Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1789
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 204392
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:1452 original size:34 final size:32
Alignment explanation
Indices: 1414--1482 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
1404 CGTTACAAGC
1414 CAATGTATCGATACAAT-TTGGTCATGTATCGATA
1 CAATGTATCGATAC-ATCTT-GT-ATGTATCGATA
*
1448 CAATGTATCGATACATCTTGTATGTATTGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
1480 CAA
1 CAA
1483 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 13 0.39
33 4 0.12
34 16 0.48
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:1455 original size:13 final size:13
Alignment explanation
Indices: 1414--1462 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
1404 CGTTACAAGC
1414 CAATGTATCGATA
1 CAATGTATCGATA
*
1427 CAAT-T-T-GGT-
1 CAATGTATCGATA
1436 C-ATGTATCGATA
1 CAATGTATCGATA
1448 CAATGTATCGATA
1 CAATGTATCGATA
1461 CA
1 CA
1463 TCTTGTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 3 0.10
11 3 0.10
12 2 0.07
13 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:6790 original size:27 final size:28
Alignment explanation
Indices: 6709--6962 Score: 109
Period size: 31 Copynumber: 8.2 Consensus size: 28
6699 ACACCTTTTT
* *
6709 CTTTTCAAAGTCCACAACTCCGTGGCATTC
1 CTTTT-AAAGCCCACAACTCCGTGGCA-CC
* *
6739 TTTTTAAAGCCCACAACTCCATGGCACC
1 CTTTTAAAGCCCACAACTCCGTGGCACC
*
6767 CTTTT-AAGCCCACAACACCGTGGCACTC
1 CTTTTAAAGCCCACAACTCCGTGGCAC-C
* * * **
6795 TTTTTCCTTCTAAGTCCACAACTCCGTGGTGCC
1 --CTT--TT-AAAGCCCACAACTCCGTGGCACC
6828 TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 --CTTTT-AAAGCCCACAACTCCGTGGCA--------CC
6867 CTTTTAAAGCCCACAACTCCGTGGCACCTTATTC
1 CTTTTAAAGCCCACAACTCCGTGGCA-C-----C
* * *
6901 CTTTT-AAGTCCACGACTCCGTGGCATCTT
1 CTTTTAAAGCCCACAACTCCGTGGCA-C-C
*
6930 CTTTTCAAAGCCCACCACTCCGTGGCA-C
1 CTTTT-AAAGCCCACAACTCCGTGGCACC
6958 CTTTT
1 CTTTT
6963 CTTTTTAAGT
Statistics
Matches: 177, Mismatches: 25, Indels: 46
0.71 0.10 0.19
Matches are distributed among these distances:
27 19 0.11
28 11 0.06
29 26 0.15
30 6 0.03
31 38 0.21
32 2 0.01
33 24 0.14
34 23 0.13
36 21 0.12
37 5 0.03
39 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (28 bp):
CTTTTAAAGCCCACAACTCCGTGGCACC
Found at i:6856 original size:92 final size:91
Alignment explanation
Indices: 6694--6962 Score: 294
Period size: 100 Copynumber: 2.9 Consensus size: 91
6684 GTCCACGACT
* * * * *
6694 CCGTGACACCTTTTTCTTTTCAAAGTCCACAACTCCGT-GGCATTCTTTTTAAAGCCCACAACTC
1 CCGTGGCACCTTTTTC-CTTCTAAGTCCACAACTCCGTGGGCCTTCTTTTCAAAGCCCACAACTC
*
6758 CATGGCACCCTTTT-AAGCCCACAACA
65 CGTGGCACCCTTTTAAAGCCCACAACA
6784 CCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGTGCCTTCTTTTCAAAGCCCACAACT
1 CCGTGGCAC-CTTTTTCCTTCTAAGTCCACAACTCCGTGG-GCCTTCTTTTCAAAGCCCACAACT
*
6849 CCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACT
64 CCGTGGCA--------CCCTTTTAAAGCCCACAACA
* * * *
6885 CCGTGGCACCTTATTCCTTTTAAGTCCACGACTCCGT-GGCATCTTCTTTTCAAAGCCCACCACT
1 CCGTGGCACCTTTTTCCTTCTAAGTCCACAACTCCGTGGGC--CTTCTTTTCAAAGCCCACAACT
6949 CCGTGGCA-CCTTTT
64 CCGTGGCACCCTTTT
6963 CTTTTTAAGT
Statistics
Matches: 154, Mismatches: 11, Indels: 27
0.80 0.06 0.14
Matches are distributed among these distances:
90 27 0.18
91 14 0.09
92 29 0.19
98 2 0.01
99 1 0.01
100 61 0.40
101 20 0.13
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.31
Consensus pattern (91 bp):
CCGTGGCACCTTTTTCCTTCTAAGTCCACAACTCCGTGGGCCTTCTTTTCAAAGCCCACAACTCC
GTGGCACCCTTTTAAAGCCCACAACA
Found at i:6924 original size:33 final size:33
Alignment explanation
Indices: 6516--7168 Score: 513
Period size: 34 Copynumber: 19.8 Consensus size: 33
6506 GGGGACGAAT
*
6516 TCCACGACTCCGTGGCACTCTTTTTCCCTTTTTAAG
1 TCCACAACTCCGTGGCAC-CTTTTT-CC-TTTTAAG
* * *
6552 CCCACAACTCCATGGCACTCTTTTTCCTTCTAAG
1 TCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAG
6586 TCCACAAC-CTCGTGGCACC-TTTT-CTTTTAAG
1 TCCACAACTC-CGTGGCACCTTTTTCCTTTTAAG
* *
6617 TCCACGACTCCGTGGCACCTTTTT-CTTTCCAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTT--TAAG
* * *
6651 TCCACGACTCCGTGGTACCTTTTT-CTTTCCAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTT--TAAG
* *
6685 TCCACGACTCCGTGACACCTTTTT-CTTTTCAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTT--AAG
* *
6719 TCCACAACTCCGTGGCA--TTCTT--TTTAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
* *
6748 CCCACAACTCCATGGCA-C-----CCTTTTAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
* * *
6775 CCCACAACACCGTGGCACTCTTTTTCCTTCTAAG
1 TCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAG
** * **
6809 TCCACAACTCCGTGGTGCCTTCTT--TTCAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
*
6840 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAG
1 TCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAG
* *
6876 CCCACAACTCCGTGGCACCTTATTCCTTTTAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
* * * **
6909 TCCACGACTCCGTGGCATCTTCTT--TTCAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
* * *
6940 CCCACCACTCCGTGGCACC-TTTTCTTTTTAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
* * *
6972 TCCACGACCCCGTGGCACCTTGTT-CTTTTCAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTT--AAG
* *
7006 CCCACAACTCCATGGCACTCTTTGTTCCTTTTAAG
1 TCCACAACTCCGTGGCAC-CTTT-TTCCTTTTAAG
* * * *
7041 TCCACGACCCCGTGGCATCTTGTTCCTTTTAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
*
7074 TCCACAACTCCGTGGCACCTTTTTCTTTTTAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTT-AAG
* * *
7108 CCCACAACTCCGTGGCAGCTTTTTCTTTTTAAAG
1 TCCACAACTCCGTGGCACCTTTTTCCTTTT-AAG
* * *
7142 CCCACAACTCTGTGGCACTTTTTTCCT
1 TCCACAACTCCGTGGCACCTTTTTCCT
7169 CTCAAAGCCC
Statistics
Matches: 511, Mismatches: 75, Indels: 64
0.79 0.12 0.10
Matches are distributed among these distances:
27 21 0.04
29 19 0.04
30 3 0.01
31 68 0.13
32 47 0.09
33 69 0.14
34 206 0.40
35 28 0.05
36 45 0.09
37 5 0.01
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.33
Consensus pattern (33 bp):
TCCACAACTCCGTGGCACCTTTTTCCTTTTAAG
Found at i:7214 original size:33 final size:33
Alignment explanation
Indices: 7167--7364 Score: 305
Period size: 32 Copynumber: 6.1 Consensus size: 33
7157 CACTTTTTTC
7167 CTCTCAAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTCT-AAAGCCCACACAAGTCGGTGGCAACCCTT
7201 CTCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
7233 CTTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
1 C-TCTAAAGCCCACACAAGTCGGTGGCAACCCTT
* *
7267 C-CCAAAGCCCACACAAGTCGGTGGCAACCCCT
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
*
7299 C-CCAAAGCCCACACAAGTCGGTGGCAACCC-T
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
* *
7330 CTCTAAAGCCCACATAAGTCGATGGCAACCCTT
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
7363 CT
1 CT
7365 AAGCCCAATA
Statistics
Matches: 155, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
31 2 0.01
32 90 0.58
33 54 0.35
34 9 0.06
ACGTcount: A:0.28, C:0.38, G:0.18, T:0.17
Consensus pattern (33 bp):
CTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:7471 original size:43 final size:43
Alignment explanation
Indices: 7410--7865 Score: 500
Period size: 43 Copynumber: 10.1 Consensus size: 43
7400 GCACCTTCTT
**
7410 CTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
7453 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
7500 TTCTTTGAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
7545 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C
*
7589 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
7634 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG---CA-C
* * *
7681 ATCTTTAAGTCCAATGTAGCTGGCCTTTAATCAGCACATTGGCAA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
7726 CTCCT-AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTC
1 CT-TTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
7773 ATCTTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC
1 --C-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
7819 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
7862 CTTT
1 CTTT
7866 GTCATCTTTA
Statistics
Matches: 354, Mismatches: 35, Indels: 48
0.81 0.08 0.11
Matches are distributed among these distances:
43 191 0.54
44 3 0.01
45 2 0.01
46 45 0.13
47 2 0.01
49 77 0.22
50 34 0.10
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:7526 original size:92 final size:92
Alignment explanation
Indices: 7359--7916 Score: 872
Period size: 92 Copynumber: 6.0 Consensus size: 92
7349 CGATGGCAAC
* * *
7359 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
7424 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
7452 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTGAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
7517 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
7544 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T--TCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
7606 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
7633 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
7698 AGCTGGCCTTTAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
7725 ACTCCT-AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAAT
1 CCT-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTCCAAT
* *
7789 GTCGCTAGCCTTGAATCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
*
7818 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGTCCAA
* *
7883 TGTCGCTGGCCTTGAATCAGCATATTGGCA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
7913 CCTT
1 CCTT
7917 CATCATCTTT
Statistics
Matches: 435, Mismatches: 21, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
89 86 0.20
90 1 0.00
91 1 0.00
92 218 0.50
93 82 0.19
95 42 0.10
96 5 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:7676 original size:181 final size:182
Alignment explanation
Indices: 7359--7916 Score: 868
Period size: 181 Copynumber: 3.0 Consensus size: 182
7349 CGATGGCAAC
* *
7359 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--CTTCTTTAAGTCCAATG
*
7424 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
63 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
* *
7489 TTGGCACCTTCTTCTTTGAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
128 TTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
7544 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTCTTTAAGTCCAATGTAG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTCTTTAAGTCCAATGTAG
7608 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
* *
7673 GCACCATCATCTTTAAGTCCAATGTAGCTGGCCTTTAATCAGCACATTGGCA
131 GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * *
7725 ACTCCT-AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAAT
1 CCT-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCT--TC-TTTAAGTCCAAT
* *
7789 GTCGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
62 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
* * *
7854 ATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
127 ATTGGCACC--T-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
7913 CCTT
1 CCTT
7917 CATCATCTTT
Statistics
Matches: 344, Mismatches: 21, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
181 169 0.49
182 4 0.01
183 1 0.00
184 39 0.11
185 86 0.25
188 45 0.13
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (182 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
Found at i:7897 original size:52 final size:52
Alignment explanation
Indices: 7819--8023 Score: 221
Period size: 52 Copynumber: 3.9 Consensus size: 52
7809 ACATTGGCAC
* * * *
7819 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCAT
* *
7871 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCAT
** * * * ** *
7923 CTTTAAAACCTAATGTTGTTGGCCTTGAATTAGCACATTGGCATTTTTCTCAT
