGATTAGGCACCCTAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * *
1074798 TTAGTCTTCTCACTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * *
1074863 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATT-TTGTTATTGATCTT
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAG-TATTAATCTT
*
1074927 CATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
195 CATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
* *
1074992 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAACA
260 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * * * *
1075057 TGACAAGCATCGATTAC-CGTAATAGTCTCCATTCATTTCTGGATTGGGAACCAAAAGCACGTTC
325 AGACAAGCATCAATT-CTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTC
* * ** * **
1075121 CCTTAATTAGAATACAAGACATTGATGCTTTGGTGCCGCAAGGAAAGCTTTTCTTTCCA-TTTTT
389 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTT
*
1075185 TTGATAGAATCAAAGTTTGTCTC
454 TTGATAGAATCAAAGTTTGCCTC
* * * *** ** *
1075208 TTAAATGAGACAAACATAAATACACATACCCTTCCCCATTCTTTTCACAATTAGGCACCATAAGC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * * * *
1075273 TTTGTCTCCTCATTAAGATACATGATATTGGTTCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
* * ** * * **
1075338 TAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGTTAAAAAAGTATTCTAGTAAAAATCTTC
131 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTTC
* *
1075403 ATTCATTTTGTGATT-CGACACTACAAGCACATTGTCCTCATTAGGATAAATGATATTGATGATT
196 ATTCATTTTGTGATTACG-CACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * *
1075467 TTCTTTTGCGTGGAAATCTTTTCTTTGCCCTGTTTTACTTAAAATCAAAGTTCATCCCGTAAATA
260 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
** * * * * **
1075532 ATTCAAGCATCGATTCTCGTAATAGTTTCCATTCTTTTCAGGATTTTGAA-CATAAAACACATTC
325 AGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCA-AAAACACATTC
* * *
1075596 CCTTCATTAGGATACAATG-CATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCCTTCCACCGTT
389 CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTT
* * **
1075660 TTCGATAAAATCAAAGTTTATCTC
453 TTTGATAGAATCAAAGTTTGCCTC
* * * * * *
1075684 TTAAA-AATGACAAACATTAATACTCATACTATTCCCTATTCTTTTCACGATTAAGCTCCATAAA
1 TTAAATAA-GACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * * * *
1075748 CGTTG-CGTTCTCATTAAGATGCACAATATTGGTTCTTTGGTTTCTTAAGAAAGGC-TTTTTCCC
65 CATAGTC-TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCC
* * * * *
1075811 ACCAATTTTTGTAAAGTCTGAGTTCTTGCCTTAAATGTGCCAAACAAGGATTCTAGTATTGATCT
129 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCT
* *
1075876 TCGA-TCATTTTGTGATTACACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
194 TC-ATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGA
**** * * *
1075940 TTTTCTTTTGCGCAAAAATCTTTTCCTTGCCATATTTTACTTAAAATCAAAGTTCATCCCTTAAA
258 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
1076005 TAAGACAAGCATCGATTCTCATAACA-TTTCCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
323 TAAGACAAGCATCAATTCTCATAACAGTCT-CCATTCTTTTCAGGATTGGGAACCAAAAACACAT
* * *
1076069 TCCATTCAATAGGATACACGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGT
387 TCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGT
* * *
1076134 TTTTAATAGAATCGAAGTTTGTCTC
452 TTTTGATAGAATCAAAGTTTGCCTC
* * * * * *
1076159 TTAAATAAGACAAACAAGGATACACATACTTTAT-CCTATTCTTTTCATGATTAGGCACCATAAA
1 TTAAATAAGACAAACATGAATACTCATAC-TAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * *
1076223 CTTAGTCTTCTCATTAGGATACATGATATTGGTGCATTGGTTTCTTAAGAAAGGCTTTTTTCCCA
65 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCA
* * * * * * *
1076288 CCAATTTTTCTAAAATCTAAGTTCATGCCTCAAATGATCCAAACAATGATTCGAGTATTGATCTT
130 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTT
* *
1076353 CATTCATTTTGTGATTATGCTCTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
195 CATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
** * * * *
1076418 TTCTTTTGTGTGGAAATCTTTTCTTT-CCCAATTTTGCTTAAAATCAAAGTTTATCCCTTAAACA
260 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
** * *
1076482 AGACAAGCATCAATTCTTGTAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACATTCC
325 AGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCC
* * * *
1076547 CTTCATT-GGATTACAAGACA-T-AGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTACCATCGTTT
390 CTTCATTAGGA-TACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTT
*
1076609 TTGATAGAATTAAAGTTTGTCC-C
454 TTGATAGAATCAAAGTTTG-CCTC
** * * * ** *
1076632 ACAAATAAGACAAACATAAATACACAAACTCTTCCCCATTCTTTTCATGATTAGGCACCATAAAC
1 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * *
1076697 TTAGTCTTCTCATTAGGATACACGATATTGGTG-TTTCGGTTTCTTAAGAAAGGCTTTTTTCCCA
66 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTTCTCAAGAAAGGCTTTTTTCCCA
* * * * * *
1076761 CCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACCAGGATTGTAGTATTTATCAT
130 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTT
* * * * *
1076826 CATTCCTTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGATT
195 CATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * *
1076891 TTCTTTTGCGTGGAAAT-TTCTC-TTGTCCCTATTTTCTTTAAAATCAAAGATCATCCCTTCAAT
260 TTCTTTTGCATGGAAATCTTTTCTTTG-CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * * *
1076954 AAGACAAGCATCGATTCTCATAATACTCCCCATTCTTTACCGGATTGGGAACCAAAAACACATTC
324 AAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTC
***
1077019 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGCCACAAGAAAAGCTTTTCTTTCCACCGTTT
389 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTT
* *** *
1077084 TTGATACAATCAAAGTTCATCTT
454 TTGATAGAATCAAAGTTTGCCTC
* * * * * **
1077107 TTAAATAAGACAAACTTGAATAAAT-ATAC-ACTTCCCCATTCCTTTCACGATTTAGGCACCGCA
1 TTAAATAAGACAAACATGAAT-ACTCATACTA-ATCCCCATTCTTTTCAGGA-TTAGGCACCATA
* * * * * * *
1077170 AACTTATTCTTCTCGTTAGAATACACGATATTGGTG-TTTGGTTTATTAAGAAAGGCTTTTTTCC
63 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCC
*
1077234 CACCAATTTTTGTAAAGTCTAAGTTCATGCC
128 CACCAATTTTTGTAAAGTCTAAGTTCGTGCC
1077265 ATGATGAAAA
Statistics
Matches: 11022, Mismatches: 1742, Indels: 1287
0.78 0.12 0.09
Matches are distributed among these distances:
443 2 0.00
444 2 0.00
445 85 0.01
446 13 0.00
448 1 0.00
449 91 0.01
450 5 0.00
451 200 0.02
452 20 0.00
453 34 0.00
454 26 0.00
455 17 0.00
456 171 0.02
457 49 0.00
458 7 0.00
459 2 0.00
460 4 0.00
461 4 0.00
462 23 0.00
463 100 0.01
464 459 0.04
465 330 0.03
466 448 0.04
467 149 0.01
468 42 0.00
469 206 0.02
470 127 0.01
471 101 0.01
472 132 0.01
473 1274 0.12
474 803 0.07
475 2672 0.24
476 2365 0.21
477 294 0.03
478 44 0.00
479 235 0.02
480 113 0.01
481 14 0.00
482 8 0.00
483 2 0.00
485 1 0.00
487 1 0.00
488 1 0.00
489 6 0.00
490 5 0.00
491 6 0.00
492 7 0.00
493 4 0.00
494 4 0.00
495 6 0.00
496 4 0.00
497 11 0.00
498 5 0.00
499 1 0.00
500 2 0.00
503 1 0.00
504 2 0.00
505 4 0.00
506 2 0.00
508 3 0.00
510 5 0.00
511 59 0.01
512 19 0.00
513 115 0.01
514 21 0.00
515 2 0.00
516 1 0.00
517 4 0.00
518 39 0.00
519 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCCAC
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATCTTC
ATTCATTTTGTGATTACGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTT
TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
GACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCC
TTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
GATAGAATCAAAGTTTGCCTC
Found at i:1067861 original size:635 final size:615
Alignment explanation
Indices: 1066967--1068316 Score: 1746
Period size: 635 Copynumber: 2.2 Consensus size: 615
1066957 CTTTTGTGTG
* ** * * *
1066967 AAAGTCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCG
1 AAAG-CTTTTCTTTGCACCATTTTCGATAAAATCAAAGTTCATCTCTTAAATAAGACAAACAT-G
* * * * * * *
1067032 -ATTCTCATAATAGTCTCCATTATTTTCAGGATTAGGAACCAAAAACACATTTCCTTCATTAGGA
64 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGA
** * * *
1067096 TACAAGACTTTGATGCTTTGGTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTAGTAGAATCA
129 TACAAGAAATTGATGCTTTAGTGTAGCAAGAAAAGCTTTTATTTCCAACGTTTTTAGTAGAATCA
* *
1067161 AAGTTTGTCTCTTAAATAAGTCAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAG
194 AAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAG
* *
1067226 GCACCATAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTAGTTTTGCTAGAAAGGC
259 GCACCACAAACATAGTCTTCTCATAAGGATGCACAATATTGATGCTTTAGTTTTGCTAGAAAGGC
* *
1067291 TTT-TTCCCTACCAATTTTTGTGACGTCTAA-TTTCGTGCCTCAAATGAGACAAACATGGATTCT
324 TTTCTTCAC-ACCAATTTTTGTGAAGTCTAAGTTT-GTGCCTCAAATGAGACAAACATGGATTCT
* * * *
1067354 AGTATTGATCATT-ATTCATTTTGTGATTAGGTAGTAT-AAGCACATTCTCCTCATTATGATAAA
387 AATATTGATC-TTCATTCATTTTGTGATTAGGCACTATGAA-CACATTCTCCTCATTAGGATAAA
1067417 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAGT
450 TGATATTGATGATTTTC-TTT---T-G----C----C---G---TATATTCCTTAAAATCAAAGT
* *
1067482 TCATCCCTTAAATGA-GACAAGCATCAATTCTCATAACAGTC-CCTATTCTTTTCAAGGTTAGGA
496 TCACCCCTTAAAT-ATGACAAGCATCAATTCTCATAACAGTCTCC-ATT-TTTTCAAGATTAGGA
* * *
1067545 ATCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGTTTTGGTGTAGCAAGA
558 AACAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTAGCAAGA
* * * * *
1067603 AAAGCTTTTCTTTGCACCATTTTTGATACAATCAAAGTTCAACTTTTAAATAAGACAAATATGAA
1 AAAGCTTTTCTTTGCACCATTTTCGATAAAATCAAAGTTCATCTCTTAAATAAGACAAACATGAA
* * *
1067668 TACTCATACTATTCCCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTTATTAGGATA
66 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATA
* *
1067733 CACGAAATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTATTTCCAACGTTTTT-GATAGAATCAA
131 CAAGAAATTGATGCTTTAGTGTAGCAAGAAAAGCTTTTATTTCCAACGTTTTTAG-TAGAATCAA
*
1067797 AGTTT-TCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAG
195 AGTTTGT-CTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAG
* * * *
1067861 GCACCACAAACTTAGTTTTCTCTTAAGGATGCACAATATTGATGCTTTGGTTTTGCTAGAAAGGC
259 GCACCACAAACATAGTCTTCTCATAAGGATGCACAATATTGATGCTTTAGTTTTGCTAGAAAGGC
* *
1067926 TTTCTTCACACCAATTTTTGTTAAGTCTAAGTTTGTGCCTCAAATGGGACAAACATGGATTCTAA
324 TTTCTTCACACCAATTTTTGTGAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAA
1067991 TATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCATTAGGATAAATGAT
389 TATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCATTAGGATAAATGAT
* * * *
1068056 ATTGATGATTTTCTTTTGCCGTATTTTTCTTAAATTCAAAGTTCACCCCTTAAATATGGCAAGCA
454 ATTGATGATTTTCTTTTGCCGTATATTCCTTAAAATCAAAGTTCACCCCTTAAATATGACAAGCA
** * *
1068121 TTGATTCTCATAATAGTCTCCATTTTTTCAAGATTGGGAAACAAAAACACATTCCCTTCATTAGG
519 TCAATTCTCATAACAGTCTCCATTTTTTCAAGATTAGGAAACAAAAACACATTCCCTTCATTAGG
*
1068186 ATACAAGACATTGATGCTTTGGTGTCGCAAGA
584 ATACAAGACATTGATGCTTTGGTGTAGCAAGA
* * * ** *
1068218 AAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAA
1 AAAGCTTTTCTTTGCACCATTTTCGATAAAATCAAAGTTCATCTCTTAAATAAGACAAACATGAA
* * * *
1068283 TACACATACTCTTCCCGATTCTTTTCACGATTAG
66 TACTCATACTATTCCCCATTCTTTTCAAGATTAG
1068317 ACACCATAAA
Statistics
Matches: 631, Mismatches: 74, Indels: 39
0.85 0.10 0.05
Matches are distributed among these distances:
615 152 0.24
616 55 0.09
617 2 0.00
619 1 0.00
622 1 0.00
626 1 0.00
630 1 0.00
631 1 0.00
634 8 0.01
635 396 0.63
636 13 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (615 bp):
AAAGCTTTTCTTTGCACCATTTTCGATAAAATCAAAGTTCATCTCTTAAATAAGACAAACATGAA
TACTCATACTATTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATA
CAAGAAATTGATGCTTTAGTGTAGCAAGAAAAGCTTTTATTTCCAACGTTTTTAGTAGAATCAAA
GTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGC
ACCACAAACATAGTCTTCTCATAAGGATGCACAATATTGATGCTTTAGTTTTGCTAGAAAGGCTT
TCTTCACACCAATTTTTGTGAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAATA
TTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCATTAGGATAAATGATAT
TGATGATTTTCTTTTGCCGTATATTCCTTAAAATCAAAGTTCACCCCTTAAATATGACAAGCATC
AATTCTCATAACAGTCTCCATTTTTTCAAGATTAGGAAACAAAAACACATTCCCTTCATTAGGAT
ACAAGACATTGATGCTTTGGTGTAGCAAGA
Found at i:1071340 original size:475 final size:476
Alignment explanation
Indices: 1068064--1073795 Score: 6593
Period size: 475 Copynumber: 12.2 Consensus size: 476
1068054 ATATTGATGA
* * * * * * * *
1068064 TTTTCTTTTGCCGTATTTTTCTTAAATTCAAAGTTCACCCCTTAAATATGGCAAGCATTGATTCT
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCTTAAAAAAGACAAGCATCGATTCT
* *
1068129 CATAATAGTCTCCATT-TTTTCAAGATTGGGAAACAAAAACACATTCCCTTCATTAGGATACAAG
64 CATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAG
* *
1068193 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTT
129 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * ** * * *
1068258 GTCTCTTAAATTAGACAAACATGAATACACATACTCTTCCCGATTCTTTTCA-CGATTAGACACC
194 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACC
* * * * * **
1068322 ATAAACTTAGTCGTCTCATTAGGATACACAATATTGGTTCTTTGATTTCTTAGGAAAGGTTTTTT
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTT
* * * * * * *
1068387 TCCCTCTAA-ATTT-T---G--T---TT-GTGCCTCAAATAAGACAAATAAGGATTCCAGTAATA
324 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATA
* * *
1068441 ATCTTCATTCATTTTGTGA-TATGGCACTATAAGCACGTTCTCTTCATTAGGATTAATGATATTG
389 ATCTTCATTCATTTTGTGATTA-GGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTG
1068505 ATGACTTTT-TTTTGCATGGAAATC
453 ATGA-TTTTCTTTTGCATGGAAATC
* *
1068529 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACATCGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAAAAAGACAAGCATCGATTCTC
* * *
1068594 ATAATAGTCTCCATTCTTTTCAGGATTGAGAAACAAAAACACATTCCCATCATTAGGATACAAGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
* * *
1068659 CATAGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTG
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * *
1068724 CCTTTTTAAATAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTTTA-GGATTAGGCACC
195 TC-TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACC
* * * * **
1068788 ATAAACATAGTCTTCTCATCAGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTT
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTT
* * * *
1068853 TCCCACCAATTTTTGCAAAGTCTAA-AT-GAG-GT-AAAT-AG--------GGATTCTAGTAATA
324 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATA
* * * * *
1068905 ATCTTCATTTATTTTGTGCTTCGGCACCATAAGCACATTCTCCTCATTAGGATTAATGATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGA
*
1068970 TGATTTTCTTTTGCATGAAAATC
454 TGATTTTCTTTTGCATGGAAATC
* * *
1068993 TTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCTCTTTAAAAAGACAAGCATCGACTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTTAAAAAAGACAAGCATCGATTCTC
* * * * * * **
1069058 GTAATAGTCTCCACTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGTATACTTGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
* * * * * *
1069123 CAGTGATGCTTTGGTGTCACTAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCG
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* *
1069188 TCTCATAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCA
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACCA
* * *
1069252 TAAACTTAGACTTCTAATTAGGATACACGATATTGGT-CTTTGGTTTCTTAAGAAAGGCTTTTTT
260 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTTT
* * * *
1069316 CTCACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAAT-AGGCCAAATAAGGATTCTCGTAATA
325 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA-GCCAAACAAGGATTCTAGTAATA
* * * * * * **
1069380 ATCTTCATTTATTTCGTGATTACGCACTATAAACACATTTTCCTCATTAGGATAAAAGATCCTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGA
* **
1069445 TTATTTTCTTTTGTGTGGAAATC
454 TGATTTTCTTTTGCATGGAAATC
* * * *
1069468 TTTTTTTTTTTGGCCCTATTTTACTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCTTCGAT
1 ---TTTTCTTT-GCCCTATTTTCCTTAAAATCAAAGTTCA-TCCTTAAAAAAGACAAGCATCGAT
* * * *
1069533 TCTCATAATAGTCCCCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATAT
61 TCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * *
1069598 ATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATAGAGTCAAAT
126 AAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* * * * * *
1069663 TTTGTCTCTTAAATATGACAAACACGAATACTCATAGTAATCCCTATTCTTTT-ATGGATTATGT
191 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGC
* * * *
1069727 ACTATAAA-TATAGCCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-TGCAAG-AAGGC
256 ACCATAAACT-TAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT-TAAGAAAGGC
* * * *
1069789 TTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTG
319 ATTTTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTA
* * * *
1069854 GTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAAGTACATTCTCCTCATTAAGATAAATGA
383 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGA
*
1069919 TATTGATGATTTTATTTTGCA-GGAAAATC
448 TATTGATGATTTTCTTTTGCATGG-AAATC
* *
1069948 TTTTCTTTGCCCTATTTTCCTTAAACTCAAAGTTCATCCCTTAAACAAGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAAAAAGACAAGCATCGATTCTC
* *
1070013 ATAATAGTGTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
*
1070078 CATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * ** * *
1070143 TCTTTTAAATAAGACAAACATGAATACACATTCTCATCCCGGTTCTTTTCA-CGATTAGGCAACA
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACCA
* ** * * * *
1070207 TAAACTTAGTATTCAGATTAGGAAAC-CGGATATTGGTGCTTTGGATTCTTAAGAAAGACTTTTT
260 TAAACTTAGTCTTCTCATTAGGATACAC-GATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTT
* * * * *
1070271 TCCCTCAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTTTAGTAATA
324 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATA
* * *
1070336 ATCTTCATTCATTTTGTGATTCGGCACTATAAGAACATTCTCCTCATTAGGATAAATGATATCGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGA
1070401 TGATTTTCTTTTGCATGGAAATC
454 TGATTTTCTTTTGCATGGAAATC
*
1070424 TTTGT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACACGCATCGATTCT
1 TTT-TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAAAAAGACAAGCATCGATTCT
* * * *
1070488 CGTAATAGGC-CCATTCCTTTCAGGATTGGGAACCAAAAACATATT-CC--C-TTAGGATACAAG
64 CATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAG
* * * * *
1070548 ACATTGATTCTTTAGTGTCGCAAGAAAAG-TTTTCTTTCCACCGTTTTTGATACAATCAAAGTTC
129 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
** * * * *
1070612 AACTTTTAAATAAGACAAATATGAATACTCATACTATTCCCCATTCTTTTTAT-GATTAGGCACC
194 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACC
* * * * * *
1070676 ATAAACTTAGTTTTATAATTAGGGTACATGATATTGGTGCTTT-GTTTCTTAAGAAAGGCTTTTT
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTT
* * * * * * *
1070740 TGCCACCAATTTTTGTAAACTCTAAATTCGTACCTCAAATGAGGCAATCAAGTATTCTAGTAATA
324 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATA
* * * **
1070805 ATCTTCTTTCATTTTGTGATTCGGCACTATAAGCACATTCTCATTGTTAGGATAAATGATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGA
*
1070870 TGATTTTATTTTGCATGGAAATC
454 TGATTTTCTTTTGCATGGAAATC
* * * *
1070893 TTTTCTTCGCCGTATTTTCCTTAAAATCAAAGTTAATCC-TACAAAAAGACAAGCATCAATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTA-AAAAAGACAAGCATCGATTCTC
* * ** * * * *
1070957 ATAACAGTCTCCATTCTTTTTAGGATTTTGAACCTAAAAGACATTCCCTTCATTGGGATACATGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
* *
1071022 CATTGATGCTTTGGTGTTGCAAGAAACGCTTTTCTTTCCACCATTTTTGATA-AAGTCAAAGTTT
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA-TCAAAGTTT
* * * * *
1071086 ATCTCTTAAATAAGACAAACATGAATACTTATAGTAATCCCCATTC-TCTCATGGATTAGGTACC
194 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACC
* * **
1071150 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTT
* * * * * **
1071214 TCGCTACCAATTTATATAAACTCTAAGCTT-GTGCCTCAAATGAGACAAACTTGGATTCTAGTAA
324 TC-CCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAA
* ** * * *
1071278 TGATCTTCGGTCATTTTATGATTAGACACTATAAGCACATTCTCCTCAGTAGGATAAATGATATT
387 TAATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATT
*
1071343 GATGATTTTCTTTTGCATGAAAATC
452 GATGATTTTCTTTTGCATGGAAATC
* *
1071368 TTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTATATAAA-ACAAGCATCGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTA-AAAAAGACAAGCATCGATTCT
* * * *
1071431 CGTAATAGGCCCCATTCCTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAG
64 CATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAG
* * * *
1071496 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATACAATCAAAGGTC
129 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * *
1071561 ATCTTTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACC
194 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACC
* * * *
1071625 ATAAGCTTAGTTTTCTCATTAGGATACACGATATTGGTGCTTAGGTTTCTTGAGAAAGGCATTTC
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTT-
* *
1071690 TT-CCACCAATTTTTGTAAAGTC-AATGTTCGTGCCTCAAATGAGCCATACAAGTATTCTAGT-A
323 TTCCCACCAATTTTTGTAAAGTCTAA-GTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAA
* * * * * * **
1071752 TAATCTTCTTTTATTTTGTGATTCGGTATTATAAGTACATTCTCCAAATTAGGATAAATGATATT
387 TAATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATT
*
1071817 GATGATTTTCTTTTGCATGAAAATC
452 GATGATTTTCTTTTGCATGGAAATC
* *
1071842 TTTTCTTTGCCCTATTTTCTTTAAAATAAAAGTTCATCCCTT--AAAAGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAAAAAGACAAGCATCGATTCTC
* * * * * ** *
1071905 GTAATAGTCACCATTCCTTTCAGGACTAGGAACCAAAAATGCATTCCCTTCATTAGGATGCAAGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
* *
1071970 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTCTCTTTCCACCATCTTT--TA-AAT--AAG---G
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* *
1072027 ---C-------AG----ACATTAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCA
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACCA
* * ** * * *
1072077 TAAACTTAGTTTTCTCAATAGGATACATAATATTGGTGGTTTGGTTTCTTAAGAAAAGCTTTTTT
260 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTTT
* * * * * *
1072142 CCCACCAATTTTTGTAAAATCTAAGTTCGTACCTCAAATTAAAGCCAAACAAGTATTTTAGAAAT
325 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA-T-GAGCCAAACAAGGATTCTAGTAAT
* * *
1072207 AATCTTCAATCATTTTGTGATTCGGCA--AT---CATATTCTCCTCATTAGGATAAATGATATTG
388 AATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTG
* **
1072267 ATGATTTTGTTTTGCATAAAAATC
453 ATGATTTTCTTTTGCATGGAAATC
* * * *
1072291 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCTTTAAATAAGACACGCATCAATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-TTAAAAAAGACAAGCATCGATTCTC
* * * * * * *
1072356 ATAATAGTCCCCATTTTTTTCAAGATTGGGAACGAAAAACATATTCCCTTTATTAGGATACATGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
* *
1072421 AATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * *
1072486 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT--TGAGATTAGGCACT
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATG-GATTAGGCACC
* * * * *
1072549 ATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTT-TGCT-AGAAAGGC-TT
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT--TAAGAAAGGCATT
* * * *
1072611 TTCTCCCACCAATTTTTGAAAAGTCTAAGTTCTTGCCTCAAATGAGCCAAACATGGATTCCAGTA
322 TT-TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
* * * * * *
1072676 TTGATCTTCATTCCTTTTGTGATAAGGCACTATGAA-CAAATTCTTCTCATTAGGATAAATGATA
386 ATAATCTTCATTCATTTTGTGATTAGGCACTAT-AAGCACATTCTCCTCATTAGGATAAATGATA
**
1072740 TTGATGATTTTCTTTTGTGTGGAAATC
450 TTGATGATTTTCTTTTGCATGGAAATC
* * * *
1072767 TTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCACTT-AAAAAGATAAGCATTGATTCTG
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTTAAAAAAGACAAGCATCGATTCTC
* * * ** * * **
1072831 TTAACAGTGTCCATTCTTTTCAGGATTTTGAACCTAAAACACATTCCTTTCATTAGGATACTTGA
65 ATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGA
* * * ** *
1072896 CATTGTTGCTTTGTTGTTGCAAGAAAAGCTTTTCTTTCTGCTATTTTTGATAGAATCAAAGTTTG
130 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * *
1072961 CCTTTTAAATAAGACAAAAATGAATAGTCAAACTAATCCCTATTCTTTT--TGGGATTAGGCACC
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAT-GGATTAGGCACC
* * * ** * * ***
1073024 ATAAACATAGTCTTCTCATTTGGATACGCGATATTGAAGTTTTGGCTTAACAAGAAAGGCATTTT
259 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTT
* * * * * * * * *
1073089 TCCAACTAATTTTTGCAAAGTCTATGTTCATGTCTCAAATGAGGCAAACATGGATTCTAGTAACA
324 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATA
* * * * *
1073154 ATCCTCATTTATTTTGTGATTCGGCACTATAAGCACATTCACCTCATTAGGATAAATGAT-CTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGA
1073218 TGATTTTCTTTTGCAT-GAAATTC
454 TGATTTTCTTTTGCATGGAAA-TC
** *
1073241 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAAG-CGTGCATCAATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-TTAAA-AAAGACAAGCATCGATTCT
* * * *
1073305 CATAACAGTCCCCATTCTTTTCAGGATTGGGAACCAACAACACATT-CCGTCATTAGGATACAAG
64 CATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAG
* * *
1073369 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAATTT
129 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * *
1073434 GTCTCTTAAATAAGACAAACATGAATACACATACT-CTACCCCAATCTTTTCA-CGATTAGGCAT
194 GTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCCATTCTTTTCATGGATTAGGCAC
* * ** * *
1073497 CACAAACTTAGTCTTCTTATTAGGATACGTGATATTGGTGCCTTGGTTTCTTAAGAAAAGC-TTT
258 CATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTT
* * *
1073561 TCGCCCACCAATTTTTGTAAAGTC--AGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
323 T-TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAA
* * * * *
1073624 TGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTTCTCTTTAGGATAAATGATATT
387 TAATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATT
* * * *
1073689 GATAATTTTCTTTTGCCTAGAAACC
452 GATGATTTTCTTTTGCATGGAAATC
* *
1073714 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAAAAAGACAAGCATCGATTCTC
*
1073779 ATAATAGTCCCCATTCT
65 ATAATAGTCTCCATTCT
1073796 GTTTTTGATA
Statistics
Matches: 4479, Mismatches: 656, Indels: 256
0.83 0.12 0.05
Matches are distributed among these distances:
448 2 0.00
449 87 0.02
450 2 0.00
451 245 0.05
452 5 0.00
453 19 0.00
454 28 0.01
455 2 0.00
456 3 0.00
459 1 0.00
462 46 0.01
463 93 0.02
464 321 0.07
465 116 0.03
466 114 0.03
467 6 0.00
468 32 0.01
469 216 0.05
470 124 0.03
471 81 0.02
472 100 0.02
473 385 0.09
474 488 0.11
475 957 0.21
476 569 0.13
477 29 0.01
478 10 0.00
479 260 0.06
480 137 0.03
481 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAAAAAGACAAGCATCGATTCTCA
TAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGGATTAGGCACCAT
AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCATTTTTC
CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATAAT
CTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATG
ATTTTCTTTTGCATGGAAATC
Found at i:1072526 original size:159 final size:158
Alignment explanation
Indices: 1072236--1073562 Score: 443
Period size: 158 Copynumber: 8.4 Consensus size: 158
1072226 ATTCGGCAAT
* * * * * *
1072236 CATATTCTCCTCATTAGGATAAATGATATTGATGATTTTGTTTTGCATA-AAAATCTTTTCTTTG
1 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAAAGCTTTTCTTT-
* * ** * *
1072300 CC-CTATTTTCT-TTAAAATCAAAGTTCATCCTTTAAATAAGACACGCATCAATTCTCATAATAG
64 CCACCATTTT-TGATAAAATCAAAGTT-ATCCTTTAAATAAGACAAACATCAATACTCATAATAA
*
1072363 TCCCCATT-TTTTTCAAGATTGGGAACGAAAAA
127 TCCCCATTCTTTTT-AAGATTAGGAACGAAAAA
* * *
1072395 CATATTCCCTT-T-ATTAGGATACATGAAATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
1 CATAGT--CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT
* * * *
1072458 CCACCATTTTTGATAGAATCAAAGTT-TGCCTCTTAAATAAGACAAACATGAATAGTCATACTAA
64 CCACCATTTTTGATAAAATCAAAGTTAT-CCT-TTAAATAAGACAAACATCAATACTCATAATAA
* * * *
1072522 TCCCCATTCTTTTTGAGATTAGGCACTATAAA
127 TCCCCATTCTTTTTAAGATTAGGAACGAAAAA
* * * * *
1072554 CATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTTTC-TCCC
1 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCC
* * * * * * ** * * *
1072618 ACCAATTTTTGA-AAAGTCTAAGTTCTTGCC-TCAAATGAGCCAAACATGGATTC-CAGTATTGA
66 ACC-ATTTTTGATAAAATCAAAGTT-AT-CCTTTAAATAAGACAAACATCAATACTCA-TAATAA
** * ** * * * **
1072680 TCTTCATTCCTTTTGTGATAAGGCACTATGAA
127 TCCCCATTCTTTTTAAGATTAGGAACGAAAAA
* * * * ** *** * *
1072712 CAAATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTAC
1 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-C
* *** * * ** * ** * *
1072777 C-CTATTTTCCTTAAAATCAAAGTTCATCAC-TTAAA-AAGATAAGCATTGATTCTGTTAACAGT
65 CACCATTTTTGATAAAATCAAAGTT-ATC-CTTTAAATAAGACAAACATCAATACTCATAATAAT
** * * ** **
1072839 GTCCATTCTTTTCAGGATTTTGAACCTAAAA
128 CCCCATTCTTTTTAAGATTAGGAACGAAAAA
* * * * *
1072870 CACATTCCTT-TCATTAGGATACTTGACATTGTTGCTTT-GTTGTTGCAAGAAAAGCTTTTCTTT
1 CATAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTT-TTGCAAGAAAAGCTTTTCTTT
** * * * * *
1072933 CTGCTATTTTTGATAGAATCAAAGTT-TGCCTTTTAAATAAGACAAAAATGAATAGTCA-AACTA
64 CCACCATTTTTGATAAAATCAAAGTTAT-CC-TTTAAATAAGACAAACATCAATACTCATAA-TA
* ** * * *
1072996 ATCCCTATTCTTTTTGGGATTAGGCACCATAAA
126 ATCCCCATTCTTTTTAAGATTAGGAACGAAAAA
* ** * * * ** * *
1073029 CATAGTCTTCTCATTTGGATACGCGATATTGAAGTTTTGGCTTAACAAGAAAGGC-ATT-TTTCC
1 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCC
* * * * * * * * * ** * *
1073092 AACTAATTTTTG-CAAAGTCTATGTTCAT-GTCTCAAATGAGGCAAACATGGATTCT-AGTAACA
66 -AC-CATTTTTGATAAAATCAAAGTT-ATCCT-TTAAATAAGACAAACATCAATACTCA-TAATA
* ** * * * * *
1073154 ATCCTCATT-TATTTTGTGATTCGGCACTATAAG
126 ATCCCCATTCT-TTTTAAGATTAGGAACGAAAAA
* * ** * * * ** * **
1073187 CACATTCACCTCATTAGGATAAATGAT-CTGATGATTTTCTTTTGCATGAAATTCTTTTCTTTGC
1 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-C
* *** *** * * *
1073251 C-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAA-AGCGTGCATCAATTCTCATAACAGT
65 CACCATTTTTGATAAAATCAAAGTT-ATCCTTTAAATAAGA-CAAACATCAATACTCATAATAAT
* * * * *
1073314 CCCCATTCTTTTCAGGATTGGGAACCAACAA
128 CCCCATTCTTTTTAAGATTAGGAACGAAAAA
* * * * * *
1073345 CACA-T-TCCGTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
1 CATAGTCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTC
* * * * * * * * *
1073408 CACCGTTTTTTATAGAATCAAAATT-TGTCTCTTAAATAAGACAAACATGAATACACATACT-CT
65 CACCATTTTTGATAAAATCAAAGTTAT-CCT-TTAAATAAGACAAACATCAATACTCATAATAAT
* * * * *
1073471 ACCCCAATCTTTTCACGATTAGGCATC-ACAAA
128 -CCCCATTCTTTTTAAGATTAGG-AACGAAAAA
* * * * * *
1073503 CTTAGTCTTCTTATTAGGATACGTGATATTGGTGCCTTGGTTTCT-TAAGAAAAGCTTTTC
1 CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTT-TGCAAGAAAAGCTTTTC
1073563 GCCCACCAAT
Statistics
Matches: 847, Mismatches: 265, Indels: 112
0.69 0.22 0.09
Matches are distributed among these distances:
156 5 0.01
157 58 0.07
158 445 0.53
159 318 0.38
160 19 0.02
161 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCC
ACCATTTTTGATAAAATCAAAGTTATCCTTTAAATAAGACAAACATCAATACTCATAATAATCCC
CATTCTTTTTAAGATTAGGAACGAAAAA
Found at i:1078910 original size:12 final size:11
Alignment explanation
Indices: 1078888--1078963 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1078878 AGAGAAAGAA
*
1078888 GAGAGAGGAGG
1 GAGATAGGAGG
1078899 GATGATAGGAGG
1 GA-GATAGGAGG
*
1078911 AGAGACAGGA--
1 -GAGATAGGAGG
*
1078921 GAGATAGTA--
1 GAGATAGGAGG
1078930 GAGATAGGAGG
1 GAGATAGGAGG
1078941 GATGATAGGAGG
1 GA-GATAGGAGG
*
1078953 AGAGACAGGAG
1 -GAGATAGGAG
1078964 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1078920 original size:24 final size:24
Alignment explanation
Indices: 1078887--1078972 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1078877 AAGAGAAAGA
*
1078887 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1078911 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1078929 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1078953 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1078973 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1078939 original size:42 final size:42
Alignment explanation
Indices: 1078878--1078996 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1078868 TAGCCCTCAA
* *
1078878 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1078920 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1078962 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1078997 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1084877 original size:159 final size:157
Alignment explanation
Indices: 1084205--1084901 Score: 370
Period size: 159 Copynumber: 4.4 Consensus size: 157
1084195 CACATTCCCG
* * * * * * *
1084205 TCATTAGGATACAAGACATTGATGCTTTAGTGTT-GTAAGAAAAGCTTTTCTTTCGACCATTTTT
1 TCATTAAGATACATGATATTGATTCTTTGGT-TTCTTAAGAAAAGCTTTTCTTTCCACCATTTTT
1084269 AAAAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCCTT
65 AAAAGAATCAAAGTTCATCTCTTAAA-AAGACAAACATGAATACACATACTCTTCCCCATT-CTT
* *
1084334 TTGTGATTAGGCACCATAAACTTTGTCTTC
128 TTATGATTAGCCACCATAAACTTTGTCTTC
* * * * *
1084364 TCATTAAGATACACGATAATGGTTCTTTGGTTTCTTAAGAAAGGC-TTT-TTCCCACCAATTTTT
1 TCATTAAGATACATGATATTGATTCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * * * * * * * ** *** *
1084427 GCAAAG--TCTAAGTTCGTAC-CTTAAAAGAGCCAAATAAGGATTC-CAGTATTGATATTCTTTC
65 -AAAAGAATCAAAGTTCAT-CTCTTAAAA-AGACAAACATGAATACACA-TACTCTTCCCCATTC
* ** *
1084488 ATTTTGTGATTA-CGCACTTTAAACATAT-TCTTC
126 -TTTTATGATTAGC-CACCATAAAC-TTTGTCTTC
* * * * ** * * *
1084521 ACCTTAGGATAAATGATATTGATAAT-TTTCTTTTGCGT--GAAAATCTTTTCTTTGC-CC-TAT
1 TCATTAAGATACATGATATTGAT--TCTTTGGTTT-CTTAAGAAAAGCTTTTCTTTCCACCAT-T
* * * * * * * * ** * *
1084581 TTTACTTAA-AATCAAAGTTCATCCCTTAAAAAGACAAGCCTCG-ATTCTCGTAATAGTCTCCTT
62 TTTA--AAAGAATCAAAGTTCATCTCTTAAAAAGACAAACAT-GAATACACATACTCTTCCCCAT
* * ** * * ** *
1084644 TCTTTTCAGGATTGGGAACCAAAAACACATTCCCGT-
124 TCTTTT-ATGATTAGCCACC-ATAA-ACTTTGTCTTC
* * * * ** *
1084680 TC-TTAGGATACAAGACATTGATGCTTTGGCCTCATAAGAAAAGCTTTTCTTTCCACCATTTTTA
1 TCATTAAGATACATGATATTGATTCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTA
**
1084744 AAAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTT
66 AAAGAATCAAAGTTCATCTCTTAAA-AAGACAAACATGAATACACATACTCTTCCCCATTCTTTT
1084809 CATGATTAGCCACCATAAACTTTGTCTTC
130 -ATGATTAGCCACCATAAACTTTGTCTTC
* * *
1084838 TCATTAAGATACATGATATTGGTTCTTTGGTTTCTTAAGAAAGGCTTTT-TTCCCACCAATTTTT
1 TCATTAAGATACATGATATTGATTCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACC-ATTTTT
1084902 GCAAATTCTA
Statistics
Matches: 384, Mismatches: 116, Indels: 76
0.67 0.20 0.13
Matches are distributed among these distances:
156 7 0.02
157 104 0.27
158 116 0.30
159 152 0.40
160 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (157 bp):
TCATTAAGATACATGATATTGATTCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTA
AAAGAATCAAAGTTCATCTCTTAAAAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTA
TGATTAGCCACCATAAACTTTGTCTTC
Found at i:1085199 original size:475 final size:476
Alignment explanation
Indices: 1083978--1086823 Score: 3628
Period size: 475 Copynumber: 6.0 Consensus size: 476
1083968 CATCATGTCG
* *
1083978 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCCTTTTCTGATTAGGCACTATAAACA
1 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
*
1084043 CATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCGTGAAAATCTTTTCTTTGCCC
66 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
* * * *
1084107 AATTTTCCCTAAAATCAAAGTTCAT-CCATTAAATAA-G---GCATCAATTATCATGACAGTCCC
