genome.fa.s1787.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1787
Parameters: 2 7 7 80 10 50 1000
Length:  95630

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8722--8818	1	97.0	1	77	0	68	85	8	4	2	0.79
8721--8818	27	3.7	26	77	20	87	84	9	4	2	0.82
8721--8820	43	2.3	44	85	11	136	83	9	6	2	0.89
8721--8811	32	2.8	33	80	6	107	84	8	4	2	0.83
10260--10385	30	4.3	29	80	7	130	30	28	17	23	1.97
10260--10339	29	2.7	30	90	1	126	28	22	21	27	1.99
10319--10413	27	3.3	27	78	12	91	31	34	16	16	1.92
10286--10413	57	2.2	60	83	4	154	28	32	17	21	1.96
10260--10404	30	4.9	30	78	8	118	28	28	18	23	1.98
10325--10413	30	3.0	30	75	19	96	30	34	16	17	1.93
10406--10743	49	7.0	49	83	7	340	26	24	16	32	1.96
10522--10589	21	3.2	21	66	25	61	26	27	17	27	1.98
10498--10633	43	3.2	43	94	0	245	27	25	17	29	1.98
10587--10748	52	3.1	51	79	6	180	24	23	15	36	1.94
10587--11050	49	8.7	55	79	10	379	24	24	15	35	1.95
10757--11116	49	7.3	49	83	7	435	24	24	16	34	1.95
10762--11196	153	2.9	153	80	8	416	23	25	16	34	1.96
10757--11116	104	3.7	99	85	5	448	24	24	16	34	1.95
11012--11102	43	2.1	43	93	0	164	24	25	19	30	1.98
10945--11150	92	2.2	92	75	10	233	22	26	17	33	1.96
11856--11880	13	1.9	13	100	0	50	36	16	16	32	1.90
11943--11967	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11976--12156	52	3.5	52	97	0	335	34	18	17	28	1.94
17468--17492	6	4.2	6	100	0	50	84	0	0	16	0.63
23907--23971	18	3.6	18	81	6	78	47	0	0	52	1.00
28559--28705	74	2.0	76	80	10	169	42	11	4	40	1.62
30000--30034	17	2.1	17	89	5	54	42	0	0	57	0.99
31786--31828	21	2.0	21	90	0	68	32	6	6	53	1.55
32054--32080	13	2.1	13	100	0	54	55	0	7	37	1.28
32143--32190	18	2.6	19	76	6	53	29	8	0	62	1.24
35133--35176	21	2.0	21	87	12	63	59	0	0	40	0.98
36290--36350	2	30.5	2	100	0	122	49	0	0	50	1.00
37597--37638	21	2.0	21	85	4	57	52	2	4	40	1.35
37635--37677	20	2.1	21	86	4	61	65	0	6	27	1.18
38157--38196	20	2.0	20	90	0	62	55	0	12	32	1.38
39612--39642	8	3.9	8	100	0	62	22	0	0	77	0.77
40288--40319	2	16.5	2	93	6	57	50	0	0	50	1.00
41053--41136	27	3.1	27	70	28	72	65	0	0	34	0.93
41053--41133	31	2.5	33	80	11	87	65	0	0	34	0.93
41499--41608	13	8.8	13	76	17	69	40	0	0	59	1.04
41497--41598	31	3.4	31	76	15	99	38	0	0	60	1.03
41491--41604	33	3.5	33	76	12	110	39	0	0	59	1.03
41492--41610	25	5.0	23	74	17	75	39	0	0	59	1.03
41496--41610	6	19.2	6	72	19	64	39	0	0	60	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41709--41801	31	2.9	32	74	9	91	54	0	0	45	0.99
41748--41789	23	2.0	22	86	13	61	57	0	0	42	0.99
45969--46026	27	2.1	27	87	6	82	37	0	0	62	0.96
45980--46013	11	3.2	11	83	8	52	35	0	0	64	0.94
45995--46087	16	5.8	16	81	1	96	39	5	1	53	1.31
46006--46098	32	2.9	32	86	0	114	40	7	2	49	1.43
46047--46100	16	3.4	15	75	10	54	44	9	3	42	1.54
46533--46561	14	2.1	14	93	6	51	41	0	6	51	1.28
46543--46604	19	3.4	19	79	16	60	33	1	1	62	1.14