1 CTTTAAGTCC-AATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCAT
* * * * *
7976 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
8024 TTCTCATCTT
Statistics
Matches: 125, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
52 82 0.66
53 43 0.34
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCAT
Found at i:8198 original size:10 final size:10
Alignment explanation
Indices: 8183--8218 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
8173 TCCTTTCCAA
8183 AATCTACACC
1 AATCTACACC
8193 AATCTACACC
1 AATCTACACC
*
8203 AACCTACACC
1 AATCTACACC
*
8213 TATCTA
1 AATCTA
8219 AAGAGGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (10 bp):
AATCTACACC
Found at i:8622 original size:13 final size:13
Alignment explanation
Indices: 8604--8628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8594 CATAAAGTGT
8604 TGTATCGATACAA
1 TGTATCGATACAA
8617 TGTATCGATACA
1 TGTATCGATACA
8629 TATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:8644 original size:32 final size:33
Alignment explanation
Indices: 8584--8649 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
8574 TTCAACGATT
8584 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
** *
8617 TGTATCGATACAT-ATTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
8649 T
1 T
8650 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:8708 original size:13 final size:13
Alignment explanation
Indices: 8690--8714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8680 ATTACTCAAA
8690 TGTATCGATACAT
1 TGTATCGATACAT
8703 TGTATCGATACA
1 TGTATCGATACA
8715 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:8766 original size:52 final size:53
Alignment explanation
Indices: 8703--8844 Score: 200
Period size: 52 Copynumber: 2.7 Consensus size: 53
8693 ATCGATACAT
*** *
8703 TGTATCGATACACTGAT-CTTTGTATTGATACATGCAGGCAAATTTGCCCAAA
1 TGTATCGATACACTGATAAAATGTATCGATACATGCAGGCAAATTTGCCCAAA
* *
8755 TGTATCGATACA-TTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTGATAAAATGTATCGATACATGCAGGCAAATTTGCCCAAA
*
8807 TGTATCGATACACT-ATTAAATGTATCGATACATGCAGG
1 TGTATCGATACACTGATAAAATGTATCGATACATGCAGG
8845 AACTTTTCAT
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 3 0.04
52 77 0.95
53 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (53 bp):
TGTATCGATACACTGATAAAATGTATCGATACATGCAGGCAAATTTGCCCAAA
Found at i:18530 original size:22 final size:22
Alignment explanation
Indices: 18504--18546 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
18494 ACAAGGACAT
18504 GAATGCCCATATGAACAAAAAC
1 GAATGCCCATATGAACAAAAAC
18526 GAATGCCCATATGAACAAAAA
1 GAATGCCCATATGAACAAAAA
18547 TGATCCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.21, G:0.14, T:0.14
Consensus pattern (22 bp):
GAATGCCCATATGAACAAAAAC
Found at i:19752 original size:30 final size:31
Alignment explanation
Indices: 19715--19799 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 31
19705 CAAATACCTT
19715 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* *
19746 -TCAAAGTCCACGACTTAGTGGCATTTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* * * *
19776 TTTAAAGCCCACAACTCTGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
19800 CACTTTTTCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
30 28 0.61
31 18 0.39
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (31 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTGTC
Found at i:19891 original size:34 final size:35
Alignment explanation
Indices: 19776--20243 Score: 487
Period size: 34 Copynumber: 13.9 Consensus size: 35
19766 GCATTTTTTC
* *
19776 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
**
19811 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTT
*
19848 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
19882 TTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTT
*
19919 GTTAAAGCCCACAACTCCGTGGCAC-C---TTCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
19950 TTCAAAGCCCACAACTCCGTGGCAC-C-----C-T
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * * *
19978 TTT-AAGTCCACGACTACGTGGCACTC-TTTTC-C
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
20010 TTTAAAGCCCACAACTACGTGGCACTC-TTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
20044 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
20078 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
20112 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * *
20146 TCT-AAGCCCACAACTTCGTGGCACTCTTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACTC-TTTTT-CTT
*
20182 TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
20216 TTT-AAGTCCACAACTTCGTGGCA-TCTTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTT
20244 CACCCTTTCT
Statistics
Matches: 387, Mismatches: 29, Indels: 36
0.86 0.06 0.08
Matches are distributed among these distances:
27 18 0.05
28 4 0.01
29 1 0.00
31 27 0.07
32 4 0.01
33 71 0.18
34 133 0.34
35 45 0.12
36 13 0.03
37 71 0.18
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (35 bp):
TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
Found at i:20155 original size:195 final size:198
Alignment explanation
Indices: 19811--20175 Score: 546
Period size: 195 Copynumber: 1.9 Consensus size: 198
19801 ACTTTTTCTT
**
19811 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCC-TTTCAAAGCCCACAACTCCGTGGCACCTT
* * *
19876 TTTCTTTTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGG
65 TTTCCTTCTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGCTAAAGCCCACAACTCCGTGG
19941 CACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACGTGGCACTCTT
130 CACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACGTGGCACTCTT
20006 TTCC
195 TTCC
*
20010 TTTAAAGCCCACAACTACGTGGCACTC-TTTT-CC-TTCTAAGCCCACAACTCCGTGGCACTCTT
1 TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCAC-CTT
20072 TTTCCTTCTA-AGCCCACAACTCCGTGGCACTCTTTTT-CCTT-CT-AAGCCCACAACTCCGTGG
65 TTTCCTTCTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGCTAAAGCCCACAACTCCGTGG
* * * *
20133 CACTCTTTTTCCTTCTAAGCCCACAACTTCGTGGCACTCTTTT
130 CAC-CTTCTT--TTCAAAGCCCACAACTCCGTGGCACCCTTTT
20176 TTCCCTTTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
192 21 0.14
193 6 0.04
194 4 0.03
195 79 0.52
196 11 0.07
197 2 0.01
198 4 0.03
199 25 0.16
ACGTcount: A:0.20, C:0.36, G:0.13, T:0.32
Consensus pattern (198 bp):
TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCACCTTT
TTCCTTCTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGCTAAAGCCCACAACTCCGTGGC
ACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACGTGGCACTCTTT
TCC
Found at i:20288 original size:33 final size:33
Alignment explanation
Indices: 20247--20482 Score: 329
Period size: 33 Copynumber: 7.2 Consensus size: 33
20237 CATCTTTCAC
20247 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
20279 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
20312 CCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
20345 CCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATC
1 CCTT-CTCTAAAGCCCACACAAGTCGGTGGCAA-A
* *
20380 CCTTC-CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
20412 CCTTC-CCAAAGCCGACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
20443 CCATTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
20477 CCTTCT
1 CCTTCT
20483 AAGCCCAATA
Statistics
Matches: 185, Mismatches: 11, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
31 3 0.02
32 39 0.21
33 104 0.56
34 35 0.19
35 4 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:20337 original size:67 final size:67
Alignment explanation
Indices: 20245--20482 Score: 360
Period size: 67 Copynumber: 3.6 Consensus size: 67
20235 GGCATCTTTC
*
20245 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
20309 AA
66 AA
20311 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCTTCCTCTAAAGCCCACACAAGTTGGTGG
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTT-CTCTAAAGCCCACACAAGTTGGTGG
20375 CAA
65 CAA
* * * * *
20378 TCCCTTC-CCAAAGCCCACACAAGTCGGTGGCAACCCTTC-CCAAAGCCGACACAAGTTGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
20441 -A
66 AA
* *
20442 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCT
20483 AAGCCCAATA
Statistics
Matches: 158, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
64 6 0.04
65 53 0.34
66 36 0.23
67 63 0.40
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.18
Consensus pattern (67 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
AA
Found at i:20540 original size:49 final size:49
Alignment explanation
Indices: 20482--21097 Score: 810
Period size: 49 Copynumber: 12.7 Consensus size: 49
20472 GCAACCCTTC
* * *
20482 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
20531 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
20579 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
20622 TAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTTTGCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* * * *
20674 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
20723 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
20772 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
20821 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
20870 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
20919 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
**
20967 TAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
21010 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTT
* *
21062 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
21098 ACATCCTTTT
Statistics
Matches: 499, Mismatches: 50, Indels: 33
0.86 0.09 0.06
Matches are distributed among these distances:
43 78 0.16
45 2 0.00
48 87 0.17
49 252 0.51
50 4 0.01
52 76 0.15
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:21218 original size:67 final size:68
Alignment explanation
Indices: 21110--21236 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 68
21100 ATCCTTTTTC
* * * *
21110 TCATCTTTAAGCCTAATATCATTGGCCGTGCATCAACATATTAGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTTTCTCA
21174 TCT
66 TCT
* * * *
21177 TCATCTTTAAGTCC-AATATTACTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTT
21237 AAAACCCAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
67 44 0.88
68 6 0.12
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTTTCTCA
TCT
Found at i:22002 original size:33 final size:33
Alignment explanation
Indices: 21965--22031 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
21955 TTCAACGATT
21965 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
21998 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
22031 T
1 T
22032 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:22003 original size:13 final size:13
Alignment explanation
Indices: 21985--22009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21975 CATAAAATGT
21985 TGTATCGATACAA
1 TGTATCGATACAA
21998 TGTATCGATACA
1 TGTATCGATACA
22010 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:22090 original size:13 final size:13
Alignment explanation
Indices: 22072--22096 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22062 ATTACTCAAA
22072 TGTATCGATACAT
1 TGTATCGATACAT
22085 TGTATCGATACA
1 TGTATCGATACA
22097 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:22235 original size:52 final size:52
Alignment explanation
Indices: 22105--22235 Score: 199
Period size: 52 Copynumber: 2.5 Consensus size: 52
22095 CACTGATCTT
* * * *
22105 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAAATGTATCGATACACTATAAAA
*
22157 TGTATCGATACATGCAGGCAAATTTTCCCAAATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAAATGTATCGATACACTATAAAA
* *
22209 TGTATCGATACATGCAAGCAACTTTTC
1 TGTATCGATACATGCAGGCAAATTTTC