131 TATTTTCCTTAAAATCAAAGTTCATCCCA-TAAATAAGGCATGCATCAATTCTCATAACAGTCCC
* * *
1084167 TATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCGTCATTAGGATACAAGACATTGATGCTT
195 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTT
* * * * * * **
1084232 TAGTGTTGTAAGAAAAGCTTTTCTTTCGACCATTTTTAAAAGAATCAAAGTTCATCTCTTAAATA
260 TGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCAAAGTTTGTCTCTTAAATA
* *
1084297 AGACAAACATGAATACACATACTCTTCCCCATTCCTTTT-GTGATTAGGCACCATAAACTTTGTC
325 AGACAAACATGAATACACATACTCTACCCCATT-CTTTTCATGATTAGGCACCATAAACTTTGTC
* *
1084361 TTCTCATTAAGATACACGATAATGGTTCTTTGGTTTCTTAAGAAAGGC-TTTTTCCCACCAATTT
389 TTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTT
*
1084425 TTGCAAAGTCTAAGTTCGTACCT
454 TTGCAAAGTCTAAGTTCGTGCCT
* * * * * * * *
1084448 TAAAAGAGCCAAATAAGGATTCCAGTATTGATATTCTTTCATTTTGTGATTACGCACTTTAAACA
1 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * * *
1084513 TATTCTTCACCTTAGGATAAATGATATTGATAATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCC
66 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
* * * * * * * * *
1084578 TATTTTACTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCCTCGATTCTCGTAATAGTCTCC
131 TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCATGCATCAATTCTCATAACAGTCCCC
* *
1084642 TTTCTTTTCAGGATTGGGAACCAAAAACACATTCCCGTTC-TTAGGATACAAGACATTGATGCTT
196 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC-TTCATTAGGATACAAGACATTGATGCTT
** ** * *
1084706 TGGCCTCATAAGAAAAGCTTTTCTTTCCACCATTTTTAAAAGAATCAAAGTTTGTCTCTTAAATA
260 TGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCAAAGTTTGTCTCTTAAATA
* *
1084771 AGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGCCACCATAAACTTTGTCT
325 AGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCT
* *
1084836 TCTCATTAAGATACATGATATTGGTTCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTT
390 TCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTT
* *
1084901 TGCAAATTCTAAGTCCGTGCCT
455 TGCAAAGTCTAAGTTCGTGCCT
* * * * * * * *
1084923 CAAATGAGCTAAACAAGTATTCTAGTAATAATCTACATTCATTTTGTTA-TATGGCACCATAAGC
1 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTA-GGCACTATAAAC
* * * * *
1084987 ACATTTTCCTCATTAGGATAAATGCTATTGATTATTTTCCTTTGCGTGGAAATCTTTTTTTTGCC
65 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC
* * * *
1085052 CTGTTTTCTTTAAAATCAAAGTTCAACCCATAAATAAGGCACGCATCAATT-TCATAACAGTCCC
130 CTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCATGCATCAATTCTCATAACAGTCCC
* ** * *
1085116 CATTCTTTTTAAGATTGTAAACCAAAAACACATTCCCTTCTTTAGGATACACGACATTGATGCTT
195 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTT
* * * * * *
1085181 TGGTGTGGCAAAAAAAGCTTTTGTTTCCACCGCTTTTGATAGAATCAAAGTTTATCTCTTAAATA
260 TGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCAAAGTTTGTCTCTTAAATA
* * *
1085246 AGAGAAACATGAATACACATACTCTACCCCATTCTTTTCAAGATTAGGTACCATAAACTTAT-TC
325 AGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTT-TGTC
*
1085310 TTCTCATTAAGATACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTT
389 TTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTT
*
1085375 TTGTAAAGTCTAAGTTCGTGCCT
454 TTGCAAAGTCTAAGTTCGTGCCT
* * * * * * *
1085398 CAAATGATCCAAAGATGGATTCTGGTATTGATCTTCACTCATTTTGCGATTATGCACTATAAACA
1 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
1085463 CATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTACCC
66 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
* * *
1085528 TATTTTTCTTAAAATCAAAGTTCATCCCATAAATAAGGCGTGCATCAATTCTCATAATAGTCCCC
131 TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCATGCATCAATTCTCATAACAGTCCCC
* * * **
1085593 ATTTTTTTCAGGAATGGGAACCAAAAACACATT-CCTGTCATTAGGATACAAGATTTTGATGCTT
196 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT-TCATTAGGATACAAGACATTGATGCTT
* * * * * *
1085657 TGGTGTTGCAAGAAAAGCTTTTTTTTTCACCGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATA
260 TGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
1085722 AGACAAACATGAATACACATACTCTACCCCATTCTTTTCACGATTATGCACCAAAAACTTAGTTT
325 AGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCT
* * * * * * *
1085787 TCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTTGAGAAACGCTTTTTTCCCTCAAATATT
390 TCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTT
* *
1085852 TGCAAATTCTAAGTTCATGCCT
455 TGCAAAGTCTAAGTTCGTGCCT
* * * * * * * * *
1085874 CAAATGAGCTAAACAAGTATTGTAGTAATAATCTTCATTCATTTTGTGATTCGGGACAATAAGCA
1 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * *
1085939 CATTCTCCTCATTAGGATAAATGATATTGATGATTTACCTTTGCATGGAAATCTTTTCCTTGCTC
66 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
* * **
1086004 TATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAAACATGCATCAATTCTCATAACAGT-CCC
131 TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCATGCATCAATTCTCATAACAGTCCCC
* * * * *
1086068 ATTCTTTCCAAGATTAGGAACCAAAAACACATTCCCTTCATTATGATACACGACATTGATGTTTT
196 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTT
* * * * * *
1086133 GGGGTCACAAGAAAAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
261 GGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
1086198 GACAAACATAAATACACATACTCTACCTCATTCTTTTCATGATTAGGCACCTTAAACTTAGTCTT
326 GACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTT
* * * *
1086263 CTCCTTAGGATACACGATATTAGTGCTTTCGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
391 CTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
* * *
1086328 GTAAAGTCTAAATTCATGCCT
456 GCAAAGTCTAAGTTCGTGCCT
* * * * * * * * *
1086349 CAAATGATCAAAACAATGATTCTAGCATTGATCTTCACTCATTTTGCGATTACGCAATATAACCA
1 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
1086414 CATTCTCCTCATTAGGTTAAACGATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
66 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
***
1086479 TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGTTGTGCATCAATTCTCATAACAGTCCCC
131 TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCATGCATCAATTCTCATAACAGTCCCC
* * * *
1086544 ACTCATTTCAAGAGTGGGAACCAAAAACACATTCCCTTTATTAGGATA-AACGACATTGATGCTT
196 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAA-GACATTGATGCTT
* ** * * *
1086608 TGGTGTCGC-AAAAAAGCATTTCATTT-TGCTG-TTTTAGATAA-AATCAAAGTCTGTCTTTTAA
260 TGGTGTCGCAAAAAAAGCTTTTC-TTTCCACCGTTTTTA-A-AAGAATCAAAGTTTGTCTCTTAA
* *
1086669 ATAAGAGAAACATGAATACACATACTCTACCCCATTCTTTTCACGATTAGGCACCATAAACTTAT
322 ATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTT-T
*
1086734 -TCTTCTCATTAAGATACACAATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAA
386 GTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAA
* * *
1086798 TTTTTGTATAGTCTAAGTTCATGCCT
451 TTTTTGCAAAGTCTAAGTTCGTGCCT
1086824 TGATGACAAC
Statistics
Matches: 2047, Mismatches: 305, Indels: 43
0.85 0.13 0.02
Matches are distributed among these distances:
470 89 0.04
471 53 0.03
472 2 0.00
473 5 0.00
474 243 0.12
475 1156 0.56
476 499 0.24
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (476 bp):
CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
TATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCATGCATCAATTCTCATAACAGTCCCC
ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTT
GGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCAAAGTTTGTCTCTTAAATAA
GACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTT
CTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
GCAAAGTCTAAGTTCGTGCCT
Found at i:1085982 original size:951 final size:946
Alignment explanation
Indices: 1083978--1086823 Score: 3804
Period size: 951 Copynumber: 3.0 Consensus size: 946
1083968 CATCATGTCG
* * * * * * * *
1083978 CAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCCTTTTCTGATTAGGCACTATAAACA
1 CAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATT-GGCACAATAAGCA
** * *
1084043 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCGTGAAAATCTTTTCTTTGCCCA
65 CATTCTCCTCATTAGGATAAATGATATTGATGATTTCCTTTGCGTGGAAATCTTTTCTTTGCCCT
* * * *
1084108 ATTTTCCCTAAAATCAAAGTTC-ATCCATTAAATAAG--GCATCAATTATCATGACAGTCCCTAT
130 ATTTTCCTTAAAATCAAAGTTCAACCCA-TAAATAAGCAGCATCAATTATCATAACAGTCCCCAT
* * * *
1084170 TCTTTTCAGGATTGGGAACCAAAAACACATTCCCGTCATTAGGATACAAGACATTGATGCTTTAG
194 TCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGG
* * * * * * *
1084235 TGTTGTAAGAAAAGCTTTTCTTTCGACCATTTTTAAAAGAATCAAAGTTCATCTCTTAAATAAGA
258 TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGA
* *
1084300 CAAACATGAATACACATACTCTTCCCCATTCCTTTT-GTGATTAGGCACCATAAACTT-TGTCTT
323 CAAACATGAATACACATACTCTACCCCATT-CTTTTCATGATTAGGCACCATAAACTTAT-TCTT
* *
1084363 CTCATTAAGATACACGATAATGGTTCTTTGGTTTCTTAAGAAAGGC-TTTTTCCCACCAATTTTT
386 CTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
* * * * * * * **
1084427 GCAAAGTCTAAGTTCGTACCTTAAAAGAGCCAAATAA-GGATTCCAGTATTGATATTCTTTCATT
451 GTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAA-AATGGATTCTAGTATTGATCTTCACTCATT
* * * * * * * *
1084491 TTGTGATTACGCACTTTAAACATATTCTTCACCTTAGGATAAATGATATTGATAATTTTCTTTTG
515 TTGCGATTACGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTG
* * **
1084556 CGTGAAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGC
580 CGTGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCATAAATAAGACGTGC
* * * * * *
1084620 CTCGATTCTCGTAATAGTCTCC-TTTCTTTTCAGGATTGGGAACCAAAAACACATTCCCGTTC-T
645 ATCAATTCTCATAATAGTCCCCATTT-TTTTCAGGAATGGGAACCAAAAACACATTCCTG-TCAT
** ** * * * *
1084683 TAGGATACAAGACATTGATGCTTTGGCCTCATAAGAAAAGCTTTTCTTTCCACCATTTTTAAAAG
708 TAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTTCACCGTTTTTAATAG
* *
1084748 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATG
773 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCACG
* * * *
1084813 ATTAGCCACCATAAACTTTGTCTTCTCATTAAGATACATGATATTGGTTCTTTGGTTTCTTAAGA
838 ATTAG-CACCATAAACTTAGTTTTCTCATTAAGATACACGATATTGGTCCTTTGGTTTCTTAAGA
* *
1084878 AAGGCTTTTTTCCCACCAATTTTTGCAAATTCTAAGTCCGTGCCT
902 AAGGCTTTTTTCCCACCAATTTTTGCAAATTCTAAGTTCATGCCT
* * *
1084923 CAAATGAGCTAAACAAGTATTCTAGTAATAATCTACATTCATTTTGTTATATGGCACCATAAGCA
1 CAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGAT-TGGCACAATAAGCA
* * * *
1084988 CATTTTCCTCATTAGGATAAATGCTATTGATTATTTTCCTTTGCGTGGAAATCTTTTTTTTGCCC
65 CATTCTCCTCATTAGGATAAATGATATTGATGA-TTTCCTTTGCGTGGAAATCTTTTCTTTGCCC
* *
1085053 TGTTTTCTTTAAAATCAAAGTTCAACCCATAAATAAGGCACGCATCAATT-TCATAACAGTCCCC
129 TATTTTCCTTAAAATCAAAGTTCAACCCATAAATAA-GCA-GCATCAATTATCATAACAGTCCCC
* * *
1085117 ATTCTTTTTAAGATTGTAAACCAAAAACACATTCCCTTCTTTAGGATACACGACATTGATGCTTT
192 ATTCTTTTCAAGATTG-GAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTT
* * * *
1085182 GGTGTGGCAAAAAAAGCTTTTGTTTCCACCGCTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
256 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * *
1085247 GAGAAACATGAATACACATACTCTACCCCATTCTTTTCAAGATTAGGTACCATAAACTTATTCTT
321 GACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTATTCTT
*
1085312 CTCATTAAGATACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
386 CTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
* *
1085377 GTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAAGATGGATTCTGGTATTGATCTTCACTCATTT
451 GTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAAAATGGATTCTAGTATTGATCTTCACTCATTT
*
1085442 TGCGATTATGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGC
516 TGCGATTACGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGC
* * *
1085507 GTGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCATCCCATAAATAAGGCGTGCA
581 GTGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCATAAATAAGACGTGCA
1085572 TCAATTCTCATAATAGTCCCCATTTTTTTCAGGAATGGGAACCAAAAACACATTCCTGTCATTAG
646 TCAATTCTCATAATAGTCCCCATTTTTTTCAGGAATGGGAACCAAAAACACATTCCTGTCATTAG
** * *
1085637 GATACAAGATTTTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTTCACCGTTTTTAATAGAAT
711 GATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTTCACCGTTTTTAATAGAAT
*
1085702 CAAAGTTTGCCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCACGATT
776 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCACGATT
* * * *
1085767 ATGCACCAAAAACTTAGTTTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTTGAGAAAC
841 A-GCACCATAAACTTAGTTTTCTCATTAAGATACACGATATTGGTCCTTTGGTTTCTTAAGAAAG
* * *
1085832 GCTTTTTTCCCTCAAATATTTGCAAATTCTAAGTTCATGCCT
905 GCTTTTTTCCCACCAATTTTTGCAAATTCTAAGTTCATGCCT
* *
1085874 CAAATGAGCTAAACAAGTATTGTAGTAATAATCTTCATTCATTTTGTGATTCGGGACAATAAGCA
1 CAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATT-GGCACAATAAGCA
* * *
1085939 CATTCTCCTCATTAGGATAAATGATATTGATGATTTACCTTTGCATGGAAATCTTTTCCTTGCTC
65 CATTCTCCTCATTAGGATAAATGATATTGATGATTT-CCTTTGCGTGGAAATCTTTTCTTTGCCC
* * * * *
1086004 TATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAAACATGCATCAATTCTCATAACAGT-CCC
129 TATTTTCCTTAAAATCAAAGTTCAACCCATAAAT-AAGCA-GCATCAATTATCATAACAGTCCCC
* * *
1086068 ATTCTTTCCAAGATTAGGAACCAAAAACACATTCCCTTCATTATGATACACGACATTGATGTTTT
192 ATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTT
* * * *
1086133 GGGGTCACAAGAAAAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
256 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * *
1086198 GACAAACATAAATACACATACTCTACCTCATTCTTTTCATGATTAGGCACCTTAAACTTAGTCTT
321 GACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTATTCTT
* * * *
1086263 CTCCTTAGGATACACGATATTAGTGCTTTCGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
386 CTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTT
* * * *
1086328 GTAAAGTCTAAATTCATGCCTCAAATGATCAAAACAAT-GATTCTAGCATTGATCTTCACTCATT
451 GTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAA-AATGGATTCTAGTATTGATCTTCACTCATT
* * *
1086392 TTGCGATTACGCAATATAACCACATTCTCCTCATTAGGTTAAACGATATTGATGATTTTCTTTTG
515 TTGCGATTACGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTG
* * * **
1086457 CATGGAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGTTGTGC
580 CGTGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCATAAATAAGACGTGC
* * ** * * *
1086522 ATCAATTCTCATAACAGTCCCCACTCATTTCAAGAGTGGGAACCAAAAACACATTCCCT-TTATT
645 ATCAATTCTCATAATAGTCCCCATTTTTTTCAGGAATGGGAACCAAAAACACATT-CCTGTCATT
* * *
1086586 AGGATA-AACGACATTGATGCTTTGGTGTCGCAA-AAAAGCATTTCATTTT-GCTG-TTTTAGAT
709 AGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTATTTTCACCGTTTTTA-AT
* * * *
1086647 AAAATCAAAGTCTGTCTTTTAAATAAGAGAAACATGAATACACATACTCTACCCCATTCTTTTCA
771 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* *
1086712 CGATTAGGCACCATAAACTTA-TTCTTCTCATTAAGATACACAATATTGGTGCTTTGGTTTCTTA
836 CGATTA-GCACCATAAACTTAGTT-TTCTCATTAAGATACACGATATTGGTCCTTTGGTTTCTTA
* * *
1086776 AGAAAGGCTTTTTTCCCACCAATTTTTGTATAGTCTAAGTTCATGCCT
899 AGAAAGGCTTTTTTCCCACCAATTTTTGCAAATTCTAAGTTCATGCCT
1086824 TGATGACAAC
Statistics
Matches: 1672, Mismatches: 202, Indels: 49
0.87 0.11 0.03
Matches are distributed among these distances:
945 83 0.05
946 54 0.03
947 5 0.00
948 6 0.00
949 226 0.14
950 360 0.22
951 916 0.55
952 22 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (946 bp):
CAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATTGGCACAATAAGCAC
ATTCTCCTCATTAGGATAAATGATATTGATGATTTCCTTTGCGTGGAAATCTTTTCTTTGCCCTA
TTTTCCTTAAAATCAAAGTTCAACCCATAAATAAGCAGCATCAATTATCATAACAGTCCCCATTC
TTTTCAAGATTGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAA
ACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACTTATTCTTCTCAT
TAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
GTCTAAGTTCGTGCCTCAAATGATCCAAAAATGGATTCTAGTATTGATCTTCACTCATTTTGCGA
TTACGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCGTGGA
AATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCATAAATAAGACGTGCATCAAT
TCTCATAATAGTCCCCATTTTTTTCAGGAATGGGAACCAAAAACACATTCCTGTCATTAGGATAC
AAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTTCACCGTTTTTAATAGAATCAAAG
TTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCACGATTAGCAC
CATAAACTTAGTTTTCTCATTAAGATACACGATATTGGTCCTTTGGTTTCTTAAGAAAGGCTTTT
TTCCCACCAATTTTTGCAAATTCTAAGTTCATGCCT
Found at i:1091824 original size:30 final size:30
Alignment explanation
Indices: 1091790--1091869 Score: 126
Period size: 30 Copynumber: 2.7 Consensus size: 30
1091780 TTCTCTCCTC
* *
1091790 CTCCTGTCATC-CCTCCTCTCTCTATTATCT
1 CTCCTGTC-TCTCCTCCTATCTCTACTATCT
1091820 CTCCTGTCTCTCCTCCTATCTCTACTATCT
1 CTCCTGTCTCTCCTCCTATCTCTACTATCT
1091850 CTCCTGTCTCTCCTCCTATC
1 CTCCTGTCTCTCCTCCTATC
1091870 ATCCCTCCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 2 0.04
30 45 0.96
ACGTcount: A:0.09, C:0.45, G:0.04, T:0.42
Consensus pattern (30 bp):
CTCCTGTCTCTCCTCCTATCTCTACTATCT
Found at i:1091841 original size:21 final size:21
Alignment explanation
Indices: 1091815--1091854 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1091805 CTCTCTCTAT
* *
1091815 TATCTCTCCTGTCTCTCCTCC
1 TATCTCTACTATCTCTCCTCC
1091836 TATCTCTACTATCTCTCCT
1 TATCTCTACTATCTCTCCT
1091855 GTCTCTCCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.42, G:0.03, T:0.45
Consensus pattern (21 bp):
TATCTCTACTATCTCTCCTCC
Found at i:1097656 original size:951 final size:950
Alignment explanation
Indices: 1093502--1101531 Score: 10678
Period size: 951 Copynumber: 8.5 Consensus size: 950
1093492 TTGGTTTTCA
* * * * *
1093502 TCATGCCTCAAATGATCCAAACAAGGATTCTGGTCTTGATCTTCACTCATTTTGCGATTAC-GCA
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATT-CGGCA
* * * * * * *
1093566 CTATAAACACATTGTCCTCATTACGTTAAATGATATTGATGATTTTTTTTTGCGTGAAAATATTT
65 CTATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* *
1093631 TCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCATGCATCAATTCTCATA
130 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATA
* * * *
1093696 ATAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCGTTAGGGTACACGACAAT
195 ACAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATT
* * * *
1093761 GAGGCTTTCGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
260 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * *
1093826 TTAAATAAGACAAACTTGAATACACATACTCTACGCCCCTT-TTTCCAAGATTAGGCACCATAAT
325 TTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCTTTTCATGATTAGGCACCATAAA
1093890 CTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTTTGGTTTCTTAAGAAAGGCTTTTTTCC
389 CTTAGTCTTCTCATTAAGATACACGATATTGGTGC--TTTGGTTTCTTAAGAAAGGCTTTTTTCC
* * * * *
1093955 CACCAATTTTTGTAAGGCCTAAGTTCATGCCTCAAATGATCCAAACATGGATTCTAGCATTGATC
452 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATC
* ** ** * * *
1094020 TTCACTCATTTTGCAATTACACACTAT-AACCACAATCTCCTCATTAGGTTAAATGATATTGATG
517 TTCATTCATTTTGTGATTAGGCACTATGAA-CACATTCTCCTCTTTAGGTTAAACGATATTGATG
1094084 ATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCC-T----T-AAA----AT--C----
581 ATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAA
*
1094133 A-AA--GTGCATCAATTCTCATAACAGTCCTCATTCTTTTTAGGATTGGGAACCAAAAACACATT
646 ATAAGCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATT
* *
1094195 CCCGTTATTAGGATACAAGACATTGATGCTTTGGAGTTGCAAGAAAAGCTTTTTTTTCCACCATT
711 CCCGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCATT
* *
1094260 TTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACTAACATGAACACACATACTCTACCCCATTC
776 TTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTC
* *
1094325 TCTTCACGATTAGGCACCATAAACTTAGTCTTCT-ATTTAGGATACACGATATTGGTGCTCTGGT
841 TTTTCACGATTAGGCACCATAAACTTAGTCTTCTCA-TTAGGATACACGATATTGGTGCTTTGGT
* * * * *
1094389 TTCTTAAGAAA-GGTTTTTTTCCACCAATTTTTGTAAAGTGTATGT
905 TTCTTAAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * * *
1094434 TCGTGCCTCAAATGATCCAAAC-ATTGATTCTAGCATTGATCTTCACTCATTTTGGGATTAC-GC
1 TCATGCCTCAAATGATCCAAACAAGT-ATTCTAGTATTGATCTTCATTCATTTTGTGATT-CGGC
* * **
1094497 ACTATAACCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCGTAAAAATCTT
64 ACTATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * *
1094562 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAG-CGTGCATCAATTCTCAT
129 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCAT
* * * * *
1094626 AACAGTCCCCATTCATTTCAAGATTGGGAACCAAAAACAGATTCCCTTCATTAGGACAAATGACA
194 AACAGT-CCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACA
* * * ***** * * *
1094691 TTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTTTGTTGTTTTAGATAAAATCAAAGTTTGCC
258 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* *
1094756 TCTGAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGTCACCATAA
323 TCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAA
** *
1094821 ACTTTTTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCCC
388 ACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCC
*
1094886 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAAGATTCTAGTATTGATCT
453 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATCT
*
1094951 TCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTTGGTTAAACGATATTGATGAT
518 TCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATGAT
1095016 TTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAAT
583 TTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAAT
*
1095081 AAAGCGTGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGATTGGGAACCAAAAACACATTC
648 -AAGCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATTC
1095146 CCGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCA-TT
712 CCGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCATTT
* *
1095210 TTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCCACCCCATTCT
777 TTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCT
* *
1095275 TTTCACGATCAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTT
842 TTTCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTT
* * *
1095340 TTTAAGAAACG-TTTTTTCCCACAAATTCTTGCAAATTCTATGT
907 CTTAAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * * * * * *
1095383 TCATCCCTCAAATGAGCTAAACAAGTATTCTAGTAGTAATCTTCATGCATTTTGTGATTCGGGAA
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATTCGGCAC
* * * * *
1095448 AATAAGCACATTCTCCTCATTAGGATAATTGATATTGATGATTTACCTTTGCATGGAAATCTTTT
66 TATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * *
1095513 CCTTGCTCTATTTTCCTTAAAACCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATAA
131 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATAA
* * * * *
1095578 CAGTCCCATTCTTTTCAAGATTAGGAACCAAAACCACATTCCCTTCATTAGGACACATGACATTT
196 CAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
* * * * * * *
1095643 ATGATTTGGAGTCACAAGAAAAGCTTTTATTTCAACCATTTTTGATAGAATCGAAGTTTGCCTCT
261 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
1095708 GAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGTCACCATAAACT
326 TAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACT
** * *
1095773 TTTTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAATGCCTTTTTTCCCACC
391 TAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
*
1095838 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAAGATTCTAGTATTGATCTTCA
456 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATCTTCA
*
1095903 TTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTTGGTTAAACGATATTGATGATTTT
521 TTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATGATTTT
*
1095968 CTTTTGCGTGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAA
586 CTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAAT-AA
*
1096033 GCGTGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCCG
650 GCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCCG
*
1096098 GCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGC-TTTTTTTCCACCA-TTTTA
715 TCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCATTTTTA
* * *
1096161 ATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCCACCCCATTCTTTT
780 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* *
1096226 CACGATCAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTT
845 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* *
1096291 AAGAAACG-TTTTTTCCCACAAATTTGTGCAAATTCTATGT
910 AAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * * * *
1096331 TCATGCCTCAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGAA
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATTCGGCAC
* * * * * *
1096396 AATAAGCACATTCTCCTCATTAAGATAATTGATATTGATGATTTACCTTTGCATGGAAATCTTTT
66 TATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * * *
1096461 CCTTGCTCTATTTTCCTTAAAACCAAAGTTCATCCCTTAAATAAGACGTGCATCAATTCTCATAA
131 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATAA
* * * * *
1096526 CAGTCCCATTCTTTTCAAGATTAGGAACCAAAACCACATTCCCTTCATTAGGACACATGACATTT
196 CAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
* * * * * *
1096591 ATGATTTGGAGTCACAAGAAAAGCTTTTATTTCAACCATTTTTGATAGAATCGAAGTTTGTCTCT
261 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
1096656 TAAATAAGACAAACACGAATACACATAATCTACCCCATTCTTTTCATGATTAGGCACCATAAACT
326 TAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACT
* * * *
1096721 TAGTTTTCTCATTAGGATACACGATATTGGAGCATTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
391 TAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
* *
1096786 AATTTTTGTAAAGTCTAAGCTCAG-GCCTCAAATGATCCTAACAAGGATTCTAGTATTGATCTTC
456 AATTTTTGTAAAGTCTAAGTTC-GTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATCTTC
* *
1096850 ATTCATTTTGCGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTTATGATTT
520 ATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATGATTT
* *
1096915 TGTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCAAAGTTCATCCCATAAATAG
585 TCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATA-
* * *
1096980 AGCGTGCATCAATTCTCATAACAGTCCCCAATCATTTTCGGATTGGGAACCAAAAACACATTCCC
649 AGCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCC
* * *
1097045 ATCATTAGGATACAAGACATTGATGCTTTGGTGCTGCAATAAAAGCTTTTTTTTTCCACCATTTT
714 GTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGC-TTTTTTTTCCACCATTTT
1097110 TAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTT
778 TAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTT
* * *
1097175 TTCACAATTAGGCCCCATAAACTGAGTCTTCTCATTAGGATACACGATATTGGT-CTTTTGGTTT
843 TTCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGC-TTTGGTTT
* * * *
1097239 CATAAGAAACGTTTTTTTCCCACAAATTCTTGCAAATTCTATGT
907 CTTAAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * * * *
1097283 TCTTGCCTCAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGAC
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATTCGGCAC
* * *
1097348 AATAAGCACATTCTCCTCATTAGGATT-AATGATATTGATGA-TTACCTTTGCATGGAAATCTTT
66 TATAAGCACATTCTCCTCATTAGG-TTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * *
1097411 TCGTTGCTCTATTTTCCTTAAAACCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATA
130 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATA
* * * *
1097476 ACAGTCCCAATCTTTTCAAAATTAGGAACCAAAAACACATTCCCCTCATTAGGATACACGACATT
195 ACAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATT
* * * * *
1097541 TATGTTTTGGAGTCACAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTT
260 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * *
1097606 TTAAATAAGACAAATATGAATACATATACTCTACGCCC-TTTTTTTCATGATTAGGCACCATAAA
325 TTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCTTTTCATGATTAGGCACCATAAA
* * *
1097670 CTTAGTCTTCTCTTTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAATGCCTTTTTTCCCA
389 CTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCA
* *
1097735 CCAATTTTTGTAAAGTCTAAGTTTGTGCATCAAATGATCCAAACAAGGATTCTAGTATTGATCTT
454 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATCTT
*
1097800 CATTCATTTTGTGATTAGGCACTATGAACACATTCTTCTCTTTAGGTTAAACGATATTGATGATT
519 CATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATGATT
* * *
1097865 TTCTTTTGTGTGGAAATCTTTTCTTTGCCCCATTTTCCTTAAAATTAAAGTTCATCCCATAAATA
584 TTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATA
*** * * * * * * *
1097930 AGGCACACATCAATTCTCACAACAGTCCCCATTATTTTCAAGATTGGGAGCCAGAAACACATTCG
649 A-GCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCC
* * * * * *
1097995 CTTCATTGGGATACACGACAATGATGCTTTGGTGTTGCAAAAAAAGCTTTTCTTTCCACCATTTT
713 CGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCATTTT
* *
1098060 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACGCCAATT-T
778 TAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCT
** * * * *
1098124 TTTCTTGATTAGGGACCATAAAATTAGT-TTCCTCATTAAGATACACGATATTGGTGCCTTGGTT
842 TTTCACGATTAGGCACCATAAACTTAGTCTT-CTCATTAGGATACACGATATTGGTGCTTTGGTT
* * * *
1098188 TCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
906 TCTTAAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * * * *
1098233 TCGTGCCTCAAATGATCCAAAC-ATTGATTCTAGCATTGATCTTCACTCTTTTTGCGATTAC-GC
1 TCATGCCTCAAATGATCCAAACAAGT-ATTCTAGTATTGATCTTCATTCATTTTGTGATT-CGGC
* * * * * ** *
1098296 ACTACAACCATATT-TCCCTCATTAGGTTAAACGGTATTGATTTTTTTCTTTTGCTTGGAAATCT
64 ACTATAAGCACATTCT-CCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * *
1098360 TTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCATAAATAAGGCGTGGATCAATTCTCA
128 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCA
* * * *
1098425 TATCAGTCCCCATTCATTCCAAGATTGGGAACCAAAAACGCATTCCCTTCATTAGGATACACGAC
193 TAACAGT-CCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGAC
* * *** * * *
1098490 ATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTTGCTGTTTTAGATAAAATCAAAGTTTGT
257 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
** * *
1098555 CTCTTAAATAAGATGAACATGATTACACATACTCTACCCCATTCTTTTCATGATTAGGCACCGTA
322 CTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATA
* * * *
1098620 AACTTATTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTTTTAAGAAAGGCTTTTTTCC
387 AACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCC
* * * * *
1098685 CACCAATTTTAGTAAAGGCTAGGTTCGTGCCTCAAATGATCCAAACATGGATTCTGGTATTGATC
452 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATC
* ** * * * * * *
1098750 TTCACTCATTTTGCAATTACGCACTATAAACACATTCTCCTCATTAGGTTAAAAGGTATTGACGA
517 TTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATGA
* * * * * * *
1098815 TTTCCTTTTGCGTGAAAATATTTTCTTTGCCCTATTTTCCTTCAAATCAATGTTCATGCCTTAAA
582 TTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAA
** ** * *
1098880 TAAGGCACGCATCAATTCTCATAGTAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
647 TAA-GCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATT
* * * * ** * * **
1098945 CCCTTCATTAGGATAGACGACAATGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACTGTT
711 CCCGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCATT
* * * * ** *
1099010 TTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATACATATACTCTATGCCATTT
776 TTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTC
* * *
1099075 TTTTCATGATTAGGCACCATAAACTTAGTCTTCTCTTTAAGATACACGATATTGGTGCTTTGGTT
841 TTTTCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTT
* * * *
1099140 TCTTAAG-AATGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
906 TCTTAAGAAACG-CTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
** * * *
1099185 TTGTGCATCAAATGATCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAC
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATTCGGCAC
* * * *
1099250 TATGAA-CACATTCTACTCTTTAGGTTAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTT
66 TAT-AAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* *
1099314 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAA-AGCGTGCATCAATTCTCAT
130 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CATGCATCAATTCTCAT
* * * * *
1099378 AACAGTCCCCATTATTTTTAAGATTGGGAACCAAAAACACCTTCCCGTCATTAGGATACAAGACA
194 AACAGT-CCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACA
** * *
1099443 TTGATGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTAATAGAATCAAAGTTTGTC
258 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * *
1099507 TCTTAAATAAGACAAATATGAATACACATACTCTACCCCATTCTTTTCACGATTAGGCACCACAA
323 TCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAA
* * * *
1099572 ACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTTTTAAGAAACG-TTTTTTCCC
388 ACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCC
* * * * * * * * * * * *
1099636 ACAAATTCTTGCAAATTCTATGTTCATCCCTCAAATGAGCTAAACAAGTATTCTAGTAGTAATCT
453 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATCT
* * * * * *
1099701 TCATGCATTTTGTGA-TACGGGACAAT-AAGCACATTCTCCTCGTTAGGATAAAGGATATTGATG
518 TCATTCATTTTGTGATTA-GGCACTATGAA-CACATTCTCCTCTTTAGGTTAAACGATATTGATG
* * * * * * *
1099764 ATTTACCTTTGCATGGAAATCTTTTCCTTACTCTATTTTCCTTAAAACCAAAGTTCATCCCATAA
581 ATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAA
* * * *
1099829 ATAAGGCGTGCATCAATTCTCATAACAGTCCCCATTCATTTCAAGTTTGGGAACCAAAAACACAT
646 ATAA-GCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACAT
* * * * * *
1099894 TCCCTTCATTAAGATA-AATGACATTAATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTTT---G
710 TCCCGTCATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGC-TTT-TTTTTCCAC
* * * *
1099955 C-TGTTTTAGATAAAATCAAAGTTTGTCTCTGAAATAAGAGAAACATGAATACGCATACTCTACC
772 CAT-TTTTA-ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACC
* * *
1100019 CCATTCTTTTCACGATTAGGCTCCATAAACTTATTCTTCTCATTATGATACACGATATTGGTGCT
835 CCATTCTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCT
* * * * *
1100084 TTGGTATCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
900 TTGGTTTCTTAAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * ** * * * *
1100135 TCGTTCCTCAAATAATCCAAACGTGGATTCTGGTATTGATCTTCACTCATTTTGCGATTAC-GCA
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATT-CGGCA
* * * *
1100199 CTATAAACACATTCTCCTCATTAGGTTAAAGGATATTGATAATTTTCTTTTGCGTGGAAATCTTT
65 CTATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * * * *
1100264 TCTTTGCCCTATTTTCCCTAAAATTAATGCTCATCCCTTAAATAGGGCACGCATCAATTCTCAAA
130 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATA
** * * *
1100329 ATGGTGCCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACACGATAA
195 ACAGT-CCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAT
* * * *
1100394 TGACGCTTTGGGGTTGC-CAA-AAAAGCTTTTCTTTCCACCGTTTTTGATCGAATCAAAGTTGGT
259 TGATGCTTTGGTG-T-CACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
1100457 CTCTTAAATAAGGCAAACTTGAATACACATACTCTACACCC-TTTTTTTCATGATTAGGCACTAT
322 CTCTTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCTTTTCATGATTAGGCACCAT
1100521 AAACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGC-TTTTTC
386 AAACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
1100585 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGAT
451 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGAT
* * *
1100650 CTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCTTTTTTAGGTTAAACGATATTGTTG
516 CTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATG
* * *
1100715 ATTTTCTTTTGCGTGGAAATCTTTTCTTTTCCCTATTTCCCTTAAAATCAAAGTTCATCCCCTAA
581 ATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAA
* * * *
1100780 ATAAAGCGTGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGGTTGGGAATCAAAATCACAT
646 AT-AAGCGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACAT
*
1100845 TCCCGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAACGCTTTTTTTTCCACCAT
710 TCCCGTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCAT
* * * * *
1100910 TTTTAAAAGAATTAAAGTTTGTCTCTTACATAAGACAAACATAAATACACATAGTCTACCCCATT
775 TTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATT
* * * *
1100975 CTATTCACAATTAGGCACCATAAACTTTGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGT
840 CTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGT
* * * *
1101040 TTCTTAAGGAACGTTTTTTTCCCACAAATTCTTGCAAATTCTATGT
905 TTCTTAAGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
* * * * *
1101086 TCATGCCTCAAATGAGCTAAACAAGTATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGAC
1 TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATTCGGCAC
* * * * * * *
1101151 AATAAGGACATTCTCCTCATTAGGATAAATGAAATTGATGATTTACCTTTGAATGGAAATCTTTT
66 TATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * * ** * *
1101216 CCTTACTCTATTTTCGATAAAACCAAAGTTCATCCCTTAAATAAGACATGCATAAATTCTCATAA
131 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATAA
* * * * *
1101281 TATTCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTACCTTCATTAGGATACATGACATTG
196 CAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
*
1101346 ATGCTTTGGTGTCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
261 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
1101411 TAAATAAGACAAACAT--A-A-ATATACTCTACCCTATTCTTTTCATGATTAGGCACCATAAACT
326 TAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACT
* * *
1101472 TAGTCTTCTCTTTAGGATACACGATATTGGTGCTTTGGTTTCTTTAGAAAGGCTTTTTTC
391 TAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
1101532 AAAAATAGAA
Statistics
Matches: 6320, Mismatches: 691, Indels: 159
0.88 0.10 0.02
Matches are distributed among these distances:
930 179 0.03
931 30 0.00
932 347 0.05
935 1 0.00
936 3 0.00
940 2 0.00
942 1 0.00
945 2 0.00
946 87 0.01
947 8 0.00
948 911 0.14
949 861 0.14
950 1171 0.19
951 1658 0.26
952 1051 0.17
953 8 0.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.36
Consensus pattern (950 bp):
TCATGCCTCAAATGATCCAAACAAGTATTCTAGTATTGATCTTCATTCATTTTGTGATTCGGCAC
TATAAGCACATTCTCCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCAATTCTCATAA
CAGTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCATGATTAGGCACCATAAACT
TAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGGATTCTAGTATTGATCTTCA
TTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTAGGTTAAACGATATTGATGATTTT
CTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAG
CGTGCATCAATTCTCATAACAGTCCCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCCGT
CATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCATTTTTAA
TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTC
ACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTA
AGAAACGCTTTTTTCCCACAAATTTTTGCAAAGTCTATGT
Found at i:1098135 original size:476 final size:475
Alignment explanation
Indices: 1094136--1101531 Score: 9565
Period size: 476 Copynumber: 15.6 Consensus size: 475
1094126 TAAAATCAAA
* * *
1094136 GTGCATCAATTCTCATAACAGTCCTCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCCGTT
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC-TT
* * *
1094201 -ATTAGGATACAAGACATTGATGCTTTGGAGTTGCAAGAAAAGCTTTTTTTTCCACCATTTTTAA
65 CATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * *
1094265 TAGAATCAAAGTTTGTCTCTTAAATAAGACTAACATGAACACACATACTCTACCCCATTCTCTTC
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTC
* *
1094330 ACGATTAGGCACCATAAACTTAGTCTTCT-ATTTAGGATACACGATATTGGTGCTCTGGTTTCTT
195 ATGATTAGGCACCATAAACTTAGTCTTCTCA-TTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * * * *
1094394 AAGAAAG-GTTTTTTTCCACCAATTTTTGTAAAGTGTATGTTCGTGCCTCAAATGATCCAAACAT
259 AAGAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAA
* * * * *
1094458 TGATTCTAGCATTGATCTTCACTCATTTTGGGATTACGCACTATAACCACATTCTCCTCATTAGG
324 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGG
* ** *
1094523 TTAAATGATATTGATGATTTTCTTTTGCGTAAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATC
388 TTAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
1094588 AAAGTTCATCCCATAAATAA-GC
453 AAAGTTCATCCCATAAATAAGGC
* *
1094610 GTGCATCAATTCTCATAACAGTCCCCATTCATTTCAAGATTGGGAACCAAAAACAGATTCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * * ****** *
1094675 ATTAGGACA-AATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTTTGTTGTTTTAGA
66 ATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * *
1094739 TAAAATCAAAGTTTGCCTCTGAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTC
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTC
* ** *
1094804 ATGATTAGTCACCATAAACTTTTTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTA
195 ATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTA
* * *
1094869 AGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAA
260 AGAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAG
* *
1094934 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTTGGT
325 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGT
1094999 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
389 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
*
1095064 AAGTTCATCCCATAAATAAAGC
454 AAGTTCATCCCATAAATAAGGC
* * * *
1095086 GTGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCCGTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* *
1095151 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCA-TTTTAAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
1095215 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCCACCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* * * *
1095280 CGATCAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTTTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * * * * * * * * * *
1095345 GAAA-CGTTTTTTCCCACAAATTCTTGCAAATTCTATGTTCATCCCTCAAATGAGCTAAACAAGT
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
* * * * * ** *
1095409 ATTCTAGTAGTAATCTTCATGCATTTTGTGATTCGGGAAAATAAGCACATTCTCCTCATTAGGAT
326 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGTT
** * * * * * *
1095474 AATTGATATTGATGATTTACCTTTGCATGGAAATCTTTTCCTTGCTCTATTTTCCTTAAAACCAA
390 AAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* *
1095539 AGTTCATCCCTTAAATAAGAC
455 AGTTCATCCCATAAATAAGGC
* * *
1095560 ATGCATCAATTCTCATAACAGT-CCCATTCTTTTCAAGATTAGGAACCAAAACCACATTCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * * * ** * *
1095624 ATTAGGACACATGACATTTATGATTTGGAGTCACAAGAAAAGCTTTTATTTCAACCATTTTTGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
1095689 AGAATCGAAGTTTGCCTCTGAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* ** *
1095754 TGATTAGTCACCATAAACTTTTTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* *
1095819 GAATGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAAG
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
* *
1095884 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCTTTTGGTT
326 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGTT
*
1095949 AAACGATATTGATGATTTTCTTTTGCGTGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAA
390 AAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
*
1096014 AGTTCATCCCATAAATAAAGC
455 AGTTCATCCCATAAATAAGGC
* * * **
1096035 GTGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGATTGGGAACCAAAAACACATTCCCGGC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
*
1096100 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTCCACCA-TTTTAAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
1096163 AGAATCAATGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCCACCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* * *
1096228 CGATCAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * * * * * * * * *
1096293 GAAA-CGTTTTTTCCCACAAATTTGTGCAAATTCTATGTTCATGCCTCAAATGAGCTAAACAAGT
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
* * * * ** * *
1096357 ATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGAAAATAAGCACATTCTCCTCATTAAGAT
326 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGTT
** * * * * * *
1096422 AATTGATATTGATGATTTACCTTTGCATGGAAATCTTTTCCTTGCTCTATTTTCCTTAAAACCAA
390 AAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* *
1096487 AGTTCATCCCTTAAATAAGAC
455 AGTTCATCCCATAAATAAGGC
* *
1096508 GTGCATCAATTCTCATAACAGT-CCCATTCTTTTCAAGATTAGGAACCAAAACCACATTCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * * * ** * *
1096572 ATTAGGACACATGACATTTATGATTTGGAGTCACAAGAAAAGCTTTTATTTCAACCATTTTTGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
1096637 AGAATCGAAGTTTGTCTCTTAAATAAGACAAACACGAATACACATAATCTACCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* * *
1096702 TGATTAGGCACCATAAACTTAGTTTTCTCATTAGGATACACGATATTGGAGCATTGGTTTCTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * *
1096767 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCAG-GCCTCAAATGATCCTAACAAG
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAAATGATCCAAACAAG
* *
1096831 GATTCTAGTATTGATCTTCATTCATTTTGCGATTAGGCACTATGAACACATTCTCCTCTTTAGGT
325 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGT
* * *
1096896 TAAACGATATTTATGATTTTGTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCA
389 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
1096961 AAGTTCATCCCATAAAT-AGAGC
454 AAGTTCATCCCATAAATAAG-GC
* * *
1096983 GTGCATCAATTCTCATAACAGTCCCCAATCATTTTC-GGATTGGGAACCAAAAACACATTCCCAT
1 GTGCATCAATTCTCATAACAGTCCCCATTC-TTTTCAAGATTGGGAACCAAAAACACATTCCCTT
* * * *
1097047 CATTAGGATACAAGACATTGATGCTTTGGTGCTGCAATAAAAGCTTTTTTTTTCCACCATTTTTA
65 CATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGC-TTTTCTTTCCACCATTTTTG
1097112 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
129 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
** * * *
1097177 CACAATTAGGCCCCATAAACTGAGTCTTCTCATTAGGATACACGATATTGGT-CTTTTGGTTTCA
194 CATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGC-TTTGGTTTCT
* * * * * * * * *
1097241 TAAGAAA-CGTTTTTTTCCCACAAATTCTTGCAAATTCTATGTTCTTGCCTCAAATGAGCTAAAC
258 TAAGAAAGC-CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAAC
* * * * * *
1097305 AAGTATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGACAATAAGCACATTCTCCTCATTA
322 AAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTA
* * * * * *
1097370 GGATT-AATGATATTGATGA-TTACCTTTGCATGGAAATCTTTTCGTTGCTCTATTTTCCTTAAA
386 GG-TTAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * *
1097433 ACCAAAGTTCATCCCTTAAATAAGAC
450 ATCAAAGTTCATCCCATAAATAAGGC
* * * * *
1097459 ATGCATCAATTCTCATAACAGT-CCCAATCTTTTCAAAATTAGGAACCAAAAACACATTCCCCTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * * ** * *
1097523 ATTAGGATACACGACATTTATGTTTTGGAGTCACAGGAAAAGCTTTTCTTTCCACCGTTTTTGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * *
1097588 AGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATACATATACTCTACGCCC-TTTTTTTC
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCTTTTC
* *
1097652 ATGATTAGGCACCATAAACTTAGTCTTCTCTTTAAGATACACGATATTGGTGCTTTGGTTTCTTA
195 ATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTA
* * *
1097717 AGAATGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCATCAAATGATCCAAACAAG
260 AGAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAG
* *
1097782 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTTCTCTTTAGGT
325 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGT
* * *
1097847 TAAACGATATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCCATTTTCCTTAAAATTA
389 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
1097912 AAGTTCATCCCATAAATAAGGC
454 AAGTTCATCCCATAAATAAGGC
*** * * * * *
1097934 ACACATCAATTCTCACAACAGTCCCCATTATTTTCAAGATTGGGAGCCAGAAACACATTCGCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * *
1097999 ATTGGGATACACGACAATGATGCTTTGGTGTTGCAAAAAAAGCTTTTCTTTCCACCATTTTTGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
*
1098064 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACGCCAATT-TTTTC
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCTTTTC
* * * * *
1098128 TTGATTAGGGACCATAAAATTAGT-TTCCTCATTAAGATACACGATATTGGTGCCTTGGTTTCTT
195 ATGATTAGGCACCATAAACTTAGTCTT-CTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* *
1098192 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAT
259 AAGAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAA
* * * * * * * *
1098257 TGATTCTAGCATTGATCTTCACTCTTTTTGCGATTACGCACTACAAC-CATATTTCCCTCATTAG
324 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAACACAT-TCT-CCTCATTAG
* ** * *
1098321 GTTAAACGGTATTGATTTTTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCATAAAAT
387 GTTAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1098386 CAAAGTTCATCCCATAAATAAGGC
452 CAAAGTTCATCCCATAAATAAGGC
* * * * *
1098410 GTGGATCAATTCTCATATCAGTCCCCATTCATTCCAAGATTGGGAACCAAAAACGCATTCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * *** ** *
1098475 ATTAGGATACACGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTTGCTGTTTTAGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* ** *
1098540 AAAATCAAAGTTTGTCTCTTAAATAAGATGAACATGATTACACATACTCTACCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* * * *
1098605 TGATTAGGCACCGTAAACTTATTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTTTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * * * *
1098670 GAAAGGCTTTTTTCCCACCAATTTTAGTAAAGGCTAGGTTCGTGCCTCAAATGATCCAAACATGG
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
* * ** *
1098735 ATTCTGGTATTGATCTTCACTCATTTTGCAATTACGCACTATAAACACATTCTCCTCATTAGGTT
326 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGTT
* * * * * * *
1098800 AAAAGGTATTGACGATTTCCTTTTGCGTGAAAATATTTTCTTTGCCCTATTTTCCTTCAAATCAA
390 AAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
1098865 TGTTCATGCCTTAAATAAGGC
455 AGTTCATCCCATAAATAAGGC
** **
1098886 ACGCATCAATTCTCATAGTAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * ** * **
1098951 ATTAGGATAGACGACAATGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACTGTTTTTGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * ** *
1099016 AGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATACATATACTCTATGCCATTTTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* *
1099081 TGATTAGGCACCATAAACTTAGTCTTCTCTTTAAGATACACGATATTGGTGCTTTGGTTTCTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * *
1099146 GAATGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCATCAAATGATCCAAACAAGG
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
* *
1099211 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTACTCTTTAGGTT
326 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGTT
1099276 AAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
390 AAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
*
1099341 AGTTCATCCCATAAATAAAGC
455 AGTTCATCCCATAAATAAGGC
* * * *
1099362 GTGCATCAATTCTCATAACAGTCCCCATTATTTTTAAGATTGGGAACCAAAAACACCTTCCCGTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
*
1099427 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTAAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
*
1099491 AGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACACATACTCTACCCCATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* * * *
1099556 CGATTAGGCACCACAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTTTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * * * * * * * * * *
1099621 GAAA-CGTTTTTTCCCACAAATTCTTGCAAATTCTATGTTCATCCCTCAAATGAGCTAAACAAGT
261 GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
* * * * * * *
1099685 ATTCTAGTAGTAATCTTCATGCATTTTGTGA-TACGGGACAATAAGCACATTCTCCTCGTTAGGA
326 ATTCTAGTATTGATCTTCATTCATTTTGTGATTA-GGCACTATAA-CACATTCTCCTCATTAGGT
* * * * * * * *
1099749 TAAAGGATATTGATGATTTACCTTTGCATGGAAATCTTTTCCTTACTCTATTTTCCTTAAAACCA
389 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
1099814 AAGTTCATCCCATAAATAAGGC
454 AAGTTCATCCCATAAATAAGGC
* *
1099836 GTGCATCAATTCTCATAACAGTCCCCATTCATTTCAAGTTTGGGAACCAAAAACACATTCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * * * *** ** *
1099901 ATTAAGATA-AATGACATTAATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTTTGCTGTTTTAGA
66 ATTAGGATACAA-GACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * * *
1099965 TAAAATCAAAGTTTGTCTCTGAAATAAGAGAAACATGAATACGCATACTCTACCCCATTCTTTTC
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTC
* * * * *
1100030 ACGATTAGGCTCCATAAACTTATTCTTCTCATTATGATACACGATATTGGTGCTTTGGTATCTTA
195 ATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTA
* * * **
1100095 AGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATAATCCAAACGTG
260 AGAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAG
* * * *
1100160 GATTCTGGTATTGATCTTCACTCATTTTGCGATTACGCACTATAAACACATTCTCCTCATTAGGT
325 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGT
* * * *
1100225 TAAAGGATATTGATAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCCTAAAATTA
389 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
1100290 ATGCTCATCCCTTAAATAGGGC
454 AAGTTCATCCCATAAATAAGGC
** * ** * *
1100312 ACGCATCAATTCTCAAAATGGTGCCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * * * *
1100377 ATTAGGATACACGATAATGACGCTTTGGGGTTGCCAA-AAAAGCTTTTCTTTCCACCGTTTTTGA
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTG-CAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * * * *
1100441 TCGAATCAAAGTTGGTCTCTTAAATAAGGCAAACTTGAATACACATACTCTACACCC-TTTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTAC-CCCATTCTTTT
* *
1100505 CATGATTAGGCACTATAAACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTT
194 CATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
*
1100570 AAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAA
259 AAGAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAA
* **
1100634 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCTTTTTTAGG
324 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* * *
1100699 TTAAACGATATTGTTGATTTTCTTTTGCGTGGAAATCTTTTCTTTTCCCTATTTCCCTTAAAATC
388 TTAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* *
1100764 AAAGTTCATCCCCTAAATAAAGC
453 AAAGTTCATCCCATAAATAAGGC
* * * * * * *
1100787 GTGCATCAATTCTCATAACAGTCTCCATTCTTTTTAGGGTTGGGAATCAAAATCACATTCCCGTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* * * *
1100852 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAACGCTTTTTTTTCCACCATTTTTAAA
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * *
1100917 AGAATTAAAGTTTGTCTCTTACATAAGACAAACATAAATACACATAGTCTACCCCATTCTATTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
** * *
1100982 CAATTAGGCACCATAAACTTTGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTTAA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* * * * * * * * * *
1101047 GGAA-CGTTTTTTTCCCACAAATTCTTGCAAATTCTATGTTCATGCCTCAAATGAGCTAAACAAG
261 GAAAGC-CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAG
* * * * * * * *
1101111 TATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGACAATAAGGACATTCTCCTCATTAGGA
325 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGT
* * * * ** * * * ** *
1101176 TAAATGAAATTGATGATTTACCTTTGAATGGAAATCTTTTCCTTACTCTATTTTCGATAAAACCA
389 TAAACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* *
1101241 AAGTTCATCCCTTAAATAAGAC
454 AAGTTCATCCCATAAATAAGGC
* * * * * *
1101263 ATGCATAAATTCTCATAATA-TTCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTACCTTC
1 GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
* *** *
1101327 ATTAGGATACATGACATTGATGCTTTGGTGTCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
66 ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
1101392 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT--A-A-ATATACTCTACCCTATTCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
* *
1101453 TGATTAGGCACCATAAACTTAGTCTTCTCTTTAGGATACACGATATTGGTGCTTTGGTTTCTTTA
196 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
*
1101518 GAAAGGCTTTTTTC
261 GAAAGCCTTTTTTC
1101532 AAAAATAGAA
Statistics
Matches: 5961, Mismatches: 901, Indels: 123
0.85 0.13 0.02
Matches are distributed among these distances:
471 89 0.01
472 78 0.01
473 304 0.05
474 1337 0.22
475 1664 0.28
476 2204 0.37
477 280 0.05
478 5 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (475 bp):
GTGCATCAATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
ATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTTCA
TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
GAAAGCCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAAGG
ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAACACATTCTCCTCATTAGGTTA
AACGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
GTTCATCCCATAAATAAGGC
Found at i:1101616 original size:150 final size:146
Alignment explanation
Indices: 1101390--1101681 Score: 467
Period size: 150 Copynumber: 2.0 Consensus size: 146
1101380 ACCGTTTTTG
* * *
1101390 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATATACTCTACCCTATTCTTTTCATG
1 ATAGAATCAAAGTTTGTCTCGTAAATAAGACAAACATAAACATACTCTACCCCATTCTTTTCATG
**
1101455 ATTAGGCACCATAAACTTAGTCTTCTCTTTAGGATACACGATATTGGTGCTTTGGTTTCTTTAGA
66 ATTAGGCACCATAAACTTAGTCTTCTAATTAGGATACACGATATTGGTGCTTTGGTTTCTTTAGA
1101520 AAGGCTTTTTTCAAAA
131 AAGGCTTTTTTCAAAA
* *
1101536 ATAGAATCAAAGTTTGTCTCGTAAGTAAGACAAACATGAATACACATGCTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCGTAAATAAGACAAACAT--A-A-ACATACTCTACCCCATTCTTTT
* *
1101601 CATGATTAGGCACCATAAACTTAGTCTTCTAATTAGGATATATGATATTGGTGCTTTGGTTTCTT
62 CATGATTAGGCACCATAAACTTAGTCTTCTAATTAGGATACACGATATTGGTGCTTTGGTTTCTT
1101666 TAGAAAGGCTTTTTTC
127 TAGAAAGGCTTTTTTC
1101682 CCACCAATAT
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
146 35 0.26
148 1 0.01
149 1 0.01
150 96 0.72
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (146 bp):
ATAGAATCAAAGTTTGTCTCGTAAATAAGACAAACATAAACATACTCTACCCCATTCTTTTCATG
ATTAGGCACCATAAACTTAGTCTTCTAATTAGGATACACGATATTGGTGCTTTGGTTTCTTTAGA
AAGGCTTTTTTCAAAA
Found at i:1101912 original size:621 final size:608
Alignment explanation
Indices: 1100917--1102141 Score: 1554
Period size: 621 Copynumber: 2.0 Consensus size: 608
1100907 CATTTTTAAA
* *
1100917 AGAATTAAAGTTTGTCTCTTACATAAGACAAACATAAATACACATAGTCTACCCCATTCTATTCA
1 AGAATCAAAGTTTGTCTCGTACATAAGACAAACATAAATACACATAGTCTACCCCATTCTATTCA
* *
1100982 CAATTAGGCACCATAAACTTTGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTTAA
66 CAATTAGGCACCATAAACTTAGTCTTCTAATTAGGATACACGATATTGGTCCTTTGGTTTCTTAA
* * * ** * *
1101047 GGAACGTTTTTTTCCCACAAATTCTTGCAAATTCTATGTTCATGCCTCAAATGAGCTAAACAAGT
131 GAAACGCTTTTTTCCCACAAATTCTTGCAAAGTCTAAATTCATGCCTCAAATGAGCCAAACAAGG
* * * * * *
1101112 ATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGGACAATAAGGACATTCTCCTCATTAGGAT
196 AGTCTAGTAATAATCTTCATTCAGTTTGTAATTAGGCACAATAAGCACATTCTCCTCATTAGGAT
* * * *
1101177 AAATGAAATTGATGATTTACCTTTGAATGGAAATCTTTTCCTTACTCTATTTTCGATAAAACCAA
261 AAATGAAATTGATGATTTACCTTTGAATGGAAATCTTCTCCTTACCCTATGTTCCATAAAACCAA
* * *
1101242 AGTTCATCCCTTAAATAAGACATGCATAAATTCTCATAATATTCCCATTCTTTTCAAGATTAGGA
326 AGTTCATCCCTTAAATAAGACA-GCATAAATACTCAAAATATCCCCATTCTTTTCAAGATTAGGA
* *
1101307 ACCAAAAACACATTACCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAAGAAAAGCTT
390 ACCAAAAACACATT-CC--C-------T---T--CATTAATGC-TTGGTGTCAAAAGAAAAGATT
*
1101372 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-A-A-ATATA
439 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAATACACATA
* *
1101434 CTCT-ACCCTATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCTTTAGGATACACGATA
504 CTCTAACCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCGTTAGGATACACGATA
* ** *
1101498 TTGGTGCTTTGGTTTCTTTAGAAAGGCTTTTTTCAAAAAT
569 TTGGTCCTTCCGTTTCTTAAGAAAGGCTTTTTTCAAAAAT
* *
1101538 AGAATCAAAGTTTGTCTCGTA-AGTAAGACAAACATGAATACACAT-GCTCTACCCCATTCTTTT
1 AGAATCAAAGTTTGTCTCGTACA-TAAGACAAACATAAATACACATAG-TCTACCCCATTCTATT
** * * *
1101601 CATGATTAGGCACCATAAACTTAGTCTTCTAATTAGGATATATGATATTGGTGCTTTGGTTTCTT
64 CACAATTAGGCACCATAAACTTAGTCTTCTAATTAGGATACACGATATTGGTCCTTTGGTTTCTT
* * * *
1101666 TAGAAAGGCTTTTTTCCCACCAATAT-TTGTAAAGTCTAAATTCATGCCTCAAATGAGCCAAAC-
129 AAGAAACGCTTTTTTCCCACAAAT-TCTTGCAAAGTCTAAATTCATGCCTCAAATGAGCCAAACA
* * ** *
1101729 AGGAGTCTAGTATTGATCTTCATTTC-GTTTGTAATTAGGCACTTTGAGCACATTCTCCTCATTA
193 AGGAGTCTAGTAATAATCTTCA-TTCAGTTTGTAATTAGGCACAATAAGCACATTCTCCTCATTA
* ** * * *
1101793 GGATAAATGATATTGATGATTT-CCTTTTGCGTGGAAATCTTCTCTTTTCCCTATGTTCCTTAAA
257 GGATAAATGAAATTGATGATTTACC-TTTGAATGGAAATCTTCTCCTTACCCTATGTTCCATAAA
* *
1101857 ATCAAAGTTCATCCCTTAAATAACGCACA-CATCAATACTCAAAATAGTCCCCATTCTTTTCAAG
321 ACCAAAGTTCATCCCTTAAATAA-G-ACAGCATAAATACTCAAAATA-TCCCCATTCTTTTCAAG
* * * *
1101921 ATTTGGAATCAAAAACACATTCCCTTCATTAATGCTTGGTGTCACAAGAAAATATTTTCTTTCCA
383 ATTAGGAACCAAAAACACATTCCCTTCATTAATGCTTGGTGTCAAAAGAAAAGATTTTCTTTCCA
* **
1101986 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGATGAACATGAATACACATACTCTAACC
448 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-AATACACATACTCTAACC
*
1102051 CCATTCTTTTCATGATTAGGCACCGTAAACTTAGTCTTCTCGTTAGGATACACGATATTGGTCCT
512 CCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCGTTAGGATACACGATATTGGTCCT
1102116 TCCGTTTCTTAAGAAAGGCTTTTTTC
577 TCCGTTTCTTAAGAAAGGCTTTTTTC
1102142 CCACAAATTT
Statistics
Matches: 526, Mismatches: 65, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
605 70 0.13
606 8 0.02
607 1 0.00
608 2 0.00
609 8 0.02
610 87 0.17
611 1 0.00
618 1 0.00
619 2 0.00
620 139 0.26
621 203 0.39
622 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (608 bp):
AGAATCAAAGTTTGTCTCGTACATAAGACAAACATAAATACACATAGTCTACCCCATTCTATTCA
CAATTAGGCACCATAAACTTAGTCTTCTAATTAGGATACACGATATTGGTCCTTTGGTTTCTTAA
GAAACGCTTTTTTCCCACAAATTCTTGCAAAGTCTAAATTCATGCCTCAAATGAGCCAAACAAGG
AGTCTAGTAATAATCTTCATTCAGTTTGTAATTAGGCACAATAAGCACATTCTCCTCATTAGGAT
AAATGAAATTGATGATTTACCTTTGAATGGAAATCTTCTCCTTACCCTATGTTCCATAAAACCAA
AGTTCATCCCTTAAATAAGACAGCATAAATACTCAAAATATCCCCATTCTTTTCAAGATTAGGAA
CCAAAAACACATTCCCTTCATTAATGCTTGGTGTCAAAAGAAAAGATTTTCTTTCCACCGTTTTT
GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAATACACATACTCTAACCCCATTCTTT
TCATGATTAGGCACCATAAACTTAGTCTTCTCGTTAGGATACACGATATTGGTCCTTCCGTTTCT
TAAGAAAGGCTTTTTTCAAAAAT
Found at i:1102605 original size:159 final size:158
Alignment explanation
Indices: 1102366--1105474 Score: 1156
Period size: 158 Copynumber: 19.7 Consensus size: 158
1102356 TGATAAAAAT
* * * * * * *
1102366 CCCATTCTTTTCAAGATTAGGAACCAAAAACAC-GTTCTCTTCATTAGGATACACGACATTGTTG
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAG-TCTCCTCATTAGGATACATGATATTGATG
* * ** * * *
1102430 TTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
65 CTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
*
1102495 ATAAGACAAACATGAATACACATACTCTAC
130 ATAAGACAAACATGAATTCACATACT-TAC
** * * * * * *
1102525 CCCATTCTTTTCACAATTAGGCACCATAAACTCAGTGTTCTAATTAGGATACATGATATTGGTCC
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
* * * * * * *
1102590 TTTGGTTTCTTAAGAAAGGCTTTT-TTCCCATCAATTTTTG-TAAAGTCTAAGCTCGTGC-CTCA
66 TTTGGTTTCTTAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAAAATCAAAGTTCGT-CTCTTA
* * * *
1102652 AATGAG-CTAAACAAGGATTCTA-GTA-TTGATC
129 AATAAGAC-AAACATGAATTC-ACATACTT-A-C
** * * * *
1102683 TTCATTACTTTT-GTGATTAGGCACCATGAACACATTCTCCTCATTAGGATAAATGATATTGATG
1 CCCATT-CTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG
* ** * * * *** * *
1102747 ATTTCCTTTTGCGT--GAAAATCTTTTCTTTTCC-CTATTTTCCTTAAAATCAAAGTTCATCCCT
65 CTTT-GGTTT-CTTAAGAAAAGCTTTTC-TTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCT
* ** * * **
1102809 TAAATAAGGCACGCATCAATTCTCA-AAATAGTC
127 TAAATAAGACAAACATGAATTCACATACTTA--C
* * * * * * *
1102842 CCCATTCTTTTCAAGATTTGGAATCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATG
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCC-TCATTAGGATACATGATATTGATG
* ** * * * *
1102906 C-TTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
65 CTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* *
1102970 ATAGGACAAACATGAATACACATACTCTAC
130 ATAAGACAAACATGAATTCACATACT-TAC
** * *
1103000 CCCATTCTTTTTCATGA-TAGGCACCATAAACTTAGTCTTCTCATTAGGATACATGATATTGGTG
1 CCCATTC-TTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG
* * * * * *
1103064 CTTTGGTTTCTTAAGAAAGGATTTT-TTTCCACCAATTTTTG-TAAAGTCTATGTTCGTGC-CTC
65 CTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTT
* * * * *
1103126 AAATGAGCCAAACAAGGATTCTA-GTA-TTGATC
128 AAATAAGACAAACATGAATTC-ACATACTT-A-C
** * * * * *
1103158 TTCATTACTTTT-GTGGTTAGGCACCATGAACACATTCTCCTCATTAGGATAAATGATATTGATG
1 CCCATT-CTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG
* * ** * * * *** * *
1103222 ATTT--TTTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCT
65 CTTTGGTTTCTT--AAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCT
* * * * * * *
1103284 TAAACAAGGCACACATCAATTCTCATAATAATC
127 TAAATAAGACAAACATGAATTCACATACTTA-C
* * * * * * * *
1103317 CCCATTCTTTTCAAGATTGGGAACCAGAAACACATTC-CCTTCATTAGGATACACGACATCGATG
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCC-TCATTAGGATACATGATATTGATG
** **
1103381 CTTTGGCATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
65 CTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* * *
1103446 AAAAGACAAACATGGATACACATACTCTAC
130 ATAAGACAAACATGAATTCACATACT-TAC
* * ** * * * *
1103476 CCCATTCTTTTCACGATTAGGCACCGTAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCC
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
* * * * * * * *
1103541 TTTGGTTTCTTAAGAAAGGCTTTT-TTCCCACAAATTTTTG-CAAATTCTAAGTTCATGC-CTCA
66 TTTGGTTTCTTAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATCAAAGTTCGT-CTCTTA
* * * **** * * *
1103603 AATGAG-CTAAACAAGTATTTTGGTAATAATT
129 AATAAGAC-AAACATGAATTCACATACTTA-C
** * * * * * * *
1103634 TTCATTCATTTT-GTGATTCGGGACAATAAGCACATTCTCCTCATTAGGATAAATGATATTGATG
1 CCCATTC-TTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG
* ** * * * * * * *** * * **
1103698 ATTTACCTTTGC--ATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAATTCAAAGTTCATCAATT
65 CTTT-GGTTT-CTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTT
** * ** *** *
1103761 AAATAAGACATGCATCAATTCTGATAAAAAT
128 AAATAAGACAAACATGAATTCACATACTTAC
* * * * *
1103792 CCCATTCTTTTCAAGATTAGGAACCAAAAACAC-GTTCTCTTCATTAGGATACACT-ACA-TGAT
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAG-TCTCCTCATTAGGATACA-TGATATTGAT
* * ** * * * *
1103854 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTGTCTCTTA
64 GCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
*
1103919 AATAAGACAAACATGAATACACATACTCTAC
129 AATAAGACAAACATGAATTCACATACT-TAC
* * * ** * * *
1103950 CCTATTCTTTTCACGATTAGGCACCATAAACTCAGTCTTGTAATTAGGATACATGATATTGGTCC
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
* * * * * * * *
1104015 TTTCGTTTCTTAAGAGAGGCTTTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCG-CGCCTCA
66 TTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGTC-TCTTA
* * * * * * *
1104077 AATGAGCCAAACAAGGATTCTA-GTATTTATA
129 AATAAGACAAACATGAATTC-ACATACTTA-C
** * * *** * * * * * * *
1104108 TTCTTTCATTTT-GTGATTACAAACTATAAACACATTTTTCTCATTAGGATAAATGATAATGATA
1 CCCATTC-TTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG
* * * * * * ** * * *
1104172 ATTTGCTTTTGCGT--GAAAATCTTTTCTTTGCC-CTACTTTTCTTAAAATCAAAGTTCATCCCA
65 CTTTG-GTTT-CTTAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCT
** ** * * *
1104234 TAAATAAGACATGCAACAATTCTCCTAAC--AGT
127 TAAATAAGACAAACATGAATTCACAT-ACTTA-C
* * * * * * *
1104266 CCCATTCTTTTCAAGATTAGGAACCAAAAACA-AAT-TCCTTCATTAGCATACACGACATTGATG
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCC-TCATTAGGATACATGATATTGATG
* ** * *
1104329 CTTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
65 CTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
*
1104394 ATAAGACAAACATGAATACACATACTCTAC
130 ATAAGACAAACATGAATTCACATACT-TAC
* * ** * * * * *
1104424 CCCATTCTTCTCACGATTAGGCACCATAAACTTAGTCTTCTCATTCGGATAAACGATATTGGTGC
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
* * * * * * *
1104489 TTTGGTTTCTTAAGAAAGGC-TTTGTTCCCACCAATTTTTG-TAAAGTCAAAGCTCATGC-CTCA
66 TTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTA
** ** * *
1104551 AAGGATCCAAACATGGATTCTA-GTA-TTGATC
129 AATAAGACAAACATGAATTC-ACATACTT-A-C
** ** * * * * * * *
1104582 TTCATTCATTTTGCA--ATTACACACTATAAACACATTATCCTCCTTAGGTTAAATGATATTGAC
1 CCCATTC-TTTT-CATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGAT
* ** * * * ** *** * * *
1104645 GTTTTCTTTTACGT--GGAAATCTTTTCTTTGCC-TTATTTTCCTTAAAATCAAATTTCATCTAT
64 GCTTTGGTTT-CTTAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCT
* * * * *
1104707 TAAATAAGGCACACATCAATCCTCATGACAGTT--
127 TAAATAAGACAAACATGAATTCACAT-AC--TTAC
* * * * * * *
1104740 -CCATTCTATTCAAGATT-GTGAACCAAAAACACATTC-CCTTCATTAGGATACACGACATTGAT
1 CCCATTCTTTTCATGATTAG-GCACCATAAACACAGTCTCC-TCATTAGGATACATGATATTGAT
* ** * * * * *
1104802 GCTTTGGTGTCGCAAAAAAAGCTTTTCTTT-GA-GATTTTTGATAGAATCAAAGTTTGTCT-TGT
64 GCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCT-T
*
1104864 AAATAAGACAAACATGAATACACATACTCTAC
128 AAATAAGACAAACATGAATTCACATACT-TAC
* ** * * * * *
1104896 CCCATTCTTTTCACGATTAGGCACCATAAACTTAGTCTTCTAATTAGGATATACGATATTGGTGC
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
* * * * * *
1104961 TTTGGTTTCTTTAGAAAGGCTTTT-TTCCCACCAATATTTG-TAAAGTCTAAA-TTCGTGC-CTC
66 TTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATC-AAAGTTCGT-CTCTT
* * * ***
1105022 AAATGAGCCAAACA-GGATTCTGGTA-TTGATC
128 AAATAAGACAAACATGAATTCACATACTT-A-C
** *** * * * * * *
1105053 TTCATT-TCTTGGGTGATTAGGCACTATGAACACATTCTCCTAATTAGGATAAATGATATTGGTG
1 CCCATTCT-TTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG
* ** * ** * * * *** * *
1105117 ATTTCCTTTTTTGTGGAAATCTTTTCTTTTCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTA
65 CTTTGGTTTCTTAAGAAAAGCTTTTC-TTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
* *** * * * *
1105181 AATAAGGCGTGCATCAATTCTCAAGACAGT-C
129 AATAAGACAAACATGAATTCAC-ATAC-TTAC
* * * * * * * *
1105212 CCCATT-TTTCTCAAGATTTGGAATCAAAAACACATTC-CCTTCATTAGGATACCTGACATTGAT
1 CCCATTCTTT-TCATGATTAGGCACCATAAACACAGTCTCC-TCATTAGGATACATGATATTGAT
* ** * * * *
1105275 GC-TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTA
64 GCTTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
**
1105339 AATAAGACAAACATGAAGACACATACTCTAC
129 AATAAGACAAACATGAATTCACATACT-TAC
* * *** * * * *
1105370 CCCATTCTTTTCACGATTAGGCACTATAAACTTTGTCTTCTCATTAAGATACACGATATTGGTGC
1 CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
*
1105435 TTTGGTTTCTTAAG-AAAGGTTTT-TTTCCCACCAATTTTTG
66 TTTGGTTTCTTAAGAAAAGCTTTTCTTT-CCACC-ATTTTTG
1105475 TATAGTTTAA
Statistics
Matches: 2086, Mismatches: 712, Indels: 304
0.67 0.23 0.10
Matches are distributed among these distances:
153 1 0.00
154 1 0.00
155 8 0.00
156 71 0.03
157 383 0.18
158 924 0.44
159 666 0.32
160 28 0.01
161 1 0.00
162 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (158 bp):
CCCATTCTTTTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGC
TTTGGTTTCTTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAA
TAAGACAAACATGAATTCACATACTTAC
Found at i:1102651 original size:475 final size:473
Alignment explanation
Indices: 1101536--1107774 Score: 8022
Period size: 475 Copynumber: 13.3 Consensus size: 473
1101526 TTTTTCAAAA
* * *
1101536 ATAGAATCAAAGTTTGTCTCGTAAGTAAGACAAACATGAATACACATGCTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* * * *
1101601 CATGATTAGGCACCATAAACTTAGTCTTCTAATTAGGATATATGATATTGGTGCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * * *
1101666 TAGAAAGGCTTTTTTCCCACCAATATTTGTAAAGTCTAAATTCATGCCTCAAATGAGCCAAAC-A
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* * * * *
1101730 GGAGTCTAGTATTGATCTTCATTTC-GTTTGTAATTAGGCACTTTGAGCACATTCTCCTCATTAG
196 GGATTCTAGTATTGATCTTCA-TTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAG
* * * *
1101794 GATAAATGATATTGATGATTTCCTTTTGCGTGGAAATCTTCTCTTTTCCCTATGTTCCTTAAAAT
259 GATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
1101859 CAAAGTTCATCCCTTAAATAACGCACACATCAATACTCAAAATAGTCCCCATTCTTTTCAAGATT
324 CAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGT-CCCATTCTTTTCAAGA-T
*
1101924 TGGAATCAAAAACACATTCCCTTCA-T----T-------A---ATGC-TTGGTGTCACAAGAAAA
387 TGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAA
**
1101973 TATTTTCTTTCCACCGTTTTTG
452 GCTTTTCTTTCCACCGTTTTTG
* **
1101995 ATAGAATCAAAGTTTGTCTCTTAAATAGGATGAACATGAATACACATACTCTAACCCCATTCTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCT-ACCCCATTCTTT
* * * * **
1102060 TCATGATTAGGCACCGTAAACTTAGTCTTCTCGTTAGGATACACGATATTGGTCCTTCCGTTTCT
65 TCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT
* * * * *
1102125 TAAGAAAGGCTTTTTTCCCACAAATTTTTGCAAATTCTAAGTTCATGCCTCAAATGAGCTAAACA
130 TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA
** * * * * * * *
1102190 ATTATTTTGGTAATAATCTTCATTCATTTTGTGATTCGGGACAATAAGCACATTCTCCTCATTAG
195 AGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAG
* * * * * * * *
1102255 GATAAATGATATTGACGATTTACCTTTGCATGGAAATCTTTTCCTTACTCTATTTTCCTTAAATT
259 GATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *** * * * * * *
1102320 CGAAGTTCATTAATTAAATAAGACATGCATCAATTTTGATAAAAATCCCATTCTTTTCAAGATTA
324 CAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATT-
* * * *
1102385 GGAACCAAAAACACGTTCTCTTCATTAGGATACACGACATTGTTGTTTTGGTGTCACAAGAAAAG
388 GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAG
1102450 CTTTTCTTTCCACCGTTTTTG
453 CTTTTCTTTCCACCGTTTTTG
1102471 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* * * * * *
1102536 CACAATTAGGCACCATAAACTCAGTGTTCTAATTAGGATACATGATATTGGTCCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * *
1102601 AAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATGAGCTAAACAA
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
*
1102666 GGATTCTAGTATTGATCTTCATT-ACTTTTGTGATTAGGCACCATGAACACATTCTCCTCATTAG
196 GGATTCTAGTATTGATCTTCATTCA-TTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAG
* * *
1102730 GATAAATGATATTGATGATTTCCTTTTGCGTGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAAT
259 GATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1102795 CAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCAAAATAGTCCCCATTCTTTTCAAGATT
324 CAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGT-CCCATTCTTTTCAAGA-T
* *
1102860 TGGAATCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGTCACAAGAAAA
387 TGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAA
*
1102924 GCTTTTCTTTCCATCGTTTTTG
452 GCTTTTCTTTCCACCGTTTTTG
*
1102946 ATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACACATACTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTC-TTT
* *
1103011 TCATGA-TAGGCACCATAAACTTAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCT
65 TCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT
* * *
1103075 TAAGAAAGGATTTTTTTCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACA
130 TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA
* *
1103140 AGGATTCTAGTATTGATCTTCATT-ACTTTTGTGGTTAGGCACCATGAACACATTCTCCTCATTA
195 AGGATTCTAGTATTGATCTTCATTCA-TTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTA
*
1103204 GGATAAATGATATTGATGATTTTTTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
258 GGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * *
1103269 TCAAAGTTCATCCCTTAAACAAGGCACACATCAATTCTCATAATAATCCCCATTCTTTTCAAGAT
323 TCAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGT-CCCATTCTTTTCAAGAT
* * ** *
1103334 TGGGAACCAGAAACACATTCCCTTCATTAGGATACACGACATCGATGCTTTGGCATCGCAAGAAA
387 T-GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAA
*
1103399 AGCTTTTCTTTCCACCATTTTTG
451 AGCTTTTCTTTCCACCGTTTTTG
* * * *
1103422 ATAAAATCAAAGTTCGTCTCTTAAAAAAGACAAACATGGATACACATACTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* *
1103487 CACGATTAGGCACCGTAAACTTAGTCTTCTCATTAGGATACACGATATTGGTCCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * * * *
1103552 AAGAAAGGCTTTTTTCCCACAAATTTTTGCAAATTCTAAGTTCATGCCTCAAATGAGCTAAACAA
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* * * * * * * * *
1103617 GTATTTTGGTAATAATTTTCATTCATTTTGTGATTCGGGACAATAAGCACATTCTCCTCATTAGG
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGG
* * * * *
1103682 ATAAATGATATTGATGATTTACCTTTGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAATTC
260 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
** * * * * *
1103747 AAAGTTCATCAATTAAATAAGACATGCATCAATTCTGATAAAAATCCCATTCTTTTCAAGATTAG
325 AAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATT-G
* * * *
1103812 GAACCAAAAACACGTTCTCTTCATTAGGATACACTACA-TGATGTTTTGGTGTCACAAGAAAAGC
389 GAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGC
*
1103876 TTTTCTTTCCACCGTTTTCG
454 TTTTCTTTCCACCGTTTTTG
*
1103896 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCTATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* * * * * *
1103961 CACGATTAGGCACCATAAACTCAGTCTTGTAATTAGGATACATGATATTGGTCCTTTCGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* *
1104026 AAGAGAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAA
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* * * *** * *
1104091 GGATTCTAGTATTTATATTCTTTCATTTTGTGATTACAAACTATAAACACATTTTTCTCATTAGG
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* * * *
1104156 ATAAATGATAATGATAATTTGCTTTTGCGTGAAAATCTTTTCTTTGCCCTACTTTT-CTTAAAAT
260 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAAT
* * * * *
1104220 CAAAGTTCATCCCATAAATAAGACATGCAACAATTCTCCTAACAGTCCCATTCTTTTCAAGATTA
324 CAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATT-
* * *
1104285 GGAACCAAAAACAAATT-CCTTCATTAGCATACACGACATTGATGCTTTGGTGTCCCAAGAAAAG
388 GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAG
*
1104349 CTTTTCTTTCCACCATTTTTG
453 CTTTTCTTTCCACCGTTTTTG
*
1104370 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTCT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* *
1104435 CACGATTAGGCACCATAAACTTAGTCTTCTCATTCGGATAAACGATATTGGTGCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * * * * * *
1104500 AAGAAAGGCTTTGTTCCCACCAATTTTTGTAAAGTCAAAGCTCATGCCTCAAAGGATCCAAACAT
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
** ** * *
1104565 GGATTCTAGTATTGATCTTCATTCATTTTGCAATTACACACTATAAACACATTATCCTCCTTAGG
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* * * *
1104630 TTAAATGATATTGACG-TTTTCTTTTACGTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATC
260 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* ** * * * * *
1104694 AAATTTCATCTATTAAATAAGGCACACATCAATCCTCATGACAGTTCCATTCTATTCAAGATTGT
325 AAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATTG-
* *
1104759 GAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAAAAAAGC
389 GAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGC
*
1104824 TTTTCTTT-GA--GATTTTTG
454 TTTTCTTTCCACCG-TTTTTG
1104842 ATAGAATCAAAGTTTGTCT-TGTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTT
1 ATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTT
* *
1104906 TCACGATTAGGCACCATAAACTTAGTCTTCTAATTAGGATATACGATATTGGTGCTTTGGTTTCT
65 TCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT
* * *
1104971 TTAGAAAGGCTTTTTTCCCACCAATATTTGTAAAGTCTAAATTCGTGCCTCAAATGAGCCAAAC-
130 TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA
* ** *
1105035 AGGATTCTGGTATTGATCTTCATTTC-TTGGGTGATTAGGCACTATGAACACATTCTCCTAATTA
195 AGGATTCTAGTATTGATCTTCA-TTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTA
* * ** *
1105099 GGATAAATGATATTGGTGATTTCCTTTTTTGTGGAAATCTTTTCTTTTCCCTATTTTCCTTAAAA
258 GGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
**
1105164 TCAAAGTTCATCCCTTAAATAAGGCGTGCATCAATTCTCA-AGACAGTCCCCATT-TTTCTCAAG
323 TCAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATA-ACAGT-CCCATTCTTT-TCAAG
*
1105227 ATTTGGAATCAAAAACACATTCCCTTCATTAGGATAC-CTGACATTGATGC-TTGGTGTCACAAG
385 A-TTGGAACCAAAAACACATTCCCTTCATTAGGATACAC-GACATTGATGCTTTGGTGTCACAAG
*
1105290 AAAAGCTTTTCTTTCCACCGTTTTTT
448 AAAAGCTTTTCTTTCCACCGTTTTTG
*
1105316 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGACACATACTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* * *
1105381 CACGATTAGGCACTATAAACTTTGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * * * * * *
1105446 AAGAAAGGTTTTTTTCCCACCAATTTTTGTATAGTTTAAATTCGTGCCTCAAAAGATCCAAACAT
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* * * * * *
1105511 GGACTCTTGTATTGATCTTCACTCATTTTGCGATTATGCACTATAAACACATTCTCCTCCTTAGG
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* * * * * *
1105576 TTAGATGATTTTGATGATTTTCTTTTGCGTGAAAATCTTATCTTTGCCTTATTTTCCTTAAAATC
260 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * **
1105641 AAAGTTCATCCCTTAAAAAAAGCACATATCAATTCTCATAACAG---------TTT---G---GG
325 AAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATTGG
* * * * **
1105691 AACCAAAAACCCATCCCCTTCATTACGATACACGACATTGATGCTTTCGTGTTGCAAGAAAAGCT
390 AACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCT
1105756 TTTCTTTCCACCGTTTTTG
455 TTTCTTTCCACCGTTTTTG
*
1105775 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-----ACATACTCTACCCCATTTTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* * * * * *
1105835 CATGATTAGGCACCATAAACTTTGTCTTCTTATTAGGAGACACAATATTGGTGCTTAGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * *
1105900 AAGAAAGGCTTTTTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGATCCAAACAT
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* * * * *
1105965 GGATTTTAGTATTGATCTTCATTCA---T-T--TTACG-ATTA-AACACATTCTCCTCAATAGGT
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAACACATTCTCCTCATTAGGA
* * * * *
1106022 TAAATGATTTTGATGATTTTCTTTTGCGCGAAAATCTTTTCTTTGCCCTATTTTACTTAAAATTA
261 TAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
1106087 AAGTTCATCTCTTAAATAAGGCATGCATCAATTCTCAT-A-A-T---A---GTTT---G---GGA
326 AAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATTGGA
* *
1106137 ACCAAAAACACATTCCCTTCATTAGGATACACGACATCGATGCTTTGGCGTCACAAGACAAA-CT
391 ACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGA-AAAGCT
*
1106201 TTTCTTTCCATC-TTCTTTG
455 TTTCTTTCCACCGTT-TTTG
* * * *
1106220 ATAGAATCAAAGTTTGTC-CTTTAAATAAGGCAAACATGAATACACGTACTCTACCCTATTCTTC
1 ATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTT
** * *
1106284 TCATTATTAGGCACCATAAACTTAGTCTTCTCATTAGGATAAACGATATTGGTGCTTT-GTTTTT
65 TCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT
* * *
1106348 TAAGAAAGGCTTTGTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGATCCAAACA
130 TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA
* * * * * * *
1106413 TGAATTCTAGTGTTGATCTTCATTCATTTTGTCATTACGCACCATAAACACATTCTCCTTATTAG
195 AGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAG
* * *
1106478 GATAAATGATATTGATAATTTTCTTTTACGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
259 GATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1106543 CAAAGTTCATCTCTTAAATAAGGCACGCATCAATTCTCATAATAGTCCCTATTCTTTTCAAGATT
324 CAAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCC-ATTCTTTTCAAGATT
* *
1106608 GTGAACCAAAATCACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAA
388 G-GAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAA
* * * *
1106673 GCTTTTCTTTGCTCCATTTTTT
452 GCTTTTCTTTCCACCGTTTTTG
* * *
1106695 ATAGAATCAAAGTTTATCTCGTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTCT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* *
1106760 CATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * *
1106825 AAGAAAGGCTTTGTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGCCAAAAAA
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* * * *
1106890 GGATTCTAGTATTGATCTTCATTCCTTTTATGATTAGGCGCTATGAACACATTCTCCTCACTAGG
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* * *
1106955 ATAAATGATATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTCGCCCTATTTTCTTTAAAATC
260 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
1107020 AAAGTTCATCTCTTAAATAAGGTACGTATCAATTCTCATAAGAGTCCCAATTCTTTTCAAGATTG
325 AAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCC-ATTCTTTTCAAGATT-
* * * *
1107085 GGAATCAAAAACACATTCCCTTCATTAGGATACATGAAATTGATGC-TTAGTGTCACAAGAAAAG
388 GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAG
* *
1107149 CTTTTTTTTCCACTGTTTTTG
453 CTTTTCTTTCCACCGTTTTTG
1107170 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
* * *
1107235 CACGATTAGGCACCATAAACTTAGTCTTCTCAATAAGATACACGTTATTGGTGCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
* * *
1107300 AAAAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGCCAAACAA
131 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
* *
1107365 GGATTCTAGTATTGATCTTCATTCCTTTTGTGATTAGGCACCATGAACACATTCTCCTCATTAGG
196 GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* *
1107430 ATAAATGATATTGATGATTTTCTTTTACGTGGAAATCTTTTCATTGCCCTATTTTCCTTAAAATC
260 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * ** *
1107495 AAAGCTCATCGCTTAAA-AAGACAAGCATCGATTCTTGTAACAGTCTCCATTATTTTCAAGATTT
325 AAAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTC-CCATTCTTTTCAAGA-TT
* * * ** * * ** **
1107559 GGAAGCAAAAACACATTCCCGTCATTAGGGTACTTGACATTGACGCTTTGCTGTTGCTGGAAAAG
388 GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAG
* * *
1107624 CTTTTTTTTTCACTGTTTTTG
453 CTTTTCTTTCCACCGTTTTTG
* * ** * ** ** *
1107645 ATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGATTACTTATACTATTTCTTATTTTTTT
1 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
** *
1107710 CAAAATTAGGCATCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
66 CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
1107775 TAGAGGCAAT
Statistics
Matches: 5074, Mismatches: 606, Indels: 184
0.87 0.10 0.03
Matches are distributed among these distances:
443 1 0.00
444 4 0.00
445 219 0.04
446 3 0.00
447 3 0.00
448 4 0.00
449 90 0.02
450 68 0.01
451 1 0.00
452 1 0.00
453 1 0.00
454 159 0.03
455 5 0.00
456 2 0.00
458 154 0.03
459 123 0.02
460 168 0.03
461 134 0.03
462 1 0.00
465 3 0.00
466 2 0.00
468 3 0.00
471 65 0.01
472 300 0.06
473 177 0.03
474 993 0.20
475 1602 0.32
476 784 0.15
477 4 0.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.36
Consensus pattern (473 bp):
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTACCCCATTCTTTT
CACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTT
AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAA
GGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAACACATTCTCCTCATTAGGA
TAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATCCCTTAAATAAGGCACGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATTGGA
ACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
TTCTTTCCACCGTTTTTG
Found at i:1106851 original size:159 final size:157
Alignment explanation
Indices: 1106224--1107445 Score: 408
Period size: 159 Copynumber: 7.7 Consensus size: 157
1106214 TCTTTGATAG
** * * *
1106224 AATCAAAGTTTGTCCTTTAAATAAGGCAAACATGAATACACGTACT-CTACCCTATTCTTCTCAT
1 AATCAAAGTTCATCC-TTAAATAAGACAAACATGAATACACATACTACTACCCCATTCTTCTCAT
* ** * * *
1106288 TATTAGGCACCATAAACTTAGTCTTCTCATTAGGATAAACGATATTGGTGCTTTGTTTTTTAAGA
65 GATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATGCTTTGTTTCTTAAGA
* *
1106353 AAGGC-TTTGTTCCCACCAATTTTTGTAA
130 AAAGCTTTTCTTCCCACCAATTTTT-TAA
* * * * * * ** **
1106381 AGTCTAAGTTCGTGCC-TCAA-AAGATCCAAACATGAAT--TC-TAGTGTTGATCTTCATTCATT
1 AATCAAAGTTCAT-CCTTAAATAAGA--CAAACATGAATACACATACTACT-A-CCCCATTC-TT
** * * * * * **
1106441 -TTGTCATTACGCACCATAAACACATTCTCCTTATTAGGATAAATGATATTGATAATTT-TCTT-
60 CTCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATGCTTTGT-TTC
* * ** *
1106503 TTACGTGAAAATCTTTTCTTTGC-CCTATTTTCCTTAA
124 TTA--AGAAAAGCTTTTCTTCCCACCAATTTT--TTAA
* ** * * * * * * * *
1106540 AATCAAAGTTCATCTCTTAAATAAGGCACGCATCAATTCTCATAATAGT-CCCTATTCTTTTCAA
1 AATCAAAGTTCATC-CTTAAATAAGACAAACATGAATACACATACTACTACCCCATTCTTCTCAT
* * * * * **
1106604 GATT-GTGAACCA-AAATCACATTC-CCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGC
65 GATTAG-GCACCATAAA-CACAGTCTCC-TCATTAGGATAAACGATATTGATGCTTT-GTTTCTT
** *
1106666 AAGAAAAGCTTTTCTTTGCTCC-ATTTTTTATA
126 AAGAAAAGCTTTTCTTCCCACCAATTTTTTA-A
* *
1106698 GAATCAAAGTTTATCTCGTAAATAAGACAAACATGAATACACATACT-CTACCCCATTCTTCTCA
1 -AATCAAAGTTCATC-CTTAAATAAGACAAACATGAATACACATACTACTACCCCATTCTTCTCA
** * *
1106762 TGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCTTAA
64 TGATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATGCTTT-GTTTCTTAA
* *
1106827 GAAAGGC-TTTGTTCCCACCAATTTTTGTAA
128 GAAAAGCTTTTCTTCCCACCAATTTTT-TAA
* * * * * * * * * * * **
1106857 AGTCTAAA-TTCGTGCCTCAAATGAGCCAAAAAAGGAT--TC-TAGTATTGATCTTCATTCCTT-
1 AATC-AAAGTTCAT-CCTTAAATAAGACAAACATGAATACACATACTACT-A-CCCCATT-CTTC
* * * * * * * * *
1106917 TTATGATTAGGCGCTATGAACACATTCTCCTCACTAGGATAAATGATATTGATGATTT-TCTTTT
61 TCATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATGCTTTGT-TTCT
** * * * *
1106981 GTGTGGAAATCTTTTCTTCGCC-CTATTTTCTTTAA
125 -TAAGAAAAGCTTTTCTTC-CCACCAATTT-TTTAA
** *** * * * ** * * * *
1107016 AATCAAAGTTCATCTCTTAAATAAGGTACGTATCAATTCTCATAAGAGT-CCCAATTCTTTTCAA
1 AATCAAAGTTCATC-CTTAAATAAGACAAACATGAATACACATACTACTACCCCATTCTTCTCAT
* * * * * * * * * * **
1107080 GATTGGGAATCAAAAACACATTC-CCTTCATTAGGATACATGAAATTGATGCTTAGTGTCACAAG
65 GATTAGGCACCATAAACACAGTCTCC-TCATTAGGATAAACGATATTGATGCTTTGTTTCTTAAG
* * ** *
1107144 AAAAGCTTTTTTTTCCA-CTGTTTTTGATAG
129 AAAAGCTTTTCTTCCCACCAATTTTT--TAA
** * *
1107174 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACT-CTACCCCATTCTTTTCAC
1 AATCAAAGTTCATC-CTTAAATAAGACAAACATGAATACACATACTACTACCCCATTCTTCTCAT
** * * * * * *
1107238 GATTAGGCACCATAAACTTAGTCTTCTCAATAAGATACACGTTATTGGTGCTTTGGTTTCTTAA-
65 GATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATGCTTT-GTTTCTTAAG
*
1107302 AAAAGGCTTTT-TTTCCACCAATTTTTGTAA
129 AAAA-GCTTTTCTTCCCACCAATTTTT-TAA
* * * * * * * * * * **
1107332 AGTCTAAGTTCGTGCCTTAAATGAGCCAAACAAGGAT--TC-TAGTATTGATCTTCATTCCTT-T
1 AATCAAAGTTCAT-CCTTAAATAAGACAAACATGAATACACATACTACT-A-CCCCATT-CTTCT
** * * *
1107393 TGTGATTAGGCACCATGAACACATTCTCCTCATTAGGATAAATGATATTGATG
62 CATGATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATG
1107446 ATTTTCTTTT
Statistics
Matches: 762, Mismatches: 236, Indels: 133
0.67 0.21 0.12
Matches are distributed among these distances:
154 3 0.00
155 11 0.01
156 15 0.02
157 87 0.11
158 302 0.40
159 308 0.40
160 19 0.02
161 9 0.01
162 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
AATCAAAGTTCATCCTTAAATAAGACAAACATGAATACACATACTACTACCCCATTCTTCTCATG
ATTAGGCACCATAAACACAGTCTCCTCATTAGGATAAACGATATTGATGCTTTGTTTCTTAAGAA
AAGCTTTTCTTCCCACCAATTTTTTAA
Found at i:1107442 original size:158 final size:157
Alignment explanation
Indices: 1106277--1107445 Score: 507
Period size: 158 Copynumber: 7.4 Consensus size: 157
1106267 ACTCTACCCT
* * ** * * * *
1106277 ATTCTTCTCATTATTAGGCACCATAAACTTAGTCTTCTCATTAGGATAAACGATATTGGTGCTTT
1 ATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
* * * * * *
1106342 -GTTTTTTAAGAAAGGCTTTGTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC-CTCAAA-AG
66 GGTTTCTTAA-AAAAGCTTTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCGT-CTCTTAAATA-
* * * *
1106404 ATCCAAACATGAATTCTAGTGTTGATCTTC
128 AGCCAAACAAGAATTCTAGTATTGATCTCC
* * * * **
1106434 ATTCATTTT-GTCATTACGCACCATAAACACATTCTCCTTATTAGGATAAATGATATTGATAATT
1 ATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGAT-GCT
** * * * * * * *
1106498 TTCTTTTACGT-GAAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCTCTTAA
64 TTGGTTT-CTTAAAAAAGCTTTT-TTTCCACCAATTTT--TGTAAAGTCAAAGTTCGTCTCTTAA
* ** ** *
1106560 ATAAGGCACGCATCAATTCTCA-TAAT-AGTC-CC
125 ATAAGCCAAACAAGAATTCT-AGTATTGA-TCTCC
* * * * *
1106592 TATTCTTTTCAAGATT-GTGAACCA-AAATCACATTC-CCTTCATTAGGATACACGACATTGATG
1 -ATTCTTTTCATGATTAG-GCACCATAAA-CACATTCTCC-TCATTAGGATAAATGATATTGATG
* ** * * * * ** *
1106654 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTGCTCCATTTTTTATAGAA-TCAAAGTTTATCTCGTA
62 CTTTGGTTTCTTAA-AAAAGCTTTT-TTTCCACCAATTTTTGTA-AAGTCAAAGTTCGTCTCTTA
* * * * *
1106718 AATAAGACAAACATGAATAC-ACATACTCT-A-CCCC
124 AATAAGCCAAACAAGAATTCTA-GTA-T-TGATCTCC
* ** * * * *
1106752 ATTCTTCTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATAAACGATATTGGTGCTTT
1 ATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
* * * * *
1106817 GGTTTCTTAAGAAAGGCTTTGTTCCCACCAATTTTTGTAAAGTCTAAA-TTCGTGC-CTCAAATG
66 GGTTTCTTAA-AAAAGCTTTTTTTCCACCAATTTTTGTAAAGTC-AAAGTTCGT-CTCTTAAATA
* * *
1106880 AGCCAAAAAAGGATTCTAGTATTGATCTTC
128 AGCCAAACAAGAATTCTAGTATTGATCTCC
* * * * *
1106910 ATTCCTTTT-ATGATTAGGCGCTATGAACACATTCTCCTCACTAGGATAAATGATATTGATGATT
1 ATT-CTTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTT
** *** * * * * * *
1106974 TTCTTT-TGTGTGGAAATCTTTTCTTCGC-CCTATTTTCTTTAAAATCAAAGTTCATCTCTTAAA
65 TGGTTTCT-T-AAAAAAGCTTTTTTTC-CACCAATTTT-TGTAAAGTCAAAGTTCGTCTCTTAAA
** *** ** *
1107037 TAAGGTACGTATCAATTCTCA-TA-AGAGTC-CC
126 TAAGCCAAACAAGAATTCT-AGTATTGA-TCTCC
* * * * * * *
1107068 AATTCTTTTCAAGATTGGGAATCAAAAACACATTC-CCTTCATTAGGATACATGAAATTGATGC-
1 -ATTCTTTTCATGATTAGGCACCATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGCT
* * ** ** *
1107131 TTAGTGTCACAAGAAAAGCTTTTTTTTCCA-CTGTTTTTGATAGAA-TCAAAGTTTGTCTCTTAA
64 TTGGTTTCTTAA-AAAAGC-TTTTTTTCCACCAATTTTTG-TA-AAGTCAAAGTTCGTCTCTTAA
* * * * *
1107194 ATAAGACAAACATGAATAC-ACATACTCT-A-CCCC
125 ATAAGCCAAACAAGAATTCTA-GTA-T-TGATCTCC
* ** * * * * * * * *
1107227 ATTCTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCAATAAGATACACGTTATTGGTGCTTT
1 ATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
* *
1107292 GGTTTCTTAAAAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGC-CTTAAATGA
66 GGTTTCTTAAAAAA-GCTTTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCGT-CTCTTAAATAA
* *
1107356 GCCAAACAAGGATTCTAGTATTGATCTTC
129 GCCAAACAAGAATTCTAGTATTGATCTCC
* *
1107385 ATTCCTTTT-GTGATTAGGCACCATGAACACATTCTCCTCATTAGGATAAATGATATTGATG
1 ATT-CTTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
1107446 ATTTTCTTTT
Statistics
Matches: 732, Mismatches: 211, Indels: 137
0.68 0.20 0.13
Matches are distributed among these distances:
156 3 0.00
157 58 0.08
158 340 0.46
159 308 0.42
160 21 0.03
161 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (157 bp):
ATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
GGTTTCTTAAAAAAGCTTTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCGTCTCTTAAATAAGC
CAAACAAGAATTCTAGTATTGATCTCC
Found at i:1115098 original size:33 final size:33
Alignment explanation
Indices: 1115037--1115103 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1115027 TGAGAGTTGA
** *
1115037 TCACTTCACTTTCGCAGCACATGAATGAGCACT
1 TCACTTCACCCTCACAGCACATGAATGAGCACT
* *
1115070 TCACTTCACCCTCACAGCGCATGGATGAGCACT
1 TCACTTCACCCTCACAGCACATGAATGAGCACT
1115103 T
1 T
1115104 TAGTTCTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (33 bp):
TCACTTCACCCTCACAGCACATGAATGAGCACT
Found at i:1116053 original size:19 final size:19
Alignment explanation
Indices: 1115990--1116062 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 19
1115980 AACCCTTGTA
*
1115990 TGTATCGATACACT-TTCAGA
1 TGTATCGATACA-TGTTCA-T
* *
1116010 TGTATCGATAC-CGTATGCTT
1 TGTATCGATACATGT-T-CAT
1116030 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
1116049 TGTATCGATACATG
1 TGTATCGATACATG
1116063 AACAAATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
19 17 0.39
20 24 0.55
21 3 0.07
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:1116074 original size:20 final size:19
Alignment explanation
Indices: 1116030--1116084 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
1116020 CCGTATGCTT
** *
1116030 TGTATCGATACATGTTCAT
1 TGTATCGATACATGAACAA
1116049 TGTATCGATACATGAACAAA
1 TGTATCGATACATGAAC-AA
*
1116069 TGTATCAATACATGAA
1 TGTATCGATACATGAA
1116085 ACTGGTAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATGAACAA
Found at i:1116168 original size:63 final size:63
Alignment explanation
Indices: 1116048--1116168 Score: 147
Period size: 63 Copynumber: 1.9 Consensus size: 63
1116038 TACATGTTCA
* * * *
1116048 TTGTATCGATACATGAACAAATGTATCAATACATGAAACTGGTAGTAGCTACCTTACCACTAT
1 TTGTATCGATAAATGAACAAATGTATCAATACATGAAAATGGTAGTAGATACATTACCACTAT
* * *
1116111 TTGTATCGATAAATG-GCACAATGTATCAATACATGAAGAATTGTA-TCGATACATTACC
1 TTGTATCGATAAATGAACA-AATGTATCAATACATGAA-AATGGTAGTAGATACATTACC
1116169 TCAAACGGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
62 2 0.04
63 42 0.86
64 5 0.10
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (63 bp):
TTGTATCGATAAATGAACAAATGTATCAATACATGAAAATGGTAGTAGATACATTACCACTAT
Found at i:1118157 original size:476 final size:475
Alignment explanation
Indices: 1116898--1121036 Score: 5020
Period size: 476 Copynumber: 8.7 Consensus size: 475
1116888 AGCTTACACA
*
1116898 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * * *
1116963 TTTCTTTGCCTTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTTTTG
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
1117028 TAACAGTCTCCATTCTTTT-AAGGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGA
131 TAACAGTCTCCATTCTTTTCAA-GATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGA
* * * *
1117092 CGTTGATGCTTTGATGTCGCAAGAAAAGCTTTTTTTTCAACCATTTTTGATAGAATCAAAGTTTT
195 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* **
1117157 CCCCTTAAATAAGACAAACATGAATAATCATACTAATCCCAATTCTTTTTGGGATTAGGCACCAA
260 CCCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCAA
* * * * * *
1117222 AAACATAGTCTTGTCATGAGGATGCACGATATTGATGCTTTGGTTTTGCTACAATGGC-TTTCTT
325 AAACATAGTCTTCTCATTAGGATGCACGATATTGATGCTAT-GTTTTGCAAGAAAGGCTTTTC-T
* ** * *
1117286 CCCACTAATTTTTGTAAAGTCTAAGTTCGCGCCCCAAATAAGCCAAACAAGGATTCTAGTATTGA
388 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGA
* *
1117351 TATTCATTCATTTTGTGATTATG
453 TCTTCATTCATTTTGTGATTACG
* * * *
1117374 CACTATAAACACATTCTCCTTATTAGGATAAAGGATATTGATGATTTTTTTTTTGCGTGAAAATC
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCGTGGAAATC
* * *
1117439 TTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATACGACACGCATAAATTCTC
65 TTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTC
* * * **
1117504 GTAATAGTCTCTATTTTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACAAGA
130 GTAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGA
* ** * ** *
1117569 CATTGATGCTTTGG-GGCTGCAAGAAAAGCTTTTCCCTCCACTGTTTTTTATAGAATCAAAGTTT
195 CATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTT
** ** * * * * * * * * *
1117633 ATCTTTTAAATATGACAAACATTAATACTCATACTATTCCCCATTCTTTTCAAGATCAAGCTCCA
259 GCCCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCA
* ** * ** * * *
1117698 TAAATGTAGCCTTCTCATTAGGATATATGATATTGGTGCTAATGTTTTGCAAGAAACGCTTTTCT
324 AAAACATAGTCTTCTCATTAGGATGCACGATATTGATGCT-ATGTTTTGCAAGAAAGGCTTTTCT
* * *
1117763 CCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTGAAATGTGCCAAACAAGGATTCTAGTATTGA
388 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGA
*
1117828 TCTTCGATT-ATTTTGTGATTACA
453 TCTTC-ATTCATTTTGTGATTACG
* *
1117851 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGAAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* *
1117916 TTTCTTTGTCCTATTTTAC-TAAAAGTCAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTC
66 TTTCTTTGCCCTATTTTACTTAAAA-TCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTC
* * * * * *
1117980 GTAACAGTCTCCATTCTTTTTAGGATTTTGAAGCAAAAACACATTCCCTTCACTAGGGTACTTGA
130 GTAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGA
* * * *
1118045 CATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCCTTCAACCATTTTTTATAGAATCGAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * * ** *
1118110 CCCCTTAAATAAAACAAACATGAATAGTCAAACTAATCCAAATTCTTTTTGGGATTAGGCACGAA
260 CCCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCAA
* * *
1118175 AAACATAGTCTTCTCATAAGGATGCACGATATTGATGCCT-TAGTTTTGCTAGAATGGC-TTTCT
325 AAACATAGTCTTCTCATTAGGATGCACGATATTGATG-CTAT-GTTTTGCAAGAAAGGCTTTTC-
* * * *
1118238 TCCCGCCAATTTTTGTAAAGTCTAAGTTCTTGCCCCAAATGAGCCAAACATGGATTCTAGTATTG
387 TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG
* *
1118303 ATCTTCATTCATTTTCTGATTATG
452 ATCTTCATTCATTTTGTGATTACG
* ** *
1118327 CACTATAAACACAATCTTTTCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * * *
1118392 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAAGACATGCATCAATTCTCA
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
* ** * * *
1118457 TAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAACACATGCCCTTCATTAGGACACTTGA
131 TAACAGTCTCCATTCTTTTCAAGATTTTGAACC-TAAAACACATTCCCTTCATTAGGATACTTGA
* * * * * *
1118522 CATTAATGCTTTGGTGTTGCTAGAAAAGCTTTTCTTTCCACCATTTTTGATAGTATCAAAGTTCG
195 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * * * * * * * * *
1118587 TCGCTTAAATGAGAAAAACATAAATACTCATACTATTCCCCAA-TCTTTTCATGATTATGCGCCA
260 CCCCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCCAATTCTTTTCAGGATTAGGCACCA
* * * *
1118651 TAAACTTAGTTTTCTCATTAGGATACACGATATT-AGTGCT-TCAGTTTCTG-AAGAAAGGCTTT
324 AAAACATAGTCTTCTCATTAGGATGCACGATATTGA-TGCTAT--GTTT-TGCAAGAAAGGCTTT
* ** *
1118713 TTTCCCACCAAAATTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
385 TCTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
*
1118778 TGATCTTCATTCATTTTGTGATTATG
450 TGATCTTCATTCATTTTGTGATTACG
*
1118804 CACTATAAACACATTCTCCTCATTAGGACAAATGATATTGATGATTCTT-TTTTGCGTGGAAATC
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTCTTTTGCGTGGAAATC
* * *
1118868 TTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCACCAATTCTC
65 TTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTC
* * * * * **
1118933 GTAATAGTCTCCATTTTTTTCAGGATTTTGAATCTAAAACACATTCCCTTCAATA-GAGTACAAG
130 GTAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGA-TACTTG
* * * * *
1118997 ACATTGATGCTTTGAG-GTTGCAAGAAAAGCTTTTCCTTCTACCGTTTTTGATAGAAACAAAGTT
194 ACATTGATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTT
** ** * * * * * * * *
1119061 TATCTTTTAAATATGACAAACATTAATATTCATACTATTCCCCATTCTTTTCATGATTAAGCTCC
258 TGCCCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACC
* * * * *
1119126 ATAAACATAGCCTTCTCATTAGGAT-----ATATTGTTGCTAATGTTTTGCAAGAAACGTTTTTC
323 AAAAACATAGTCTTCTCATTAGGATGCACGATATTGATGCT-ATGTTTTGCAAGAAAGGCTTTTC
* * * * * *
1119186 TCCCACTAATTTTTGTAAAGTCTATGTTCATGCGTGAAATGTGCCAAACAAGGATTCTTGTATTG
387 TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG
*
1119251 ATCTTCGA-TCATTTTGTGATTACA
452 ATCTTC-ATTCATTTTGTGATTACG
* *
1119275 CACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * *
1119340 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCTCTTGAATAAGACAAGCATCGATTCTCG
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
* * *
1119405 TAACAGTCTCCATTCTTTTCAGGATTTTGAAGCTAAAACATATTCCCTTCATTAGGATACTTGAC
131 TAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGAC
*
1119470 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTTC
196 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGC
* * * * **
1119535 CCCTTAAATAAGATAAACACGAATAGTCATACTAATCCCTATTCTTTTTAGGATTAGGCATGAAA
261 CCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCAAA
* * ** * * *
1119600 AACATAATCTTCTCATAAGGATGCACGATATTGATAATTTGGTTTTGCTAGAATGGC-TTTCTTC
326 AACATAGTCTTCTCATTAGGATGCACGATATTGATGCTAT-GTTTTGCAAGAAAGGCTTTTC-TC
* * * * *
1119664 CCACTAATTTTTGTAAAGTCCAAGTTCATGCCCCAAATGAGCCAAATATGGATTCTAGTATTGAT
389 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGAT
*
1119729 CTTCATTCATTTTGTGATTAGG
454 CTTCATTCATTTTGTGATTACG
* * ** *
1119751 CACTATGAACACAATCTTTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCGTGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * * * * * *
1119816 TTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCAACTCTTAAAAAAGACACGCATCATTTCTCG
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
* * * ** * * *
1119881 TAATAGTCTGCAATCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGACACTTGAC
131 TAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGAC
* *** * * * **
1119946 ATTGATGCTTTGGTGTTGTTGGAAAAGCTTTTTTTTCCACCATTTTTGATAG-TTACAAAGTTCA
196 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAAT-CAAAGTTTG
* * * * * * * * * * *
1120010 TCTCTTAGATAAGGCAAACATAAATACTCATACTATTCCCCATTCTTTTCATGATTACGCACCAT
260 CCCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCAA
* * * * * * * * *
1120075 AAACTTAGTTTTTTCATTAGGATACACAAAATTGGTGCT-TCAGTTTCT-TAAGAAAGGCTTTTT
325 AAACATAGTCTTCTCATTAGGATGCACGATATTGATGCTAT--GTTT-TGCAAGAAAGGCTTTTC
* **
1120138 TCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAAAATTG
387 TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG
*
1120203 ATATTCATTCATTTTGTGATTACG
452 ATCTTCATTCATTTTGTGATTACG
* *
1120227 CACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * *
1120292 TTTCTTTGCCCTATTTTACTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTG
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
* * *
1120357 TAATAGTCTCCATTCTTTTCTAGATTTTGAACCTAAAACACGTTCCCTTCATTAGGATACTTGAC
131 TAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGAC
* *
1120422 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTAATAAAATCAAAGTTTGC
196 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGC
* *
1120487 CCTTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTTAGGATTAGGCACCAAA
261 CCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCAAA
* * * * ** * *
1120552 AACATAGTCTTCTCATGAGAATGCACGATATTGATGCTTTGGTTTTTCTGGAATGGCTTTTTTCC
326 AACATAGTCTTCTCATTAGGATGCACGATATTGATGCTAT-GTTTTGCAAGAAAGGCTTTTCTCC
* *
1120617 CACCAATTTTTGTAAAGTCTAAGTTCGTGCC-CTAAATGAGCCAAACATGGATTCTAGTATTGAT
390 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-AAATGAGCCAAACAAGGATTCTAGTATTGAT
* *
1120681 TTTCATTCATTTTGTGATTAGG
454 CTTCATTCATTTTGTGATTACG
* * * * * * * *
1120703 CACTATGAACAAAGTCTCTTCATTAGAATAAATGATATTGATAATTATCTTTTGCATGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * * *
1120768 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACACGCATCAATTCTCA
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
* ** * * * *
1120833 TAACAGTCCCCATTCTTTTCAAGATTGGGAGCCAAAAACACATTCCCTTCAATAGGATACATGAC
131 TAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGAC
*