47297--47348	12	4.4	12	75	2	52	50	0	0	50	1.00
47293--47350	25	2.3	25	85	11	75	46	0	0	53	1.00
47594--47662	14	4.6	14	73	19	68	47	5	0	46	1.26
47722--47771	24	2.1	24	85	10	68	58	0	0	42	0.98
47998--48052	27	2.0	27	89	6	85	43	0	0	56	0.99
48002--48060	27	2.2	27	81	9	75	49	0	0	50	1.00
48382--48411	6	5.0	6	100	0	60	16	16	33	33	1.92
48750--48809	20	3.0	21	75	7	70	61	6	0	31	1.22
56661--56708	15	3.3	15	85	8	64	62	0	4	33	1.14
56942--57000	24	2.5	24	77	2	66	62	5	0	32	1.17
57070--57106	19	1.9	19	88	0	56	29	16	2	51	1.58
58058--58564	101	5.0	100	87	3	685	37	13	16	33	1.87
58058--58564	201	2.5	200	86	4	703	37	13	16	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58832--58862	4	7.8	4	100	0	62	51	0	22	25	1.48
59373--59420	15	3.2	15	79	5	53	33	2	0	64	1.05
59373--59422	10	5.0	10	78	7	57	34	2	0	64	1.05
59373--59422	21	2.5	20	80	6	57	34	2	0	64	1.05
59738--59764	2	13.5	2	100	0	54	48	0	0	51	1.00
60210--60327	36	3.3	36	76	17	138	54	0	2	42	1.20
60998--61363	187	2.0	186	91	2	592	34	10	13	40	1.80
61980--62005	13	2.0	13	100	0	52	38	15	15	30	1.88
62857--62899	17	2.4	19	80	11	54	41	4	2	51	1.35
65633--65699	15	4.3	16	79	11	68	62	0	0	37	0.95
65624--65699	31	2.5	31	82	4	82	61	0	0	38	0.96
65642--65691	25	2.0	25	88	7	75	66	0	0	34	0.92
66439--66476	16	2.4	17	82	13	53	44	0	0	55	0.99
66424--66470	19	2.5	18	78	18	51	42	0	0	57	0.98
66455--66524	30	2.2	33	82	14	94	58	0	0	41	0.98
66768--66821	24	2.2	25	80	9	67	42	3	0	53	1.18
67364--67412	16	3.3	15	80	8	64	59	0	0	40	0.98
67364--67421	30	1.9	31	89	3	91	60	0	0	39	0.97
71242--71288	19	2.4	20	85	3	60	40	0	0	59	0.97
71247--71297	19	2.9	17	76	23	52	45	0	0	54	0.99
71482--71544	26	2.4	25	76	10	63	57	0	1	41	1.08
71503--71556	26	2.0	26	86	10	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71842--71880	19	2.0	20	85	5	53	71	0	0	28	0.86
72016--72051	6	5.8	6	90	3	54	61	0	0	38	0.96
72028--72377	121	2.8	124	83	8	450	45	3	5	45	1.44
71988--72362	121	3.1	119	82	12	431	46	2	5	45	1.41
72756--72780	13	1.9	13	100	0	50	24	0	8	68	1.16
73150--73189	2	20.0	2	89	0	62	50	0	2	47	1.14
73485--73521	14	2.6	15	83	12	51	70	0	0	29	0.88
73476--73526	25	2.0	25	82	14	61	66	1	0	31	1.03
73485--73526	14	3.0	14	80	13	50	66	0	0	33	0.92
73724--73796	38	1.9	38	86	5	103	79	1	13	5	0.97
73808--73868	9	6.6	10	70	22	53	37	0	0	62	0.96
73840--73878	18	2.0	20	85	9	55	51	0	0	48	1.00
74247--74332	31	2.7	32	80	10	86	37	8	4	50	1.53
75948--75996	24	2.0	24	84	7	64	42	4	4	48	1.40
79098--79141	17	2.5	17	77	3	52	45	0	4	50	1.22
79919--79946	8	3.5	8	100	0	56	0	10	0	89	0.49
80719--80748	6	5.0	6	95	0	51	46	0	0	53	1.00
80841--80897	19	3.0	20	84	10	82	52	0	0	47	1.00
84094--84140	24	1.9	25	82	4	60	40	4	31	23	1.74
88576--88659	28	2.9	28	74	10	80	45	5	9	39	1.61
89241--89315	20	3.8	20	78	0	87	34	13	12	40	1.81
89241--89318	40	2.0	39	87	2	111	34	12	12	39	1.82

Tables:   1

The End!