22236 ATATTTCGGG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTTCCCAAATGTATCGATACACTATAAAA
Found at i:27173 original size:13 final size:13
Alignment explanation
Indices: 27155--27179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27145 CAATTTGGTC
27155 ATGTATCGATACT
1 ATGTATCGATACT
27168 ATGTATCGATAC
1 ATGTATCGATAC
27180 AAACAGTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACT
Found at i:36234 original size:79 final size:78
Alignment explanation
Indices: 36101--36733 Score: 542
Period size: 79 Copynumber: 8.0 Consensus size: 78
36091 GGGAGCTTCA
* * ** * *** *
36101 TCCTGGTCAACTTTATTTCATTGGTTCATATGGTTTTGTC-CTAGCTAGTGCCTTTCTTTTGTTG
1 TCCTGGTCAACTTTCTTT-ATTGGTTCGTATGGTTTCATCTC-AGCCAACACCTTTCCTTTGTTG
*
36165 ACTCGTATGGTTTCC
64 ACTCGTATGGTTTCG
* **
36180 TCCTGGTCAACTTTCTTTCATTGGTTTGTATGGTTTTGTCTCAGCCAACACCTTTCCTTTGTTGA
1 TCCTGGTCAACTTTCTTT-ATTGGTTCGTATGGTTTCATCTCAGCCAACACCTTTCCTTTGTTGA
*
36245 CTTGTATGG-TTCG
65 CTCGTATGGTTTCG
** * * * * * **
36258 TCCTAATCAACTTCCCTTTATTGGTTCGTATAGTTTCGTCTCGGCCAACATCTTTTATTTGTTGA
1 TCCTGGTCAACTT-TCTTTATTGGTTCGTATGGTTTCATCTCAGCCAACACCTTTCCTTTGTTGA
*
36323 CTCGTATGGTTTCA
65 CTCGTATGGTTTCG
* * * * *
36337 TCCCGATCAACTTTCTTTCATTGGTTCGTATGGTTTCGTCTCGGCCAACACCTTTCTTTTGTTGA
1 TCCTGGTCAACTTTCTTT-ATTGGTTCGTATGGTTTCATCTCAGCCAACACCTTTCCTTTGTTGA
* **
36402 TTCGTATGGTTTTA
65 CTCGTATGGTTTCG
** * * * * * *
36416 TCCCAGTCAACTTTATTTCGTTGGTTCGTATGGTTTCATCT-TGACCAACACCTTT-TTTTTTTA
1 TCCTGGTCAACTTTCTTT-ATTGGTTCGTATGGTTTCATCTCAG-CCAACACCTTTCCTTTGTTG
36479 ACTCGTATGGTTTCG
64 ACTCGTATGGTTTCG
** * * * *
36494 TCCTAATCAACTTTCCTTTGTTGGTTCATATGGCTTCATC-CTGGCCAACACCTTTCCTTTGTTG
1 TCCTGGTCAACTTT-CTTTATTGGTTCGTATGGTTTCATCTC-AGCCAACACCTTTCCTTTGTTG
*
36558 ACTCATATGGTTTCG
64 ACTCGTATGGTTTCG
* * * * *
36573 TCCTGGTCACCTTTTTCTTTGTTGGTTCATATGGTTTCATCT-TGACCAATACCTTTCCTTTGTT
1 TCCTGGTCAAC--TTTCTTTATTGGTTCGTATGGTTTCATCTCAG-CCAACACCTTTCCTTTGTT
36637 GACTCGTATGGTTTCG
63 GACTCGTATGGTTTCG
* * * * * * * *
36653 TCTTGGTCAACTCTCCTTTGTTAGTTTGTATAGTTTCATC-CTAGTCGACACCTTTCCTTTGTTG
1 TCCTGGTCAACT-TTCTTTATTGGTTCGTATGGTTTCATCTC-AGCCAACACCTTTCCTTTGTTG
*
36717 ACTCATATGGTTTCG
64 ACTCGTATGGTTTCG
36732 TC
1 TC
36734 TCGATCAACC
Statistics
Matches: 467, Mismatches: 71, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
78 127 0.27
79 269 0.58
80 68 0.15
81 3 0.01
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.46
Consensus pattern (78 bp):
TCCTGGTCAACTTTCTTTATTGGTTCGTATGGTTTCATCTCAGCCAACACCTTTCCTTTGTTGAC
TCGTATGGTTTCG
Found at i:36398 original size:157 final size:156
Alignment explanation
Indices: 36151--36733 Score: 584
Period size: 157 Copynumber: 3.7 Consensus size: 156
36141 CTAGCTAGTG
* * *
36151 CCTTTCTTTTGTTGACTCGTATGGTTTCCTCCTGGTCAACTTTCTTTCATTGGTTTGTATGGTTT
1 CCTTT-TTTTGTTGACTCGTATGGTTTCATCCTGATCAACTTTCTTTCATTGGTTCGTATGGTTT
* * * * *
36216 TGTCTCAGCCAACACCTTTCCTTTGTTGACTTGTATGG-TTCGTCCTAATCAACTTCCCTTTATT
65 CGTCTCGGCCAACACCTTTCCTTTGTTGACTTGTATGGTTTCGTCCTAGTCAACTT-TCTTTGTT
* * * *
36280 GGTTCGTATAGTTTCGTCTCGGCCAACA
129 GGTTCGTATGGTTTCATCTTGACCAACA
* *
36308 TCTTTTATTTGTTGACTCGTATGGTTTCATCCCGATCAACTTTCTTTCATTGGTTCGTATGGTTT
1 CCTTTT-TTTGTTGACTCGTATGGTTTCATCCTGATCAACTTTCTTTCATTGGTTCGTATGGTTT
* ** * *
36373 CGTCTCGGCCAACACCTTTCTTTTGTTGA-TTCGTATGGTTTTATCCCAGTCAACTTTATTTCGT
65 CGTCTCGGCCAACACCTTTCCTTTGTTGACTT-GTATGGTTTCGTCCTAGTCAACTTTCTTT-GT
36437 TGGTTCGTATGGTTTCATCTTGACCAACA
128 TGGTTCGTATGGTTTCATCTTGACCAACA
* * * * * * *
36466 CCTTTTTTTTTTAACTCGTATGGTTTCGTCCTAATCAACTTTCCTTT-GTTGGTTCATATGGCTT
1 CCTTTTTTTGTTGACTCGTATGGTTTCATCCTGATCAACTTT-CTTTCATTGGTTCGTATGGTTT
* ** * *
36530 CATC-CTGGCCAACACCTTTCCTTTGTTGACTCATATGGTTTCGTCCTGGTCACCTTTTTCTTTG
65 CGTCTC-GGCCAACACCTTTCCTTTGTTGACTTGTATGGTTTCGTCCTAGTCAAC--TTTCTTTG
* *
36594 TTGGTTCATATGGTTTCATCTTGACCAATA
127 TTGGTTCGTATGGTTTCATCTTGACCAACA
* * * * * * * * *
36624 CCTTTCCTTTGTTGACTCGTATGGTTTCGTCTTGGTCAACTCTCCTTT-GTTAGTTTGTATAGTT
1 CCTTT-TTTTGTTGACTCGTATGGTTTCATCCTGATCAACT-TTCTTTCATTGGTTCGTATGGTT
* * * * **
36688 TCATC-CTAGTCGACACCTTTCCTTTGTTGACTCATATGGTTTCGTC
64 TCGTCTC-GGCCAACACCTTTCCTTTGTTGACTTGTATGGTTTCGTC
36734 TCGATCAACC
Statistics
Matches: 360, Mismatches: 55, Indels: 20
0.83 0.13 0.05
Matches are distributed among these distances:
156 4 0.01
157 179 0.50
158 83 0.23
159 93 0.26
160 1 0.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.46
Consensus pattern (156 bp):
CCTTTTTTTGTTGACTCGTATGGTTTCATCCTGATCAACTTTCTTTCATTGGTTCGTATGGTTTC
GTCTCGGCCAACACCTTTCCTTTGTTGACTTGTATGGTTTCGTCCTAGTCAACTTTCTTTGTTGG
TTCGTATGGTTTCATCTTGACCAACA
Found at i:36520 original size:236 final size:236
Alignment explanation
Indices: 36097--36651 Score: 643
Period size: 236 Copynumber: 2.3 Consensus size: 236
36087 CAGAGGGAGC
* * * * * *
36097 TTCATCCTGGTCAACTTTATTTCATTGGTTCATATGGTTTTGTC-CTAGCTAGTGCCTTTCTTTT
1 TTCATCCTGGTCAACTTTCTTTCATTGGTTCATATGGTTTCGTCTC-GGCCAATACCTTTCTTTT
* ** * * **
36161 GTTGACTCGTATGGTTTCCTCCTGGTCAACTTTCTTTCATTGGTTTGTATGGTTTTGTCTCAGCC
65 GTTGACTCGTATGGTTTCATCCCAGTCAACTTTATTTCATTGGTTCGTATGGTTTCATCTCAGCC
* * *
36226 AACACCTTTCCTTTGTTGACTTGTATGGTTCGTCCTAATCAACTTCCCTTTATTGGTTCGTATAG
130 AACACCTTTCCTTTGTTAACTCGTATGGTTCGTCCTAATCAACTTCCCTTTATTGGTTCATATAG
* * * * *
36291 TTTCGT-CTCGGCCAACATCTTTTATTTGTTGACTCGTATGGT
195 CTTCATCCT-GGCCAACACCTTTCATTTGTTGACTCATATGGT
* * * *
36333 TTCATCCCGATCAACTTTCTTTCATTGGTTCGTATGGTTTCGTCTCGGCCAACACCTTTCTTTTG
1 TTCATCCTGGTCAACTTTCTTTCATTGGTTCATATGGTTTCGTCTCGGCCAATACCTTTCTTTTG
* * * *
36398 TTGATTCGTATGGTTTTATCCCAGTCAACTTTATTTCGTTGGTTCGTATGGTTTCATCT-TGACC
66 TTGACTCGTATGGTTTCATCCCAGTCAACTTTATTTCATTGGTTCGTATGGTTTCATCTCAG-CC
* * * * *
36462 AACACCTTT-TTTTTTTAACTCGTATGGTTTCGTCCTAATCAACTTTCCTTTGTTGGTTCATATG
130 AACACCTTTCCTTTGTTAACTCGTATGG-TTCGTCCTAATCAACTTCCCTTTATTGGTTCATATA
*
36526 GCTTCATCCTGGCCAACACCTTTCCTTTGTTGACTCATATGGT
194 GCTTCATCCTGGCCAACACCTTTCATTTGTTGACTCATATGGT
* * * * * * *
36569 TTCGTCCTGGTCACCTTTTTCTTT-GTTGGTTCATATGGTTTCATCTTGACCAATACCTTTCCTT
1 TTCATCCTGGTCAAC--TTTCTTTCATTGGTTCATATGGTTTCGTCTCGGCCAATACCTTTCTTT
36633 TGTTGACTCGTATGGTTTC
64 TGTTGACTCGTATGGTTTC
36652 GTCTTGGTCA
Statistics
Matches: 265, Mismatches: 48, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
235 15 0.06
236 190 0.72
237 53 0.20
238 7 0.03
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.46
Consensus pattern (236 bp):
TTCATCCTGGTCAACTTTCTTTCATTGGTTCATATGGTTTCGTCTCGGCCAATACCTTTCTTTTG
TTGACTCGTATGGTTTCATCCCAGTCAACTTTATTTCATTGGTTCGTATGGTTTCATCTCAGCCA
ACACCTTTCCTTTGTTAACTCGTATGGTTCGTCCTAATCAACTTCCCTTTATTGGTTCATATAGC
TTCATCCTGGCCAACACCTTTCATTTGTTGACTCATATGGT
Found at i:36657 original size:41 final size:41
Alignment explanation
Indices: 36151--36733 Score: 222
Period size: 41 Copynumber: 14.8 Consensus size: 41
36141 CTAGCTAGTG
* * * **
36151 CCTTTCTTTTGTTGACTCGTATGGTTTCCTCCTGGTC-A-A
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * * * *
36190 -CTTT-CTTTCATTGGTTTGTATGGTTTTGT-CTCAGCCAACA
1 CCTTTCCTTT-GTTGATTCGTATGGTTTCGTCCTGA-CCAACA
*
36230 CCTTTCCTTTGTTGACTT-GTATGG-TTCGTCCT-A--ATCA
1 CCTTTCCTTTGTTGA-TTCGTATGGTTTCGTCCTGACCAACA
* * * * * *
36267 ACTTCCCTTTATTGGTTCGTATAGTTTCGT-CTCGGCCAACA
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCT-GACCAACA
* ** * * * *
36308 TCTTTTATTTGTTGACTCGTATGGTTTCATCCCGATC-A-A
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * *
36347 -CTTT-CTTTCATTGGTTCGTATGGTTTCGT-CTCGGCCAACA
1 CCTTTCCTTT-GTTGATTCGTATGGTTTCGTCCT-GACCAACA
* * * *
36387 CCTTTCTTTTGTTGATTCGTATGGTTT--T-AT-CCCAGTCA
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCA-ACA
* * * * *
36425 ACTTT-ATTTCGTTGGTTCGTATGGTTTCATCTTGACCAACA
1 CCTTTCCTTT-GTTGATTCGTATGGTTTCGTCCTGACCAACA
* * * * *
36466 CCTTT-TTTTTTTAACTCGTATGGTTTCGTCCT-A--ATCA
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * * * * *
36503 ACTTTCCTTTGTTGGTTCATATGGCTTCATCCTGGCCAACA
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * **
36544 CCTTTCCTTTGTTGACTCATATGGTTTCGTCCTGGTC-AC-
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * * * * * *
36583 CTTTTTCTTTGTTGGTTCATATGGTTTCATCTTGACCAATA
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * **
36624 CCTTTCCTTTGTTGACTCGTATGGTTTCGTCTTGGTC-A-A
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
* * * * * *
36663 -CTCTCCTTTGTT-AGTTTGTATAGTTTCATCCT-AGTCGACA
1 CCTTTCCTTTGTTGA-TTCGTATGGTTTCGTCCTGA-CCAACA
* *
36703 CCTTTCCTTTGTTGACTCATATGGTTTCGTC
1 CCTTTCCTTTGTTGATTCGTATGGTTTCGTC
36734 TCGATCAACC
Statistics
Matches: 396, Mismatches: 109, Indels: 76
0.68 0.19 0.13
Matches are distributed among these distances:
36 2 0.01
37 44 0.11
38 113 0.29
39 37 0.09
40 31 0.08
41 155 0.39
42 14 0.04
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.46
Consensus pattern (41 bp):
CCTTTCCTTTGTTGATTCGTATGGTTTCGTCCTGACCAACA
Found at i:37407 original size:8 final size:8
Alignment explanation
Indices: 37390--37467 Score: 59
Period size: 8 Copynumber: 9.2 Consensus size: 8
37380 TGTTTAATAT
37390 ATAATAAA
1 ATAATAAA
*
37398 ATAATTAA
1 ATAATAAA
*
37406 ATAAAAAA
1 ATAATAAA
37414 ATAATATATA
1 ATAATA-A-A
37424 TATAAT-AA
1 -ATAATAAA
*
37432 AGAATAAA
1 ATAATAAA
37440 TATAATAATA
1 -ATAATAA-A
*
37450 ATAATAAC
1 ATAATAAA
*
37458 ATAAAAAA
1 ATAATAAA
37466 AT
1 AT
37468 GTCATCAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
7 4 0.07
8 29 0.53
9 15 0.27
10 2 0.04
11 5 0.09
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (8 bp):
ATAATAAA
Found at i:37440 original size:33 final size:35
Alignment explanation
Indices: 37386--37452 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 35
37376 GGTTTGTTTA
*
37386 ATATATAATAAAATAATTAAATAAAAAAATAATAT
1 ATATATAATAAAAGAATTAAATAAAAAAATAATAT
* *
37421 ATATATAAT-AAAGAA-TAAATATAATAATAATA
1 ATATATAATAAAAGAATTAAATAAAAAAATAATA
37453 ATAACATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 15 0.52
34 5 0.17
35 9 0.31
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.31
Consensus pattern (35 bp):
ATATATAATAAAAGAATTAAATAAAAAAATAATAT
Found at i:37850 original size:18 final size:15
Alignment explanation
Indices: 37812--37846 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
37802 GCAGCAGTAG
37812 CAACACTAGCAGCAA
1 CAACACTAGCAGCAA
37827 CAACACTAGCAGCAA
1 CAACACTAGCAGCAA
37842 CAACA
1 CAACA
37847 ACACCAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.34, G:0.11, T:0.06
Consensus pattern (15 bp):
CAACACTAGCAGCAA
Found at i:37858 original size:18 final size:18
Alignment explanation
Indices: 37818--37861 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
37808 GTAGCAACAC
* * *
37818 TAGCAGCAACAACACTAG
1 TAGCAACAACAACACCAA
*
37836 CAGCAACAACAACACCAA
1 TAGCAACAACAACACCAA
37854 TAGCAACA
1 TAGCAACA
37862 GTAAGCAATG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.32, G:0.11, T:0.07
Consensus pattern (18 bp):
TAGCAACAACAACACCAA
Found at i:41279 original size:28 final size:28
Alignment explanation
Indices: 41239--41302 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
41229 TCAGAAATAC
**
41239 TCCAACCCCATCATTTCTGAGGGGATAA
1 TCCAACCCCATCATTTCCAAGGGGATAA
*
41267 TCCAACCCCATCATTTCCAAGGGGATAC
1 TCCAACCCCATCATTTCCAAGGGGATAA
*
41295 TCTAACCC
1 TCCAACCC
41303 TGTTTTTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.23
Consensus pattern (28 bp):
TCCAACCCCATCATTTCCAAGGGGATAA
Found at i:41447 original size:78 final size:80
Alignment explanation
Indices: 41259--41667 Score: 397
Period size: 78 Copynumber: 5.2 Consensus size: 80
41249 TCATTTCTGA
* * * * *
41259 GGGGATAATCCAACCCCATCATTTCCAAGGGGATACTCTAACCCTGTTTTTACTTCCCAAATATT
1 GGGGATACTCCAACCCCATCATTTCTAAGGGGATACTCCAACCCTATTTTTACTTCCAAAATATT
* * *
41324 AAAATTTTCATC-TT
66 AAATTTTTCACCATC
** *
41338 GGGGATACTCCAACCCCATCATCACTGAGGGGATACTCCAACCCTATTTTTACTTCCAAAATATT