1120898 ATT-ATTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
196 ATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * * *
1120962 CCTCTTAAATAAGACAACCATGAATAGTCATACTAATCCCCATTCTTTT-TGGAATTAGGCACCA
260 CCCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGG-ATTAGGCACCA
* *
1121026 TAAACGTAGTC
324 AAAACATAGTC
1121037 ACCAGTATCG
Statistics
Matches: 3118, Mismatches: 496, Indels: 98
0.84 0.13 0.03
Matches are distributed among these distances:
470 5 0.00
471 397 0.13
472 3 0.00
473 1 0.00
475 32 0.01
476 1854 0.59
477 805 0.26
478 21 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (475 bp):
CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
TAACAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGC
CCCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCAAA
AACATAGTCTTCTCATTAGGATGCACGATATTGATGCTATGTTTTGCAAGAAAGGCTTTTCTCCC
ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCT
TCATTCATTTTGTGATTACG
Found at i:1118741 original size:953 final size:951
Alignment explanation
Indices: 1116898--1121036 Score: 5160
Period size: 953 Copynumber: 4.4 Consensus size: 951
1116888 AGCTTACACA
*
1116898 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * * * *
1116963 TTTCTTTGCCTTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTTTTG
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTCG
* * *
1117028 TAACAGTCTCCATTCTTTTAAGGATTTTGAACCTAAAACACATTCCCTTCATTAGGATACTTGAC
131 TAACAGTCTCCATTCTTTTCAGGATTTTGAACCAAAAACACATTCCCTTCAATAGGATACTTGAC
* * * *
1117093 GTTGATGCTTTGATGTCGCAAGAAAAGCTTTTTTTTCAACCATTTTTGATAGAATCAAAGTTTTC
196 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTAC
* * *
1117158 CCCTTAAATAAGACAAACATGAATAATCATACTAATCCCAATTCTTTTTGGGATTAGGCACCAAA
261 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAAA
* * * * *
1117223 AACATAGTCTTGTCATGAGGATGCACGATATTGATGCTTTGGTTTTGCTACAATGGCTTTCTTCC
326 AACATAGTCTTCTCATTAGGATGCACGATATTGATGC-TTAGTTTTGCTAGAAAGGCTTTCTTCC
* ** *
1117288 CACTAATTTTTGTAAAGTCTAAGTTCGCGCCCCAAATAAGCCAAACAAGGATTCTAGTATTGATA
390 CACCAATTTTTGTAAAGTCTAAGTTCATGCCCCAAATGAGCCAAACAAGGATTCTAGTATTGATA
* *
1117353 TTCATTCATTTTGTGATTATGCACTATAAACACATTCTCCTTATTAGGATAAAGGATATTGATGA
455 TTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGA
* * *
1117418 TTTTTTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAA
520 -TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAA
* * * * *
1117483 ATACGACACGCATAAATTCTCGTAATAGTCTCTATTTTTTTCAAGATTTTGAACCTAAAACACAT
584 ATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACAT
** * ** * **
1117548 TCCCTTCATTAGGATACAAGACATTGATGCTTTGG-GGCTGCAAGAAAAGCTTTTCCCTCCACTG
649 TCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCAACCA
* * ** * * * *
1117612 TTTTTTATAGAATCAAAGTTTATCTTTTAAATATGACAAACATTAATACTCATACTATTCCCCAT
713 TTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAA
* * * * * ** * * * * *
1117677 TCTTTTCAAGATCAAGCTCCATAAATGTAGCCTTCTCATTAGGATATATGATATTGGTGC-TAAT
778 TCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTA-
* * * * *
1117741 GTTTTGCAAGAAACGCTTTTCTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTGAAATGTGC
842 GTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGC
*
1117806 CAAACAAGGATTCTAGTATTGATCTTCGATT-ATTTTGTGATTACA
907 CAAACAAGGATTCTAGTATTGATCTTC-ATTCATTTTGTGATTACG
* *
1117851 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGAAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * *
1117916 TTTCTTTGTCCTATTTTAC-TAAAAGTCAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTC
66 TTTCTTTGCCCTATTTTACTTAAAA-TCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTC
* * * *
1117980 GTAACAGTCTCCATTCTTTTTAGGATTTTGAAGCAAAAACACATTCCCTTCACTAGGGTACTTGA
130 GTAACAGTCTCCATTCTTTTCAGGATTTTGAACCAAAAACACATTCCCTTCAATAGGATACTTGA
* * * * *
1118045 CATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCCTTCAACCATTTTTTATAGAATCGAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTA
* * * ** *
1118110 CCCCTTAAATAAAACAAACATGAATAGTCAAACTAATCCAAATTCTTTTTGGGATTAGGCACGAA
260 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAA
* *
1118175 AAACATAGTCTTCTCATAAGGATGCACGATATTGATGCCTTAGTTTTGCTAGAATGGCTTTCTTC
325 AAACATAGTCTTCTCATTAGGATGCACGATATTGATG-CTTAGTTTTGCTAGAAAGGCTTTCTTC
* * *
1118240 CCGCCAATTTTTGTAAAGTCTAAGTTCTTGCCCCAAATGAGCCAAACATGGATTCTAGTATTGAT
389 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCCCAAATGAGCCAAACAAGGATTCTAGTATTGAT
* * * * *
1118305 CTTCATTCATTTTCTGATTATGCACTATAAACACAATCT-TTTCATTAGGATAAATGATATTGAT
454 ATTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATTGAT
** * *
1118369 GATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTA
518 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTA
* * * ** *
1118434 AATAAGACATGCATCAATTCTCATAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAACAC
583 AATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTTTGAACC-TAAAACAC
* * * * * *
1118499 ATGCCCTTCATTAGGACACTTGACATTAATGCTTTGGTGTTGCTAGAAAAGCTTTTCTTTCCACC
647 ATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* * * * * * *
1118564 ATTTTTGATAGTATCAAAGTTCGTCGCTTAAATGAGAAAAACATAAATACTCATACTATTCCCCA
712 ATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* * * * * * *
1118629 ATCTTTTCATGATTATGCGCCATAAACTTAGTTTTCTCATTAGGATACACGATATT-AGTGCTTC
777 ATCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTT
** *
1118693 AGTTTCTG-AAGAAAGGCTTTTTTCCCACCAAAATTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
841 AGTTT-TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
*
1118757 GCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTATG
905 GCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTACG
*
1118804 CACTATAAACACATTCTCCTCATTAGGACAAATGATATTGATGATTCTT-TTTTGCGTGGAAATC
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTCTTTTGCGTGGAAATC
* *
1118868 TTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCACCAATTCTC
65 TTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTC
* * * * **
1118933 GTAATAGTCTCCATTTTTTTCAGGATTTTGAATCTAAAACACATTCCCTTCAATA-GAGTACAAG
130 GTAACAGTCTCCATTCTTTTCAGGATTTTGAACCAAAAACACATTCCCTTCAATAGGA-TACTTG
* * * * *
1118997 ACATTGATGCTTTGAG-GTTGCAAGAAAAGCTTTTCCTTCTACCGTTTTTGATAGAAACAAAGTT
194 ACATTGATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTT
* * * * * * *** * *
1119061 TATCTTTTAAATATGACAAACATTAATATTCATACTATTCCCCATTCTTTTCATGATTAAGCTCC
258 TACCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACC
* * * * * * *
1119126 ATAAACATAGCCTTCTCATTAGGAT-----ATATTGTTGCTAATGTTTTGCAAGAAACG-TTTTT
323 AAAAACATAGTCTTCTCATTAGGATGCACGATATTGATGCTTA-GTTTTGCTAGAAAGGCTTTCT
* * *** * *
1119185 CTCCCACTAATTTTTGTAAAGTCTATGTTCATGCGTGAAATGTGCCAAACAAGGATTCTTGTATT
387 -TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCCCAAATGAGCCAAACAAGGATTCTAGTATT
* * * *
1119250 GATCTTCGA-TCATTTTGTGATTACACACTATAAACACATTCTCCTCATTGGGATAAATGATATT
451 GATATTC-ATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGGATAAATGATATT
*
1119314 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCTC
515 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCC
* * * * *
1119379 TTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTTTGAAGCTAAAAC
580 TTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAAC
*
1119444 ATATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAA
645 ACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAA
* * *
1119509 CCATTTTTGATAGAATCAAAGTTT-TCCCCTTAAATAAGATAAACACGAATAGTCATACTAATCC
710 CCATTTTTGATAGAATCAAAGTTTGT-CCCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * ** * * * **
1119573 CTATTCTTTTTAGGATTAGGCATGAAAAACATAATCTTCTCATAAGGATGCACGATATTGATAAT
774 CCAATCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* * * * * * *
1119638 TTGGTTTTGCTAGAATGGCTTTCTTCCCACTAATTTTTGTAAAGTCCAAGTTCATGCCCCAAATG
839 TTAGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
1119703 AGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
904 AGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTACG
* * ** *
1119751 CACTATGAACACAATCTTTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCGTGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * * * * *
1119816 TTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCAACTCTTAAAAAAGACACGCATCATTTCTCG
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTCG
* * * * ** * * *
1119881 TAATAGTCTGCAATCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGACACTTGAC
131 TAACAGTCTCCATTCTTTTCAGGATTTTGAACCAAAAACACATTCCCTTCAATAGGATACTTGAC
* *** * * * *
1119946 ATTGATGCTTTGGTGTTGTTGGAAAAGCTTTTTTTTCCACCATTTTTGATAG-TTACAAAGTTCA
196 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAAT-CAAAGTTTA
* * * * * * *** * *
1120010 TCTCTTAGATAAGGCAAACATAAATACTCATACTATTCCCCATTCTTTTCATGATTACGCACCAT
260 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAA
* * * * * * * *
1120075 AAACTTAGTTTTTTCATTAGGATACACAAAATTGGTGCTTCAG-TTT-CTTAAGAAAGGCTTTTT
325 AAACATAGTCTTCTCATTAGGATGCACGATATTGATGCTT-AGTTTTGC-T-AGAAAGGCTTTCT
* * **
1120138 TCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAAAATTG
387 TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCCCAAATGAGCCAAACAAGGATTCTAGTATTG
1120203 ATATTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
452 ATATTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
*
1120268 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTTAAATCAAAGTTCATCCCTT
517 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * *
1120333 AAATAAGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCTAGATTTTGAACCTAAAACAC
582 AAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACAC
*
1120398 GTTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
647 ATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* * *
1120463 ATTTTTAATAAAATCAAAGTTTG-CCCTTTAAATAAGACAAACATGAATAGTCATACTAAT-CCC
712 ATTTTTGATAGAATCAAAGTTTGTCCC-TTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * *
1120526 AATTCTTTTTAGGATTAGGCACCAAAAACATAGTCTTCTCATGAGAATGCACGATATTGATGCTT
776 AA-TCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * ** * *
1120591 TGGTTTTTCTGGAATGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC-CTAAATG
840 TAGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-AAATG
* * *
1120655 AGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGG
904 AGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTACG
* * * * * * * *
1120703 CACTATGAACAAAGTCTCTTCATTAGAATAAATGATATTGATAATTATCTTTTGCATGGAAATCT
1 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
* * *
1120768 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACACGCATCAATTCTCA
66 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTCG
* * ** * *
1120833 TAACAGTCCCCATTCTTTTCAAGATTGGGAGCCAAAAACACATTCCCTTCAATAGGATACATGAC
131 TAACAGTCTCCATTCTTTTCAGGATTTTGAACCAAAAACACATTCCCTTCAATAGGATACTTGAC
* *
1120898 ATT-ATTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
196 ATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTA
* * *
1120962 CCTCTTAAATAAGACAACCATGAATAGTCATACTAATCCCCATTCTTTTTGGAATTAGGCACCAT
260 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAA
*
1121027 AAACGTAGTC
325 AAACATAGTC
1121037 ACCAGTATCG
Statistics
Matches: 2774, Mismatches: 372, Indels: 81
0.86 0.12 0.03
Matches are distributed among these distances:
946 6 0.00
947 556 0.20
948 240 0.09
949 2 0.00
950 1 0.00
951 12 0.00
952 924 0.33
953 1019 0.37
954 14 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (951 bp):
CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCT
TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCAATTCTCG
TAACAGTCTCCATTCTTTTCAGGATTTTGAACCAAAAACACATTCCCTTCAATAGGATACTTGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTAC
CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAAA
AACATAGTCTTCTCATTAGGATGCACGATATTGATGCTTAGTTTTGCTAGAAAGGCTTTCTTCCC
ACCAATTTTTGTAAAGTCTAAGTTCATGCCCCAAATGAGCCAAACAAGGATTCTAGTATTGATAT
TCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTTTGAACCTAAAACACATTC
CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTT
TTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAATCT
TTTCAGGATTAGGCACCAAAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTAGTTT
TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAA
CAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTACG
Found at i:1120554 original size:159 final size:157
Alignment explanation
Indices: 1120391--1121030 Score: 403
Period size: 159 Copynumber: 4.0 Consensus size: 157
1120381 TTTTGAACCT
* * *
1120391 AAAACACGTTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAAACAAG-TCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
*
1120456 TTCAACC-ATTTTTAATAAAATCAAAGTT-TGCCCTTTAAATAAGACAAACATGAATAGTCATAC
65 TTCCACCAATTTTT-ATAAAATCAAAGTTCTGCCC-TTAAATAAGACAAACATGAATAGTCATAC
*
1120519 TAATCCCAATTCTTTTTAGGATTAGGCACCA
128 TAATCCCCATTCTTTTT-GGATTAGGCACCA
* * * * * * ** ** **
1120550 AAAACATAGT-CTTCTCATGAGAATGCACGATATTGATGCTTTGGTTTTTCTGGAATGGCTTTT-
1 AAAACA-AGTCCCT-TCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * * * *
1120613 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCC-TAAATGAGCCAAACATGGAT--TCTAGT
64 TTTCCACCAATTTTTATAAAATCAAAGTTC-TGCCCTTAAATAAGACAAACATGAATAGTC-A-T
* * *** * *
1120675 ATTGATTTTCATTCATTTTGTGATTAGGCACTA
126 ACTAATCCCCATTCTTTTTG-GATTAGGCACCA
** * * * ** * * * * * *
1120708 TGAACAAAGTCTCTTCATTAGAATAAATGATATTGATAATTAT-CTTTTGCATGGAAATCTTTTC
1 AAAAC-AAGTCCCTTCATTAGAATACATGACATTGATGCTT-TGGTGTCGCAAGAAAAGCTTTTC
* * * ** * **
1120772 TTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-ACCTTAAATAAGACACGCATCAATTCTCAT
64 TTTCCACCAATTTT--TATAAAATCAAAGTTC-TGCCCTTAAATAAGACAAACATGAATAGTCAT
* ** *
1120834 AAC-AGTCCCCATTCTTTTCAAGATT-GGGAGCCA
126 -ACTAATCCCCATTCTTTT-TGGATTAGGCA-CCA
* * *
1120867 AAAACACATTCCCTTCAATAGGATACATGACATT-ATTGCTTTGGTGTCGCAAGAAAAGCTTTTC
1 AAAACA-AGTCCCTTCATTAGAATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTC
* *
1120931 TTTCCACC-ATTTTTGATAGAATCAAAGTT-TGCCTCTTAAATAAGACAACCATGAATAGTCATA
64 TTTCCACCAATTTTT-ATAAAATCAAAGTTCTGCC-CTTAAATAAGACAAACATGAATAGTCATA
1120994 CTAATCCCCATTCTTTTTGGAATTAGGCACCA
127 CTAATCCCCATTCTTTTTGG-ATTAGGCACCA
*
1121026 TAAAC
1 AAAAC
1121031 GTAGTCACCA
Statistics
Matches: 348, Mismatches: 102, Indels: 62
0.68 0.20 0.12
Matches are distributed among these distances:
156 2 0.01
157 4 0.01
158 118 0.34
159 208 0.60
160 14 0.04
161 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (157 bp):
AAAACAAGTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACCAATTTTTATAAAATCAAAGTTCTGCCCTTAAATAAGACAAACATGAATAGTCATACTAA
TCCCCATTCTTTTTGGATTAGGCACCA
Found at i:1122293 original size:23 final size:23
Alignment explanation
Indices: 1122250--1122293 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
1122240 ACGTCCTAAT
*
1122250 TTCTTCAAGAATTATACCCCAAA
1 TTCTTCAAGAATTATAACCCAAA
*
1122273 TTCTT-AAGAGATTGTAACCCA
1 TTCTTCAAGA-ATTATAACCCA
1122294 GGGTTGAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (23 bp):
TTCTTCAAGAATTATAACCCAAA
Found at i:1122725 original size:20 final size:20
Alignment explanation
Indices: 1122700--1122752 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
1122690 ATTGGGCATA
* *
1122700 ATGTATCGATACAATTTGTC
1 ATGTATCGATACAATATCTC
1122720 ATGTATCGATACAATATCTC
1 ATGTATCGATACAATATCTC
*
1122740 ATGCATCGATACA
1 ATGTATCGATACA
1122753 TTTCACTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATATCTC
Found at i:1123518 original size:22 final size:22
Alignment explanation
Indices: 1123492--1123536 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
1123482 AAATCATTTT
*
1123492 TTATTTCTTCCCCTTTGTCAAA
1 TTATTTCCTCCCCTTTGTCAAA
1123514 TTATTTCCTCCCCTTTGTCAAA
1 TTATTTCCTCCCCTTTGTCAAA
1123536 T
1 T
1123537 GCCAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.04, T:0.49
Consensus pattern (22 bp):
TTATTTCCTCCCCTTTGTCAAA
Found at i:1131483 original size:19 final size:20
Alignment explanation
Indices: 1131446--1131483 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1131436 TCCCGTTACT
1131446 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
1131466 ATGTATCGATAC-ATTCAT
1 ATGTATCGATACAATTCAT
1131484 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:1131648 original size:13 final size:13
Alignment explanation
Indices: 1131630--1131654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1131620 TACAATGAGC
1131630 ATGTATTGATACA
1 ATGTATTGATACA
1131643 ATGTATTGATAC
1 ATGTATTGATAC
1131655 TAGGCGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:1134798 original size:476 final size:475
Alignment explanation
Indices: 1131969--1136369 Score: 5599
Period size: 475 Copynumber: 9.3 Consensus size: 475
1131959 TAACAGTTGA
* * * * *
1131969 AAAAAAACCTTTCTTGAGAAATCAAAGCACTAGTATCATGTATCCTAAAGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * * * *
1132034 TGGTGCCTCACCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAAGAGAT
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* ** * * * * *
1132099 AATCTTTGATTCTATCAAAAATGATAGAAAGAAAAGCTTTTCTTGTGACACTAACGCACCCATGT
131 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
* * * *
1132164 CATGTATCCTAATGAACGGAATGTGTTTTTGGTTCCCAACTTTGAAAAGAATAGAGACTA-T--G
196 CATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTACG
*
1132226 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAG
261 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * *
1132291 ATCTCTACGCAAAAAAAAATCGTCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
326 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * *
1132356 TGCTCATAAAATGAAAGAAGATCATTACTAGTATCCATGTTTATCTCTTTTAAGGCACGAACTTA
391 TACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTA
1132421 GACTTTACTAAAATTGGCGAG
456 GACTTTACTAAAATTGGCG-G
* * * * *
1132442 AAAAAAACCTTTCTTGCGAAATCAAAGCACCAATACCATGTATGCTAATGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * *
1132507 TGATGCCTAA-CCTGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTTTTATTTAAGAGAT
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* *
1132571 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCACTGT
131 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
* * *
1132636 CATGAATCCTAATAAAGGGAATTTGTTTTTGTTTCCCAACCTTGAAAAGAATGGAGACTATTACG
196 CATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTACG
* * * *
1132701 GGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAGTAGGGCGAAGAAAAG
261 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * *
1132766 ATTTTCACGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAAT-TGGTTTATAGCGG
326 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT-GTTTATAGTGC
* *
1132830 CTACTCATAAAATGAAAGAAGATCATTACTAAAATCCATGTTTATCTCTTTTGAGGCACGAACTT
390 CTACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTT
*
1132895 AGACTTTACTAAAACTGGCAGG
455 AGACTTTACTAAAATTGGC-GG
* * *
1132917 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGCATCGTGTATCCTAATGAGAAGAATATGTTCA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * * * *
1132982 TGCTACCTAATCCAGAAAATAATTGGGATTAGCACGAGTATTCATGTTTATCTTATTTAAGAGAC
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
1133047 AAACATTGATTCTAT-GAAAACGATGGAAA-AAAAGCTTTTCTTGCGACACCAAAACAACAATTT
131 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
* * * * * * *
1133110 CATCTATCCTAATAAAGGGAATGAGTTTTAGGTTCCTAATCC-TAAAAAGAATGGAGACTGTTAT
196 CATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAA-CCTTGAAAAGAATGGAGACTATTAC
* * * * * *
1133174 GAGAATCGATGCTTATCCTATTTTAGGGATGAATTTTTATTTTAAGAAAAATAGGGCAAAAGAAA
260 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAA
* * *
1133239 AGATTTCCATGCAAAAGAAAATCATTAATATCTTTTATCCTAATGAGGAGAATGTGTTTAGAGTG
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
1133304 CCTACTCATAAAATGAAAGAAAATCATTACTAGAATACATGTTTGTCTCTTTTGAGGCATGAACT
389 CCTACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT
1133369 TAGACTTTACTAAAATTGG-GG
454 TAGACTTTACTAAAATTGGCGG
* * * * * *
1133390 GAAAAAGCCTTTCTTGCAAAATCAAATCACCAGTATCATGTATCCTAGTGAGAAGACTATGCTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * * * *
1133455 TGGGGCCTAATCCTGAAAAAAATGGGAATTAGTACGAGTATTCATGTTTATCTTATTTAAGTGAC
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* ** * * *
1133520 AAACTTTGACTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGTGATACTAAAGCATCAATGT
131 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
* * * * * *
1133585 CTTGCATCCTAATGAAA-GGAATGTGATTTTGATTCCCAATCTTAAAAAGAATGGAGACTATTAC
196 CATGTATCCTAAT-AAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTAC
* * * * * *
1133649 GAGAATTGATACTAGTCTTATTTAAGGGATGAACTTTAATTTTAAGGACAATAAGGCAAAGAAAA
260 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * *
1133714 GATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAAGAGAATGTTTTTATAGTGG
325 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
1133779 CTAATCATAAAACGAAAAAAGATCGCTT-CTAGAATCCATGTTTGTCTCTTTTGAGG-ACGAATT
390 CTACTCATAAAATGAAAGAAGATC-ATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT
1133842 TAGACTTTACTAAAATTGATG-GG
454 TAGACTTTACTAAAATTG--GCGG
* * * *
1133865 AAAAAAGGCTTTCTTTCGAAATCAAAGCACTAGTATCGTGCATCCTAATGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
** * * * * *
1133930 TGGTGTTTAAT-CTAGAAAAGAATGGGGATTAGTACGAGTATTAATGCTTGTTTTATTTAAAAGA
66 TGGTGCCTAATCCT-GAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * * * * *
1133994 CAAACTTTAATTCTATGAAAAATAGTGGAAAG-AAAGATTTTCTTGCAACACCAAAGCATCAATG
130 CAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATG
* ** *
1134058 TCATGTATCCTAATAAAGGGAATGTGTTTTT-GTTCCTAATCC-AAAAAAGAATGGAGACTGTTA
195 TCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAA-CCTTGAAAAGAATGGAGACTATTA
* * * * * *
1134121 CAAGAACCGATGTTTGTCTCATTTAAGGGATGAACTTTTATTTTAAGGAAAATAAGGCAAAGAAA
259 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * *
1134186 AGATTTCCATGCAAAAGTAAATCATCAATATCATTTATCCTCATGATGAGAATATGTTTATAGTG
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
1134251 CCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCTTTTGAGGCACGAACA
389 CCTACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT
* *
1134316 TAGACTTCACTAAAATTGGTGCG
454 TAGACTTTACTAAAATTGGCG-G
* * * * * *
1134339 AAAAAAGCCTTTCTTGCGAAATCAAAGCACTAGTATCATGTATGCTACTAAGAAGACTAAGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
*
1134404 TGGTGCCTAATCCGGAAAAGAATGGGGATTAGCACGAGTATT-ATTGTTTGTCTTATTTAAGAGA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCA-TGTTTGTCTTATTTAAGAGA
* * *
1134468 CAAACTTTGATTCTATCAAATACAATGGAAAGAAAAGCTTTTCTTACGACACTAAAGCATCAGTG
130 CAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATG
* * * * * * *
1134533 TCATGTATCATAATAAAAGCATTGTGTTTTTGGTTCCCGACCTTGAAAAGAATGGAGACTGTAAC
195 TCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTAC
* ** *
1134598 GAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAAATAGGGAAAAGAAAA
260 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * * * *
1134663 GATTTCCATGCAAAAGTAAATAATCAACATCATTTATCCTAATGAGAAGAATGGGTTTATACTAC
325 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
1134728 CTACTTATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTCGAGGCATGAATTT
390 CTACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTT
*
1134793 AGACTTTACTAAAATTGGTAGG
455 AGACTTTACTAAAATTGG-CGG
* ** ***
1134815 AAAAAAGCCTCTCTTTTGAAATCAAAGCACCAGTATCGCACATCCTAATGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * * *
1134880 TGGTGCCTAATCCTGGAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGAC
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * * *
1134945 AAACTTTAATTCTATGAAAAACAGTGGAAAAAAAAGGTTTTCTTGTGACACCAAAGCATCAATGT
131 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
* * * ** *
1135010 CATGTATCCCAATAAAGGGATTGTGTTTTTTGTTCTAAATCC-AGAAAAGAATGGAGACTATTAC
196 CATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAA-CCTTGAAAAGAATGGAGACTATTAC
* * *
1135074 GAGAATCGATGTTTATCTTATTTAAGGGATGAACTTTTATTTTAAAGG-AAATAGGGCAAAGAAA
260 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAA
* * ** * *
1135138 AGATTTTCATGCAAAAGAAATTCATCAATATCATTTATCCTCGTGATGAGAATATGTTTATAGTG
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * *
1135203 CCTAATCATAAAATGAAAGAAGATCATTACAAAAATCCATGTTTGTCTTTTTTGAGGCAGGAATT
389 CCTACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT
*
1135268 TAGACTTTACTAAAATTGACGGG
454 TAGACTTTACTAAAATTGGC-GG
* * * * *
1135291 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGCAGCGTGTATCTTATTGAGAAGACTATTTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * ** * *
1135356 GGGTGCCTAATCTTGAAAAGAATGGCCATTAGCATGAGTATTCGTGTTTGTCTTATTTAAGAGAC
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* *
1135421 AAAGTTTGATTCTATCAAAAA-ATAGTGGAAAGAAAAGCTTTTCTTACGACACTAAAGCATCAAT
131 AAACTTTGATTCTATCAAAAACA-A-TGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAAT
* *
1135485 GTCATGTATCCTAAGAAAAGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTA
194 GTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTA
* * *
1135550 CGAGAATCAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAA
259 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * * * *
1135615 AGATTTTCACGCAAAAGAAAATCATCAATCTCATTTATTCTAAAGAGGAGATTGTGTTTATAGTG
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
1135680 CCTACTCATAAAATGAAAGAAGATCATTGCTAGAATCAATGTTTGTCTCTTTTGAGGCACGAAGT
389 CCTACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT
* *
1135745 TACACTTTACTAAAATTGGCAAG
454 TAGACTTTACTAAAATTGGC-GG
* * * * *
1135768 AGAAAAGGCTTTCTTGTGAAATCAAAGCACCAGTATCGTGTATCCCAATGAGAAGACAATGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * * *
1135833 TGCTGCCTAATCCTGAGAAGAATTGGGATTAGCACGTGTATTCATGTTTGTCTAATTTAAGAGAC
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
* *
1135898 AAACTTTGATTCTATCAAAAACAATGGAAAAAAAAGCTTTTCTTGAGACACTAAAGCATCAATGT
131 AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
* * * * * * *
1135963 CATGTATCCTTACAAAGGGAATGTGTATTTGGTTCCCAAGCTTGAAAGGAAT-AAGACTGTTACG
196 CATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTACG
* *
1136027 AGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
261 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
1136092 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTAATAAGGAGAATGTGTTTATAGTACC
326 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * *
1136157 CACTCATAAAATGAAAGAAGATCATTACTAGAATTCATGTTTGTCTCTTTTGAGGCATGAACATG
391 TACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTA
1136222 GACTTTACTAAAATTGGCGGG
456 GACTTTACTAAAATTGGC-GG
* * * * * *
1136243 AAAAAAGCCATTCTAGCGAAATCAAAGAACCAGTATCGTGCATCCTAAAGAGAAGAATATGTTTA
1 AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
* * * * * *
1136308 TGGTGCCTTATCTTGAAAAGTATTGGGATTAGTAC-ATGTATTCGTGTTTGTCTTATTTAAGA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGA-GTATTCATGTTTGTCTTATTTAAGA
1136370 TGTTAGGATC
Statistics
Matches: 3385, Mismatches: 504, Indels: 76
0.85 0.13 0.02
Matches are distributed among these distances:
472 164 0.05
473 412 0.12
474 469 0.14
475 1033 0.31
476 894 0.26
477 412 0.12
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AAAAAAGCCTTTCTTGCGAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTA
TGGTGCCTAATCCTGAAAAGAATGGGGATTAGCACGAGTATTCATGTTTGTCTTATTTAAGAGAC
AAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGT
CATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTACG
AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TACTCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTA
GACTTTACTAAAATTGGCGG
Found at i:1142658 original size:13 final size:13
Alignment explanation
Indices: 1142640--1142665 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1142630 ACATTTGGTC
1142640 ATGTATCGATACA
1 ATGTATCGATACA
1142653 ATGTATCGATACA
1 ATGTATCGATACA
1142666 TCTTGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1142660 original size:33 final size:32
Alignment explanation
Indices: 1142618--1142685 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
1142608 CGTTACAAGC
1142618 CAATGTATCGATACAT-TTGGTCATGTATCGATA
1 CAATGTATCGATACATCTT-GT-ATGTATCGATA
1142651 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
1142683 CAA
1 CAA
1142686 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 18 0.53
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:1145277 original size:13 final size:13
Alignment explanation
Indices: 1145259--1145295 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1145249 GTAAACCCCT
*
1145259 TGTATCGATACAG
1 TGTATCGATACAA
1145272 TGTATCGATACAA
1 TGTATCGATACAA
*
1145285 TTTATCGATAC
1 TGTATCGATAC
1145296 TGAGAATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1157662 original size:445 final size:446
Alignment explanation
Indices: 1156837--1162387 Score: 2007
Period size: 475 Copynumber: 11.8 Consensus size: 446
1156827 TGAGCATATG
* *
1156837 TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCTATGTTTGTCTCTTTTGAG
1 TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTGAG
1156902 GCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCCTA
66 GCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCCTA
* * ** *
1156967 GTATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAGTATGGGGATTAG
131 ATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGATTAG
* * * ** *
1157032 TACATGGATTCGTGTTTGCCTAATTTAAGAGACAAACTTTGATTTTGTCATAAGCAATGGAAAGA
196 TA-ATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCATAAAAAATGGAAAAA
* *
1157097 AAAGCTTTTCTTGCGAAACTAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTCGG
260 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTCGA
* * * *
1157162 TTCCCAATCTTGAAAAGAATAGAGACTGTTATAAGAATTGATGCTTGTCTTATTTAAGGGATGAA
325 TTCCCAATCCTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAAGGGATGAA
* *
1157227 C-TTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCTCCTAATGACGAGAACGTA
390 CTTTTAATTTTAA-AAAAATAGGACAAAGAAAAGATTTCTCCTAATGACGAGAACGTA
* * * *** *
1157284 TTTATAGTGTCTACTCATAAAATGAAAGAAGATCTTTACTAGAATCCATATTTG-CATCTTTTGA
1 TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTC-TCTTTTGA
* * * * * * ***
1157348 GGCACGAACTTGGACTTTAGTAAAATT-AGTA-GGAAAAAAGGCTTTCTTGTGAAA-CAAAAGCA
65 GGCACGAACATAGACTTTACTAAAATTGA-CAGGGAAAAAAGCCTTTCCTACAAAATC-AAAGC-
* *
1157410 CC-AATATCATGTATCCTAATGAGAAGACTATGTTTATTGTGCCCAATCTTAAAAAGAATGGGGA
127 CCTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGA
* * * *
1157474 TTAGT-ATGAGTATTCATGTTTGCCTTATTTTAGAGTCTAACTTT-A-ATTCT-ATAAAAAATGA
192 TTAGTAATG-G-ATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCATAAAAAATG-
* * * * *
1157535 GAGAAAAAAATCTTTTCTTGTGACACCAAAGCATTAATGTCGTGTATCCTAATA-AAGGGAATGT
254 GA-AAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGAATGT
* * * * *
1157599 GTTTTTGATTCCTAATCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGTTTATGTTATTTAA
317 GTTTTCGATTCCCAATCCTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAA
* *
1157664 GGGATGGACTTTTATTTTTAAAAAAATAGGACAAAGAAAAGATTTCTATGCAAAAGAAAATTATC
382 GGGATGAACTTTTAATTTTAAAAAAATAGGACAAAGAAAAGA--T-T-T-C------------TC
1157729 AAAATCATTTATCCTATTGACGAG-A-GTA
430 -----C---TA----A-TGACGAGAACGTA
* * ** *
1157757 TGTTTATAGTGCCTAATCATAAAATGAAAAAAGATC-ACTACTGGAATCCATGTTTGTCTCTTTT
1 --TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAAC-ACAAGAATCCATATTTGTCTCTTTT
* * * * * *
1157821 GAGGCACGAACATAGACTTTTCTAAAATTGA-TGGAAAAAAAAACCTTTCTTGCAAAATC-AAGC
63 GAGGCACGAACATAGACTTTACTAAAATTGACAGG-GAAAAAAGCCTTTCCTACAAAATCAAAGC
* * ** * * * * *
1157884 ACTAGTATTGTGTATCCTAATGAGAATACTATGTTTAGGGTGCCTC-CTCCTGAAAAGAATGGGA
127 CCTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC-CAATCCTAAAAAGAATGGGG
* * * * * * *
1157948 ATTAGT-ATGAGTATTCTTGTTTGTCTTATTTAAGAGATAATCTTTCAT-TCTATCA-AAAACAA
191 ATTAGTAATG-G-ATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATAT-TCTCATAAAA-AA
* * * * * * * *
1158010 TGGAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCTTGTATCCTAATGAGGGGAATAT
252 TGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGT
* * * * ** * *
1158075 GTTTTTGGTTCCCAA-CCTTGAAAAGAATGGATACTGTTATGAGAATCAATGCTTGTCTTATTTA
317 GTTTTCGATTCCCAATCC-TGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTA
* * *
1158139 AGGGATGAAC-TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCA
381 AGGGATGAACTTTTAATTTTAA-AAAAATAGGACAAAGAAAAGA-TTT----C---------TC-
* *
1158203 TCAATATCATTTTTCCTAGAAAGGAGAACGTG
430 -C--TA--A-------T-G--ACGAGAACGTA
* * *** * * ** *
1158235 TTTATAGTGCCTACTCATAAAATG--A-AAGATCTTTACTAGAATCCATGTTTGTCAATTTCGAG
1 TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTGAG
* * * * * ***
1158297 GCAC-AGACTTGGACTTTAGTAAAATT-AGTA-GGAAAAAAGCCTTTCTTGTGAAA-CTAAAGCA
66 GCACGA-ACATAGACTTTACTAAAATTGA-CAGGGAAAAAAGCCTTTCCTACAAAATC-AAAGC-
* * * *
1158358 CC-AATATCATGTATCCTAATGACAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAAAGGGGA
127 CCTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGA
* * * * *
1158422 TTAGTATAAGTATTCATGTTTGCCTTATTTTAGAGAAAAACTTTG--ATTCT-ATAAAAAACTAG
192 TTAGTA-ATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCATAAAAAA-T--
* * * *
1158484 GGGAAAAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTAATA-AAGGGAATGT
253 GGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGAATGT
* * * * * * *
1158548 GATTTT-GGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGACAATCGATGTTTGA-GTTACTT
317 G-TTTTCGATTCCCAATCCTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTT-ATCTTATTT
* *
1158611 AAGGGATAAACTTTT-ATTTTAAGAAAAATTAGAGCAAGAAAACATTTCCATGCAAAAGAAAATC
380 AAGGGATGAACTTTTAATTTTAA-AAAAA-T--AG---G-----------A--C-AAAGAAAA-G
* **
1158675 ATCAATATCATTTATCCTAATGATGAGAA-AAA
423 AT---T-TC-----TCCTAATGACGAGAACGTA
** * * *** * * * *
1158707 TGGTTATTGTGCTTAATCAAAAAATGAAAGAAGATCGTTACTAGAATCTATGTTTGTCTCATTTG
1 T--TTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTG
* ** * * *
1158772 AGGCACGAATATAGACTTTACTAAAATTG-GTGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCAC
64 AGGCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCC
* * * * * * *
1158836 TAGTATCATATATCCTAATAAGAAGACTATGTTTATAGTGCCTC-ATCATGAAAATAATGGGGAT
129 TAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC-CAATCCTAAAAAGAATGGGGAT
* * * * * *
1158900 TAGT-ATGAGTATTTATGTTTGTCTTATTTAAGAGATAATCTTTG--ATTCGATCA-AAAACGAT
193 TAGTAATG-G-ATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTC--TCATAAAA-AAT
* * * * * * *
1158961 GGAAAGAAAAGCTTTTCTTGCGACACTAGAGCATCAATGTCATGTCTCCTAATGAAAGGAATGTG
253 GGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTG
* * * * **
1159026 TTTTTC-ATTCCCAA-CTTTG-AAAGAGTGGAGACTATTATGAGAATCGATGCTTATCTTATTTA
318 -TTTTCGATTCCCAATC-CTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTA
* * * *
1159088 AGGGATAAAC-TTTGATTTTAAGGAAAATAGTG-TAAAGAAAAGATTTCCATGCAAAAGAAAATC
381 AGGGATGAACTTTTAATTTTAA-AAAAATAG-GACAAAGAAAAGATTT-C-T-C----------C
* * *
1159151 ATCAAT-ATCATTTATCTTAATATGGGGAATA
431 -T-AATGA-C---GA----GA-A---CG--TA
* * * ** * *