1 GGGGATACTCCAACCCCATCATTTCTAAGGGGATACTCCAACCCTATTTTTACTTCCAAAATATT
*
41403 AAATTTTTCATC-TC
66 AAATTTTTCACCATC
** * * * ** *
41417 -AAGATACTCCAACCCCACCATCTCTAAGGGGATACTCGAACCC-CGTTTTATTTCCAAAATA-T
1 GGGGATACTCCAACCCCATCATTTCTAAGGGGATACTCCAACCCTATTTTTACTTCCAAAATATT
*
41479 CAATTTTTCACCATC
66 AAATTTTTCACCATC
* *
41494 GGGGATACTCCAA-CCCATCATTTTCGAA-GGGATACTCCAACACC-ATTTTTATTTCCAAAATA
1 GGGGATACTCCAACCCCATCA-TTTCTAAGGGGATACTCCAAC-CCTATTTTTACTTCCAAAATA
*
41556 -TCAATTTTTCACCATC
64 TTAAATTTTTCACCATC
* * ** * *
41572 GGGGATACTCCAACCCTATCATTTTTGGGGGGGATACTCCAA-TCTCGTTTTTACTTCCAAAATA
1 GGGGATACTCCAACCCCATCATTTCT-AAGGGGATACTCCAACCCT-ATTTTTACTTCCAAAATA
* * * *
41636 TTAAATTTATAATCATT
64 TTAAATTTTTCACCATC
*
41653 GGGGGTACTCCAACC
1 GGGGATACTCCAACC
41668 TCGTATTCCG
Statistics
Matches: 277, Mismatches: 43, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
76 11 0.04
77 35 0.13
78 103 0.37
79 75 0.27
80 28 0.10
81 25 0.09
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (80 bp):
GGGGATACTCCAACCCCATCATTTCTAAGGGGATACTCCAACCCTATTTTTACTTCCAAAATATT
AAATTTTTCACCATC
Found at i:41551 original size:155 final size:156
Alignment explanation
Indices: 41262--41566 Score: 386
Period size: 155 Copynumber: 2.0 Consensus size: 156
41252 TTTCTGAGGG
* * * * *
41262 GATAATCCAACCCCATCATTTCCAAGGGGATACTCTAACCCTGTTTTTACTTCCCAAATATTAAA
1 GATAATCCAACCCCACCATCTCCAAGGGGATACTCGAACCCCGTTTTTACTTCCAAAATATTAAA
* * *
41327 ATTTTCATCTTGGGGATACTCCAACCCCATCATCACTGAGGGGATACTCCAACCCTATTTTTACT
66 ATTTTCACCTCGGGGATACTCCAACCCCATCATCACTGAAGGGATACTCCAACCCTATTTTTACT
41392 TCCAAAATATTAAATTTTTCATCTCAA
131 TCCAAAATA-TAAATTTTTCATCTCAA
* * * *
41419 GATACTCCAACCCCACCATCTCTAAGGGGATACTCGAACCCCG-TTTTATTTCCAAAATA-TCAA
1 GATAATCCAACCCCACCATCTCCAAGGGGATACTCGAACCCCGTTTTTACTTCCAAAATATTAAA
* **
41482 TTTTTCACCATCGGGGATACTCCAA-CCCATCAT-TTTCGAAGGGATACTCCAACACC-ATTTTT
66 ATTTTCACC-TCGGGGATACTCCAACCCCATCATCACT-GAAGGGATACTCCAAC-CCTATTTTT
* *
41544 ATTTCCAAAATATCAATTTTTCA
128 ACTTCCAAAATATAAATTTTTCA
41567 CCATCGGGGA
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
154 11 0.09
155 50 0.39
156 30 0.23
157 37 0.29
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (156 bp):
GATAATCCAACCCCACCATCTCCAAGGGGATACTCGAACCCCGTTTTTACTTCCAAAATATTAAA
ATTTTCACCTCGGGGATACTCCAACCCCATCATCACTGAAGGGATACTCCAACCCTATTTTTACT
TCCAAAATATAAATTTTTCATCTCAA
Found at i:46358 original size:71 final size:72
Alignment explanation
Indices: 46240--46416 Score: 268
Period size: 71 Copynumber: 2.5 Consensus size: 72
46230 ACTTTATTCA
*
46240 ATGTATCGATACATGTATGAATGTATTGATACATTCTTCAATATATCGATACATTCTATC-TTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATATATCGATACATTCTATCTTTTT
*
46304 TACCTAG
66 TACCCAG
* * *
46311 ATGTATCGATACATGTATGAATATATCGATACATTTTTCAATGTATCGATACATTCTATCTTTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATATATCGATACATTCTATCTTTTT
*
46376 TTCCCAG
66 TACCCAG
*
46383 ATGTATCGATACAT-TATTCAATGTATCGATACAT
1 ATGTATCGATACATGTA-TGAATGTATCGATACAT
46417 CTAGTTAATT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 58 0.60
72 38 0.40
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (72 bp):
ATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATATATCGATACATTCTATCTTTTT
TACCCAG
Found at i:46365 original size:20 final size:20
Alignment explanation
Indices: 46220--46365 Score: 87
Period size: 20 Copynumber: 6.8 Consensus size: 20
46210 TTTTACCCAG
46220 ATGTATCGATAC-TTTATTCA
1 ATGTATCGATACATTT-TTCA
* * *
46240 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
46260 ATGTATTGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
46280 ATATATCGATACATTCTATCTTTTTACCTA
1 ATGTATCGAT--A--C-A--TTTTT--C-A
* * *
46310 GATGTATCGATACATGTATGA
1 -ATGTATCGATACATTTTTCA
*
46331 ATATATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
46351 ATGTATCGATACATT
1 ATGTATCGATACATT
46366 CTATCTTTTT
Statistics
Matches: 94, Mismatches: 20, Indels: 24
0.68 0.14 0.17
Matches are distributed among these distances:
20 67 0.71
21 3 0.03
22 1 0.01
24 4 0.04
25 1 0.01
26 1 0.01
27 5 0.05
29 2 0.02
30 1 0.01
31 9 0.10
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:50889 original size:165 final size:161
Alignment explanation
Indices: 50645--51192 Score: 505
Period size: 165 Copynumber: 3.4 Consensus size: 161
50635 TGAAATATAG
* * * *
50645 AGTTTTTTACTCCATAAATTTTTTTGAGAGGATTTTTCTTAGTTTTAAATTTTTAAAATTCATAA
1 AGTTTTCTACTCCATAAATTTTTTCGAG-GAATTTTTCTTAGTTTTAAA-TTTTAAAATTCATCA
* *
50710 AATATTATTATTTAATTCCTTTTAAATGAATTTTCAAAAATTCATTCATTTTCAATCATTTTTCT
64 AATATTATTATTTAATTCATATTAAAT-AATTTTCAAAAATTCATTCATTTTCAATCATTTTTCT
* *
50775 TTTTCTCTTTGAAAATCTCCTCTTTCTGAAATACGG
128 TTTTCTCTTTG-AAATCTCCT-TTTCTGAAAAACGA
*
50811 AGTTTTCTACTCCATAAATTTTTTCGAGGAATTTTTCTTGGTTTTTAAATTTTAAAATTCATCAA
1 AGTTTTCTACTCCATAAATTTTTTCGAGGAATTTTTCTTAG-TTTTAAATTTTAAAATTCATCAA
*
50876 ATATTATTATTTAATTCATATTAAATAATTTTTCAAAAATTCACTCATTTT---TCA----T-TT
65 ATATTATTATTTAATTCATATTAAATAA-TTTTCAAAAATTCATTCATTTTCAATCATTTTTCTT
* ** *
50933 TTTC-C-TTGAAATTTCCCTATTTCCAAAAAATGA
129 TTTCTCTTTGAAATCT-CCT-TTTCTGAAAAACGA
* ** * * * *
50966 AGTTTTTTTGTTCCGTAAATGTTTTT-GAGGGTATTTTT-TTGGGTTTTTAATTTTTAAAATTCA
1 AG-TTTTCTACTCCATAAAT-TTTTTCGA-GGAATTTTTCTT-AG-TTTTAAATTTTAAAATTCA
* * * *
51029 TCAAATATTGTTATTTAATTCATATTAAA-ACAATTTCAAAAAATTCATTAATTTTCATGAT-TT
61 TCAAATATTATTATTTAATTCATATTAAATA-ATTTTC-AAAAATTCATTCATTTTCA--ATCAT
* * *
51092 TTTTCTTTTT-TCTTTGAAATCCCCTTATTTTCGAAAAACCA
122 TTTTCTTTTTCTCTTTGAAATCTCCTT-TTCT-GAAAAACGA
* * * *
51133 AGTTTTCTACTCCGTAAATGTTTTCAAGGAGATTTTTCTTAGTTTGAAATTCTTAAAATT
1 AGTTTTCTACTCCATAAATTTTTTCGAGGA-ATTTTTCTTAGTTTTAAATT-TTAAAATT
51193 TGTATAATAT
Statistics
Matches: 313, Mismatches: 42, Indels: 54
0.77 0.10 0.13
Matches are distributed among these distances:
154 5 0.02
155 17 0.05
156 23 0.07
157 84 0.27
158 1 0.00
162 4 0.01
164 2 0.01
165 86 0.27
166 74 0.24
167 17 0.05
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (161 bp):
AGTTTTCTACTCCATAAATTTTTTCGAGGAATTTTTCTTAGTTTTAAATTTTAAAATTCATCAAA
TATTATTATTTAATTCATATTAAATAATTTTCAAAAATTCATTCATTTTCAATCATTTTTCTTTT
TCTCTTTGAAATCTCCTTTTCTGAAAAACGA
Found at i:51604 original size:4 final size:4
Alignment explanation
Indices: 51583--51628 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
51573 GCTGAAAAAC
* *
51583 AAGA GAGA AA-A AAAA AAGA AAGGA AAGA AAGA AAGA AAGA AA-A AAG
1 AAGA AAGA AAGA AAGA AAGA AA-GA AAGA AAGA AAGA AAGA AAGA AAG
51629 GAAAAAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
3 6 0.17
4 26 0.72
5 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:51610 original size:24 final size:24
Alignment explanation
Indices: 51583--51632 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
51573 GCTGAAAAAC
*
51583 AAGAGAGAAA-AAAAAAAGAAAGGA
1 AAGAAAGAAAGAAAAAAA-AAAGGA
*
51607 AAGAAAGAAAGAAAGAAAAAAGGA
1 AAGAAAGAAAGAAAAAAAAAAGGA
51631 AA
1 AA
51633 AAATGGTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (24 bp):
AAGAAAGAAAGAAAAAAAAAAGGA
Found at i:51632 original size:12 final size:13
Alignment explanation
Indices: 51597--51632 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
51587 GAGAAAAAAA
51597 AAAGAAAGGAAAG
1 AAAGAAAGGAAAG
51610 AAAGAAA-GAAAG
1 AAAGAAAGGAAAG
51622 AAA-AAAGGAAA
1 AAAGAAAGGAAA
51633 AAATGGTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.14
12 12 0.55
13 7 0.32
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (13 bp):
AAAGAAAGGAAAG
Found at i:53568 original size:153 final size:153
Alignment explanation
Indices: 53258--53641 Score: 375
Period size: 153 Copynumber: 2.5 Consensus size: 153
53248 GCATTTTAGT
* * * *
53258 ATTTTTCTAGAACCGAGTCCTAGTTTATCACTGGGTCTACTTTTATGTTGAAGGTGGGTATTTAG
1 ATTTTT-TAGAATCGAGTCCTAGGTTGTCACTGGGTC-ACTTTTATGTCGAAGGTGGGTATTTAG
* **
53323 GATAGGTTCA-CCCTTTTTCTAATCCTTTAAAGTCCTTTAAGGGTATCGAGCACTTCTACGTTGA
64 GATAAGTTCATCCC-TTTTCTAATCCTTTAAAGTCCTTTAAGGGTATCGAGCACTTCTACGACGA
* * * * *
53387 AGGTATCCTTTAGAGGCATTTTGGTA
128 AAGTAACCTCTAAAGGCATTTTGATA
* * * *
53413 ATTTTTTAGAATCAAGTCCTAGGTTGTCACCGGGTCACTATTATGCCGAAGGTGGGTATTTAGGA
1 ATTTTTTAGAATCGAGTCCTAGGTTGTCACTGGGTCACTTTTATGTCGAAGGTGGGTATTTAGGA
* * * *
53478 TAAGTTCATCCC-TTTCATAATTCTCTT-AAGT-CTTTTAGGGTAATCGAGATACTTTTACGACG
66 TAAGTTCATCCCTTTTC-TAATCCT-TTAAAGTCCTTTAAGGGT-ATCGAG-CACTTCTACGACG
* *
53540 AAAGTAACC-CTAAAGGCTTTTTTATA
127 AAAGTAACCTCTAAAGGCATTTTGATA
* * * ** ** *
53566 ATTTTTTAAAATCGATTCCT-GAGTTGCCACTGCATTTGCTTTTATGTCGAAGGTGGGTATTGAG
1 ATTTTTTAGAATCGAGTCCTAG-GTTGTCACTG-GGTCACTTTTATGTCGAAGGTGGGTATTTAG
53630 GATAAGTTCATC
64 GATAAGTTCATC
53642 TAATCCATAA
Statistics
Matches: 188, Mismatches: 34, Indels: 15
0.79 0.14 0.06
Matches are distributed among these distances:
152 14 0.07
153 86 0.46
154 82 0.44
155 6 0.03
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (153 bp):
ATTTTTTAGAATCGAGTCCTAGGTTGTCACTGGGTCACTTTTATGTCGAAGGTGGGTATTTAGGA
TAAGTTCATCCCTTTTCTAATCCTTTAAAGTCCTTTAAGGGTATCGAGCACTTCTACGACGAAAG
TAACCTCTAAAGGCATTTTGATA
Found at i:56627 original size:21 final size:21
Alignment explanation
Indices: 56601--56654 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
56591 TTTTTGTTTA
56601 AATGTATCGATAAATTTCTTG
1 AATGTATCGATAAATTTCTTG
56622 AATGTATCGATAAATTTCTTG
1 AATGTATCGATAAATTTCTTG
56643 AATGTATCGATA
1 AATGTATCGATA
56655 CAAGGTCCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (21 bp):
AATGTATCGATAAATTTCTTG
Found at i:62868 original size:13 final size:13
Alignment explanation
Indices: 62850--62911 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
62840 ATACAAAGAT
62850 CAATGTATCGATA
1 CAATGTATCGATA
62863 CAATGTATCGATA
1 CAATGTATCGATA
62876 C-AT-T-T-GAGT-
1 CAATGTATCGA-TA
62885 -AATGTATCGATA
1 CAATGTATCGATA
62897 CAATGTATCGATA
1 CAATGTATCGATA
62910 CA
1 CA
62912 TTTGAGTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
9 4 0.10
10 3 0.07
11 3 0.07
12 4 0.10
13 28 0.67
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:62894 original size:34 final size:34
Alignment explanation
Indices: 62851--62932 Score: 164
Period size: 34 Copynumber: 2.4 Consensus size: 34
62841 TACAAAGATC
62851 AATGTATCGATACAATGTATCGATACATTTGAGT
1 AATGTATCGATACAATGTATCGATACATTTGAGT
62885 AATGTATCGATACAATGTATCGATACATTTGAGT
1 AATGTATCGATACAATGTATCGATACATTTGAGT
62919 AATGTATCGATACA
1 AATGTATCGATACA
62933 TTTTTTGGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (34 bp):
AATGTATCGATACAATGTATCGATACATTTGAGT
Found at i:62994 original size:13 final size:13
Alignment explanation
Indices: 62976--63000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62966 AAAAAAAATA
62976 TGTATCGATACAT
1 TGTATCGATACAT
62989 TGTATCGATACA
1 TGTATCGATACA
63001 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:67459 original size:167 final size:164
Alignment explanation
Indices: 66883--67587 Score: 575
Period size: 166 Copynumber: 4.3 Consensus size: 164
66873 CGATATATAT
** * * ** *
66883 AAAAAATTTAAAATTTATG-AAATAAATAGAATATTTCAAAACTGATTTAATGGGAGTTAAATAA
1 AAAAAATCAAAAATTTATGAAAATAAAT-GAATTTTTGAAAACTGATTTAATATGAATTAAATAA
* * ** * ** * *
66947 CAATATTAGATGAATTTTAAACATTTTAAATCAAGAAAAATCACCTCAAAAATATTTATTG-AGT
65 CAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATC-CCTTGAAAACATTTA-CGAAGT
* * **
67011 AGAAAACTTAGTTTTTCGAAAAAAG-GGATTTTAAAG
128 AGAAAACTTATTTTTTAGAAAAAAGAAAATTTTAAAG
* * * * * ** *
67047 AAAAAATCCAAAACTTATGAAAATAAATTAATTTTTTAAAACTAATTTAATATGAATCCAATGAC
1 AAAAAATCAAAAATTTATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGAATTAAATAAC
* * ** * *
67112 AATATTTTAT-AAGTTTTAAAAATCAAAAACCAAGAAAAATTCCAGTGAAAGCATTTACGGAGTA
66 AATATTTGATGAA-TTTTAAAAATTAAAAACCAAGAAAAA-TCCCTTGAAAACATTTACGAAGTA
* * * *
67176 AAAAACTTCA-TATTTAAAAAATAAGAAAA-TTTCAAG
129 GAAAACTT-ATTTTTTAGAAAA-AAGAAAATTTTAAAG
* * * * * * *
67212 GAAAAATCGAAAAATTTATGAAAATAAGTGAATTTTTGTAGACTGATTTAATGTGAATAAAATGA
1 AAAAAATC-AAAAATTTATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGAATTAAATAA
* * *
67277 TAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATTCCCTTGAAAACATTTACAAAGTA
65 CAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAA-TCCCTTGAAAACATTTACGAAGTA
* *
67342 GAAAACTCTATTTTTTGGAAACAAGAAAATTTTAAAG
129 GAAAACT-TATTTTTTAGAAAAAAGAAAATTTTAAAG
* * * *
67379 AAAAAATTCAAAAATTTATGAATATGAATGAATTTTTGAGAACTGATTTTATATGAATTAAATAA
1 AAAAAA-TCAAAAATTTATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGAATTAAATAA
* * * * *
67444 TAATATTTGATGAATTTTAAAAATTAAATACCAA-AAAAATCCTCTTGAAAAAATATACGAAGAA
65 CAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCC-CTTGAAAACATTTACGAAGTA
* ** * *
67508 GAAAACCTTGTAATTTA-AAAACAGGAGAAATTCTAAA-
129 GAAAA-CTTATTTTTTAGAAAA-AAGA-AAATTTTAAAG
* * * * *
67545 AGAAAATCAATAACTTAAG-AAATAAATGGAATTTTTCAAAACT
1 AAAAAATCAAAAATTTATGAAAATAAAT-GAATTTTTGAAAACT
67588 AACTTGGTTG
Statistics
Matches: 431, Mismatches: 92, Indels: 35
0.77 0.16 0.06
Matches are distributed among these distances:
163 3 0.01
164 106 0.25
165 56 0.13
166 154 0.36
167 110 0.26
168 2 0.00
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.31
Consensus pattern (164 bp):
AAAAAATCAAAAATTTATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGAATTAAATAAC
AATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCTTGAAAACATTTACGAAGTAGA
AAACTTATTTTTTAGAAAAAAGAAAATTTTAAAG
Found at i:68556 original size:43 final size:43
Alignment explanation
Indices: 68484--68766 Score: 218
Period size: 43 Copynumber: 6.6 Consensus size: 43
68474 GTAGATGAAG
* * *
68484 GATAAAG-AAGTCTCCCAGGTCTAAACTGATGGGCAGACAAAA
1 GATAAAGAAAGTCTCCTAGGTCTGAGCTGATGGGCAGACAAAA
* *
68526 GATAAAGAAAGTCTCCTAGGTTTGAGCTGATGGGCAGACAAGA
1 GATAAAGAAAGTCTCCTAGGTCTGAGCTGATGGGCAGACAAAA
* * * * * *
68569 GATAAAAAAAGTCTCCCAAGTCTAAGCTGGTGGGCAAACAAAA
1 GATAAAGAAAGTCTCCTAGGTCTGAGCTGATGGGCAGACAAAA
* * * * *
68612 GATAAAGAATGT-TTCTCAAGTCTGAGTTGATGAGCAGACAAAA
1 GATAAAGAAAGTCTCCT-AGGTCTGAGCTGATGGGCAGACAAAA
* * * * *
68655 -ATTAAAGAAACTC-CGCCAGGTTTGAGCTGACGGGTAGACAAAA
1 GA-TAAAGAAAGTCTC-CTAGGTCTGAGCTGATGGGCAGACAAAA
* * * * *** *
68698 AATAAAAAAAGTCT-CTCGGGTTTGAGCTGACAAGTAGACAAAA
1 GATAAAGAAAGTCTCCT-AGGTCTGAGCTGATGGGCAGACAAAA
*
68741 AATAAAG-AAGTCTCCTAGGTCTGAGC
1 GATAAAGAAAGTCTCCTAGGTCTGAGC
68767 CGATAATAAA
Statistics
Matches: 191, Mismatches: 41, Indels: 18
0.76 0.16 0.07
Matches are distributed among these distances:
42 25 0.13
43 164 0.86
44 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (43 bp):
GATAAAGAAAGTCTCCTAGGTCTGAGCTGATGGGCAGACAAAA
Found at i:68866 original size:42 final size:42
Alignment explanation
Indices: 68804--68969 Score: 145
Period size: 42 Copynumber: 3.9 Consensus size: 42
68794 GCTGACAAGT
* * ** * * *
68804 AGACAAAGGATAAATAAAGTCTCTTGGGTCTAAGCCGATAGGC
1 AGACAAAAGATAAA-GAAGTCTCCCGAGTCTAAGCCAACAGGC
* *
68847 AGACAAAAGATAAAGAAGTCTCCCGAGTCTGAGCCAACGGGC
1 AGACAAAAGATAAAGAAGTCTCCCGAGTCTAAGCCAACAGGC
* * ***
68889 AAACAAAAGATAAAGAAGTCTCCCGAGTCTGAGCTGTC-GTGC
1 AGACAAAAGATAAAGAAGTCTCCCGAGTCTAAGCCAACAG-GC
* * *
68931 AGGCAAAAGATAAAGAAAGTCTCCCGGGTTTAAGCCAAC
1 AGACAAAAGATAAAG-AAGTCTCCCGAGTCTAAGCCAAC
68970 GAGTAAATAA
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 69 0.69
43 30 0.30
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (42 bp):
AGACAAAAGATAAAGAAGTCTCCCGAGTCTAAGCCAACAGGC
Found at i:68877 original size:114 final size:114
Alignment explanation
Indices: 68674--68881 Score: 274
Period size: 114 Copynumber: 1.8 Consensus size: 114
68664 ACTCCGCCAG
** * * * *
68674 GTTTGAGCTGACGGGTAGACAAAAAATAAAAAAAGTCTCTCGGGTTTGAGCTGACAAGTAGACAA
1 GTTTGAGCTGACAAGTAGACAAAAAATAAAAAAAGTCTCTCGGGTCTAAGCCGACAAGCAGACAA
*
68739 AAAATAAAGAAGTCTCCTAGGTCTGAGCCGATAATAAAGAAGTCTCCTT
66 AAAATAAAGAAGTCTCCGAGGTCTGAGCCGATAATAAAGAAGTCTCCTT
** * * * *
68788 GTTTGAGCTGACAAGTAGACAAAGGATAAATAAAGTCTCTTGGGTCTAAGCCGATAGGCAGACAA
1 GTTTGAGCTGACAAGTAGACAAAAAATAAAAAAAGTCTCTCGGGTCTAAGCCGACAAGCAGACAA
*
68853 AAGATAAAGAAGTCTCCCGA-GTCTGAGCC
66 AAAATAAAGAAGTCT-CCGAGGTCTGAGCC
68882 AACGGGCAAA
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
114 76 0.96
115 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (114 bp):
GTTTGAGCTGACAAGTAGACAAAAAATAAAAAAAGTCTCTCGGGTCTAAGCCGACAAGCAGACAA
AAAATAAAGAAGTCTCCGAGGTCTGAGCCGATAATAAAGAAGTCTCCTT
Found at i:69356 original size:60 final size:57
Alignment explanation
Indices: 69171--69841 Score: 457
Period size: 60 Copynumber: 11.2 Consensus size: 57
69161 CTAACACCAA
* * * * *
69171 TATAGTCAAACGAGGAAAGTCTTGACTAAATATAGTCAAGAGGGATAAGATTTGACTGAG
1 TATAGTCAAATGAGGATAGTCTTGAC-GAATACAGTCAAGAGGG-TGAGATTTGACT-AG
* * * * ** * * *
69231 TACAGTTAAATAAGGAAAAACTTGACTGAATACAATCAAGCAATGGTGA-ATTTTGACTGAA
1 TATAGTCAAATGAGGATAGTCTTGAC-GAATACAGTCAAG--AGGGTGAGA-TTTGACT-AG
* *
69292 TATAGTCAAATGAGGATTGTCTTGACGGAATACAGTCATGAGAGGTGAGATTTGATCTAG
1 TATAGTCAAATGAGGATAGTCTTGAC-GAATACAGTCAAGAG-GGTGAGATTTGA-CTAG
* ** * * *
69352 TATAGTCAAATGAGGAAAACCTTGACCGAATACAGTCAAAAGGGTGAAATTTGACTGAA
1 TATAGTCAAATGAGGATAGTCTTGA-CGAATACAGTCAAGAGGGTGAGATTTGACT-AG
* * * * *
69411 TATAGTAAAATAAGGATTGTCTTGACCGAATATAGTCAAGAGGGGTGAGATTTGATCGAG
1 TATAGTCAAATGAGGATAGTCTTGA-CGAATACAGTCAAGA-GGGTGAGATTTGA-CTAG
* * * * * * * *
69471 TATAGTCAAATAAGGAAAGGCTTGATCGAATATAGTCAAAAGGGTGAAATTTGATCGAA
1 TATAGTCAAATGAGGATAGTCTTGA-CGAATACAGTCAAGAGGGTGAGATTTGA-CTAG
*
69530 TATAGTCAAATGAGGATAGTCTTGACTAAATACAGTCAAGAGGGGTGAGATTTGACTAAG
1 TATAGTCAAATGAGGATAGTCTTGAC-GAATACAGTCAAGA-GGGTGAGATTTGACT-AG
* * * * * * * * *
69590 TACAGCCAAAT-ACGGAAAGACTTGATCGAATACAATTAAGAGGGAATGAAATTTGACCAAA
1 TATAGTCAAATGA-GGATAGTCTTGA-CGAATACAGTCAAGAGGG--TGAGATTTGA-CTAG
* * *
69651 TACAGTCAAATAAGGATAGTCTTGATCGAATACAGTCAAGAAGGGTGAGATTTGACCGAG
1 TATAGTCAAATGAGGATAGTCTTGA-CGAATACAGTCAAG-AGGGTGAGATTTGA-CTAG
* ** *
69711 TACAGTCAAATGAGGATAGTCTTGATTTAATAAAGTCAAGAGGGGTGAGATTTGACTGAG
1 TATAGTCAAATGAGGATAGTCTTGA-CGAATACAGTCAAGA-GGGTGAGATTTGACT-AG
* * * ** * * *
69771 TACAGTCAAAAGAGGAAAGAATTGACCAATACA-TCAAGAGGGGTAAGATCTGACTGAG
1 TATAGTCAAATGAGGATAGTCTTGACGAATACAGTCAAGA-GGGTGAGATTTGACT-AG
* *
69829 TACAGTCTAATGA
1 TATAGTCAAATGA
69842 CGATGGAAAG
Statistics
Matches: 495, Mismatches: 94, Indels: 46
0.78 0.15 0.07
Matches are distributed among these distances:
58 37 0.07
59 107 0.22
60 252 0.51
61 90 0.18
62 9 0.02
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (57 bp):
TATAGTCAAATGAGGATAGTCTTGACGAATACAGTCAAGAGGGTGAGATTTGACTAG
Found at i:69442 original size:119 final size:117
Alignment explanation
Indices: 69169--69835 Score: 574
Period size: 119 Copynumber: 5.6 Consensus size: 117
69159 TCCTAACACC
** * ** * *
69169 AATATAGTCAAACGAGGAAAGTCTTGACTAAATATAGTCAAGAG-GGATAAGATTTGACTGAGTA
1 AATATAGTCAAATAAGGATAGTCTTGACCGAATACAGTCAAGAGAGG-TGAGATTTGACT-AGTA
* * * *
69233 CAGTTAAATAAGGAAAAACTTGACTGAATACAATCAAGCAATGGTGAATTTTGACTG
64 CAGTCAAATAAGG-AAAACTTGACCGAATACAATCAA--AAGGGTGAAATTTGACTG
* * * * *
69290 AATATAGTCAAATGAGGATTGTCTTGACGGAATACAGTCATGAGAGGTGAGATTTGATCTAGTAT
1 AATATAGTCAAATAAGGATAGTCTTGACCGAATACAGTCAAGAGAGGTGAGATTTGA-CTAGTAC
* *
69355 AGTCAAATGAGGAAAACCTTGACCGAATACAGTCAAAAGGGTGAAATTTGACTG
65 AGTCAAATAAGGAAAA-CTTGACCGAATACAATCAAAAGGGTGAAATTTGACTG
* * * * * *
69409 AATATAGTAAAATAAGGATTGTCTTGACCGAATATAGTCAAGAGGGGTGAGATTTGATCGAGTAT
1 AATATAGTCAAATAAGGATAGTCTTGACCGAATACAGTCAAGAGAGGTGAGATTTGA-CTAGTAC
* * * *
69474 AGTCAAATAAGGAAAGGCTTGATCGAATATAGTCAAAAGGGTGAAATTTGA-TCG
65 AGTCAAATAAGGAAA-ACTTGACCGAATACAATCAAAAGGGTGAAATTTGACT-G
* ** *
69528 AATATAGTCAAATGAGGATAGTCTTGACTAAATACAGTCAAGAGGGGTGAGATTTGACTAAGTAC
1 AATATAGTCAAATAAGGATAGTCTTGACCGAATACAGTCAAGAGAGGTGAGATTTGACT-AGTAC
* * * * * **
69593 AGCCAAATACGGAAAGACTTGATCGAATACAATTAAGAGGGAATGAAATTTGACCA
65 AGTCAAATAAGGAAA-ACTTGACCGAATACAATCAAAAGGG--TGAAATTTGACTG
* * *
69649 AATACAGTCAAATAAGGATAGTCTTGATCGAATACAGTCAAGA-AGGGTGAGATTTGACCGAGTA
1 AATATAGTCAAATAAGGATAGTCTTGACCGAATACAGTCAAGAGA-GGTGAGATTTGA-CTAGTA
* ** *** * *
69713 CAGTCAAATGAGGATAGTCTTGATTTAATA-AAGTCAAGAGGGGTGAGATTTGACTG
64 CAGTCAAATAAGGA-AAACTTGACCGAATACAA-TCAA-AAGGGTGAAATTTGACTG
* * * ** * * *
69769 AGTACAGTCAAA-AGAGGAAAGAATTGACC-AATACA-TCAAGAGGGGTAAGATCTGACTGAGTA
1 AATATAGTCAAATA-AGGATAGTCTTGACCGAATACAGTCAAGAGAGGTGAGATTTGACT-AGTA
69831 CAGTC
64 CAGTC
69836 TAATGACGAT
Statistics
Matches: 457, Mismatches: 72, Indels: 37
0.81 0.13 0.07
Matches are distributed among these distances:
117 1 0.00
118 27 0.06
119 217 0.47
120 38 0.08
121 165 0.36
122 9 0.02
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (117 bp):
AATATAGTCAAATAAGGATAGTCTTGACCGAATACAGTCAAGAGAGGTGAGATTTGACTAGTACA
GTCAAATAAGGAAAACTTGACCGAATACAATCAAAAGGGTGAAATTTGACTG
Found at i:69475 original size:30 final size:29
Alignment explanation
Indices: 69373--69539 Score: 124
Period size: 30 Copynumber: 5.7 Consensus size: 29
69363 GAGGAAAACC
* * *
69373 TTGACCGAATACAGTCAAAAGGGTGAAAT
1 TTGATCGAATATAGTCAAAAGGGTGAGAT
* * *
69402 TTGA-CTGAATATAGTAAAATAAGGAT-TG-T
1 TTGATC-GAATATAGT-CAA-AAGGGTGAGAT
* *
69431 CTTGACCGAATATAGTCAAGAGGGGTGAGAT
1 -TTGATCGAATATAGTCAA-AAGGGTGAGAT
* * ** **
69462 TTGATCGAGTATAGTCAAATAAGGAAAGGC
1 TTGATCGAATATAGTCAAA-AGGGTGAGAT
*
69492 TTGATCGAATATAGTCAAAAGGGTGAAAT
1 TTGATCGAATATAGTCAAAAGGGTGAGAT
69521 TTGATCGAATATAGTCAAA
1 TTGATCGAATATAGTCAAA
69540 TGAGGATAGT
Statistics
Matches: 105, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
28 1 0.01
29 43 0.41
30 54 0.51
31 7 0.07
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.26
Consensus pattern (29 bp):
TTGATCGAATATAGTCAAAAGGGTGAGAT
Found at i:69585 original size:30 final size:30
Alignment explanation
Indices: 69551--69835 Score: 106
Period size: 30 Copynumber: 9.5 Consensus size: 30
69541 GAGGATAGTC
*
69551 TTGACTAAATACAGTCAAGAGGGGTGAGAT
1 TTGACTGAATACAGTCAAGAGGGGTGAGAT
* ** ** *
69581 TTGACT-AAGTACAGCCAA-ATACGGAAAGAC
1 TTGACTGAA-TACAGTCAAGA-GGGGTGAGAT
* * * *
69611 TTGA-TCGAATACAATTAAGAGGGAATGAAAT
1 TTGACT-GAATACAGTCAAGAGGG-GTGAGAT
** * * *
69642 TTGACCAAATACAGTCAAATAAGGAT-AG-T
1 TTGACTGAATACAGTC-AAGAGGGGTGAGAT
*
69671 CTTGA-TCGAATACAGTCAAGAAGGGTGAGAT
1 -TTGACT-GAATACAGTCAAGAGGGGTGAGAT
* * *
69702 TTGACCGAGTACAGTCAA-ATGAGGAT-AG-T
1 TTGACTGAATACAGTCAAGA-G-GGGTGAGAT
* * *
69731 CTTGATTTAATAAAGTCAAGAGGGGTGAGAT
1 -TTGACTGAATACAGTCAAGAGGGGTGAGAT
* * * ** *
69762 TTGACTGAGTACAGTCAAAAGAGGAAAGAA
1 TTGACTGAATACAGTCAAGAGGGGTGAGAT
* *
69792 TTGAC-CAATACA-TCAAGAGGGGTAAGAT
1 TTGACTGAATACAGTCAAGAGGGGTGAGAT
* *
69820 CTGACTGAGTACAGTC
1 TTGACTGAATACAGTC
69836 TAATGACGAT
Statistics
Matches: 179, Mismatches: 55, Indels: 42
0.65 0.20 0.15
Matches are distributed among these distances:
28 16 0.09
29 27 0.15
30 107 0.60
31 24 0.13
32 5 0.03
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (30 bp):
TTGACTGAATACAGTCAAGAGGGGTGAGAT
Found at i:69902 original size:35 final size:35
Alignment explanation
Indices: 69829--69920 Score: 94
Period size: 35 Copynumber: 2.6 Consensus size: 35
69819 TCTGACTGAG
* * * * *
69829 TACAGTCTAATGACGATGGAAAGAGTTTAACTAGA
1 TACAGTCAAACGATGATGGAAAGAGTTTAACCAAA
* *
69864 TACAGTCAAACGATGATTGAAAGAGTTTGACCAAA
1 TACAGTCAAACGATGATGGAAAGAGTTTAACCAAA
* * *
69899 TACAATCACACAATGATGGAAA
1 TACAGTCAAACGATGATGGAAA
69921 AAGCTTAAGA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (35 bp):
TACAGTCAAACGATGATGGAAAGAGTTTAACCAAA
Found at i:77889 original size:13 final size:13
Alignment explanation
Indices: 77871--77896 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77861 TACAGCAAGT
77871 ATGTATCGATACA
1 ATGTATCGATACA
77884 ATGTATCGATACA
1 ATGTATCGATACA
77897 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:78417 original size:34 final size:35