1159182 TGTTTAAAGTGCCTACTCATAAAATGAAAGAAGATTATTACTAGAATCCATATTTGTCTCTTTTA
1 --TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTG
* * * * * * ** *
1159247 AGGCATGAACTTAGACTTTACTAAAATTGGCA-AGTAAAAAGCCTTTCTTATGAAATTAAAGCAC
64 AGGCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGC-C
* * * ** * * * **
1159311 C-ATTATCGTGTATCCAAATGAGAAGACTAAATTGATGGTGCCTAGTCCGGAAAAGAATGGGGAT
128 CTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGAT
* * * * * *
1159375 TAGCATAA-GTG-TTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTTTAT-AAAAAATAATG
193 TAG--TAATG-GATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCATAAAA-AATG
* * * * * * * *
1159437 GAAAGAAAAGC-TTTCTTGCTACACTAAAGCTTTAATGTCATGTATCAT-AAGAAAGGGAATGAG
254 GAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAG-AAGGGAATGTG
* * * * * * *
1159500 TTTTTGGTTCCCAA-CCATGAAAAAAATGGAGACTATTACGAGAATCGACGCTTATCTTATTTAA
318 TTTTCGATTCCCAATCC-TGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAA
* * * *
1159564 GGGATGAAC-TTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAATTAT
382 GGGATGAACTTTTAATTTTAA-AAAAATAGGACAAAGAAAAGATTTC--T-C-------------
** * *
1159628 CAATATCATTTGTCCTAATAATGAGCATA
430 C--TA--A--TG-----ACGA-GAACGTA
* * * * ** *
1159657 TGTTTATAGTGCCTAATCA-AAAATGAAAGAATATCAATACTAGAATTTATGTTTGTCTCTTTTG
1 --TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTG
* * * * *
1159721 AGGTATGAACATAGACTTTACTAAAATT-AGCAAGGAAAAAAGCCTTTCTTGCAAAATCAAAGCC
64 AGGCACGAACATAGACTTTACTAAAATTGA-CAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCC
* * * * * *** ** * *
1159785 CCAGTATCGTGTATCCTAATGGGAAGACTTTGTTTAACATGCCTTATCCTGAAAAGTATGGGGAT
128 CTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGAT
* * * * * * * * * * *
1159850 TGGTACGTGTATTCGTGTTTGACTTATTTAAAAGACAAACTTTGAT-TCTGTCA-GAAGAAGGGA
193 TAGTA-ATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATAT-TCTCATAAAAAATGGA
* * * * **
1159913 AAGAAAAGCTTTTCTTGCGACACTAAGGCATCAATGTCATGTATCCTAAAGAAAAGAATGTGTTT
256 AAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTT
* * * * * * * *
1159978 TTGGTTCCCAA-CCTTGAAAAGAATGGAGACTATTATAAGAATCGAAGCTTGTCTTATTTAAGTG
321 TCGATTCCCAATCC-TGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAAGGG
* * *
1160042 ATGAAC-TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAA
385 ATGAACTTTTAATTTTAA-AAAAATAGGACAAAGAAAAGATTT-----C---------TC--C--
* * *
1160106 TATTATTTATCCTAATGAGAAGAATGTG
431 TA--A-TGA--C------G-AGAACGTA
* ** ** * * **** * * *
1160134 TTTATAGTATCTACCCATAAAATGGAAGAAGAACTTTTCTAGAATCCATGTTTGTCAT-TTTTGG
1 TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTC-TCTTTTGA
* * * * **
1160198 GGCACGAACTTGGACTTTAATAAAATT-AGTA-GGAAAAAAGCCTTTCCTGGAAAA-CTAAAGCC
65 GGCACGAACATAGACTTTACTAAAATTGA-CAGGGAAAAAAGCCTTTCCTACAAAATC-AAAGCC
* * *
1160260 CCAATATCATGTATCCTAATGAGAAGACTATGTTTA--CTGCACCTAATCTTAAAAA-AATGGGG
128 CTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGC-CC-AATCCTAAAAAGAATGGGG
* * * ** * * *
1160322 ATTAGTACGA-GTATTCATGTTTGCCTTATTTTAGAGATGAACTTT--TATT-TTATGAAAAACG
191 ATTAGTA--ATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCATAAAAAATG
* * * * *
1160383 AGAGAAAAAAATCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTAATA-AAGGAAATG
254 -GA-AAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGAATG
* * * *
1160447 TGTTTTTGATTCCCAATCCTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTGTTATTTA
316 TGTTTTCGATTCCCAATCCTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTA
* * * *
1160512 AGGGATGAACCTATATTTTTAAAAAGCAGACAAAGAAAAGATTTCTACTTAAAAGAAAATCATCA
381 AGGGATGAACTTTTAATTTT-AAAA--A-A-ATAG----G------AC---AAAG---------A
* * *
1160577 AAATGATTTATCCTATTGATGAGAA--TAA
419 AAA-GATTTCTCCTAATGACGAGAACGT-A
* * * * * * *
1160605 GTTTATAGCGCCTAATCATAAAATGAAAGTAGAT-AATTACTAGAATCCATGTTCGTCTCTTTTG
1 -TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAA-CACAAGAATCCATATTTGTCTCTTTTG
* * * * * *
1160669 AGGCACGAACATAGACTTTACTAAAATTGGCA--AAAAAAAACCTTTCTTGCAAAATCAAAGCAC
64 AGGCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCC
* * * * * **
1160732 TAGTATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTC-CTCCTGAAAAGAATAGAAAT
129 TAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC-CAATCCTAAAAAGAATGGGGAT
* * * * *
1160796 TAGTACGA-GTATTCATGTTTGTCTTATTTAAGAGATAATCTTT--TATTCT-ATCAAAAATAAT
193 TAGTA--ATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCAT--AAAA-AAT
* * * *
1160857 GGAAAGAAAAA-CTTTTGTT-CCAATACTAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATA
253 GGAAA-AAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATG
* * * * * *
1160920 CGTTTTCGGTTCCTAA-CCTTGAAAAGAATGGAGACTGTTATAAGAATCGATGCTTGTCTTATTT
316 TGTTTTCGATTCCCAATCC-TGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTT
* * * *
1160984 AGGGGATGAAC-TTTGATTTTAAGGAAAATAGGGTAAAGAAAATATTTCCATGCAAAAGAAAATC
380 AAGGGATGAACTTTTAATTTTAA--AAAA-A---T--AG----------GA--C-AAAGAAAA-G
* * * ** *
1161048 ATCAATATCATTTATCCTAATAATGAGCATATG
423 AT---T-TC-----TCCTAATGACGAGAACGTA
* * * * *
1161081 TTTATAGTGCCTAACCATAAAATGAAATAAGATCAATACAAGAATCTATGA-TTGTCTCTTTTGA
1 TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCAT-ATTTGTCTCTTTTGA
* * *
1161145 GGCATGAACATAGACTTTACTAAAATTGGCAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCCC
65 GGCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCCT
* ** * * *
1161210 AGTATTGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTC-ATCCTGAAAAGTATGGGGATT
130 AATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC-CAATCCTAAAAAGAATGGGGATT
* * * **
1161274 AGTACATGGATTCGTGTTTGTCTAATTTAAGAGACAAACTTTGAT-TCTGTCATAAGCAATGGAA
194 AGTA-ATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATAT-TCTCATAAAAAATGGAA
* * *
1161338 AGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTATAAAGAAGGGAATGTGTT
257 AAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCC--TAAAGAAGGGAATGTGTT
* * * * ** *
1161403 TTCGGTTCCCAA-CCTTGAAAAGAATGGAGACTGTTATAGGAATTAATGCTTTTCTTATTTAAGG
320 TTCGATTCCCAATCC-TGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAAGG
* * * * *
1161467 GATGAGC-ATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAACAAAAATCATCA
384 GATGAACTTTTAATTTTAA-AAAAATAGGACAAAG--AA-A-----A-G------------AT--
*
1161531 ATGTCATTTATCCTAATGAAGAGAACGTA
425 -T-TC-----TCCTAATGACGAGAACGTA
* * *** * * *
1161560 TTTATAGTGTC-AACTCATAAAATGAAAGAAGATCTTTACTAGAATCCATGTTTGTATCTTTTGA
1 TTTAGAGTGCCTAA-TCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTGA
* * * * * * * ***
1161624 AGCATGAACTTGGACTTTAGTAAAATT-AGTA-GGAAAAAAGCCTTTCTTGTGAAA-CTAAAGCA
65 GGCACGAACATAGACTTTACTAAAATTGA-CAGGGAAAAAAGCCTTTCCTACAAAATC-AAAGC-
* * *
1161686 CC-AATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTAAAAAGAATGGGCA
127 CCTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGA
*
1161750 TTAGT-ATGAGCATTCATGTTTGCCTTATTTTAA-AGACAAACTTT-A-ATTCT-ATGAAAAACG
192 TTAGTAATG-G-ATTCATGTTTGCC-TAATTTAAGAGACAAACTTTGATATTCTCAT-AAAAA--
* * * * * *
1161810 AGGGAAAAAAAA-CTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATACTAATA-AAGGGAAT
251 ATGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAA-AGAAGGGAAT
* * * * * * * *
1161873 GTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAGACTGTTACGAGAATTGAAGTTTGTGTTATTT
315 GTGTTTTCGATTCCCAATCCTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTT
* ** *
1161938 AAGGGATGAACTCTT-ATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATC
380 AAGGGATGAACTTTTAATTTTAA-AAAAATAGGACAAAGAAAAGATTT-C-T-C-----CTAATG
* *
1162002 ATCAATATCATTCATGCTAATGA
436 A-CGAGA--A--C--G----T-A
** *
1162025 TTAGAATATGCCTATTGTGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATATTTGT
1 TT----TA-G---A--GTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGT
* * * ** * *
1162090 CTTTTTTGAGGCACGAACATAAACTTTTCTAAAATTG-GTGGGAAAAAAGCCTTTCTTGCAAAAT
56 CTCTTTTGAGGCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAAT
* * * * *
1162154 TAAAGTACC-AATATCATGTAT-CTTATTAGAAGACTATGTTTATAGTGCCTC-ATCCTAAAAAG
121 CAAAG-CCCTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC-CAATCCTAAAAAG
* * * * *
1162216 AATGGGGATTAGTACGA-GTATTCATGTTTGTC-ATATTTAAGAGATAATC-TTG-GATTCT-AT
184 AATGGGGATTAGTA--ATGGATTCATGTTTGCCTA-ATTTAAGAGACAAACTTTGATATTCTCAT
* * * * * * *
1162276 CAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATATCTTGTCTCCTAATGA
246 -AAAAA--ATGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAGA
* * * * * *
1162341 AGGGAACGTGTTTTTGGTTCCCAA-CCTTAAAAAGAATGGAGATTGTT
308 AGGGAATGTGTTTTCGATTCCCAATCC-TGAAAAGAATAGAGACTGTT
1162388 GCCTAATCCC
Statistics
Matches: 3996, Mismatches: 699, Indels: 790
0.73 0.13 0.14
Matches are distributed among these distances:
443 8 0.00
444 8 0.00
445 137 0.03
446 124 0.03
447 83 0.02
448 4 0.00
449 2 0.00
450 2 0.00
451 3 0.00
452 2 0.00
453 4 0.00
454 4 0.00
455 2 0.00
456 9 0.00
458 1 0.00
459 5 0.00
460 4 0.00
461 5 0.00
462 3 0.00
464 2 0.00
465 3 0.00
466 8 0.00
467 4 0.00
468 1 0.00
469 7 0.00
470 12 0.00
471 79 0.02
472 174 0.04
473 419 0.10
474 436 0.11
475 1239 0.31
476 335 0.08
477 450 0.11
478 144 0.04
479 215 0.05
480 6 0.00
481 4 0.00
482 1 0.00
483 2 0.00
484 3 0.00
485 2 0.00
486 2 0.00
487 4 0.00
488 3 0.00
489 4 0.00
492 5 0.00
493 10 0.00
494 1 0.00
496 1 0.00
497 1 0.00
501 4 0.00
502 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (446 bp):
TTTAGAGTGCCTAATCATAAAATGAAAGAAGATCAACACAAGAATCCATATTTGTCTCTTTTGAG
GCACGAACATAGACTTTACTAAAATTGACAGGGAAAAAAGCCTTTCCTACAAAATCAAAGCCCTA
ATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGAATGGGGATTAG
TAATGGATTCATGTTTGCCTAATTTAAGAGACAAACTTTGATATTCTCATAAAAAATGGAAAAAA
AAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTCGAT
TCCCAATCCTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTTATCTTATTTAAGGGATGAAC
TTTTAATTTTAAAAAAATAGGACAAAGAAAAGATTTCTCCTAATGACGAGAACGTA
Found at i:1158239 original size:476 final size:473
Alignment explanation
Indices: 1157260--1174485 Score: 13249
Period size: 476 Copynumber: 36.3 Consensus size: 473
1157250 CAAAGAAAAG
* * * * * * * *
1157260 ATTTCTCCTAATGACGAGAACGTATTTATAGTGTCTACTCATAAAATGAAAGAAGATCTTTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * *
1157325 GAATCCATATTTG-CATCTTTTGAGGCACGAACTTGGACTTTAGTAAAATTAGTAGG-AAAAAAG
66 GAATCCATGTTTGTC-TCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAG
* * *
1157388 GCTTTCTTGTGAAACA-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATTGTGC
128 CCTTTCTTG-CAAA-ATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGC
* * * * * * *
1157452 CCAATCTTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTTAGAG-TCTAACT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGAT-AAACT
* * * * * * *
1157516 TTAATTCTAT--AAAA-AATGAGAGAAAAAAATCTTTTCTTGTGACACCAAAGCATTAATGTCGT
255 TTGATTCTATCAAAAACAATG-GA-AAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCAT
* * * **
1157578 GTATCCTAATAAAGGGAATGTGTTTTTGATTCCTAATCCTGAAAAGAATGGAGACTGTTACAAGA
318 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGA
* * * * * *
1157643 ATCGATGTTTATGTTATTTAAGGGATGGACTTTTATTTTTAA-AAAAATAGGACAAAGAAAAGA-
382 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGAAAAATAGGGCAAAGAAAAGAT
* *
1157706 TTTCTATGCAAAAGAAAATTATCAAAATC
446 TTTC-ATGCAAAAGAAAATCATCAATATC
* * * * * * * *
1157735 ATTTATCCTATTGACGAGAGTATGTTTATAGTGCCTAATCATAAAATGAAAAAAGATCACTACTG
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * *
1157800 GAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTTTTCTAAAATTGATGGAAAAAAAAAC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGG-AAAAAAAGC
* * * ** * ** *
1157865 CTTTCTTGCAAAATCAAGCACTAGTATTGTGTATCCTAATGAGAATACTATGTTTAGGGTGCCTC
129 CTTTCTTGCAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
* * * * * *
1157930 CTCCTGAAAAGAATGGGAATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGATAATCTTTCA
194 ATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* *
1157995 TTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCTTGTATCC
259 TTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCC
* * * *
1158060 TAATGAGGGGAATATGTTTTTGGTTCCCAACCTTGAAAAGAATGGATACTGTTATGAGAATCAAT
324 TAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
1158125 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACG
388 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATG
1158190 CAAAAGAAAATCATCAATATC
453 CAAAAGAAAATCATCAATATC
* * * *
1158211 ATTTTTCCTAGA-AAGGAGAACGTGTTTATAGTGCCTACTCATAAAATG--A-AAGATCTTTACT
1 ATTTATCCTA-ATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACT
** * * *
1158272 AGAATCCATGTTTGTCAATTTCGAGGCAC-AGACTTGGACTTTAGTAAAATTAGTAGG-AAAAAA
65 AGAATCCATGTTTGTCTCTTTTGAGGCACGA-ACTTAGACTTTACTAAAATTA-T-GGAAAAAAA
* * * *
1158335 GCCTTTCTTGTGAAACTAAAGCACCAATATCATGTATCCTAATGACAAGACTATGTTTATGGTGC
127 GCCTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGC
** * ** * * *
1158400 CTAATCCAAAAAAGAAAGGGGATTAGTATAAGTATTCATGTTTGCCTTATTTTAGAGAAAAACTT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* ** * * *
1158465 TGATTCTATAAAAAACTAGGGGAAA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCGTGT
256 TGATTCTATCAAAAAC-AATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* * * *
1158529 ATCCTAATAAAGGGAATGTGATTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGACAAT
320 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAAT
* ** * * * * *
1158594 CGATGTTTGAGTTACTTAAGGGATAAACTTTTATTTTAAGAAAAATTAGAGC-AAGAAAACATTT
384 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAA-TAGGGCAAAGAAAAGATTT
*
1158658 CCATGCAAAAGAAAATCATCAATATC
448 TCATGCAAAAGAAAATCATCAATATC
* * ** * * * * *
1158684 ATTTATCCTAATGATGAGAAAAATGGTTATTGTGCTTAATCAAAAAATGAAAGAAGATCGTTACT
1 ATTTATCCTAATAAGGAG-AATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACT
* * * *
1158749 AGAATCTATGTTTGTCTCATTTGAGGCACGAA-TATAGACTTTACTAAAATTGGTGGGAAAAAAG
65 AGAATCCATGTTTGTCTCTTTTGAGGCACGAACT-TAGACTTTACTAAAATT-ATGGAAAAAAAG
* * * *
1158813 CCTTTCTTGCAAAATCAAAGCACTAGTATCATATATCCTAATAAGAAGACTATGTTTATAGTGCC
128 CCTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCC
* * * * * *
1158878 TCATCATGAAAATAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGATAATCTTT
192 TAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTT
* * * *
1158943 GATTCGATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACTAGAGCATCAATGTCATGTCT
257 GATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTAT
* ** * * *
1159008 CCTAATGAAAGGAATGTGTTTTTCATTCCCAACTTTG-AAAGAGTGGAGACTATTATGAGAATCG
322 CCTAATGAAGGGAATGTGTTTTTGGTTCCCAAC-CTGAAAAGAATGGAGACTGTTATGAGAATCG
* * * * * *
1159072 ATGCTTATCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGTGTAAAGAAAAGATTTCCA
386 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA
1159137 TGCAAAAGAAAATCATCAATATC
451 TGCAAAAGAAAATCATCAATATC
* * * * * * *
1159160 ATTTATCTTAATATGGGGAATATGTTTAAAGTGCCTACTCATAAAATGAAAGAAGATTATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * *
1159225 GAATCCATATTTGTCTCTTTTAAGGCATGAACTTAGACTTTACTAAAA-T-TGGCAAGTAAAAAG
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTATGG-AA--AAAAAG
* * * * ** * *
1159288 CCTTTCTTATG-AAATTAAAGCACCATTATCGTGTATCCAAATGAGAAGACTAAATTGATGGTGC
128 CCTTTC-T-TGCAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGC
* * * ** * * *
1159352 CTAGTCCGGAAAAGAATGGGGATTAGCATAAGTGTTCATGTTTGTCTTATTTGAGAGACAAACTT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * * * * *
1159417 TGATTTTATAAAAAATAATGGAAAGAAAAGC-TTTCTTGCTACACTAAAGCTTTAATGTCATGTA
256 TGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
* * * * *
1159481 TCATAA-GAAAGGGAATGAGTTTTTGGTTCCCAACCATGAAAAAAATGGAGACTATTACGAGAAT
321 TCCTAATG-AAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAAT
* * * *
1159545 CGACGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGA-TTT
384 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTT
*
1159609 CAATGCAAAAGAAAATTATCAATATC
449 C-ATGCAAAAGAAAATCATCAATATC
* * * * * *
1159635 ATTTGTCCTAATAATGAGCATATGTTTATAGTGCCTAATCA-AAAATGAAAGAATATCAATACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
** * * * *
1159699 GAATTTATGTTTGTCTCTTTTGAGGTATGAACATAGACTTTACTAAAATTA-GCAAGGAAAAAAG
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTATG---GAAAAAAAG
* * * * * *
1159763 CCTTTCTTGCAAAATCAAAGCCCCAGTATCGTGTATCCTAATGGGAAGACTTTGTTTA-ACATGC
128 CCTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATA-GTGC
* * * * * * * *
1159827 CTTATCCTGAAAAGTATGGGGATTGGTACGTGTATTCGTGTTTGACTTATTTAAAAGACAAACTT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * * * *
1159892 TGATTCTGTC-AGAAGAAGGGAAAGAAAAGCTTTTCTTGCGACACTAAGGCATCAATGTCATGTA
256 TGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
* ** * *
1159956 TCCTAAAGAAAAGAATGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTATTATAAGAATC
321 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATC
* * * *
1160021 GAAGCTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
385 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTC
* *
1160086 ACGCAAAAGAAAATCATCAATATT
450 ATGCAAAAGAAAATCATCAATATC
* * ** ** * * * *
1160110 ATTTATCCTAATGAGAAGAATGTGTTTATAGTATCTACCCATAAAATGGAAGAAGAACTTTTCTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * *
1160175 GAATCCATGTTTGTCAT-TTTTGGGGCACGAACTTGGACTTTAATAAAATTAGTAGG-AAAAAAG
66 GAATCCATGTTTGTC-TCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAG
* * * **
1160238 CCTTTCCTGGAAAACTAAAGCCCCAATATCATGTATCCTAATGAGAAGACTATGTTTACT-GCAC
128 CCTTTCTTGCAAAA-TAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTA-TAGTGC
* * * * *
1160302 CTAAT-CTTAAAAAAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTTAGAGATGAACTT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * * * * * * *
1160366 TTATTTTATGAAAAACGA-GAGAAA-AAAATCTTTTCTTGTGACACCAAAGCATCAATGTCGTGT
256 TGATTCTATCAAAAACAATG-GAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* * * **
1160429 ATCCTAATAAAGGAAATGTGTTTTTGATTCCCAATCCTGAAAAGAATGGAGACTGTTACAAGAAT
320 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAAT
* * * ** *
1160494 CGATGCTTGTGTTATTTAAGGGATGAACCTAT-ATTTTTA-AAAAGCA-GACAAAGAAAAGA-TT
384 CGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTT
* * *
1160555 TCTACT-TAAAAGAAAATCATCAAAATG
448 TC-A-TGCAAAAGAAAATCATCAATATC
* * * ** * * *
1160582 ATTTATCCTATTGATGAGAATAAGTTTATAGCGCCTAATCATAAAATGAAAGTAGATAATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * *
1160647 GAATCCATGTTCGTCTCTTTTGAGGCACGAACATAGACTTTACTAAAA-T-TGGCAAAAAAAAAC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTATGG--AAAAAAAGC
* * * *
1160710 CTTTCTTGCAAAATCAAAGCACTAGTATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCT
129 CTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
** * ** * *
1160775 CCTCCTGAAAAGAATAGAAATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAATCTTTT
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* * * * * *
1160840 ATTCTATCAAAAATAATGGAAAGAAAAACTTTTGTTCCAATACTAAAGCATCAATGTCATGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* ** * * *
1160905 CTAAAGAAGGGAATACGTTTTCGGTTCCTAACCTTGAAAAGAATGGAGACTGTTATAAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * *
1160970 TGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAATATTTCCAT
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAT
1161035 GCAAAAGAAAATCATCAATATC
452 GCAAAAGAAAATCATCAATATC
* * * * * * *
1161057 ATTTATCCTAATAATGAGCATATGTTTATAGTGCCTAACCATAAAATGAAATAAGATCAATACAA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * *
1161122 GAATCTATGATTGTCTCTTTTGAGGCATGAACATAGACTTTACTAAAATTGGCA-GGGAAAAAAG
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT---ATGGAAAAAAAG
* * * * **
1161186 CCTTTCCTACAAAATCAAAGCCCCAGTATTGTGTATCCTAATGAGAAGACTATGTTTA-AGGTGC
128 CCTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATA-GTGC
* * * * * *
1161250 CTCATCCTGAAAAGTATGGGGATTAGTAC-ATGGATTCGTGTTTGTCTAATTTAAGAGACAAACT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGA-GTATTCATGTTTGTCTTATTTAAGAGATAAACT
* * *
1161314 TTGATTCTGTCATAAGCAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
255 TTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* *
1161379 ATCCTATAAAGAAGGGAATGTGTTTTCGGTTCCCAACCTTGAAAAGAATGGAGACTGTTAT-AGG
320 ATCC--TAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGA-G
** * * * *
1161443 AATTAATGCTTTTCTTATTTAAGGGATGAGCATTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
381 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGAT
* * *
1161508 TTCCACGCAAACA-AAAATCATCAATGTC
446 TTTCATGCAAA-AGAAAATCATCAATATC
* * * *
1161536 ATTTATCCTAATGAA-GAGAACGTATTTATAGTGTC-AACTCATAAAATGAAAGAAGATCTTTAC
1 ATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAA-TCATAAAATGAAAGAAGATCATTAC
* * * * *
1161599 TAGAATCCATGTTTGTATCTTTTGAAGCATGAACTTGGACTTTAGTAAAATTAGTAGG-AAAAAA
64 TAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAA
* *
1161663 GCCTTTCTTGTGAAACTAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGC
127 GCCTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGC
* * * * * *
1161728 CTAATCCTAAAAAGAATGGGCATTAGTATGAGCATTCATGTTTGCCTTATTTTAA-AGACAAACT
191 CTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTA-TTTAAGAGATAAACT
* * * * * * * * *
1161792 TTAATTCTATGAAAAACGAGGGAAA-AAAAACTTTTCTTGTGACACCAAAGCGTCAATGTCGTGT
255 TTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* * * *
1161856 ATACTAATAAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAGACTGTTACGAGAAT
320 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAAT
* * * * *
1161921 TGAAGTTTGTGTTATTTAAGGGATGAACTCTT-ATTTTAAGAAAAATAGGACAAAGAAAAGATTT
384 CGATGCTTGTCTTATTTAAGGGATGAACT-TTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTT
*
1161985 CCATGCAAAAGAAAATCATCAATATC
448 TCATGCAAAAGAAAATCATCAATATC
* * * ** * ** *
1162011 ATTCATGCTAATGATTAGAATATGCCTATTGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * * *
1162076 GAATCCATATTTGTCTTTTTTGAGGCACGAACATAAACTTTTCTAAAATTGGTGGGAAAAAAGCC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGGAAAAAAAGCC
* * * *
1162141 TTTCTTGCAAAATTAAAGTACCAATATCATGTAT-CTTATTAGAAGACTATGTTTATAGTGCCTC
130 TTTCTTGCAAAA-TAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
* * * *
1162205 ATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCATATTTAAGAGATAATCTTGGA
194 ATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * * *
1162270 TTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATATCTTGTCTCC
259 TTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCC
* * *
1162335 TAATGAAGGGAACGTGTTTTTGGTTCCCAACCTTAAAAAGAATGGAGATTGTTGCCTAATCCCAA
324 TAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTG-T---T-AT-----
* * * * * ** * * *
1162400 AAAGAATGGGGATTAGTACGAGTATTCATGTTTGCATTCTTTTAGAGACAAACTTTAATTCTACG
378 ---G-A----GA--A-T-C--G-ATGC-T-TGT-C-TTATTTAAGGGATGAACTTTGATTTTAAG
* * * ** * ** * * *
1162465 AAAAACGAGGG--AA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTT
424 AAAAA-TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * * * * * *
1162513 GTGTATCCTAATAAAGG-GAATGTGTTTTTGGTTCCCAATCTTGAAAA-GAATGGAGA-CTGTTA
1 ATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCAT-AAAATGAAAGAAGATC-ATTA
* * * * * ** ** *
1162575 CGT-GAATCGATGTTTGTGT-TATTTAAGGGATGAACTTTTA-TTTAAAGAAAAATA-GGACAAA
63 C-TAGAATCCATGTTTGTCTCT-TTTGAGGCACGAACTTAGACTTT-ACTAAAATTATGG--AAA
* * * * ** ** * * * * * *
1162636 GAAAAG-ATTTCCATGCAAAAGAAAATCATTAATGCCATTTATGCTAATGAGGAGAATGTGATTA
123 -AAAAGCCTTT-CTTGCAAAA-TAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * ** * * * * * *
1162700 TAGTGCTTAATCAT-AAAATGAAAT-AAGATCATTACTA-CATTCCATGTTTATCTCT-TTTGAG
185 TAGTGCCTAATCCTGAAAA-G-AATGGGGATTAGTACGAGTATT-CATGTTTGTCT-TATTTAAG
** * * **** * * * * * * *
1162761 -GCACGAACATAGACTTC-A-CTAAAATTGCTGGGAA-AAAAGCCTTTCCTAC-AAAATCAAAGA
246 AG-ATAAACTTTGA-TTCTATC-AAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACT-AAAGC
* ** * * * * ** * * *
1162821 ACCGGTGTCGTGTATCCTAATG-A-GAACACTATGTTTATAATGCCTCATCCTGAAAAGAATGGG
307 ATCAATGTCATGTATCCTAATGAAGGGA-A-TGTGTTTTTGGTTCC-CAACCTGAAAAGAATGGA
* * * * * * * **
1162884 GATTAG-TATGAGTATTC-ATGTTTGTCTTGTTTAAGAG-TTAATCTTTGATTCTATCAAAAATG
369 GACT-GTTATGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAGAAAAAT-
* * * **** *
1162946 ATGG-AAAGAAAAGCTTTTCTTGCGACCCTAAAA-CATCAATGTC
430 AGGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATC
* * * * * * * ** * * *
1162989 ATGTATCCTAGTGAAGG-GATTAG-GTTTTTGGTTCCCAATTTTGAAAA-GAATGGAGA-CTGTT
1 ATTTATCCTAAT-AAGGAGAAT-GTGTTTATAGTGCCTAATCAT-AAAATGAAAGAAGATC-ATT
* * * * * * * * ** *
1163050 ACGAGAATCGATGCTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAG
62 ACTAGAATCCATGTTTGTCTCT-TTTGAGGCACGAACTTAGACTTT-ACTAAAATTATGG-AAA-
* * * * * * * * * * * * *
1163113 AAAAG-ATTTCCGTGCAAAAGAAAATCATCAATATCGTTTATCTTAATAAGGAGAATTTATTTAT
123 AAAAGCCTTT-CTTGCAAAA-TAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * ** * * * * * *
1163177 AGTGCTTAATCATGAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCT-CTTAAG-GCA
186 AGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCT-TATTTAAGAG-A
* * **** * * * * *
1163240 TGAACTTAGACTT-TA-CTAAAATTGGTGGGAA-AAAAGCCTTTCTTGC-AAAATCAAAGCACCA
249 TAAACTTTGA-TTCTATC-AAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACT-AAAGCATCA
* * * * * * * * * * *
1163301 GTATCATGTATCCTAA-GGAGAGGACTATGTTTATAGTGCCTCATCCTGAAAAGAATGGGGATTA
311 ATGTCATGTATCCTAATGAAG-GGAATGTGTTTTTGGTTCC-CAACCTGAAAAGAATGGAGACT-
* * ** * * ** *
1163365 G-TATGTGTAGTC-ATTTTTGTCCTATTTAAGAGACAAACTTTGATTTTATGAACAGCAAT--GG
373 GTTATGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAA-A--AATAGGG
* * * * ** ** * *
1163426 -AAGGAAAAGCTTTTCTTG-AGACACTAAAGGATCAATGTT
434 CAAAGAAAAGATTTTCATGCA-AAAGAAAATCATCAATATC
* ** * * * * * * * *
1163465 ATGTATCCTAATAAAGG-GAATGCATTT-TCATTTCCCAACCTTGAAAA-GAATGGAGA-CTGTT
1 ATTTATCCTAAT-AAGGAGAATGTGTTTAT-AGTGCCTAATCAT-AAAATGAAAGAAGATC-ATT
* * * * * * * ** *
1163526 A-TGAGAATCGATGCTTGT-TTTATTTAAGAG-ATGAACTTTGATTTTAAGGAAAA-TAGGGCAA
62 ACT-AGAATCCATGTTTGTCTCT-TTTGAG-GCACGAACTTAGACTTT-ACTAAAATTATGG-AA
* * * *
1163587 AGAAAA-CATTTTCGTGCAAAAGAAAAGATTTTCGCGCAAAAGAAAATCGTCAATATCATTTATC
122 A-AAAAGC-CTTTCTTGC------AAA-A---T------AAAG--CA-C--CAATATCATGTATC
* ** * * * * * * * * * *
1163651 ATAATGAGGCGAATGTGTTTATAGTGCCTACTCATGAAATGAA---AGATCT-TTACTAGAATCC
164 CTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGAT-TAGTACGAGTATTC
* * ** * ** * *
1163712 ATGCTTATCTCTTA--TGAG-GCACGAACTTGGA--CTAGT-AAAATTAGTAGG--AGAAAAGCC
228 ATG-TT-TGTCTTATTTAAGAG-ATAAACTTTGATTCTA-TCAAAAACAAT-GGAAAGAAAAGCT
* * * * ** * * * *
1163769 TTTCTTGTGAAACTAAAG-TTCCAATATCATGTATCCTAATG-AGAAAACTATATTTATGGTGCC
288 TTTCTTGCGACACTAAAGCAT-CAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTTTGGTTCC
* * * * * ** * * * * * * *
1163832 TAGTCCTAAAAAGAATGGGGATTAG-TACAAGTAATC-ATGTTTGCCATATTTTAGAGA-CACAT
351 CA-ACCTGAAAAGAATGGAGACT-GTTATGAG-AATCGATGCTTGTCTTATTTAAGGGATGA-AC
* * * * * * * * ** * *
1163894 TTTAATTCTATGAAAAACGAGGG-AAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
412 TTTGATTTTAAGAAAAA-TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * * * * *
1163955 ATGTATCCTAATAAAGG-GAATGGGTTTTTGGTTTCC-AATCCTGAAAA-GAATGGAGGT-AGTT
1 ATTTATCCTAAT-AAGGAGAATGTGTTTATAG-TGCCTAATCAT-AAAATGAAAGAAGATCA-TT
* * * * * ** * * *
1164016 A-TGAGAATCGATGTTTGTGT-TATTTAAGGGATGAACTTTTATTTTTA-GAAAAATA-GGACAA
62 ACT-AGAATCCATGTTTGTCTCT-TTTGAGGCACGAACTTAGA-CTTTACTAAAATTATGG--AA
* * * * * * * * * * *
1164077 AGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATGCTAATAAGGAGAATGTGTTT
122 A-AAAAGCCTTT-CTTGCAAAA-TAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * ** * * * * * * *
1164141 ATAGTGCTTAA-CCAT-AAAATGAAAGAAGATCATTATTCGA--ATCCGTGTTTATCTCT-CTTG
184 ATAGTGCCTAATCC-TGAAAA-GAATGGGGATTAGTA--CGAGTATTCATGTTTGTCT-TATTTA
* * * **** * * *
1164201 AG-GCATGAACATAGACTT-TA-CTAAAATTGGTGGGAAA-AAAGGC-TTTCTTGC-AAAATCAA
244 AGAG-ATAAACTTTGA-TTCTATC-AAAAACAAT-GGAAAGAAAAGCTTTTCTTGCGACACT-AA
* * * * * * * * * * *
1164260 AACA-CTAGTATCGTGTATCCTAACGAGAGGG-CTATGTTTATAGTGCCTCATCCT-AAAAGGAA
304 AGCATC-AATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCC-CAACCTGAAAA-GAA
* * * * * * **
1164322 TGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGAT-AATCTTTGATTCTATCAAA
365 TGGAGACT-GTTATGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAGAAA
* * * **** *
1164384 AATGATGG-AAAGAAAAGCTTTTCTTGCGACCCTAAAA-CATCAATGTC
427 AAT-AGGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATC
* * * * * ** * * *
1164431 ATGTATCCTAATGAAGG-GAATAG-GTTTTTGGTTCCCAATTTTGAAAA-GAATGGAGA-CTGTT
1 ATTTATCCTAAT-AAGGAGAAT-GTGTTTATAGTGCCTAATCAT-AAAATGAAAGAAGATC-ATT
* * * * * * * * *
1164492 ACGAGAATCGATGCTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAAGGAAATAGGGCAAAGA
62 ACTAGAATCCATGTTTGTCTCT-TTTGAGGCACGAACTTAGA-CTT--------TA---C----T
* * * ** * *
1164556 AAAGATTTCCCTGCAACACCAAAGCCTTTCTTGTGAAATAAAGTACCAATATCATGTATCCTAGT
110 AAA-A-TT--ATGGAA-A-AAAAGCCTTTCTTGCAAAATAAAGCACCAATATCATGTATCCTAAT
* * * * * **
1164621 GAGAAAACTATATTTATGGTGCCTAGTCCTAAAAAGAATGGGGATTAGTACGAGTAAACATGTTT
169 GAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTT
* * * * * * * ** * *
1164686 GCCATATTTTAGAGACACACTTTAATTCTATGAAAAATGAGGGAAA-AAAAGCTTTTCTTGCGGC
234 GTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGAC
* * * * *
1164750 ACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGGGTTTTTGGTTTCCAATCCTAAAAAG
299 ACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAG
* * * * *
1164815 AATGGAG-GTAGTTATGAGAATCGATGTTTGTGTTATTTAAGGGATGAACTTTTATTTTTAGAAA
363 AATGGAGACT-GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAA
* *
1164879 AATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
427 AATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * *
1164926 ATTTATGCTAATAAGGAGAATGTGTTTATAGTGCTTAACCATAAAATGAAAGAAGATCATTATTC
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * * * *
1164991 GAATCCGTTTTTATCTCTCTTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAAAAAGCC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGGAAAAAAAGCC
* * * * *
1165056 TTTCTTGCAAAATCAAAAG-ACCAGTATCGTGTATCCTAACGAGAGGGCTATGTTTATAGTGCCT
130 TTTCTTGCAAAAT--AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * *
1165120 CATCCTGAAAAGAATGGGGATTAGTACGTGTAGTCATTTTTGTCTTATTTAAGAGAAAAACTTTG
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* * * * * *
1165185 ATTTTATGAAAAGCAATGGAAGGAAAAGCTTTTCTTGGGACACTAAAGGATCAATGTCATGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* * ** ***
1165250 CTAATAAAGGGGATGCATTTTCATTTCCCAACCTTGAAAAGAATGGAGACTGTTATGAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGA
* *
1165315 TGCTTGT-TTGAATTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
387 TGCTTGTCTT-ATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA
*
1165379 CGCAAAAGAAAATCATCAATATC
451 TGCAAAAGAAAATCATCAATATC
* * * *
1165402 ATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTACTCATAAAATG--A-AAGATCTTTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * *
1165464 GAATCCATGCTTATCTCTTGTGAGGCACGAACTTGGAC--TAGTAAAATTAGTAGG-AGAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAGC
* * * * * * *
1165526 CTTTCTTGTGAAACTAAAGTACCAATATCATGTATCCTAATGAGAAAACTATATTTATGGTACCT
129 CTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
** * * * * * *
1165591 TGTCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCATATTTTAGAGACAAACTTTA
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
** * * * * * **
1165656 ATTCTAAGAAAAACGAGGGAAA-AAAAGCTTTTCTTGCGACACTGAAGCATCACTTTTGTGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* ** *
1165720 CTAATAAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACAATTACGAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * * *
1165785 TGTTTGTGTTATTTCAGGGATGAACTTCT-ATTTTAAGAAAAATAGGACGAAGAAAAGATTTCCA
387 TGCTTGTCTTATTTAAGGGATGAACTT-TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA
*
1165849 TGCAATAGAAAATCATCAATATC
451 TGCAAAAGAAAATCATCAATATC
* * * * * * **
1165872 ATTTATGCTAATGATGAGAATATGCTTATTGTGCCTAATCATAAAAAAAAAGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * * *
1165937 GAATCCATGTTTGTCTCTTTTGAGGTACAAACATAGATTTTACTAAAATTGGTGGGAAAAATGCC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGGAAAAAAAGCC
* * * * * * *
1166002 TTTCTTGCAAAATCAAAGCACTATTATCGTATGTCCTAATGAGAAGACTATGTTTATAGTACCTC
130 TTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
* * * *
1166067 ATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAGGAAATAATCTTTGA
194 ATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * * *
1166132 TTCTATCAAAAA-AGATGGAAAGAAAAGCTTTTCTTACGACACTAAAGCGTCAATATCATGTCTC
259 TTCTATCAAAAACA-ATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* * **
1166196 CTAATGAAGGGAACGTGTTTTTGGTTCCCAACCATGAAAAGAATGGAGACTGGTAAAAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * *
1166261 CGCTTGTCTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCAA
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAT
*
1166326 CCAAAA-AAAATCATCAATATC
452 GCAAAAGAAAATCATCAATATC
* * * *
1166347 ATTTATACTAATGAGGAGAATGTGTTTATAGTGCC-AACTCATAAAAT----GAAGATCTTTATT
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAA-TCATAAAATGAAAGAAGATCATTACT
* * * **
1166407 AGAATCCATGTTTATCTCTTGTGAGGCACGAACTTGGACTTTTGTAAAATTAGTAGG-AAAAAAG
65 AGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAG
* ** *
1166471 CCTTTCTTGTGAAGCTAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC
128 CCTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCC
* * *
1166536 TAATCCT-AAAATGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTTAGAGACAAACTT
192 TAATCCTGAAAA-GAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * * * * * * *
1166600 TAATTCTATGAAAAACGAGGGTAA-AAAAGCTTTTCTTGTGACACTAAAGCATCACTGTCGTGTA
256 TGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
* * * * *
1166664 TCCTAATAAAGGGAATGTGTATCTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATC
321 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * *
1166729 GATGTTTGTGTTATTTAAGGGATGAACTTTTATTTTAAGAAAAATAGGACAAAGAAAATATTTCC
385 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTC
* *
1166794 ATGCGAAAGAAAATGATCAATATC
450 ATGCAAAAGAAAATCATCAATATC
* * * * * *
1166818 ATTTATGCTAATGAGGAAAATGTGTTTATAGTGCTTAATCATAAAATGAAATAAGATCATTACCA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * *
1166883 GATTCCATATTTGTCTCTTTTGAGGCACGAACATT-GACTTCACTAAAATTACAGGGAAAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAAC-TTAGACTTTACTAAAATTA-TGGAAAAAAAGC
** * *
1166947 CTTTCTTGCAAAATCAAAGCACCGGTATCGTGTATCCTAATGAGAAGACTACGTTTATAGTGCCT
129 CTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * * *
1167012 CACCCTGAAGAGAATGGGGATTAGTATGAGTATTCATGTTTCTCTTATTTAAGAGATAATCTTTG
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
** * * * *
1167077 ATTCTATCAAAAATGATGAAAAGAAAAGCTTTTCTTACGACCCTAAAACATCAATGTCATGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* * * ** * *
1167142 CTGATGAAAGGAATGTGTTTTTGGTTCCTAATTTTGAAACGAATGGAGACTGTTACGAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * *
1167207 TGCTTGTCTTATTTAAGGGATAAACTTTGGTTTTAAGAAAAATATGGCAAAGAAAAGATTTCCGT
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAT
* *
1167272 GCAAAGGAAAATCATTAATATC
452 GCAAAAGAAAATCATCAATATC
*
1167294 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCTTAATCATAAAATGAAAGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * *
1167359 GAATCCATGTTTGTCTCTTTGGAGGCATGACCATAGACTTTACTAAAAATTGTGGGAAAAAAGCC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACT-AAAATTATGGAAAAAAAGCC
* * * *
1167424 TTTCTTGCAAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAGGACTATGTTTATAGTGCCTC
130 TTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
* * * * * * ** *
1167489 ATCTTGAAAGGAATGGGGATTAATACGTGTATTCATTTTTATCAAATTTAAGAGACAAACTTTGA
194 ATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * * * *
1167554 TTTTATCAAAAGCAATGGAAGGAAAAGCTTTTCTTGAGACACTAAAGCATCAATGTCATATATCC
259 TTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCC
* ** ***
1167619 TAATAAAGGGAATGCATTTTCATTTCCCAACCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
324 TAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGAT
* * * *
1167684 GCTTATCTTATTTAGGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACG
388 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATG
*
1167749 GAAAAGAAAATCATCAATATC
453 CAAAAGAAAATCATCAATATC
** * * *
1167770 ATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTACTCATGAAATG--A-AAGATCTTTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * * *
1167832 GAATCCATGCTTATCGCTTGTGAGGCACGAACTTGGAC--TAGTAAAATTAGTAGG-AGAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAGC
* * * * * * *
1167894 CTTTCTTGTGAAACTACAGCACCAATATCATGTATCCTAATGGGAAAACTATATTTATGGTGCCT
129 CTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * * * * *
1167959 AGTCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCATATTTTAGAGACAAACTTTA
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* * *
1168024 ATTCTAT-GAAAACGA-GTGAAA-AAAAGCTTTTCTTGCGACA-TCAAAGCATCAATGTCGTGTA
258 ATTCTATCAAAAACAATG-GAAAGAAAAGCTTTTCTTGCGACACT-AAAGCATCAATGTCATGTA
* * * *
1168085 TCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACAGTTACGAGAATC
321 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * ** *
1168150 GATGTTTATGTTATTTAAGGGTTGAACTTTTATTTTTAA-AAAAATAGGATAAAGAAAAGATTTC
385 GATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGAAAAATAGGGCAAAGAAAAGATTTT
1168214 CATGCAAAAGAAAATCATCAATATC
449 CATGCAAAAGAAAATCATCAATATC
* * * * * * * *
1168239 ATTTATGCTAATGATGAGAATATGCTCATTGTGCCTAATCATAAAAAGAAAGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * *
1168304 GAATCCATGTTGGTCTCTTTTGAGGCACAAACATAGATTTTACTAAAATTGGTAGG-AAAAAGGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-AT-GGAAAAAAAGC
* * * *
1168368 CTTTCTTGCAAAATCAAAGCACTATTATCGTATATCCTAATGAGAAGACTATGTTTATAGTGCCT
129 CTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * *
1168433 CATCCTAAAAAGAATAGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAAATAATCTTTG
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* * * * *
1168498 ATTCTATCAAAAA-AGATGGAAAGAAAAGCTTTCCTTGTGACCCTAAAACATCAATGTCTTGTAT
258 ATTCTATCAAAAACA-ATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTAT
* * ** * * *
1168562 CCTAATGCAGGGAATAG-GTTTTTGGTTCACAATTTTGAAAAGAATGGAGATTGTTACGAGAATT
322 CCTAATGAAGGGAAT-GTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATC
*
1168626 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
385 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTC
*
1168691 GTGCAAAAGAAAATCATCAATATC
450 ATGCAAAAGAAAATCATCAATATC
* * * *
1168715 ATTTATCCTAAGAAGAAGAATGTGTTTATAGTGCTTAATCATAAAATGAATGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * ** *
1168780 AAATCCATGTTTATCTCTTTTGAGGCATGAAC-TAGACATTACTAAAACTGGTGGGAAAAAAGCC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAA-TTATGGAAAAAAAGCC
* * * *
1168844 TTTCTTGCAAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAGGACTATGTTTATAGTGCCTT
130 TTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
* * * * * *
1168909 ATCCTGAAAAAAATGGGGATTAGTGCGTGTATTCATTTTTGTCTTATTTAAGAGACAAATTTTGA
194 ATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * * * *
1168974 TTTTATCAAAAGCAATGGAAGGAAATGCTTTTCTTGAGACACTAAAGCATCAATGTCA-GTATCC
259 TTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCC
* * *** *
1169038 TAATAAAGCGAATGCT-TTTTCATTTCCCAACCTTGAAAAAAATGGAGACTGTTATGAGAATCGA
324 TAATGAAGGGAATG-TGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGA
* * *
1169102 TGTTTGTTTTATTTAAGGGATGAACTTTGATTTTAA-AGAAAATAGGGCAAAGAAAAGATTTTGA
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGA-AAAATAGGGCAAAGAAAAGATTTTCA
* * *
1169166 CGCAAAAGAAAATCATCAACATT
451 TGCAAAAGAAAATCATCAATATC
* * * * * * *
1169189 ATTCATCCTAGTGAGGAGAATGTGTTTATAGTGCCTACTCAAAAAATG--A-AAGATCTTTATTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * *
1169251 GAATCCATGCTTATCTCTTGTGAGGCACGAACTTGGAC--TAGTAAAATTAGTAGG-AGAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAGC
* * * * * *
1169313 CTTTCTTGTGAAACTAAAGCACCAATATCATGTATCCTAAAGAGAAAACTATATTTATGGTGCCT
129 CTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * * * * * * *
1169378 AGTCCTAAAAAGAATAGGGATTAGTATGAGCATTCATGTTTGCCATATTTTAGAGACAAACTTTA
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* * * * * *
1169443 ATTCTATGAAAAACGAGGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCACTGTCGTGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* * ** *
1169507 CTAATAAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAATAATGGAGA-TAGTTACCAAAATCG
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACT-GTTATGAGAATCG
* * * * * *
1169571 ATGTTTGTGTTATTTAAGGGTTGAACTTTTATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCA
386 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA
1169636 TGCAAAAGAAAATCATCAATA-C
451 TGCAAAAGAAAATCATCAATATC
* * * * * * * *
1169658 TATTTATGCTAATTATGAGAATATGCTTGTTGTGCCTAATCATGAAAA-GAAAGAACATCATTAC
1 -ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAT-AAAATGAAAGAAGATCATTAC
* * * *
1169722 TAGAATCCATGTTTGTCTCTTTTGAAGCACGAACATAGATTTTACTAAAATTGGTAGG-AAAAAA
64 TAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-AT-GGAAAAAAA
**
1169786 GCCTTTC-T-----AT----------TAT-A--TATCCTTGTGAGAAGACTATGTTTATAGTGCC
127 GCCTTTCTTGCAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCC
* * * * * *
1169832 TCATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAGGAAATAATCATT
192 TAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTT
1169897 GATTCTATCAAAAA-AGATGGAAAGAAAAGCTTTTCTTGCGACACT-----A--AA-G---TG--
257 GATTCTATCAAAAACA-ATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
* * **
1169948 T-C-AATGAAGGGAACGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACAGTTAAAAGAATC
321 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATC
* *
1170011 TATGCTTGTCCTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
385 GATGCTTGT-CTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTT
** * *
1170075 CACACCAAAA-AAAAACACCAATATC
449 CA-TGCAAAAGAAAATCATCAATATC
* * ** * * * *
1170100 ATTTATACAAAGGAGGAGAATGTCTTTATAGTGCCGACTCATAAAATG--A-AAGATCTTTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * *
1170162 GAATCCATGTTTATCTCTTGTGAGGCACGAACTTGGACTTTAGTAAAATTAAACGG-AAAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT--ATGGAAAAAAAGC
* * * * *
1170226 CTTTCTTGTGAAACTAAAGCACCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGGTGCCT
129 CTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * * *
1170291 AATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTTAGATACAAACTTTA
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* ** * * * * * * *
1170356 ATTCTATGAAAAATGAGGGTAA-AAAATCATTTCTTGTGACACCAAAGCATCAATGTCGTGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
** * * * **
1170420 CTAAAAAAGGGAATGTATTTCTT-GTTCCCAATCTTGAAAAGAATGGAGACTCTTACAAGAATCG
323 CTAATGAAGGGAATGTGTTT-TTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATCG
* * * * *
1170484 ATGTTTGTGTTATTTAAGGGATGAACTTTCATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCA
386 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA
1170549 TGCAAAAGAAAATCATCAATATC
451 TGCAAAAGAAAATCATCAATATC
* * *
1170572 ATTTATGCTAATGAGGAGAATGTGTTTATAGTGCTTAATCATAAAAT-------GA--ATTA--A
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * *
1170626 G-ATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTTACTGAAATTGGTGGGAAAAAAA-C
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-AT-GGAAAAAAAGC
* * *
1170689 CTTTCTTGCAAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAGGACTATGTTTGA-AGTGCC
129 CTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTT-ATAGTGCC
* * * * *
1170753 TCATCTTGAAAAGAATGGGGATTAGTACGTGTATTCATTTTTGTCTTATTTAAGAGACAAACTTT
192 TAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTT
* * * * * * *
1170818 GATTTTATCAAAAGCAATGGAAGGAAAAGCTTTTCTTGAGACACTAAAGTATCAATGACCTGTAT
257 GATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTAT
* * ** *** * * * *
1170883 CCTAGTAAAGGGAATGCATTTTCATTTCCCAACCTTGAAAAGAGTGGAGACTATTGTGAGAGTCG
322 CCTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCG
* *
1170948 ATGCTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
386 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA
*
1171013 CGCAAAAGAAAATCATCAATATC
451 TGCAAAAGAAAATCATCAATATC
* * * *
1171036 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTACTCATAAAATG--A-AAGATCTTTTCTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * * *
1171098 GAATCCATGCTTATCTCTTGTAAGGCACGAACTTGGAC--TAGTAAAATTAGTAGG-AGAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAGC
* * * *
1171160 CTTTCTTGTGAAACTAAAGCACCAATATCATGTATCCTAATGAGCAA-ACTATATTTATGGTGCC
129 CTTTCTTG-CAAAATAAAGCACCAATATCATGTATCCTAATGAG-AAGACTATGTTTATAGTGCC
* * * * * *
1171224 TAGTCCT-AGAAAGAATGGGGATTAATACGAGTATTCATGTTTGCCATATTTTAGAGACAAACTT
192 TAATCCTGA-AAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * * * * * * *
1171288 TAATTCTATGAAAAACGAGGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCACTATCGTGTA
256 TGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
* *
1171352 TCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACAGTTATGAGAATC
321 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * * *
1171417 GATGTTTGTGTTATTTAAGGGTTGAAATTCT-ATTTTAAGAAAAATATGACAAAGAAAAGATTTC
385 GATGCTTGTCTTATTTAAGGGATGAACTT-TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTT
* *
1171481 CATGTAAAAGAAAATCAGCAATATC
449 CATGCAAAAGAAAATCATCAATATC
* * ** * * * **
1171506 ATTTATGCTAATGATAAGAATATGCTTATTGTGCCTAATCATAAAAAAAAAGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * *
1171571 GAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGATTTTACTAAAATTGGTGCG-AAAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATG-GAAAAAAAGC
* ** * * * *
1171635 CTTTCTTGAAAAATCAAAGCATTATTATCGTATATCCTAATGTGAAGACTATGTTTATAGTGCCT
129 CTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * * * *
1171700 CATCCTAAAAAGAATAGGGATTAGTACAAGTATTCATGTTTGTCTTATTTAAGAAATAATCTTTG
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* *** * * ** * *
1171765 ATTCTAGCAAAATGGATGGAAAGAAAA-CTTTTGTTGCGACACTAGAGTGTCAATATCATGTCTC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* **
1171829 CTAATGAAGGGAACGTGTTTTTGGTTCCCAACCTTGAAAAGAATGGAGACTGTTAAAAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * *
1171894 TGCTTGTCTTATCTAAGGGATGAACTTTGAATTTAAGGAAAATAAGGCAAAGAAAAGATTTTCAC
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAT
* *
1171959 ACAAAAAAAAATCATCAATATC
452 GCAAAAGAAAATCATCAATATC
*
1171981 ATTTATCCTAAGT-AGGAGAATGTGTTTATAGTGCC-AACTCATAAAATG--A-AAGATCTTTAC
1 ATTTATCCTAA-TAAGGAGAATGTGTTTATAGTGCCTAA-TCATAAAATGAAAGAAGATCATTAC
* * * * * *
1172041 TGGAATCCATATTTATCTCTTGTGAGGCACGAACTTGGACTTTAGTAAAATTAGTAGG--AAAAA
64 TAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAA
* *
1172104 GCCTTTCTTATG-AAACTAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTG
127 GCCTTTC-T-TGCAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTG
* * * *
1172168 CCTAACCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTAAGAGAAAGGAA
190 CCTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAG--A-TAA
**** *** * * * * * * * *
1172233 AAAACGCATTTCT-T--GTGAC-AT-CAAAGCATCAATGTCATGT-ATCCTA-A-TAAAGGGA--
252 ACTTTG-A-TTCTATCAAAAACAATGGAAAG-A--AAAG-CTTTTCTTGCGACACTAAA-GCATC
* ** * ** **** ** ** *
1172288 ATGTGTTTTTGCT-TCCCAATCTTGAAAAGAATG-GAGACT-GTT----ACGAGAATCG-ATGTT
310 A-ATG-TCATG-TATCCTAA---TGAAGGGAATGTGTTTTTGGTTCCCAACCTGAAAAGAATG-G
* ** ** **** * * * * * * *
1172345 TG--TGTTAT-TTAAGGGATGAACCT-TTATTTTAA--GA-AAAATATGA---CAAAAAAAAGAT
368 AGACTGTTATGAGAATCGATGCTTGTCTTA-TTTAAGGGATGAACTTTGATTTTAAGAAAAATAG
** * * * * * *
1172400 TTCCATGTAAAAGAATATCAT-C-----AATATCAT--TTATGC
432 GGCAAAG-AAAAGATTTTCATGCAAAAGAAAATCATCAATAT-C
* * *** * *** * ** *
1172436 TAATGATGAGAATATGCTTATTGTGCCTA-A-T--C--AT-A-AAAA-GAAAGAAGATCATTACC
1 -ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACT
* * * * * * * *
1172492 GGATTCCATGTTTGTCTCTTTTAAGGCATGAACATAGACTTTACTGAAATTGGTGGGAAAAAAGC
65 AGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGGAAAAAAAGC
* *
1172557 CTTTCTTGCAAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
129 CTTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCT
* * * *
1172622 CATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAATCTTTG
193 AATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
** * *
1172687 ATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACCCTAAAACATCAATGTCATGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
** *
1172752 CTAATGAAGGGAATAG-GTTTTTGGTTCCCAATTTTGAAAAGAATGGAGACTGTTACGAGAATCG
323 CTAATGAAGGGAAT-GTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATCG
* * *
1172816 ATGCTTGTCTTATATAAGGGATGAACTTTGATTTTAA-AGGAAATAGGGCAAAGAAAAGATTTCC
386 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGA-AAAATAGGGCAAAGAAAAGATTTTC
*
1172880 CTGCAAAAGAAAATCATCAATATC
450 ATGCAAAAGAAAATCATCAATATC
* * *
1172904 ATTTATCCTGATAAGGAGAATGTGTCTATAGTGCTTAATCATAAAATGAAAGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
** * * *
1172969 GAATCCATGTTTGTCTCTTTTGAGGCATAAACATAGACTTTACTAAAATTGGTGGGAAAAAAGCC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGGAAAAAAAGCC
* * * * * *
1173034 TTTCTTGGAAAATCAAAGCACCAGTATCGTGTATCCAAATGAGAGGACTATGTTTATAGTGCCTC
130 TTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
*** * * * * * * *
1173099 ATCCTTTTCATG-ATGAGGATTAGTACGTGTATTCATTTTTATCGTATTTAAGAGTTAAACTTTG
194 ATCC-TGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTG
* * * * * * *
1173163 ATTTTATCAAAAGCAATGGAAGGAATAGCTTTTCTAGAGACACTAAAGCATCAATGTCACGTATC
258 ATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* ** *** * *
1173228 CTAATAAAGGGAATGCATTTTCATTTCCCAACCTTGAAAAGAATGGAGACTGTTATAAGAATTGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAACC-TGAAAAGAATGGAGACTGTTATGAGAATCGA
* *
1173293 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGT
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAT
1173358 GCAAAAGAAAATCATCAATATC
452 GCAAAAGAAAATCATCAATATC
* * * * *
1173380 AGTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTACTCATCAAATG--A-AAGATCTTTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
** * * * * *
1173442 GAATCCATGCCTATCTCTTATGAGGCACGAACTTGGAC--TAGTAAAATTAGTAGG-AGAAAAGC
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAGC
* * * * * *
1173504 CTTTATTGTGAAACTAAAGCACCAATATCATGTATGCC-AATGAGAAAACTATATTTATGGTGCC
129 CTTTCTTG-CAAAATAAAGCACCAATATCATGTAT-CCTAATGAGAAGACTATGTTTATAGTGCC
* * * * * * *
1173568 TAGTCCT-AAAGAAAATGAGGATTAGTACGAGTATTCATATTTGTCATATTTTAGAGACAAACTT
192 TAATCCTGAAA-AGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * ** * * * * **
1173632 TAATTCTATGAAAAATGA-GGGAA-AAAAGCTTTTCTTGCGACACCAAAGCGTCAACGTTGTGTA
256 TGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
* * *
1173695 TCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACAGTTACGAGAATC
321 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * *** *
1173760 GATGTTTGTGTTATTTATGGGATGAACTTTTATTTGAAGAAAAATATAACAAAGAAAAGATTTCC
385 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTC
* *
1173825 ATGTAAAAGAATATCATCAATATC
450 ATGCAAAAGAAAATCATCAATATC
* * * * * * * * *
1173849 ATTTATGCTAATGATGAGAATATGCTTATTGTGCCTAATGATAAAAAGAACGAAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * * * * *
1173914 GAATCCATATTTGTTTCTTTTGAGGCACAAACGTAGATTTTACTAAAATTGGTGGGAAAAAAGCT
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATT-ATGGAAAAAAAGCC
* * * * * *
1173979 TTTCTTGCAAAATCAAAGCACTATTATCGTATATCCTAATTAGAAGACTATGTTTATAGTGCCTT
130 TTTCTTGCAAAAT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTA
* * * * * *
1174044 ATCCTAAAAAGAATAGGGATTAGTACGAGTATTCACGTTTATCTTATTTAAGAAATAATCTTTGA
194 ATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * *
1174109 TTCTATCAAAAA-AGATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCGTCAATATCATGTTTC
259 TTCTATCAAAAACA-ATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATC
* * * * **
1174173 CTAATGAAGGGAACGTGGTTTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTAAAAGAATCGA
323 CTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CCTGAAAAGAATGGAGACTGTTATGAGAATCGA
*
1174238 TGCTTGTCTTATTTAAGGGACGAACTTTGATTTTAA-AGAAAATAGGGCAAAGAAAAGATTTTCA
387 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGA-AAAATAGGGCAAAGAAAAGATTTTCA
***
1174302 CATAAAAGAAAATCATCAATATC
451 TGCAAAAGAAAATCATCAATATC
* * * *
1174325 ATTTATCCTAATGAGGAGATTGTGTTTATAGTACCTACTCATAAAATG--A-AAGATCATTACTA
1 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
* * * * *
1174387 GAATCCATGTTTATCTCTTGTGAGACACGAACTTGGACTTTAGTAAAATTAGTAGGAAAAAAA-C
66 GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTA-T-GGAAAAAAAGC
*
1174451 CTTTCTTATG-AAACTAAAGCACCAATATCATGTAT
129 CTTTC-T-TGCAAAATAAAGCACCAATATCATGTAT
1174486 TGTTAGCATC
Statistics
Matches: 13538, Mismatches: 2592, Indels: 1244
0.78 0.15 0.07
Matches are distributed among these distances:
438 69 0.01
439 2 0.00
440 6 0.00
441 147 0.01
442 9 0.00
443 1 0.00
445 3 0.00
446 12 0.00
447 9 0.00
448 18 0.00
449 18 0.00
450 67 0.00
451 115 0.01
452 2 0.00
453 5 0.00
454 7 0.00
455 107 0.01
456 52 0.00
457 21 0.00
458 107 0.01
459 6 0.00
461 21 0.00
462 25 0.00
463 168 0.01
464 224 0.02
465 3 0.00
466 6 0.00
467 34 0.00
468 17 0.00
469 444 0.03
470 935 0.07
471 990 0.07
472 563 0.04
473 878 0.06
474 1007 0.07
475 2578 0.19
476 2895 0.21
477 525 0.04
478 135 0.01
479 249 0.02
480 4 0.00
482 4 0.00
483 4 0.00
484 5 0.00
485 1 0.00
486 3 0.00
488 3 0.00
489 13 0.00
490 131 0.01
491 135 0.01
492 10 0.00
493 40 0.00
494 47 0.00
495 252 0.02
496 78 0.01
497 4 0.00
498 2 0.00
499 2 0.00
500 3 0.00
501 8 0.00
502 103 0.01
503 101 0.01
504 95 0.01
505 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTA
GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACTAAAATTATGGAAAAAAAGCCT
TTCTTGCAAAATAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAAT
CCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATT
CTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTA
ATGAAGGGAATGTGTTTTTGGTTCCCAACCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
TGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCAA
AAGAAAATCATCAATATC
Found at i:1162540 original size:186 final size:188
Alignment explanation
Indices: 1162199--1162573 Score: 526
Period size: 186 Copynumber: 2.0 Consensus size: 188
1162189 ATGTTTATAG
* * * *
1162199 TGCCTCATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCATATTTAAGAGATAAT
1 TGCCTAATCCCAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCATATTTAAGAGACAAA
* *
1162264 CTTGGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATATCTT
66 CTTGAATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCTT
* * *
1162329 GTCTCCTAATGAAGGGAACGTGTTTTTGGTTCCCAACCTTAAAAAGAATGGAGATTGT
131 GTATCCTAATAAAGGGAACGTGTTTTTGGTTCCCAACCTTAAAAAGAATGGAGACTGT
* *
1162387 TGCCTAATCCCAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTG-CATTCTTTTAGAGACAA
1 TGCCTAATCCCAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCA-TATTTAAGAGACAA
* * * *
1162451 ACTTTAATTCTA-CGAAAAACGA-GGGAA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGT-
65 ACTTGAATTCTATC-AAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATC
* * *
1162512 TGTGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
129 T-TGTATCCTAATAAAGGGAACGTGTTTTTGGTTCCCAACCTTAAAAAGAATGGAGACTGT
1162573 T
1 T
1162574 ACGTGAATCG
Statistics
Matches: 166, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
185 1 0.01
186 85 0.51
187 7 0.04
188 73 0.44
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (188 bp):
TGCCTAATCCCAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCATATTTAAGAGACAAA
CTTGAATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCTT
GTATCCTAATAAAGGGAACGTGTTTTTGGTTCCCAACCTTAAAAAGAATGGAGACTGT
Found at i:1163610 original size:20 final size:20
Alignment explanation
Indices: 1163585--1163632 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
1163575 AAAATAGGGC
*
1163585 AAAGAAAACATTTTCGTGCA
1 AAAGAAAACATTTTCGCGCA
*
1163605 AAAGAAAAGATTTTCGCGCA
1 AAAGAAAACATTTTCGCGCA
1163625 AAAGAAAA
1 AAAGAAAA
1163633 TCGTCAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (20 bp):
AAAGAAAACATTTTCGCGCA
Found at i:1166650 original size:158 final size:155
Alignment explanation
Indices: 1164576--1169511 Score: 672
Period size: 159 Copynumber: 31.3 Consensus size: 155
1164566 CTGCAACACC
* * * * * * *
1164576 AAAGCCTTTCTTGTGAAA-TAAAGTACCAATATCATGTATCCTAGTGAGAAAACTATATTTATGG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * ** * * *
1164640 TGCCTAGTCCTAAAAAGAATGGGGATTAGTACGAGTAAACATGTTTGCCATATTTTAGAGACACA
66 TGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAAA
1164705 CTTTAATTCTATGAAAAATGAGGGAAAA
130 CTTTAATTCTATGAAAAA-GAGGG-AAA
** * * * ** *
1164733 AAAGCTTTTCTTGCGGCACCAAAGCATCAATGTCATGTATCCTAAT-A-AAGGGAATGGGTTTTT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATGTTTAT
* * * * * * *
1164796 GGTTTCC-AATCCTAAAAAGAATGGAG-GTAGTTATGAGAATCGATGTTTGTGTTATTTAAGGGA
64 GG-TGCCTAATCCTAAAAAGAATGGAGATTAG-TACGAGATTC-ATGTTTGTCTTATTTTAGAGA
** * * * *
1164859 TGAACTTTTATT-TTTAGAAAAATAGGACAAAGA
126 CAAACTTTAATTCTAT-GAAAAAGAGG--GAA-A
* * * * ** * * * * * * * *
1164892 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATGCTAATAAGGAGAATGTGTTTATAG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * * * * * * * * *
1164957 TGCTTAA-CCATAAAATGAAAGAAGATCATTATTCGA-ATCCGTTTTTATC-TCTCTT-GAGGCA
66 TGCCTAATCC-TAAAAAGAATGGAGATTAGTA--CGAGATTCATGTTTGTCTTATTTTAGAGACA
* * *
1165018 TGAAC-ATAGACTT-TACT-AAAATTGGTGGGAAA
128 --AACTTTA-A-TTCTA-TGAAAA--AGAGGGAAA
* * * * * * * * * *
1165050 AAAGCCTTTCTTGCAAAATCAAAAG-ACCAGTATCGTGTATCCTAACGAGAGGGCTATGTTTATA
1 AAAGCTTTTCTTGCGAAA-CTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * *
1165114 GTGCCTCATCCTGAAAAGAATGGGGATTAGTACGTGTAGTCATTTTTGTCTTATTTAAGAGAAAA
65 GTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAA
* * *
1165179 ACTTTGATTTTATG-AAAAGCAATGGAAGGA
129 ACTTTAATTCTATGAAAAAG--AGGGAA--A
* * * * ***
1165209 AAAGCTTTTCTTGGGACACTAAAGGATCAATGTCATGTATCCTAAT-A-AAGGGGATGCATTTTC
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG---TTT-
* * * * * * * * *
1165272 AT--TTCCCAA-CCTTGAAAAGAATGGAGACT-GTTATGAGAATCGATGCTTGT-TTGAATTAAG
62 ATGGTGCCTAATCC-TAAAAAGAATGGAGATTAG-TACGAGATTC-ATGTTTGTCTT-ATTTTAG
* ** * * * * *
1165332 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
123 AGACAAACTTTAATTCTATGAAAAAGAGGG--AA-A
* ** * ** * * * * * * *
1165368 AAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * * * * * *
1165433 TGCCTACTCATAAAATGAA---AGATCT-TTACTAGAATCCATGCTTATC-TCTTGT-GAGGCAC
66 TGCCTAATCCTAAAAAGAATGGAGAT-TAGTACGAG-ATTCATGTTTGTCTTATTTTAGA-G-AC
* ** *
1165492 GAACTTGGA--CTA-GTAAAATTAGTA-GGAGA
127 AAACTTTAATTCTATG-AAAA--AG-AGGGAAA
* * * * * *
1165521 AAAGCCTTTCTTGTGAAACTAAAGTACCAATATCATGTATCCTAATGAGAAAACTATATTTATGG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* ** * * *
1165586 TACCTTGTCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCATATTTTAGAGACAAA
66 TGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAAA
*
1165651 CTTTAATTCTAAGAAAAACGAGGGAAAA
130 CTTTAATTCTATGAAAAA-GAGGG-AAA
* * * * ** * * *
1165679 AAAGCTTTTCTTGCGACACTGAAGCATCACTTTTGTGTATCCTAAT-A-AAGGGAATGTGTTTTT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATGTTTAT
* * * ** * * * * * **
1165742 GGTTCCCAATCCTGAAAAGAATGGAGACAATTACGAGAATCGATGTTTGTGTTATTTCAGGGATG
64 GGTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAGATTC-ATGTTTGTCTTATTTTAGAGACA
* * *
1165807 AACTTCT-ATTTTAAGAAAAATAGGACGAAGA
128 AACTT-TAATTCTATGAAAAAGAGG--GAA-A
* * * ** * * * * *
1165838 AAAGATTTCCATGC-AATAGAAAATCATCAATATCATTTATGCTAATGATG-AGAATATGCTTAT
1 AAAGCTTTTCTTGCGAA-ACTAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTAT
* * * * * * * * * *
1165901 TGTGCCTAATCATAAAAAAAAAGAAGATCATTACTAGAATCCATGTTTGTC-TCTTTT-GAGGTA
64 GGTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGA-G-A
* * * *
1165964 CAAAC-ATAGATTTTACT-AAAATTGGTGGGAAA
126 CAAACTTTA-ATTCTA-TGAAAA--AGAGGGAAA
* * * * * * *
1165996 AATGCCTTTCTTGC-AAAATCAAAGCA-CTATTATCGTATGTCCTAATGAGAAGACTATGTTTAT
1 AAAGCTTTTCTTGCGAAACT-AAAGCATC-AATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * *
1166059 AGTACCTCATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTA-TTTAG-GAAA
64 GGTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACA
* * *
1166122 TAATCTTTGATTCTATCAAAAAAGATGGAAAGA
128 -AA-CTTTAATTCTAT-GAAAAAGA-GGGAA-A
* * * * * * *
1166155 AAAGCTTTTCTTACGACACTAAAGCGTCAATATCATGTCTCCTAATGA-AGGGAAC-GTGTTTTT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTATGTTTAT
* * * * * ** * * * * * *
1166218 GGTTCCCAA-CCATGAAAAGAATGGAGACTGGTAAAAGAATCGACGCTTGTCTTATTTGAGGGAT
64 GGTGCCTAATCC-TAAAAAGAATGGAGATTAGTACGAGATTC-ATGTTTGTCTTATTTTAGAGAC
* * * * * *
1166282 GAACTTTGATTTTAAGGAAAATAGGGTAAAGA
127 AAACTTTAATTCTATGAAAAAGAGGG--AA-A
* ** * ** * * * * * * *
1166314 AAAGATTTTC-AACCAAAAAAAATCATCAATATCATTTATACTAATGAGGAGAATGTGTTTATAG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * ** * * * * *
1166378 TGCC-AACTCATAAAATGAA--GATCTTTATTA-GA-ATCCATGTTTATC-TCTTGT-GAGGCAC
66 TGCCTAA-TCCTAAAAAGAATGGA-GATTAGTACGAGATTCATGTTTGTCTTATTTTAGA-G-AC
* * *
1166436 GAACTTGGACTT-T-TGTAAAATTAGTA-GGAAA
127 AAACTT-TAATTCTATG-AAAA--AG-AGGGAAA
* * * *
1166467 AAAGCCTTTCTTGTGAAGCTAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * *
1166532 TGCCTAATCCTAAAATGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTTAGAGACAAA
66 TGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAAA
1166597 CTTTAATTCTATGAAAAACGAGGGTAAA
130 CTTTAATTCTATGAAAAA-GAGGG-AAA
* * * * * * * * *
1166625 AAAGCTTTTCTTGTGACACTAAAGCATCACTGTCGTGTATCCTAAT-A-AAGGGAATGTGTATCT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATGTTTAT
* * * * * * * * * * * **
1166688 GGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGTTTGTGTTATTTAAGGGATG
64 GGTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAGATTC-ATGTTTGTCTTATTTTAGAGACA
* * * *
1166753 AACTTTTATTTTAAGAAAAATA-GGACAA
128 AACTTTAATTCTATGAAAAAGAGGGA-AA
** * ** * * * *
1166781 AGAAAATATTTCCATGCGAAAGAAAATG-ATCAATATCATTTATGCTAATGAGGAA-AATGTGTT
1 A-AAGCT-TTT-CTTGCGAAACTAAA-GCATCAATATCATGTATCCTAATGA-GAAGACTATGTT
* * * * * * * * * *
1166844 TATAGTGCTTAATCATAAAATGAAAT-AAGATCATTACCAGATTCCATATTTGTC-TCTTTT-GA
61 TATGGTGCCTAATCCTAAAAAG-AATGGAGATTAGTACGAGATT-CATGTTTGTCTTATTTTAGA
* * * *
1166906 GGCACGAACATTGACTTC-ACT-AAAATTACAGGGAAA
124 -G-ACAAAC-TTTAATTCTA-TGAAAA--AGAGGGAAA
* * * ** * * *
1166942 AAAGCCTTTCTTGC-AAAATCAAAGCACCGGTATCGTGTATCCTAATGAGAAGACTACGTTTATA
1 AAAGCTTTTCTTGCGAAACT-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * *
1167006 GTGCCTCACCCTGAAGAGAATGGGGATTAGTATGAGTATTCATGTTTCTCTTATTTAAGAGATAA
65 GTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAA
* * * **
1167071 TCTTTGATTCTATCAAAAATGATGAAAAGA
129 ACTTTAATTCTATGAAAAA-GA-GGGAA-A
* ** * * * * * *
1167101 AAAGCTTTTCTTACGACCCTAAAACATCAATGTCATGTATCCTGATGA-AAGGAATGTGTTTTTG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAA-GACTATGTTTATG
* ** * * * * * * * *
1167165 GTTCCTAATTTTGAAACGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATA
65 GTGCCTAATCCTAAAAAGAATGGAGATTAG-TACGAGATTC-ATGTTTGTCTTATTTTAGAGACA
** * * * *
1167229 AACTTTGGTTTTAAGAAAAATATGGCAAAGA
128 AACTTTAATTCTATGAAAAAGA-GG-GAA-A
* * * ** * * * * * * * *
1167260 AAAGATTTCCGTGC-AAAGGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTATA
1 AAAGCTTTTCTTGCGAAA-CTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * * * * *
1167324 GTGCTTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTC-T-CTTTGGAGGCAT
65 GTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACA-
* ** *
1167387 GACCATAGACTT-TACT-AAAAATTGTGGGAAA
128 AACTTTA-A-TTCTA-TGAAAAA--GAGGGAAA
* * * * * * *
1167418 AAAGCCTTTCTTGC-AAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAGGACTATGTTTATA
1 AAAGCTTTTCTTGCGAAACT-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * * ** *
1167482 GTGCCTCATCTTGAAAGGAATGGGGATTAATACGTGTATTCATTTTTATCAAATTTAAGAGACAA
65 GTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAA
* * * *
1167547 ACTTTGATTTTAT-CAAAAGCAATGGAAGGA
129 ACTTTAATTCTATGAAAAAG--AGGGAA--A
* * * * *
1167577 AAAGCTTTTCTTGAGACACTAAAGCATCAATGTCATATATCCTAAT-A-AAGGGAATGCAT-TTT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAA--GACT--ATGTTT
* * * * * * * *
1167639 CAT--TTCCCAA-CCTTGAAAAGAATGGAGACT-GTTATGAGAATCGATGCTTATCTTA-TTTAG
62 -ATGGTGCCTAATCC-TAAAAAGAATGGAGATTAG-TACGAGATTC-ATGTTTGTCTTATTTTA-
* ** * * * * *
1167699 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
122 GAGACAAACTTTAATTCTATGAAAAAGAGGG--AA-A
* ** ** * * * * * * *
1167736 AAAGATTTTCACG-GAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATA
1 AAAGCTTTTCTTGCG-AAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * * ** *
1167800 GTGCCTACTCATGAAATGAA---AGATCT-TTACTAGAATCCATGCTTATC-GCTTGT-GAGGCA
65 GTGCCTAATCCTAAAAAGAATGGAGAT-TAGTACGAG-ATTCATGTTTGTCTTATTTTAGA-G-A
* ** *
1167859 CGAACTTGGA--CTA-GTAAAATTAGTA-GGAGA
126 CAAACTTTAATTCTATG-AAAA--AG-AGGGAAA
* * * * * * *
1167889 AAAGCCTTTCTTGTGAAACTACAGCACCAATATCATGTATCCTAATGGGAAAACTATATTTATGG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
1167954 TGCCTAGTCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCATATTTTAGAGACAAA
66 TGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAAA
* *
1168019 CTTTAATTCTATGAAAACGAGTGAAAA
130 CTTTAATTCTATGAAAAAGAG-GGAAA
* * * * * *
1168046 AAAGCTTTTCTTGCGACA-TCAAAGCATCAATGTCGTGTATCCTAAT-A-AAGGGAATGTGTTTT
1 AAAGCTTTTCTTGCGAAACT-AAAGCATCAATATCATGTATCCTAATGAGAA--GACTATGTTTA
* * * * * * * * *
1168108 TGGTTCCCAATCCTAAAAAGAATGGAGA-CAGTTACGAGAATCGATGTTTATGTTATTTAAGGGT
63 TGGTGCCTAATCCTAAAAAGAATGGAGATTAG-TACGAGATTC-ATGTTTGTCTTATTTTAGAGA
** * * * * *
1168172 TGAACTTTTATT-TTTAAAAAAATAGGATAAAGA
126 CAAACTTTAATTCTAT-GAAAAAGAGG--GAA-A
* * * * ** * * * * * * *
1168205 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATGCTAATGATG-AGAATATGCTCATT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTATG
* * * * * * * * *
1168269 GTGCCTAATCATAAAAAGAAAGAAGATCATTACTAGAATCCATGTTGGTC-TCTTTT-GAGGCAC
65 GTGCCTAATCCTAAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGA-G-AC
* * *
1168332 AAAC-ATAGATTTTACT-AAAATTG-GTAGGAAA
127 AAACTTTA-ATTCTA-TGAAAA-AGAG--GGAAA
* * * * * *
1168363 AAGGCCTTTCTTGC-AAAATCAAAGCA-CTATTATCGTATATCCTAATGAGAAGACTATGTTTAT
1 AAAGCTTTTCTTGCGAAACT-AAAGCATC-AATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * *
1168426 AGTGCCTCATCCTAAAAAGAATAGG-GATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAAAT
64 GGTGCCTAATCCTAAAAAGAAT-GGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGAC
* * * *
1168490 AATCTTTGATTCTATCAAAAAAGATGGAAAGA
127 AAACTTTAATTCTAT-GAAAAAGA-GGGAA-A
* * ** * * * * * * *
1168522 AAAGCTTTCCTTGTGACCCTAAAACATCAATGTCTTGTATCCTAATGCAG-GGAATAGGTTTTTG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATG-AGAAGACTATGTTTATG
* ** * * * * * *
1168586 GTTCAC-AATTTTGAAAAGAATGGAGATT-GTTACGAGAATTGATGCTTGTCTTATTTAAGGGAT
65 GTGC-CTAATCCTAAAAAGAATGGAGATTAG-TACGAG-ATTCATGTTTGTCTTATTTTAGAGAC
* * * * * *
1168649 GAACTTTGATTTTAAGGAAAATAGGGCAAAGA
127 AAACTTTAATTCTATGAAAAAGAGGG--AA-A
* * * ** * * * * *
1168681 AAAGATTTTCGTGCAAAAGAAAATCATCAATATCATTTATCCTAA-GAAGAAGAATGTGTTTATA
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATG-AGAAGACTATGTTTATG
* * * * * * * * * * * *
1168745 GTGCTTAATCATAAAATGAATGAAGATCATTACTAAAATCCATGTTTATC-TCTTTT-GAGGCAT
65 GTGCCTAATCCTAAAAAGAATGGAGATTAGTAC-GAGATTCATGTTTGTCTTATTTTAGAGACA-
** ** *
1168808 GAACTAGACATTACTA--AAACTGGTGGGAAA
128 -AACTTTA-ATT-CTATGAAA-AAGAGGGAAA
* * * * * * *
1168838 AAAGCCTTTCTTGC-AAAATCAAAGCACCAGTATCGTGTATCCTAATGAGAGGACTATGTTTATA
1 AAAGCTTTTCTTGCGAAACT-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * *
1168902 GTGCCTTATCCTGAAAAA-AATGGGGATTAGTGCGTGTATTCATTTTTGTCTTATTTAAGAGACA
65 GTGCCTAATCCT-AAAAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACA
* * * * *
1168966 AATTTTGATTTTAT-CAAAAGCAATGGAAGGA
128 AACTTTAATTCTATGAAAAAG--AGGGAA--A
* * * * * *
1168997 AATGCTTTTCTTGAGACACTAAAGCATCAATGTCA-GTATCCTAAT-A-AAG-CGAATGCTTTTT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATG-TTTAT
** * * * * * * * *
1169058 CATTTCCCAA-CCTTGAAAAA-AATGGAGACT-GTTATGAGAATCGATGTTTGTTTTATTTAAGG
64 -GGTGCCTAATCC-T-AAAAAGAATGGAGATTAG-TACGAGATTC-ATGTTTGTCTTATTTTAGA
** * * * *
1169120 GATGAACTTTGATTTTAAAGAAAATAG-GGCAAAGA
124 GACAAACTTTAATTCT-ATGAAAA-AGAGG-GAA-A
* *** * ** * * * * * * * *
1169155 AAAGATTTTGACGCAAAAGAAAATCATCAACATTAT-TCATCCTAGTGAGGAGAATGTGTTTATA
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGT-ATCCTAATGAGAAGACTATGTTTATG
* * * ** * * * * * *
1169219 GTGCCTACT-CAAAAAATGAA-AGATCTTTATTA-GA-ATCCATGCTTATC-TCTTGT-GAGGCA
65 GTGCCTAATCCTAAAAA-GAATGGA-GATTAGTACGAGATTCATGTTTGTCTTATTTTAGA-G-A
* ** *
1169278 CGAACTTGGA--CTA-GTAAAATTAGTA-GGAGA
126 CAAACTTTAATTCTATG-AAAA--AG-AGGGAAA
* * * * * *
1169308 AAAGCCTTTCTTGTGAAACTAAAGCACCAATATCATGTATCCTAAAGAGAAAACTATATTTATGG
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
1169373 TGCCTAGTCCTAAAAAGAATAGG-GATTAGTATGAGCATTCATGTTTGCCATATTTTAGAGACAA
66 TGCCTAATCCTAAAAAGAAT-GGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTTAGAGACAA
1169437 ACTTTAATTCTATGAAAAACGAGGGAAAA
129 ACTTTAATTCTATGAAAAA-GAGGG-AAA
* * * * *
1169466 AAAGCTTTTCTTGCGACACCAAAGCATCACTGTCGTGTATCCTAAT
1 AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAAT
1169512 AAAGGGAATG
Statistics
Matches: 3283, Mismatches: 1153, Indels: 685
0.64 0.23 0.13
Matches are distributed among these distances:
152 2 0.00
153 201 0.06
154 103 0.03
155 32 0.01
156 192 0.06
157 367 0.11
158 1064 0.32
159 1163 0.35
160 116 0.04
161 38 0.01
162 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (155 bp):
AAAGCTTTTCTTGCGAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTAATCCTAAAAAGAATGGAGATTAGTACGAGATTCATGTTTGTCTTATTTTAGAGACAAAC
TTTAATTCTATGAAAAAGAGGGAAA
Found at i:1174094 original size:945 final size:946
Alignment explanation
Indices: 1172255--1174485 Score: 2865
Period size: 945 Copynumber: 2.3 Consensus size: 946
1172245 TTGTGACATC
*
1172255 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATG-G-TTTTACTTCCCAATCTTGAAAAGAAT
** * * *
1172320 GGAGACTGTTACGAGAATCGATGTTTGTGTTATTTAAGGGATGAACCTTT-ATTTTAAGAAAAAT
64 GGAGACTGTTAAAAGAATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAAT
* * * * * * *
1172384 ATGACAAAAAAAAGATTTCCATGTAAAAGAATATCATCAATATCATTTATGCTAATGATGAGAAT
128 AGGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * ** * * *
1172449 ATGCTTATTGTGCCTAATCATAAAAAGAAAGAAGATCATTACCGGATTCCATGTTTGTCTCTTTT
193 GTGTTTATAGTGCCTACTCATAAAATG--A-AAGATCATTACTAGAATCCATGTTTATCTCTTAT
* * * * * * * * * *
1172514 AAGGCATGAACATAGACTTTACTGAAATTGGTGGGAAAAAAGCCTTTCTTG-CAAAATCAAAGCA
255 GAGGCACGAACTTGGAC-TTAGTAAAATTAGTAGGAAAAAAGCCTTTCTTGTGAAACT-AAAGCA
* * * * * *
1172578 CCAGTATCGTGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTGAAAAGAATGGGGAT
318 CCAATATCATGTATCCTAATGAGAAAACTATATTTATAGTGCCTCATCCTGAAAAAAATGAGGAT
* * * * * *
1172643 TAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAATCTTTGATTCTATCAAAAATGATGGAA
383 TAGTACGAGTATTCATATTTGTCTATTTTAAGAGACAAACTTTAATTCTATCAAAAATGATGGAA
* *
1172708 AGAAAAGCTTTTCTTGCGACCCTAAAACATCAATGTCATGTATCCTAATGAAGGGAATAGGTTTT
448 AGAAAAGCTTTTCTTGCGACCCTAAAACATCAACGTCATGTATCCTAATAAAGGGAATAGGTTTT
** *
1172773 TGGTTCCCAATTTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATATAAGGGAT
513 TGGTTCCCAATCCTGAAAAGAATGGAGACAGTTACGAGAATCGATGCTTGTCTTATATAAGGGAT
* * ** *
1172838 GAACTTTGATTTTAAAGGAAATAGGGCAAAGAAAAGATTTCCCTGCAAAAGAAAATCATCAATAT
578 GAACTTTGATTTGAAAGAAAATAGAACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * *
1172903 CATTTATCCTGATAAGGAGAATGTGTCTATAGTGCTTAATCATAAAATGAAAGAAGATCATTACT
643 CATTTATCCTAATAAGGAGAATATGTCTATAGTGCCTAATCATAAAAAGAAAGAAGATCATTACT
* *
1172968 AGAATCCATGTTTGTCTCTTTTGAGGCATAAACATAGACTTTACTAAAATTGGTGGGAAAAAAGC
708 AGAATCCATATTTGTCTCTTTTGAGGCACAAACATAGACTTTACTAAAATTGGTGGGAAAAAAGC
* * *
1173033 CTTTCTTGGAAAATCAAAGCACCAGTATCGTGTATCCAAATGAGAGGACTATGTTTATAGTGCCT
773 CTTTCTTGCAAAATCAAAGCACCAGTATCGTATATCCAAATGAGAAGACTATGTTTATAGTGCCT
*** * * ** **
1173098 CATCCTTTTCATGATGAGGATTAGTACGTGTATTCATTTTTATCGTATTTAAGAGTTAAACTTTG
838 CATCCTTAAAAAGATGAGGATTAGTACGAGTATTCACGTTTATCGTATTTAAGAAATAAACTTTG
* * * *
1173163 ATTTTATCAAAAGCA-ATGGAAGGAATAGCTTTTCTAGAGACACT
903 ATTCTATCAAAA-AAGATGGAAAGAAAAGCTTTTCTAGAGACACT
* * * *
1173207 AAAGCATCAATGTCACGTATCCTAATAAAGGGAATGCATTTTCATTTCCCAACCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATG-GTTTT-ACTTCCCAATCTTGAAAAGAAT
* *
1173272 GGAGACTGTTATAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
64 GGAGACTGTTAAAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * *
1173337 GGGCAAAGAAAAGATTTTCGTGCAAAAGAAAATCATCAATATCAGTTATCCTAATGAGGAGAATG
129 GGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * **
1173402 TGTTTATAGTGCCTACTCATCAAATGAAAGATCTTTACTAGAATCCATGCCTATCTCTTATGAGG
194 TGTTTATAGTGCCTACTCATAAAATGAAAGATCATTACTAGAATCCATGTTTATCTCTTATGAGG
* *
1173467 CACGAACTTGGAC-TAGTAAAATTAGTAGGAGAAAAGCCTTTATTGTGAAACTAAAGCACCAATA
259 CACGAACTTGGACTTAGTAAAATTAGTAGGAAAAAAGCCTTTCTTGTGAAACTAAAGCACCAATA
*
1173531 TCATGTATGCC-AATGAGAAAACTATATTTATGGTGCCT-AGTCCT-AAAGAAAATGAGGATTAG
324 TCATGTAT-CCTAATGAGAAAACTATATTTATAGTGCCTCA-TCCTGAAA-AAAATGAGGATTAG
* *
1173593 TACGAGTATTCATATTTGTCATATTTT-AGAGACAAACTTTAATTCTATGAAAAATGA-GGGAA-
386 TACGAGTATTCATATTTGTC-TATTTTAAGAGACAAACTTTAATTCTATCAAAAATGATGGAAAG
* * **
1173655 AAAAGCTTTTCTTGCGACACC-AAAGCGTCAACGTTGTGTATCCTAATAAAGGGAAT-GTGTTTT
450 AAAAGCTTTTCTTGCGAC-CCTAAAACATCAACGTCATGTATCCTAATAAAGGGAATAG-GTTTT
* * * *
1173718 TGGTTCCCAATCCTGAAAAGAATGGAGACAGTTACGAGAATCGATGTTTGTGTTATTTATGGGAT
513 TGGTTCCCAATCCTGAAAAGAATGGAGACAGTTACGAGAATCGATGCTTGTCTTATATAAGGGAT
* * * *
1173783 GAACTTTTATTTG-AAGAAAAATATAACAAAGAAAAGATTTCCATGTAAAAGAATATCATCAATA
578 GAACTTTGATTTGAAAG-AAAATAGAACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * * *
1173847 TCATTTATGCTAATGATGAGAATATG-CTTATTGTGCCTAATGATAAAAAGAACGAAGATCATTA
642 TCATTTATCCTAATAAGGAGAATATGTC-TATAGTGCCTAATCATAAAAAGAAAGAAGATCATTA
* * *
1173911 CTAGAATCCATATTTGTTTCTTTTGAGGCACAAACGTAGATTTTACTAAAATTGGTGGGAAAAAA
706 CTAGAATCCATATTTGTCTCTTTTGAGGCACAAACATAGACTTTACTAAAATTGGTGGGAAAAAA
* * * * *
1173976 GCTTTTCTTGCAAAATCAAAGCACTATTATCGTATATCCTAATTAGAAGACTATGTTTATAGTGC
771 GCCTTTCTTGCAAAATCAAAGCACCAGTATCGTATATCCAAATGAGAAGACTATGTTTATAGTGC
* * *
1174041 CTTATCC-TAAAAAGAAT-AGGGATTAGTACGAGTATTCACGTTTATCTTATTTAAGAAATAATC
836 CTCATCCTTAAAAAG-ATGA-GGATTAGTACGAGTATTCACGTTTATCGTATTTAAGAAATAAAC
* *
1174104 TTTGATTCTATCAAAAAAGATGGAAAGAAAAGCTTTTCTTGCGACACT
899 TTTGATTCTATCAAAAAAGATGGAAAGAAAAGCTTTTCTAGAGACACT
* * * * *
1174152 AAAGCGTCAATATCATGTTTCCTAATGAAGGGAACGTGGTTTTAGTTCCCAATCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAA--TGGTTTTACTTCCCAATCTTGAAAAGAAT
* *
1174217 GGAGACTGTTAAAAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTTAAAGAAAATA
64 GGAGACTGTTAAAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
** *
1174282 GGGCAAAGAAAAGATTTTCACATAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGATTG
129 GGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * *
1174347 TGTTTATAGTACCTACTCATAAAATGAAAGATCATTACTAGAATCCATGTTTATCTCTTGTGAGA
194 TGTTTATAGTGCCTACTCATAAAATGAAAGATCATTACTAGAATCCATGTTTATCTCTTATGAGG
* *
1174412 CACGAACTTGGACTTTAGTAAAATTAGTAGGAAAAAAACCTTTCTTATGAAACTAAAGCACCAAT
259 CACGAACTTGGAC-TTAGTAAAATTAGTAGGAAAAAAGCCTTTCTTGTGAAACTAAAGCACCAAT
1174477 ATCATGTAT
323 ATCATGTAT
1174486 TGTTAGCATC
Statistics
Matches: 1106, Mismatches: 155, Indels: 41
0.85 0.12 0.03
Matches are distributed among these distances:
944 10 0.01
945 655 0.59
946 14 0.01
947 185 0.17
948 11 0.01
949 39 0.04
950 1 0.00
951 8 0.01
952 183 0.17
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (946 bp):
AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGGTTTTACTTCCCAATCTTGAAAAGAATGG
AGACTGTTAAAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTGCCTACTCATAAAATGAAAGATCATTACTAGAATCCATGTTTATCTCTTATGAGGCA
CGAACTTGGACTTAGTAAAATTAGTAGGAAAAAAGCCTTTCTTGTGAAACTAAAGCACCAATATC
ATGTATCCTAATGAGAAAACTATATTTATAGTGCCTCATCCTGAAAAAAATGAGGATTAGTACGA
GTATTCATATTTGTCTATTTTAAGAGACAAACTTTAATTCTATCAAAAATGATGGAAAGAAAAGC
TTTTCTTGCGACCCTAAAACATCAACGTCATGTATCCTAATAAAGGGAATAGGTTTTTGGTTCCC
AATCCTGAAAAGAATGGAGACAGTTACGAGAATCGATGCTTGTCTTATATAAGGGATGAACTTTG
ATTTGAAAGAAAATAGAACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
CTAATAAGGAGAATATGTCTATAGTGCCTAATCATAAAAAGAAAGAAGATCATTACTAGAATCCA
TATTTGTCTCTTTTGAGGCACAAACATAGACTTTACTAAAATTGGTGGGAAAAAAGCCTTTCTTG
CAAAATCAAAGCACCAGTATCGTATATCCAAATGAGAAGACTATGTTTATAGTGCCTCATCCTTA
AAAAGATGAGGATTAGTACGAGTATTCACGTTTATCGTATTTAAGAAATAAACTTTGATTCTATC
AAAAAAGATGGAAAGAAAAGCTTTTCTAGAGACACT
Found at i:1174919 original size:20 final size:20
Alignment explanation
Indices: 1174888--1174941 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
1174878 CTACCACTGT
* *
1174888 TTGTATCAATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
*
1174908 TTGTTTCGATACATGATGAA
1 TTGTATCGATACATGATGAA
1174928 TTGTATCGATACAT
1 TTGTATCGATACAT
1174942 TGCTTATAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:1183077 original size:47 final size:46
Alignment explanation
Indices: 1183018--1183111 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 46
1183008 TTTGATTAAG
* *
1183018 GGGGAGAAAAACTCTTTAACCGTTTAAAAGGGGAGAAATTTTTATAA
1 GGGGAGAAAAACTCTTTAACCGCTT-AAAGGGGAGAAAATTTTATAA
* *
1183065 GGGGAGAAAAACTCTTTAACCGCTTAAGGGGGAGAAAATTTTGTAA
1 GGGGAGAAAAACTCTTTAACCGCTTAAAGGGGAGAAAATTTTATAA
1183111 G
1 G
1183112 CATTAATTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 19 0.44
47 24 0.56
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.26
Consensus pattern (46 bp):
GGGGAGAAAAACTCTTTAACCGCTTAAAGGGGAGAAAATTTTATAA
Found at i:1183706 original size:13 final size:13
Alignment explanation
Indices: 1183688--1183714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1183678 ACATTATGCT
1183688 TTGTATCGATACA
1 TTGTATCGATACA
1183701 TTGTATCGATACA
1 TTGTATCGATACA
1183714 T
1 T
1183715 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1183744 original size:20 final size:19
Alignment explanation
Indices: 1183698--1183756 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
1183688 TTGTATCGAT
* *
1183698 ACATTGTATCGATACATGT
1 ACATTGTATCAATACATGA
*
1183717 TCATTGTATCAATACATGA
1 ACATTGTATCAATACATGA
*
1183736 ACAATTGTATCTATACATGA
1 AC-ATTGTATCAATACATGA
1183756 A
1 A
1183757 ACTGGCAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (19 bp):
ACATTGTATCAATACATGA
Found at i:1183807 original size:20 final size:20
Alignment explanation
Indices: 1183782--1183835 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1183772 CTGCCACTGT
* *
1183782 TTGTATCAATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
1183802 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
1183822 TTGTATCGATACAT
1 TTGTATCGATACAT
1183836 TGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:1187223 original size:947 final size:949
Alignment explanation
Indices: 1184539--1188848 Score: 4953
Period size: 947 Copynumber: 4.6 Consensus size: 949
1184529 CCTTGAGCTT
* * *
1184539 TCATGTATCCTAATGAGAAGACTATGTTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTA
1 TCATGTATCCTAATGAGAAGACTATG-TTTATAGTGCCTCATCCTAAAAAGAATGGGGATTAGTA
* * * *
1184604 CGAGTATTCATGTTTGCCTTATTTTAGAGACAAACTTTAATTCTAT-GAAAAATGATGGAAAAAA
65 CGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCGAAAAATGATGGAAAAAA
* * * * * *
1184668 AGCTTTTCTCGCGACACCAAAGTATCAATGTCGTGTATCCTAGTAAAGGGAATATGTTTTTGGTT
130 AGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTT
* * * * *
1184733 CCCAATCC-TGAAAAGAATGGAGACTGTTACAAGAATCGATGTTTATGTTATTCAAGGGATGAAC
195 CCCAA-CCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * * *
1184797 TTTTAGTTTAA-GAAAATAGGACAAAGAAAAGATTTCCA-AGCAAAAGAAAATCATCAATTTCTT
259 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACA-CAAAAGAAAATCATCAATATCAT
** * * *
1184860 TTATGC-TAATAAATAGAATGTGTTTATAGTGCTTAATCATAAAATGAAATAAGAACATTACTAG
323 TTAT-CTTAATAAGGAGAATGTGTTTATAGTGCTTACTCATAAAATG--A-AAGATCTTTACTAG
* * * * * * *
1184924 AATCTATGTTCGTCTCTTTTGAGGCACAAACATAGACTTCATTAAAATTGGT-GGAAAAAGCCTT
384 AATCCATGTTTGTCTCTTTTGAGGCACGAACTTGGACTTTACTAAAATTGGTGGGAAAAAGCCTT
* * *
1184988 TCTTGCAAAATCAAAGCACCGGTATCGTGTATCCTAATGAGAAGACTATCG-TTATGGTGCCTCA
449 TCTTGCAAAATCAAAGCACCGGTATCATGTATCCTAATGAGAAGACTAT-GTTTATAGTGCCTAA
* * * ** * *
1185052 TCCTGAAAAGAATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGGTAATCTTTGAT
513 TCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTAAT
* * ** **
1185117 TCTATTAAAAATGTTGGAAAGAAAAGCGTTTCTCTTGCGAC-CCTAAAATATCAATGTCATGTAT
578 TCTATGAAAAACGAGGGAAAGAAAAGC-TTT-TCTTGCGACACC-AAAGCATCAATGTCATGTAT
* *
1185181 CCTAATGAAGGGAATGTGTTTTTGGTTCCCAA-CTTTGAAAAGAATGGAGATTGTTACGAGAATC
640 CCTAATAAAGGGAATGTGTTTTTGGTTCCCAATC-TTGAAAAGAATGGAGACTGTTACGAGAATC
* * * * *
1185245 AATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCT
704 GATGCTTGTGTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGACAAAGAAAAGATTTCC
* * * *
1185310 GTGCAAAAGAAAATCATC-ATATCATTTATCCTAATGAGGAGAATATATTTACAGTGCTTAATCA
769 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA
* *
1185374 TAAAATGAAAGAAGATCATTA-TTAGAATCCATGTTTGCCTCTTTTGAGGCACGAACATAGACTT
834 TAAAATGAAAGAAGATCATTAGCTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTT
** * * **
1185438 TACTAAAATTGGTGGGAAAAAAGAATATCTTGGAAAATCAAAGCACCGGTA
899 TACTAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCACCATTA
* * * * * *
1185489 TCGTGTATCCTAATGAGAGGACAATG-TTATAGTGTCTCATCCTGAAAAGAATGGGGATTGGTAC
1 TCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTAAAAAGAATGGGGATTAGTAC
* * * * * *** *
1185553 GTGTATTCATTTTTGTCTTATTTAAGAGGTGAACTTTGATTTTATC-AAAAGCAATGGAATGAAA
66 GAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCGAAAAATGATGGAA-AAAA
* * ***
1185617 AGGTTTTCTTGAGACACTAAAGCATCAATGTCATGTA---TAATAAAGGGAATGTGTTTTCATTT
130 AGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTT
* * * *
1185679 CCAAACCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTATCTTATTTAAGGGAAGAACT
195 CCCAACCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * *** *
1185744 TTGATTTT-AGGAAAATAGGGCAAAGAAGAGATTTTCACGCAAAAGACTTTCACCAATATCATTT
260 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACAAAAGAAAATCATCAATATCATTT
* * * *
1185808 ATCTTAATGAGAAAAATGTGTTTATAGTGCCTACTCATAAAATGAAAGATCTTTACTAGAATCCA
325 ATCTTAATAAGGAGAATGTGTTTATAGTGCTTACTCATAAAATGAAAGATCTTTACTAGAATCCA
* * * * * *
1185873 TGCTTATCT-TTTGTGAGGCACGAACTTGGATTTTAGTTAAATTAGTGGGAGAAAAGCCTTTCTT
390 TGTTTGTCTCTTT-TGAGGCACGAACTTGGACTTTACTAAAATTGGTGGGA-AAAAGCCTTTCTT
* * * * * *
1185937 GTGAAAA-CTAAAGCACCGATATCATGTGTCCTAAAGAGAAAACTATGTTTAT-GTTGCCTAGTC
453 G-CAAAATC-AAAGCACCGGTATCATGTATCCTAATGAGAAGACTATGTTTATAG-TGCCTAATC
* * * *
1186000 CTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCATATTTTAGAGACAAACTTTAATTC
515 CTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTAATTC
* ***
1186065 CATGAAAAACGAGGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTGGGTATCCTAA
580 TATGAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* *
1186129 TAAAGGGAATGTGTTTTTGGTTCCCAATCTTG-AAAGAATGGAGATTGTTACGAGAATCGATGTT
645 TAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * *
1186193 TGTGTTATTTAAGGGATAAACTTTTATTTTGAGAAAAATAGGACAAAGAAAAGATTTGCATGAAA
710 TGTGTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCATGCAA
* * *
1186258 AAGAAAATCATCAATATCATTTATGCTAATGATGAGAATATGCTTATAGTGCCTAATCATAAAAT
775 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAAT
* *
1186323 GAAAGAAGATCATTAGC-AGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTGACTAA
840 GAAAGAAGATCATTAGCTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTTTACTAA
* * *
1186387 AATTGGTGGGAAAAAAGCCTTTTTTGCAAAATCGAAGCACTATTA
905 AATTGGTGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCACCATTA
* * * * *
1186432 TCGTGTATCCTAGTGACAAGACTATGTTTATAGTGCCTCATCTTGAAAAGAATGGGGATTAGTAC
1 TCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTAAAAAGAATGGGGATTAGTAC
* * *
1186497 GAGTATTCATGTTTGTCTTATTTAAGAGATAATCTTTGATTTTATCGAAAAA-AATGGAAAGAAA
66 GAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCGAAAAATGATGGAAA-AAA
* * * *
1186561 AGCTTTTCTTGCGATACTTAAAGCATCAATATCATGTATCCTAATGAAGGGAACGTGTTTTTGGT
130 AGCTTTTCTTGCGACAC-TAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGT
* * *
1186626 TCCCAACCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTCTTTAAGGGATGAAC
194 TCCCAACCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * *
1186691 TTTGATTTTAAGGAAAATAGGGTAAGGAAAAGCTTTTCACACAAAAGAGAACCATCAATATCATT
259 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACAAAAGAAAATCATCAATATCATT
* * *
1186756 TATCTTAACAAGGAGAATGTGTTTATAGTGCCTACTCACAAAATGAAAGATCTTTACTAGAATCC
324 TATCTTAATAAGGAGAATGTGTTTATAGTGCTTACTCATAAAATGAAAGATCTTTACTAGAATCC
* * * * *
1186821 ATGTTTATCTCTTGTGAGGCACGAACTTGGACTTTAGTAAAATTAGTAGGAAAAACGCCTTTCCT
389 ATGTTTGTCTCTTTTGAGGCACGAACTTGGACTTTACTAAAATTGGTGGGAAAAA-GCCTTT-CT
* ** * *
1186886 GTG-AAACT-AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCAAATCA
452 -TGCAAAATCAAAGCACCGGTATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCC
*
1186949 T-AAAAGAATGGGGATTAGTACGAGTATTCGTGTTTGCCTTATTT-AGAGACAAACTTTAATTCT
516 TGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTAATTCT
* ** * *
1187012 ATGACAAACGAGGGAAA-AAAAGCTTTTCACGCGACACCAAAGCATCAATGTCCTATATCCTAAT
581 ATGAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * *
1187076 AAAGGAAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGACTATTACGAGAATCGATGTTT
646 AAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* *
1187141 GTGTTATTCAAGGGATGAACTTTTATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCATGCAAA
711 GTGTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCATGCAAA
* * *
1187206 AGAAAATCATTAATATCATTTA-CGCTAATGAGGAGAATGTGTTTATAGTGCTTAATCATAAAAT
776 AGAAAATCATCAATATCATTTATC-CTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAAT
* * * * * * *
1187270 GAAATAAGATCATTA-CTAGAATCTATGTTTGTCTTTTTTGAGGCATGAACGTAGACTTCACCAA
840 GAAAGAAGATCATTAGCTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTTTACTAA
*
1187334 AATTGGTGGGAAAAAAGCCTTTCCTGCAAAATCAAAGCACCGATT-
905 AATTGGTGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCACC-ATTA
*
1187379 TCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTAAAAAGAATGGGGATTAGTAT
1 TCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTAAAAAGAATGGGGATTAGTAC
* *
1187444 GAGTATTCATGTTTATCTTATTTAAGAGATAATCTTTGATTCTATC-AAAAATGATGGGAAAAAA
66 GAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCGAAAAATGAT-GG-AAAAA
* *
1187508 AAGCTTTTCTTGCGACCCTAAAACATCAATGTCATGTATCCTAA-AGAAGGGAATGTGTTTTTGG
129 AAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATA-AAGGGAATGTGTTTTTGG
* * *
1187572 TTCCCAACTTTGGAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
193 TTCCCAACCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * ****
1187637 GTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTTTGTGCAAAAGAAAATCATCAATATCAT
258 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACAAAAGAAAATCATCAATATCAT
* ** *
1187702 TTATCCTAATGTGGAGAATGTGTTTATAGTGCTTAAC-CAT-AAATGAAAGAAAATC-ATACTAG
323 TTATCTTAATAAGGAGAATGTGTTTATAGTGCTT-ACTCATAAAATGAAAG---ATCTTTACTAG
* * *
1187764 AATCCATGTTTGTCTCTTTTGA-GTATGAACATAGGACTTTACTAAAATTGGTGGGTAAAAAAG-
384 AATCCATGTTTGTCTCTTTTGAGGCACGAAC-TTGGACTTTACTAAAATTGGTGGG--AAAAAGC
* * *
1187827 CTCTTCTTGCAAAATCAAAGCACCAGTATCATGTATCCTAATGAGAGGTCTATGTTTATAGTGCC
446 CT-TTCTTGCAAAATCAAAGCACCGGTATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCC
* * * * * *
1187892 TCATCTTGAAAAGAATGGGGATTAGTACGTGTATTCATTTTTGTCTTATTTAAGAAACAAACTTT
510 TAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTT
* * * * * * * * *
1187957 GATTTTATTAAAAGCAATGGAAAGAAAAGCGTTTCTTGAGACACTAAAGCATCAATGTCATGTAT
575 AATTCTATGAAAAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * ** *** ** *
1188022 CCCAACAAAAGGAATGCATTTTCATTCTCCCAGCCTTGAAAAGAATGGAGACTGTTATGAGAATC
640 CCTAATAAAGGGAATGTGTTTTTGGT-TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
* * * * *
1188087 GATGCTTGT-CTATTTAAGGGATGAACTTTGATTTTGAGGAAAATAGGGCAAAGAAAAGATTTTC
704 GATGCTTGTGTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGACAAAGAAAAGATTTCC
* * *
1188151 A--CACAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTACTC
769 ATGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATC
* * * * * *
1188214 ATAAAATG--A-AAGATC--TATGCTAAAATCCATGTTTATCTCCTATGAGGCACGAACTTGGAC
833 ATAAAATGAAAGAAGATCATTA-GCTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGAC
* * * ** *
1188274 TTTAGTAAAATTAGTAGGAAAAAAAGCCTTTCTTGTGAAA-CTAAAGCACCAATA
897 TTTACTAAAATTGGT-GGGAAAAAAGCCTTTCTTGCAAAATC-AAAGCACCATTA
* * * * * *
1188328 TCATGGAGCCTAACGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAA-AATGGGGGATTAGTA
1 TCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTAAAAAGAAT-GGGGATTAGTA
* * * * * * *
1188392 TGAGTATTCGGTGTTTGCCTTATTTTAGAGACAAACTTTAATTCTAT-GAAAAATGA-GGGAAAA
65 CGAGTATTC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCGAAAAATGATGGAAAAA
* * * * * * * *
1188455 AAGCTCTTT-TCGTGAAACCAAAGCATCAATGTCGTGTATCCGAATAAAAGAAATGTGTTTTTGG
129 AAGCT-TTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG
* * * * * * *
1188519 TTCCCAATCC-TAAAAAGAATGCAGTCTGTTACGAGAATCGATGTTTGTGTTATTCAAGGGTTGA
193 TTCCCAA-CCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
1188583 ACTTTTATTTTAAGAAAAATAGGAC-AAGAAAAGA-TTTC-CAGCCAAAGAAAATC-TCAATATC
257 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACA-CAAAAGAAAATCATCAATATC
* *
1188644 ATTTATCTTAATGAGGGAGAATGTGTTTATATTGCTTAAC-CATAAAATGAAAGAAGATCTTTAC
321 ATTTATCTTAAT-AAGGAGAATGTGTTTATAGTGCTT-ACTCATAAAATG--A-AAGATCTTTAC
* * * *
1188708 TAGAATCCATG-TTGCCTCTTTTGAAGCACGGACATAGGACTTTACTAAAATTGGTGGGAAAAAA
381 TAGAATCCATGTTTGTCTCTTTTGAGGCACGAAC-TTGGACTTTACTAAAATTGGTGGG-AAAAA
*
1188772 GCCTTTCTTGCAAAATCAAAGCACCGGTATCGTGTATCCTAATGAG-AGACTATGTTTATAGTGC
444 GCCTTTCTTGCAAAATCAAAGCACCGGTATCATGTATCCTAATGAGAAGACTATGTTTATAGTGC
* *
1188836 GTCAT-CTGAAAAG
509 CTAATCCTGAAAAG
1188849 GAATTTTTTT
Statistics
Matches: 2887, Mismatches: 398, Indels: 156
0.84 0.12 0.05
Matches are distributed among these distances:
942 100 0.03
943 269 0.09
944 136 0.05
945 111 0.04
946 473 0.16
947 749 0.26
948 359 0.12
949 346 0.12
950 111 0.04
951 91 0.03
952 101 0.03
953 41 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (949 bp):
TCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTCATCCTAAAAAGAATGGGGATTAGTAC
GAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCGAAAAATGATGGAAAAAAA
GCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTC
CCAACCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTA
TCTTAATAAGGAGAATGTGTTTATAGTGCTTACTCATAAAATGAAAGATCTTTACTAGAATCCAT
GTTTGTCTCTTTTGAGGCACGAACTTGGACTTTACTAAAATTGGTGGGAAAAAGCCTTTCTTGCA
AAATCAAAGCACCGGTATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAA
AGAATGGGGATTAGTACGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTAATTCTATGAA
AAACGAGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGG
GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTGTT
ATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAAAGA
AGATCATTAGCTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTTTACTAAAATTGG
TGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCACCATTA
Found at i:1196156 original size:474 final size:462
Alignment explanation
Indices: 1194129--1196217 Score: 1947
Period size: 475 Copynumber: 4.4 Consensus size: 462
1194119 GTTGTCATCA
* * * *
1194129 GAATGTGTTTTTGGTT-CCAACTTTGAAAAGATTAGAGAGACTGTTACGAGAATCGATACTTGTC
1 GAATGTATTTTTGGTTCCCAAC-CTGAAAAGA--ATAGAGACTGTTACGAGAATCGAT-GTTGTC
* * * * *
1194193 TTATTTAAGGGATGAACTTTGA-TTTACGGCAAATAAGG-AAACTAAAAGATTTTCGTGCAAAAG
62 TTATTTAA-GGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAAGATTTTCATGCAAAAG
* * * *
1194256 AAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTT-TTCATTAAATGA
125 -AAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCATAAAATG-
* * * *
1194320 AAGAAGAT-TATTACTAAAATCCACGTTAGTCTCTTTTGAGGCACGAACATAGACTTTACTAAAA
188 -A-AAGATCTA-T-CTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTTACT-AAA
* * * * * * * * *
1194384 TTGGTTGGAAGAAAGCCTTTCTTGCAAAA-TCAAAGCTCTAGTATCGTGTATCCTATGAGAAGAC
248 TTGGTGGGAAAAAAGCCTTTCTTGAAAAACT-AAAGCACCAGTATCATGTATCCTAAGAGAGGTC
* * * *
1194448 TATGTTTATAGTACCTCATCC-CAAAAAGAATGGGGATTAGTATTAGCATTCATGTTTGTCTTAT
312 TATGTTTATAGTGCCTCATCCTTAAAAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * * *
1194512 TTAAGAGATAATCTTTGATTGTATAAAA-AATGATGGAAAGAAAATCTTTTGTTGCGAC-CCTAA
376 TT-AGAGACAAACTTTGATTCTATAAAACAATG--GG-GA-AAAAGCTTTT-TCGTGACACC-AA
* * * * *
1194575 AACATCAATGTCATATATCCTAATGAAGG
434 AGCATCAATGTCATGTATCCCAATAAAAG
* * * * * * *
1194604 GAATGTGTTTTTGGTTCCCAGCTTTGAAAAGAACGAAAGACTATTACGAGAATCAATGCTTGTCT
1 GAATGTATTTTTGGTTCCCAAC-CTGAAAAGAA-TAGAGACTGTTACGAGAATCGATG-TTGTCT
* *
1194669 TTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCAAAAGAA
63 TATTTAA-GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
**
1194734 AATCATCAATATCATTTATCCTAATGGGGAGAATGTGTTTATAGTGCTTAATCATAAAATGAAAG
127 AATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCATAAAATG-AA-
1194799 GAGATCGTA-CTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTTACTAAATTGGT
190 -AGATC-TATCTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTTACTAAATTGGT
*
1194863 GGGAAAAAAGCCTTTCTTGCAAAAAC-AAAGCACCAGTTATCGTGTATCCTAAGAGAGGTCTATG
253 GGGAAAAAAGCCTTTCTTG-AAAAACTAAAGCACCAG-TATCATGTATCCTAAGAGAGGTCTATG
* *
1194927 TTTATAGTGCCTCATCC-TAAAAAGATTGGGATTAGTATGAGTATTCATGTTTGTC-TATTTAGA
316 TTTATAGTGCCTCATCCTTAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGA
* ** *
1194990 GATAATA-TTTGATTCTATCAAAA-ATGATGGAAAGAAAAGCTTTTTCTTGTGAC-CCTAAAACA
381 GACAA-ACTTTGATTCTAT-AAAACA--ATGGGGA-AAAAGCTTTTTC--GTGACACC-AAAGCA
* * *
1195052 TCAATGTCATGTATCCTAATGAAGG
438 TCAATGTCATGTATCCCAATAAAAG
* * * *
1195077 GAATGTATTTTTGGTTCCCAACTTTGAAAAGAATAGAGACTGTTACGAAAATCGATACTTGTCCT
1 GAATGTATTTTTGGTTCCCAAC-CTGAAAAGAATAGAGACTGTTACGAGAATCGAT-GTTGTCTT
*
1195142 ATTTAAAGGATGAACTTTGATTTTAAGG-AAATAGGG-AAATGAAAAGATTTTCGTGCAAAAGAA
64 ATTT-AAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAAGATTTTCATGCAAAAGAA
* * *
1195205 AATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAACCATAAAATGAAAG
127 AATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCATAAAATGAAAG
*
1195270 AAAATC-ATTACTAGAATCCATGTTTGTCTCTTTTGAGGTATGAACATAGACCTTTACTAAAATT
192 ---ATCTA-T-CTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGA-CTTTACT-AAATT
*
1195334 GGTGGGAAAAAAGCCTTTCTTGCAAAA-TCAAAGCACCAGTATCATGTATCCTAATGAGAGGTCT
250 GGTGGGAAAAAAGCCTTTCTTGAAAAACT-AAAGCACCAGTATCATGTATCCTAA-GAGAGGTCT
* * * *
1195398 ATGTTTATAGTGCCTCAT-CTTGAAAAGAATGGGGATTAGTACGTGTATTCATTTTTGTCTTATT
313 ATGTTTATAGTGCCTCATCCTT-AAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * * *
1195462 TAGAAACAAACTTTGATTTTATTAAAAGCAATGGAAAGAAAAAGCTTTTCTTGAGACACTAAAGC
377 TAGAGACAAACTTTGATTCTA-TAAAA-CAATGG--GGAAAAAGCTTTT-TCGTGACACCAAAGC
*
1195527 ATCAATGTCATGTATCCCAACAAAAG
437 ATCAATGTCATGTATCCCAATAAAAG
* *** * * *
1195553 GAATGCATTTTCATTTCCCAGCCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTT
1 GAATGTATTTTTGGTTCCCAACC-TGAAAAGAATAGAGACTGTTACGAGAATCGATG-TTGTCTT
* **
1195618 ATTTAAGGGATGAACTTTGATTTTGAGGAAAATAGGGCAAAGAAAAGATTTTCACACAAAAGAAA
64 ATTTAA-GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* *
1195683 ATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTACTCATAAAATGAAAGA
128 ATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCATAAAATGAAAGA
* * * * * * * * * *
1195748 TCTATGCTAAAATCCATGTTTATCTC-CTAGAGGCACG-ACTTGGACTTTAGTAAACTTCGTAGG
193 TCTAT-CTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTTACTAAA-TTGGTGGG
* * * *
1195811 AACAAAAGCCTCTTTCTTGGAAAACTAAAGCAACA-CAT-ATGTATCCTAACG-GTCA-GACTAT
256 AA-AAAAG-C-CTTTCTTGAAAAACTAAAGCACCAGTATCATGTATCCTAA-GAG--AGGTCTAT
* * * * *
1195872 GTTTATGGTGCCTAATCCTTAAAAAAAATGGGGATTAGTTATGAGTATTTAGGTTTGCCTTATTT
315 GTTTATAGTGCCTCATCCTT-AAAAAAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTA-TT
* * * *
1195937 TAGAGACAAACTTTCATTCTAGAAAACAACGGGGCAAACAGCTCTTTTCGTGACACCAATAGCAT
377 TAGAGACAAACTTTGATTCTATAAAACAATGGGG-AAAAAGCT-TTTTCGTGACACCAA-AGCAT
* * *
1196002 CCATGTCGCTGTATCCGAATAAAAG
439 CAATGTC-ATGTATCCCAATAAAAG
* * * ** * * *
1196027 AAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATTCAGTCTGTTCCGAGAATCGATGTTGTGTTA
1 GAATGTATTTTTGGTTCCCAA-CCTGAAAAGAATAGAGACTGTTACGAGAATCGATGTTGTCTTA
* * * * * * *
1196092 -TTCAGGTTGAACTTTTATTTTAAGGAAAAATCGGACAAAAGAAAAAGATTTCCATGCCAAAG-A
65 TTTAAGGATGAACTTTGATTTTAAGG-AAAATAGGGC-AAAG-AAAAGATTTTCATGCAAAAGAA
* * * * *
1196155 AATCTTC-ATATCA-TTATCTTAATG-AGAGAATGTGTTTATATTGCTTAAACATAAACTGAAAG
127 AATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCATAAAATGAAAG
1196217 A
192 A
1196218 AGATCTTTAC
Statistics
Matches: 1381, Mismatches: 165, Indels: 141
0.82 0.10 0.08
Matches are distributed among these distances:
468 2 0.00
469 1 0.00
470 42 0.03
471 137 0.10
472 191 0.14
473 174 0.13
474 262 0.19
475 266 0.19
476 194 0.14
477 103 0.07
478 9 0.01
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (462 bp):
GAATGTATTTTTGGTTCCCAACCTGAAAAGAATAGAGACTGTTACGAGAATCGATGTTGTCTTAT
TTAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC
ATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCATAAAATGAAAGATCT
ATCTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACATAGACTTTACTAAATTGGTGGGAAAAA
AGCCTTTCTTGAAAAACTAAAGCACCAGTATCATGTATCCTAAGAGAGGTCTATGTTTATAGTGC
CTCATCCTTAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAGACAAACTTT
GATTCTATAAAACAATGGGGAAAAAGCTTTTTCGTGACACCAAAGCATCAATGTCATGTATCCCA
ATAAAAG
Found at i:1196180 original size:948 final size:943
Alignment explanation
Indices: 1194130--1196252 Score: 2391
Period size: 948 Copynumber: 2.2 Consensus size: 943
1194120 TTGTCATCAG
* * * * * * *
1194130 AATGTGTTTTTGGTT-CCAACTTTGAAAAGATTAGAGAGACTGTTACGAGAATCGATACTTGTCT
1 AATGTATTTTTGGTTCCCAACTCTAAAAAGA--ATACAGACTGTTACGAAAATCGATACTTGTCC
* * ** * *
1194194 TATTTAAGGGATGAACTTTGA-TTTACGGCAAATAAGG-AAACTAAAAGATTTTCGTGCAAAAGA
64 TATTTAAAGGATGAACTTTGATTTTAAGG-AAAT-AGGCAAAAGAAAAGATTTCCATGCAAAAG-
* ** *
1194257 AAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTT-TTCATTAAATGAA
126 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAAACATAAAATGAA
* * * *
1194321 AGAAGATTATTACTAAAATCCACGTTAGTCTCTTTTGAGGCACGAACATAGACTTTACTAAAATT
191 AGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTTTACTAAAATT
* * * * *
1194386 GGTTGGAAGAAAGCCTTTCTTGCAAAATCAAAGCTCTAGTATCGTGTATCCTATGAGAAGACTAT
256 GGTGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCACCAGTATCATGTATCCTATGAGAAGACTAT
*
1194451 GTTTATAGTACCTCATCCCAAAAAGAATGGGGATTAGTATTAGCATTCATGTTTGTCTTATTTAA
321 GTTTATAGTACCTCATCCCAAAAAGAATGGGGATTAGTAGTAGCATTCATGTTTGTCTTATTTAA
* * * ** * * * *
1194516 GAGATAATCTTTGATTGTATAAAAAATGATGGAAAGAAAATCTTTTGTTGCGACCCTAAAACATC
386 GAAACAAACTTTGATTGTATAAAAAACAATGGAAAGAAAAGCTTTTCTTGAGACACTAAAACATC
* ** * ** ** *
1194581 AATGTCATATATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAGCTTTGAAAAGAACGAAAGACT
451 AATGTCATATATCCCAACAAAAGGAATGCATTTTCAGTTCCCAGCCTTGAAAAGAACGAAAGACT
*
1194646 ATTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
516 ATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
*** **
1194711 GAAAAGATTTTCGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGGGGAGAATGTGTTTAT
581 GAAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTAT
* * * * * *
1194776 AGTGCTTAATCATAAAATGAAAGGAGATCGTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGA
646 AGTGCCTAATCATAAAATGAAA-GAGATCGTACTAAAATCCATGTTTATCTCTCTAGAGGCACGA
* * * * *
1194841 ACATAGACTTTACTAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAAACAAAGCACCAGTTATCGT
710 ACATAGACTTTACTAAATTCGTAGGAAAAAAGCCTTTCTTGCAAAAACAAAGCAACAG-CATCAT
* * * *
1194906 GTATCCTAAGAGAGGTCTATGTTTATAGTGCCTCATCCTAAAAAGATTGGGATTAGTATGAGTAT
774 GTATCCTAAGAGAGGACTATGTTTATAGTGCCTAATCCTAAAAAAATGGGGATTAGTATGAGTAT
* * * * ** *
1194971 TCATGTTTGTCTATTTAGAGATAATATTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTTC
839 TCAGGTTTGCCTATTTAGAGACAATATTTCATTCTAGAAAAAACGA-GGAAAGAAAAGCTTTTTC
* * * *
1195036 TTGTGACCCTAAAACATCAATGTCATGTATCCTAATGAAGGG
903 -TGTGACCCTAAAACATCAATGTCATGTATCCGAATAAAAGA
* * *
1195078 AATGTATTTTTGGTTCCCAACTTTGAAAAGAATAGAGACTGTTACGAAAATCGATACTTGTCCTA
1 AATGTATTTTTGGTTCCCAACTCTAAAAAGAATACAGACTGTTACGAAAATCGATACTTGTCCTA
* * * *
1195143 TTTAAAGGATGAACTTTGATTTTAAGGAAATAGGGAAATGAAAAGATTTTCGTGCAAAAGAAAAT
66 TTTAAAGGATGAACTTTGATTTTAAGGAAATAGGCAAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * *
1195208 CATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAACCATAAAATGAAAGAAA
131 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAAACATAAAATGAAAGAAG
* *
1195273 ATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGTATGAACATAGACCTTTACTAAAATTGGTG
196 ATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGA-CTTTACTAAAATTGGTG
* *
1195338 GGAAAAAAGCCTTTCTTGCAAAATCAAAGCACCAGTATCATGTATCCTAATGAGAGGTCTATGTT
260 GGAAAAAAGCCTTTCTTGCAAAATCAAAGCACCAGTATCATGTATCCT-ATGAGAAGACTATGTT
* *** * *
1195403 TATAGTGCCTCATCTTGAAAAGAATGGGGATTAGTACGT-GTATTCATTTTTGTCTTATTT-AGA
324 TATAGTACCTCATCCCAAAAAGAATGGGGATTAGTA-GTAGCATTCATGTTTGTCTTATTTAAGA
* * * *
1195466 AACAAACTTTGATTTTATTAAAAGCAATGGAAAGAAAAAGCTTTTCTTGAGACACTAAAGCATCA
388 AACAAACTTTGATTGTATAAAAAACAATGGAAAG-AAAAGCTTTTCTTGAGACACTAAAACATCA
* * * * *
1195531 ATGTCATGTATCCCAACAAAAGGAATGCATTTTCATTTCCCAGCCTTGAAAAGAATG-GAGACTG
452 ATGTCATATATCCCAACAAAAGGAATGCATTTTCAGTTCCCAGCCTTGAAAAGAACGAAAGACTA
* * *
1195595 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTGAGGAAAATAGGGCAAAG
517 TTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
1195660 AAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATA
582 AAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATA
*
1195725 GTGCCTACTCATAAAATG-AA-AGATC-TATGCTAAAATCCATGTTTATCTC-CTAGAGGCACG-
647 GTGCCTAATCATAAAATGAAAGAGATCGTA--CTAAAATCCATGTTTATCTCTCTAGAGGCACGA
* * * *
1195785 ACTTGGACTTTAGTAAACTTCGTAGGAACAAAAGCCTCTTTCTTG-GAAAACTAAAGCAACA-CA
710 ACATAGACTTTACTAAA-TTCGTAGGAA-AAAAG-C-CTTTCTTGCAAAAAC-AAAGCAACAGCA
*
1195848 T-ATGTATCCTAACG-GTCA-GACTATGTTTATGGTGCCTAATCCTTAAAAAAAATGGGGATTAG
770 TCATGTATCCTAA-GAG--AGGACTATGTTTATAGTGCCTAATCC-T-AAAAAAATGGGGATTAG
* **
1195910 TTATGAGTATTTAGGTTTGCCTTATTTTAGAGACAA-ACTTTCATTCTAGAAAACAACG-GGGCA
830 -TATGAGTATTCAGGTTTGCC-TA-TTTAGAGACAATA-TTTCATTCTAGAAAA-AACGAGGAAA
* * * *
1195973 -AACAGCTCTTTTC-GTGACACC-AATAGCATCCATGTCGCTGTATCCGAATAAAAGA
890 GAAAAGCT-TTTTCTGTGAC-CCTAA-AACATCAATGTC-ATGTATCCGAATAAAAGA
* * * * * * **
1196028 AATGTGTTTTTGGTTCCCAA-TCCTAAAAAGAATTCAGTCTGTTCCGAGAATCGAT-GTTGTGTT
1 AATGTATTTTTGGTTCCCAACT-CTAAAAAGAATACAGACTGTTACGAAAATCGATACTTGTCCT
* * * * *
1196091 A-TT-CAGGTTGAACTTTTATTTTAAGGAAAAATCGGACAAAAGAAAAAGATTTCCATGCCAAAG
65 ATTTAAAGGATGAACTTTGATTTTAAGG--AAATAGG-CAAAAG-AAAAGATTTCCATGCAAAAG
* * * *
1196154 -AAATCTTC-ATATCA-TTATCTTAATGA-GAGAATGTGTTTATATTGCTTAAACATAAACTGAA
126 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAAACATAAAATGAA
* *
1196215 AGAAGATCTTTACTAGACTCCATCTGTTTG-CTCTTTTG
191 AGAAGATCATTACTAGAATCCA--TGTTTGTCTCTTTTG
1196253 GAAGCACGGA
Statistics
Matches: 1003, Mismatches: 136, Indels: 72
0.83 0.11 0.06
Matches are distributed among these distances:
944 16 0.02
945 32 0.03
946 101 0.10
947 212 0.21
948 310 0.31
949 209 0.21
950 81 0.08
951 39 0.04
952 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (943 bp):
AATGTATTTTTGGTTCCCAACTCTAAAAAGAATACAGACTGTTACGAAAATCGATACTTGTCCTA
TTTAAAGGATGAACTTTGATTTTAAGGAAATAGGCAAAAGAAAAGATTTCCATGCAAAAGAAAAT
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAAACATAAAATGAAAGAAG
ATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACATAGACTTTACTAAAATTGGTGG
GAAAAAAGCCTTTCTTGCAAAATCAAAGCACCAGTATCATGTATCCTATGAGAAGACTATGTTTA
TAGTACCTCATCCCAAAAAGAATGGGGATTAGTAGTAGCATTCATGTTTGTCTTATTTAAGAAAC
AAACTTTGATTGTATAAAAAACAATGGAAAGAAAAGCTTTTCTTGAGACACTAAAACATCAATGT
CATATATCCCAACAAAAGGAATGCATTTTCAGTTCCCAGCCTTGAAAAGAACGAAAGACTATTAC
GAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGC
CTAATCATAAAATGAAAGAGATCGTACTAAAATCCATGTTTATCTCTCTAGAGGCACGAACATAG
ACTTTACTAAATTCGTAGGAAAAAAGCCTTTCTTGCAAAAACAAAGCAACAGCATCATGTATCCT
AAGAGAGGACTATGTTTATAGTGCCTAATCCTAAAAAAATGGGGATTAGTATGAGTATTCAGGTT
TGCCTATTTAGAGACAATATTTCATTCTAGAAAAAACGAGGAAAGAAAAGCTTTTTCTGTGACCC
TAAAACATCAATGTCATGTATCCGAATAAAAGA
Done.