Alignment explanation
Indices: 78354--78420 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
78344 CTAAGTGATT
78354 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
78390 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
78421 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:83178 original size:13 final size:13
Alignment explanation
Indices: 83160--83185 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83150 TACAGCAAGT
83160 ATGTATCGATACA
1 ATGTATCGATACA
83173 ATGTATCGATACA
1 ATGTATCGATACA
83186 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:83706 original size:34 final size:35
Alignment explanation
Indices: 83643--83709 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
83633 CTAAGTGATT
83643 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
83679 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
83710 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:86799 original size:31 final size:31
Alignment explanation
Indices: 86703--86854 Score: 157
Period size: 30 Copynumber: 4.8 Consensus size: 31
86693 TCTTTTTTTT
* *
86703 AAGTCCACGACTTAGTGGCATCTTGTC-TCA
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCA
* * *
86733 AAGTCCACAATTCAGTGGCATCTTTT-TCCA
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCA
*
86763 AAGTCCACGACTCAGTGGTATCTTTTCTTCA
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCA
*
86794 AAGTCCACGACTCCGTGGCA-CATTTTTCTTTTCA
1 AAGTCCACGACTCAGTGGCATC--TTTTC--TTCA
* *
86828 AAGTCCACAACTCCGTGGCACTCTTTT
1 AAGTCCACGACTCAGTGGCA-TCTTTT
86855 TAAAGCCCAC
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
30 48 0.47
31 21 0.21
32 5 0.05
34 27 0.26
36 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (31 bp):
AAGTCCACGACTCAGTGGCATCTTTTCTTCA
Found at i:86833 original size:34 final size:34
Alignment explanation
Indices: 86794--87471 Score: 808
Period size: 34 Copynumber: 20.3 Consensus size: 34
86784 CTTTTCTTCA
* * *
86794 AAGTCCACGACTCCGTGGCA-CATT-TTTCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
* *
86826 CAAAGTCCACAACTCCGTGGCA--C-TCTT--TTTA
1 --AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
*
86857 AAGCCCACAACTCCGTGGCA-CC-----C-TTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
* * *
86884 AAGTCCACAACTCTGTGGCACCCTTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTT-CCTTTT
* * *
86919 AAGCCCACACCTCCGTGGCA-CCTTATTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
** *
86952 AAGTCCACAA-TATGTGGCAT-CTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
*
86984 AAAGTCCACAACCCCGTGGCA-CCTT-TTCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
* *
87017 AAGTCCACGACTCCGTGGCA-CCTTTTTCCCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTT--CCTTTT
* *
87052 AAGCCCACACCTCCGTGGCA-CCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
* * * *
87085 AAGCCCACACCTCTGTGGCATCCTTGTTCTTTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTC-CTTTT
* *
87120 AAGTCCATAACTCTGTGGCATCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
* * *
87154 AAGTCGAAAACTCTGTGGCATCCTTGTTCCTTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCC-TTTT
87189 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
87223 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCC-TTTT
87258 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
87292 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCC-TTTT
87327 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
87361 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
*
87395 AAGTCCACAACTCCGTGGCACCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
*
87429 AAGTCCACAACTCCGTGGCAT-CTT-TCTCCTGTT
1 AAGTCCACAACTCCGTGGCATCCTTGT-TCCTTTT
*
87462 AAGCCCACAA
1 AAGTCCACAA
87472 GTTAGTGGCA
Statistics
Matches: 580, Mismatches: 40, Indels: 49
0.87 0.06 0.07
Matches are distributed among these distances:
27 21 0.04
28 2 0.00
29 19 0.03
30 1 0.00
31 3 0.01
32 42 0.07
33 79 0.14
34 234 0.40
35 179 0.31
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.35
Consensus pattern (34 bp):
AAGTCCACAACTCCGTGGCATCCTTGTTCCTTTT
Found at i:86864 original size:29 final size:29
Alignment explanation
Indices: 86697--86911 Score: 143
Period size: 30 Copynumber: 7.2 Consensus size: 29
86687 CAAATCTCTT
* * **
86697 TTTTTTAAGTCCACGACTTAGTGGCA-TC
1 TTTTTAAAGTCCACAACTCCGTGGCACTC
* * *
86725 TTGTCTCAAAGTCCACAATTCAGTGGCA-TC
1 TT-T-TTAAAGTCCACAACTCCGTGGCACTC
* * *
86755 TTTTTCCAAAGTCCACGACTCAGTGGTA-TC
1 TTTTT--AAAGTCCACAACTCCGTGGCACTC
*
86785 TTTTCTTCAAAGTCCACGACTCCGTGGCACATTTTTC
1 -TTT-TT-AAAGTCCACAACTCCGTGGCAC-----TC
*
86822 TTTTCAAAGTCCACAACTCCGTGGCACTC
1 TTTTTAAAGTCCACAACTCCGTGGCACTC
*
86851 TTTTTAAAGCCCACAACTCCGTGGCAC-C
1 TTTTTAAAGTCCACAACTCCGTGGCACTC
* * *
86879 CTTTT-AAGTCCACAACTCTGTGGCACCC
1 TTTTTAAAGTCCACAACTCCGTGGCACTC
86907 TTTTT
1 TTTTT
86912 CCCTTTTAAG
Statistics
Matches: 155, Mismatches: 19, Indels: 26
0.77 0.09 0.13
Matches are distributed among these distances:
27 19 0.12
28 13 0.08
29 29 0.19
30 42 0.27
31 23 0.15
32 2 0.01
34 21 0.14
35 1 0.01
36 3 0.02
37 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.33
Consensus pattern (29 bp):
TTTTTAAAGTCCACAACTCCGTGGCACTC
Found at i:86901 original size:27 final size:28
Alignment explanation
Indices: 86821--86910 Score: 128
Period size: 27 Copynumber: 3.2 Consensus size: 28
86811 GCACATTTTT
86821 CTTTTCAAAGTCCACAACTCCGTGGCACTC
1 CTTTT-AAAGTCCACAACTCCGTGGCAC-C
* *
86851 TTTTTAAAGCCCACAACTCCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCACC
*
86879 CTTTT-AAGTCCACAACTCTGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCACC
86906 CTTTT
1 CTTTT
86911 TCCCTTTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
27 25 0.45
28 5 0.09
29 21 0.38
30 4 0.07
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.30
Consensus pattern (28 bp):
CTTTTAAAGTCCACAACTCCGTGGCACC
Found at i:86927 original size:35 final size:34
Alignment explanation
Indices: 86878--87471 Score: 810
Period size: 34 Copynumber: 17.5 Consensus size: 34
86868 TCCGTGGCAC
* * *
86878 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* * *
86912 CCCTTTTAAGCCCACACCTCCGTGGCA-CCTTATT
1 -CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
** *
86946 CCTTTTAAGTCCACAA-TATGTGGCAT-CTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
*
86978 CCTTTTAAAGTCCACAACCCCGTGGCA-CCTT-TT
1 CCTTTT-AAGTCCACAACTCCGTGGCATCCTTGTT
* *
87011 CCTTTTAAGTCCACGACTCCGTGGCA-CCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* *
87044 CCCCTTTTAAGCCCACACCTCCGTGGCA-CCTTGTT
1 --CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* * *
87079 CCTTTTAAGCCCACACCTCTGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* * *
87113 CTTTTTTAAGTCCATAACTCTGTGGCATCCTTGTT
1 C-CTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* * *
87148 CCTTTTAAGTCGAAAACTCTGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87182 CCTTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
1 CC-TTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87217 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87251 CCTTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
1 CC-TTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87286 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87320 CCTTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
1 CC-TTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87355 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
*
87389 CCTTTTAAGTCCACAACTCCGTGGCACCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
87423 CCTTTTAAGTCCACAACTCCGTGGCAT-CTT-TCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGT-T
* *
87456 CCTGTTAAGCCCACAA
1 CCTTTTAAGTCCACAA
87472 GTTAGTGGCA
Statistics
Matches: 513, Mismatches: 33, Indels: 28
0.89 0.06 0.05
Matches are distributed among these distances:
32 41 0.08
33 77 0.15
34 214 0.42
35 181 0.35
ACGTcount: A:0.18, C:0.32, G:0.14, T:0.36
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
Found at i:87168 original size:69 final size:69
Alignment explanation
Indices: 86878--87450 Score: 838
Period size: 69 Copynumber: 8.4 Consensus size: 69
86868 TCCGTGGCAC
* * * * * *
86878 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTTCCCTTTTAAGCCCACACCTCCGTGGCA-CCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
*
86942 TATT
66 TGTT
** * * *
86946 CCTTTTAAGTCCACAA-TATGTGGCAT-CTTTTTCCTTTTAAAGTCCACAACCCCGTGGCA-CCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
87008 T-TT
66 TGTT
* * * * *
87011 CCTTTTAAGTCCACGACTCCGTGGCA-CCTTTTTCCCCTTTTAAGCCCACACCTCCGTGGCA-CC
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT-CCTTTTTAAGTCCACAACTCCGTGGCATCC
87074 TTGTT
65 TTGTT
* * * * * *
87079 CCTTTTAAGCCCACACCTCTGTGGCATCCTTGTTCTTTTTTAAGTCCATAACTCTGTGGCATCCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
87144 TGTT
66 TGTT
* * *
87148 CCTTTTAAGTCGAAAACTCTGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
87213 TGTT
66 TGTT
87217 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
87282 TGTT
66 TGTT
87286 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
87351 TGTT
66 TGTT
*
87355 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCC-TTTTAAGTCCACAACTCCGTGGCACCCT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
87419 TGTT
66 TGTT
87423 CCTTTTAAGTCCACAACTCCGTGGCATC
1 CCTTTTAAGTCCACAACTCCGTGGCATC
87451 TTTCTCCTGT
Statistics
Matches: 462, Mismatches: 37, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
65 17 0.04
66 45 0.10
67 34 0.07
68 120 0.26
69 246 0.53
ACGTcount: A:0.18, C:0.32, G:0.14, T:0.36
Consensus pattern (69 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTTCCTTTTTAAGTCCACAACTCCGTGGCATCCT
TGTT
Found at i:87530 original size:28 final size:30
Alignment explanation
Indices: 87462--87531 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
87452 TTCTCCTGTT
* *
87462 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTTTCAA
*
87492 AAACCCACAAGTCAGTGGCAACC-TTT-AA
1 AAGCCCACAAGTCAGTGGCAACCTTTTCAA
*
87520 AAGCACACAAGT
1 AAGCCCACAAGT
87532 TGCTACAACC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 12 0.34
29 3 0.09
30 20 0.57
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.19
Consensus pattern (30 bp):
AAGCCCACAAGTCAGTGGCAACCTTTTCAA
Found at i:87647 original size:49 final size:49
Alignment explanation
Indices: 87577--88395 Score: 793
Period size: 49 Copynumber: 16.8 Consensus size: 49
87567 GGCGTCTTCT
* *
87577 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * *
87626 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAGTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
87669 TTTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTGGCACC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
** * *
87717 TTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTGG---------C
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * *
87758 -GTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGTCACCTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
87806 TTTAAGACCAATATCGTTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * * *
87849 TTTAAGTTCAATGTCGTTGGCCTTGAATCAGCATATTGGCATCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
87898 TTTTAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * *
87950 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
87999 TTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTAGCACCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
** * *
88051 TTTAAGTCCAATGCCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
88100 TTTAAGTCTAATATCGCTGGCCTTGAATTAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * * * * *
88152 TTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCACGTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
*
88201 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * * *
88253 TTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
88302 TTTAAGACCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
** * * *
88354 TTTAAAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
88396 TTCTTCTCAT
Statistics
Matches: 635, Mismatches: 97, Indels: 72
0.79 0.12 0.09
Matches are distributed among these distances:
39 32 0.05
40 1 0.00
41 1 0.00
43 74 0.12
44 2 0.00
48 7 0.01
49 303 0.48
50 8 0.01
51 8 0.01
52 168 0.26
53 31 0.05
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
Found at i:87734 original size:92 final size:91
Alignment explanation
Indices: 87577--88334 Score: 552
Period size: 101 Copynumber: 7.9 Consensus size: 91
87567 GGCGTCTTCT
* * * *
87577 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAAACCAATATCG
87642 CTGGCCTTGAATCAGCACAGTGGCACC
65 CTGGCCTTGAATCAGCACAGTGGCACC
* * * *
87669 TTTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTGGCACCTTGTCTTTAAAACCCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAAA-CCAATATCG
*
87734 CTGGCCTTGAATCAGCACATTGG---C
65 CTGGCCTTGAATCAGCACAGTGGCACC
* * * * *
87758 -GTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGTCACCTTTGTCTTTAAGACCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAAACCAATATCG
* *
87822 TTGGCCTTGAATCAGCACATTGGCACC
65 CTGGCCTTGAATCAGCACAGTGGCACC
* * * * * ** *
87849 TTTAAGTTCAATGTCGTTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTTAGTCCAATATTG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAAACCAATATCG
* * *
87914 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
65 CTGGCCTTGAATCAGCACA-----G----TGGCACC
* * **
87950 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAAACCAATATCG
** * *
88015 CTGGCCTTGAATCAACATATTAGCACCTTTGTCATC
65 CTGGCCTTGAAT---C-----AGCA-CAGTGGCACC
** * ** *
88051 TTTAAGTCCAATGCCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAAACCAATATCG
* * * *
88116 CTGGCCTTGAATTAGCATATTGGCGCCTTTGTCATC
65 CTGGCCTTGAATCAGCACA-----G----TGGCACC
* * * * * **
88152 TTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCACGTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAAACCAATATCG
* * *
88217 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
65 CTGGCCTTGAATCAGCACA-----G----TGGCACC
* * * * *
88253 TTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAGTATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAAACCAATATCG
88318 CTGGCCTTGAATCAGCA
65 CTGGCCTTGAATCAGCA
88335 TATTGGCGCC
Statistics
Matches: 576, Mismatches: 56, Indels: 59
0.83 0.08 0.09
Matches are distributed among these distances:
88 67 0.12
89 12 0.02
91 13 0.02
92 137 0.24
93 4 0.01
101 338 0.59
104 1 0.00
109 4 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (91 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAAACCAATATCGC
TGGCCTTGAATCAGCACAGTGGCACC
Found at i:87887 original size:180 final size:180
Alignment explanation
Indices: 87579--88342 Score: 614
Period size: 202 Copynumber: 4.0 Consensus size: 180
87569 CGTCTTCTTT
*
87579 TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATATCGCT
*
87644 GGCCTTGAATCAGCACAGTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTGGC
66 GGCCTTGAATCAGCACAGTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGC
* *
87709 ACCTT-GTCTTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTGGCG
131 ACCTTCATCTTT-AAACCCAATATCGCTGGCCTTGAATCAGCACATTGGCG
* * * *
87759 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGTCACCTTTGTCTTTAAGACCAATATCGTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATATCGCT
* * *
87824 GGCCTTGAATCAGCACATTGGCACCTTTAAGTTCAATGTCGTTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACAGTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGC
* * ** * *
87889 ATCTTCATCTTTTAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGCCTTTG
131 ACCTTCATCTTTAAACCCAATATCGCTGGCCTTGAATCAGCACATT-G-G-C---G
* * * * * *
87945 TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
1 -------TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAA
** * * ** *
88010 TATCGCTGGCCTTGAATCAACATATTAGCACCTTTGTCATCTTTAAGTCCAATGCCGCTGGCCTT
59 TATCGCTGGCCTTGAAT---C-----AGCA-CAGTGGCACCTTTAAGTCCAATATCGTTGGCCTT
* ** * * *
88075 GAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATCGCTGGCCTTGAATTAGCATATTGGC
115 GAATCAGCATATTGGCACCTTCATCTTTAAACCCAATATCGCTGGCCTTGAATCAGCACATT-G-
88140 GCCTTTG
178 G-C---G
* * * * * * * * *
88147 TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCACGTTCATCTTTAAGTCCAA
1 -------TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAA
* * * * **
88212 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCACTGGCCTT
59 TATCGCTGGCCTTGAATCAGCACA-----G----TGGCACCTTTAAGTCCAATATCGTTGGCCTT
* * *
88277 GAATCAGCACATTGGCACCTTCATCTTTAAGA-CCAGTATCGCTGGCCTTGAATCAGCATATTGG
115 GAATCAGCATATTGGCACCTTCATCTTTAA-ACCCAATATCGCTGGCCTTGAATCAGCACATTGG
88341 CG
179 CG
88343 CCTTCGTCAT
Statistics
Matches: 502, Mismatches: 49, Indels: 50
0.84 0.08 0.08
Matches are distributed among these distances:
180 153 0.30
181 6 0.01
182 1 0.00
183 1 0.00
186 1 0.00
193 67 0.13
194 4 0.01
196 2 0.00
199 2 0.00
200 1 0.00
201 5 0.01
202 259 0.52
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.32
Consensus pattern (180 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATATCGCT
GGCCTTGAATCAGCACAGTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGC
ACCTTCATCTTTAAACCCAATATCGCTGGCCTTGAATCAGCACATTGGCG
Found at i:88023 original size:101 final size:101
Alignment explanation
Indices: 87848--88395 Score: 889
Period size: 101 Copynumber: 5.4 Consensus size: 101
87838 ACATTGGCAC
* * * * * *
87848 CTTTAAGTTCAATGTCGTTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTTAGTCCAATATT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
87913 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
87949 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* * *
88014 GCTGGCCTTGAATCAACATATTAGCACCTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
88050 CTTTAAGTCCAATGCCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
*
88115 GCTGGCCTTGAATTAGCATATTGGCGCCTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
88151 CTTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCACGTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
88216 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
88252 CTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAGTATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
*
88317 GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
** *
88353 CTTTAAAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 CTTT-AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
88396 TTCTTCTCAT
Statistics
Matches: 416, Mismatches: 30, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
101 382 0.92
102 34 0.08
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (101 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:88135 original size:202 final size:201
Alignment explanation
Indices: 87759--88395 Score: 903
Period size: 202 Copynumber: 3.2 Consensus size: 201
87749 CACATTGGCG
* * * ** * *
87759 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGTCACCTTTGTCTTTAAGACCAATATCGTT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
* * * * *
87824 GGCCTTGAAT--C-----AGCA-CATTGGCACCTTTAAGTTCAATGTCGTTGGCCTTGAATCAGC
66 GGCCTTGAATCACATATTAGCACCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGC
* * * *
87881 ATATTGGCATCTTCATCTTTTAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
131 ACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
87946 CATCTT
196 CATCTT
*
87952 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
*
88017 GGCCTTGAATCAACATATTAGCACCTTTGTCATCTTTAAGTCCAATGCCGCTGGCCTTGAATCAG
66 GGCCTTGAATC-ACATATTAGCACCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAG
* *
88082 CACATTGGCACCTTCATCTTTAAGTCTAATATCGCTGGCCTTGAATTAGCATATTGGCGCCTTTG
130 CACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTG
88147 TCATCTT
195 TCATCTT
* * * *
88154 TAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCACGTTCATCTTTAAGTCCAATATCGCT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
* * *
88219 GGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAG
66 GGCCTTGAATCA-CATATTAGCACCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAG
* * *
88284 CACATTGGCACCTTCATCTTTAAGACCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCG
130 CACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTG
88349 TCATCTT
195 TCATCTT
* *
88356 TAAAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 T-AAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
88396 TTCTTCTCAT
Statistics
Matches: 396, Mismatches: 37, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
193 67 0.17
196 1 0.00
201 5 0.01
202 290 0.73
203 33 0.08
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (201 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
GGCCTTGAATCACATATTAGCACCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGC
ACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
CATCTT
Found at i:89129 original size:13 final size:13
Alignment explanation
Indices: 89111--89167 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
89101 TTCAACAATT
89111 TGTATCGATACAA
1 TGTATCGATACAA
89124 TGTATCGATACATAA
1 TGTATCGATAC--AA
89139 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
*
89156 TGCATCGATACA
1 TGTATCGATACA
89168 TAAGTTTTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 22 0.59
15 2 0.05
17 2 0.05
19 11 0.30
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:89148 original size:19 final size:18
Alignment explanation
Indices: 89124--89186 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
89114 ATCGATACAA
89124 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
89143 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
*
89156 TGCATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
89175 TGTATCGATACA
1 TGTATCGATACA
89187 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:89151 original size:32 final size:32
Alignment explanation
Indices: 89110--89194 Score: 152
Period size: 32 Copynumber: 2.7 Consensus size: 32
89100 TTTCAACAAT
89110 TTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
* *
89142 TTGTATCGATACAATGCATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
89174 TTGTATCGATACAATGTATCG
1 TTGTATCGATACAATGTATCG
89195 CTACGAAGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:92820 original size:31 final size:31
Alignment explanation
Indices: 92779--92872 Score: 93
Period size: 31 Copynumber: 3.0 Consensus size: 31
92769 ATTGAGTATG
*
92779 TTATCGATACAATAAACATGTATCTG-TACAA
1 TTATCAATACAATAAACATGTATC-GATACAA
*
92810 TTATCAATACAATGAACATGTATCGATACAA
1 TTATCAATACAATAAACATGTATCGATACAA
* * *
92841 TGTATCGATGCAAAGTATA-ATGTATCGATACA
1 T-TATCAATAC-AA-TAAACATGTATCGATACA
92873 TCTAGATGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
30 1 0.02
31 28 0.53
32 7 0.13
33 15 0.28
34 2 0.04
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (31 bp):
TTATCAATACAATAAACATGTATCGATACAA
Found at i:94732 original size:17 final size:17
Alignment explanation
Indices: 94693--94731 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
94683 ATTATGTATC
94693 TATTTTATTTATTACTT
1 TATTTTATTTATTACTT
*
94710 TATTTTATTTATT-TTT
1 TATTTTATTTATTACTT
94726 TATTTT
1 TATTTT
94732 TTTTGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTATTTATTACTT
Found at i:95026 original size:21 final size:21
Alignment explanation
Indices: 95002--95041 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
94992 ATTAAAAAAG
95002 ATTTATATTTATTTTAATTCA
1 ATTTATATTTATTTTAATTCA
*
95023 ATTTTTATTTATTTTAATT
1 ATTTATATTTATTTTAATT
95042 ATGCGAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTATATTTATTTTAATTCA
Found at i:96155 original size:20 final size:21
Alignment explanation
Indices: 96118--96156 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
96108 TGCTGTTTTT
* *
96118 ATTTTTCTTTCTTTCTATTTC
1 ATTTTTCTTCCTTCCTATTTC
96139 ATTTTT-TTCCTTCCTATT
1 ATTTTTCTTCCTTCCTATT
96157 GCTATTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTTCTTCCTTCCTATTTC
Found at i:96226 original size:33 final size:33
Alignment explanation
Indices: 96189--96272 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
96179 ACTTTCTTTT
**
96189 GCTGTTTCATTTCTTTCT-CTTTATTGTGCTACA
1 GCTGTTTCATTTCTTTCTCCTTT-TAATGCTACA
*
96222 GCTGTTTCATTTTTTTCTCCTTTTAATGCTACA
1 GCTGTTTCATTTCTTTCTCCTTTTAATGCTACA
* *
96255 GCTATTTCGATTGCTTTC
1 GCTGTTTC-ATTTCTTTC
96273 AATTATTGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
33 32 0.74
34 11 0.26
ACGTcount: A:0.13, C:0.21, G:0.12, T:0.54
Consensus pattern (33 bp):
GCTGTTTCATTTCTTTCTCCTTTTAATGCTACA
Found at i:96648 original size:13 final size:14
Alignment explanation
Indices: 96625--96661 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
96615 AAGTAATTAT
96625 TATTATTTTATGTA
1 TATTATTTTATGTA
*
96639 TATT-TTTTATTTA
1 TATTATTTTATGTA
96652 -ATTATTTTAT
1 TATTATTTTAT
96662 ATTAAATAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 14 0.67
14 4 0.19
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
TATTATTTTATGTA
Found at i:97501 original size:18 final size:18
Alignment explanation
Indices: 97478--97512 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97468 ATAAAGAGAA
*
97478 AGAAACGAAATAGCAAAG
1 AGAAACGAAACAGCAAAG
97496 AGAAACGAAACAGCAAA
1 AGAAACGAAACAGCAAA
97513 AGGAAGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.14, G:0.20, T:0.03
Consensus pattern (18 bp):
AGAAACGAAACAGCAAAG
Found at i:97695 original size:7 final size:7
Alignment explanation
Indices: 97683--97720 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
97673 ATGGTTAGCT
97683 GAAAAAA
1 GAAAAAA
97690 GAAAAAA
1 GAAAAAA
97697 -AAAAAA
1 GAAAAAA
97703 GAAAAAA
1 GAAAAAA
*
97710 G-AGAAA
1 GAAAAAA
97716 GAAAA
1 GAAAA
97721 GGGAGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 11 0.41
7 16 0.59
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:97702 original size:13 final size:13
Alignment explanation
Indices: 97684--97720 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
97674 TGGTTAGCTG
97684 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
97697 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
* *
97710 GAGAAAGAAAA
1 AAAAAAGAAAA
97721 GGGAGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAA
Found at i:98029 original size:58 final size:58
Alignment explanation
Indices: 97939--98055 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
97929 GAAGATATGG
97939 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
1 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
97997 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
1 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
98055 G
1 G
98056 ACTTGGTTTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (58 bp):
GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
Found at i:99446 original size:12 final size:11
Alignment explanation
Indices: 99424--99499 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
99414 AGAGATAGAA
*
99424 GAGAGAGGAGG
1 GAGATAGGAGG
99435 GATGATAGGAGG
1 GA-GATAGGAGG
*
99447 AGAGACAGGA--
1 -GAGATAGGAGG
*
99457 GAGATAGTA--
1 GAGATAGGAGG
99466 GAGATAGGAGG
1 GAGATAGGAGG
99477 GATGATAGGAGG
1 GA-GATAGGAGG
*
99489 AGAGACAGGAG
1 -GAGATAGGAG
99500 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:99456 original size:24 final size:24
Alignment explanation
Indices: 99423--99508 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
99413 AAGAGATAGA
*
99423 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
99447 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
99465 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
99489 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
99509 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:99475 original size:42 final size:42
Alignment explanation
Indices: 99414--99532 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
99404 TAGCCCTCAA
*
99414 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
99456 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
99498 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
99533 GAGAGAAGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:104102 original size:58 final size:58
Alignment explanation
Indices: 104012--104128 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
104002 GAAGATATGG
104012 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
1 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
104070 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
1 GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
104128 G
1 G
104129 ACTTGGTTTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (58 bp):
GCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGT
Found at i:105816 original size:17 final size:17
Alignment explanation
Indices: 105795--105838 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
105785 TGATATTTTC
*
105795 AAAAAAAATTAAATAAAT
1 AAAATAAATT-AATAAAT
*
105813 AAAATAAAGTAATAAAT
1 AAAATAAATTAATAAAT
105830 AAAATAAAT
1 AAAATAAAT
105839 ACATAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (17 bp):
AAAATAAATTAATAAAT
Found at i:108773 original size:156 final size:153
Alignment explanation
Indices: 108452--109385 Score: 635
Period size: 156 Copynumber: 5.9 Consensus size: 153
108442 TAAGTTTAAG
* * * * * *
108452 AAAAATTATAAAAATGCCCCTATGGGATACTTTCGATGTAAAAGTACCTGA-TACCCCTAAAGGA
1 AAAAATTACAAAAATGCCCCTAAGGTATAC-TTCGATGTAAAAGTACCTCAGCAACCCTAAAGGA
* * * * * * *
108516 CTTAAAACGAATTTTAATTGGGATGAACCTACCCTAAATATCAACCTTTGGCATAAAAGCGAACC
65 CTTAAAAAGAA-TATAA-AGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTGGACC
* *
108581 CGGTGATGACCTAGGACTCGGTTC-T
128 CGGTGATAACCTAGGACTCGATTCTT
* * * *
108606 AGCAAAGTACAAAAATGCCCTTACAGGTATAACTTCGATGTAAAAGTACCCCAGCAACCCTAAAG
1 A-AAAATTACAAAAATGCCCCTA-AGGTAT-ACTTCGATGTAAAAGTACCTCAGCAACCCTAAAG
* * * ** * **
108671 GACTTCAAAAGACTATAGATGGGATGAACCTATCCTAAATGCCCACTTTTATCATAAAAGTGGAC
63 GACTTAAAAAGAATATA-AAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTGGAC
*
108736 CCGGTGACAACCTAGGACTCGATTCTT
127 CCGGTGATAACCTAGGACTCGATTCTT
* * * ** * *
108763 CAAAATTACAAAAATACCCCTATAGGTATACTTTTGACATAAAAGT-CTCTTAGCAACCCTAAAA
1 AAAAATTACAAAAATGCCCCTA-AGGTATAC-TTCGATGTAAAAGTAC-CTCAGCAACCCTAAAG
* * **
108827 GAATTAAAAAGAGGATAATAAAAGGG-TGAACCTATCCTAAATATCTACCTTTGGCATAAAAACG
63 GACTTAAAAAGA--AT-AT-AAAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTG
* * *
108891 GACTCGGTGATAACCTAGGACTCAATTCTA
124 GACCCGGTGATAACCTAGGACTCGATTCTT
** * * ** **
108921 AAAAATTATGAAAATACCCCTATAGGTATTCCTTCGAAATAAAAGTA--TCATGGCAATTCTAAA
1 AAAAATTACAAAAATGCCCCTA-AGGTA-TACTTCGATGTAAAAGTACCTCA--GCAACCCTAAA
* * * * * *
108984 GGACTTAAAAAGAGGATAATAAAAGCATGAAACAATCCTAAATATCTACCTTCGGCATAAAAGTG
62 GGACTTAAAAAGA--AT-ATAAAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTG
* ** *
109049 AACCTAGTGATAACCTAGGACTCGGTT-TT
124 GACCCGGTGATAACCTAGGACTCGATTCTT
* * * * * * * * *
109078 GAAAAATTACAAAAATGCCCTTAGGGGATACCTTCAATGTGAAAGTATCTCGGTACCCCTAAAGG
1 -AAAAATTACAAAAATGCCCCTAAGGTATA-CTTCGATGTAAAAGTACCTCAGCAACCCTAAAGG
* * * * * *
109143 ACTTAAAAAGGACTATCAAAGGGATGAACGTATCCTAAATACCCACCTTCGACATAAAAGTAGAC
64 ACTTAAAAA-GAATAT-AAAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTGGAC
** *
109208 CCAATGATAACCTAGGACTCGATTCTAAA
127 CCGGTGATAACCTAGGACTCGATTCT--T
** * * * * ** *
109237 AAAAATTTATGAAAATGCCCCTATAAG-ATACCTTTGACGTGAAAGTTTCTCAG-TACCCGTAAA
1 AAAAA-TTACAAAAATGCCCCTA-AGGTATA-CTTCGATGTAAAAGTACCTCAGCAACCC-TAAA
* * * * * * *
109300 GGACTTAAAAAGGACTATAAAATGAATGAACCTATCCTAAATACCCACGTTCGGCATAAAAGCGG
62 GGACTTAAAAA-GAATAT-AAAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTGG
* * *
109365 ACCCAGTGGTAACCTAAGACT
125 ACCCGGTGATAACCTAGGACT
109386 TGGTTTCGTA
Statistics
Matches: 618, Mismatches: 133, Indels: 53
0.77 0.17 0.07
Matches are distributed among these distances:
154 1 0.00
155 22 0.04
156 204 0.33
157 62 0.10
158 203 0.33
159 124 0.20
160 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (153 bp):
AAAAATTACAAAAATGCCCCTAAGGTATACTTCGATGTAAAAGTACCTCAGCAACCCTAAAGGAC
TTAAAAAGAATATAAAGGGATGAACCTATCCTAAATATCCACCTTTGGCATAAAAGTGGACCCGG
TGATAACCTAGGACTCGATTCTT
Found at i:108913 original size:158 final size:157
Alignment explanation
Indices: 108539--109239 Score: 539
Period size: 158 Copynumber: 4.5 Consensus size: 157
108529 TTAATTGGGA
* * * *
108539 TGAACCTACCCTAAATATCAACCTTTGGCATAAAAGCGAACCCGGTGATGACCTAGGACTCGGTT
1 TGAACCTATCCTAAATATCTACCTTTGGCATAAAAGCGAACCCGGTGATAACCTAGGACTCGATT
* * * * * ** **
108604 C-TAGCAAAGTACAAAAATGCCCTTACAGGTATAACTTCGATGTAAAAGTAC-CCCAGCAACCCT
66 CTTA-AAAATTACAAAAATACCCCTATAGGTAT-ACTTCGAAATAAAAGT-CTCATAGCAACCCT
* * * *
108667 AAAGGACTTCAAAAGA--CT-ATAGATGGG
128 AAAGGACTTAAAAAGAGGATAATAAAAGGG
** * * ** * * *
108694 ATGAACCTATCCTAAATGCCCACTTTTATCATAAAAGTGGACCCGGTGACAACCTAGGACTCGAT
1 -TGAACCTATCCTAAATATCTACCTTTGGCATAAAAGCGAACCCGGTGATAACCTAGGACTCGAT
* * * *
108759 TCTTCAAAATTACAAAAATACCCCTATAGGTATACTTTTGACATAAAAGTCTCTTAGCAACCCTA
65 TCTTAAAAATTACAAAAATACCCCTATAGGTATAC-TTCGAAATAAAAGTCTCATAGCAACCCTA
* *
108824 AAAGAATTAAAAAGAGGATAATAAAAGGG
129 AAGGACTTAAAAAGAGGATAATAAAAGGG
* * * *
108853 TGAACCTATCCTAAATATCTACCTTTGGCATAAAAACGGACTCGGTGATAACCTAGGACTCAATT
1 TGAACCTATCCTAAATATCTACCTTTGGCATAAAAGCGAACCCGGTGATAACCTAGGACTCGATT
* ** * * * **
108918 CTAAAAAATTATGAAAATACCCCTATAGGTATTCCTTCGAAATAAAAGTATCATGGCAATTCTAA
66 CTTAAAAATTACAAAAATACCCCTATAGGTA-TACTTCGAAATAAAAGTCTCATAGCAACCCTAA
**
108983 AGGACTTAAAAAGAGGATAATAAAAGCA
130 AGGACTTAAAAAGAGGATAATAAAAGGG
* * * * ** *
109011 TGAAACAATCCTAAATATCTACCTTCGGCATAAAAGTGAACCTAGTGATAACCTAGGACTCGGTT
1 TGAACCTATCCTAAATATCTACCTTTGGCATAAAAGCGAACCCGGTGATAACCTAGGACTCGATT
* * * * * * * *
109076 -TTGAAAAATTACAAAAAT-GCCCT-TAGGGGATACCTTC-AATGTGAAAGTATC-TCGGTACCC
66 CTT-AAAAATTACAAAAATACCCCTATA-GGTATA-CTTCGAA-ATAAAAGTCTCAT-AGCAACC
*
109136 CTAAAGGACTT-AAAA-AGGACT-ATCAAAGGG
126 CTAAAGGACTTAAAAAGAGGA-TAATAAAAGGG
* * * * * * **
109166 ATGAACGTATCCTAAATACCCACCTTCGACATAAAAG-TAGACCCAATGATAACCTAGGACTCGA
1 -TGAACCTATCCTAAATATCTACCTTTGGCATAAAAGCGA-ACCCGGTGATAACCTAGGACTCGA
*
109230 TTCTAAAAAA
64 TTCTTAAAAA
109240 AATTTATGAA
Statistics
Matches: 436, Mismatches: 93, Indels: 32
0.78 0.17 0.06
Matches are distributed among these distances:
155 14 0.03
156 180 0.41
157 37 0.08
158 196 0.45
159 9 0.02
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (157 bp):
TGAACCTATCCTAAATATCTACCTTTGGCATAAAAGCGAACCCGGTGATAACCTAGGACTCGATT
CTTAAAAATTACAAAAATACCCCTATAGGTATACTTCGAAATAAAAGTCTCATAGCAACCCTAAA
GGACTTAAAAAGAGGATAATAAAAGGG
Found at i:109402 original size:159 final size:157
Alignment explanation
Indices: 108538--109402 Score: 462
Period size: 158 Copynumber: 5.5 Consensus size: 157
108528 TTTAATTGGG
* * * * * * * * *
108538 ATGAACCTACCCTAAATATCAACCTTTGGCATAAAAGCGAACCCGGTGATGACCTAGGACTCGG-
1 ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
* * * * * * * * * * * * *
108602 TTC-TAGCAAA-GTACAAAAATGCCCTTACAGGTATAACTTCGATGTAAAAGTACCCCAGCAACC
66 TTCGTA-AAAATTTACAAAAATGCCCCTAGAAG-ATACCTTCAACGTGAAAGTATCTCAGTACCC
* ** *
108665 CTAAAGGACTTCAAAA-GACTATAGATGGG
129 CTAAAGGACTTAAAAAGGACTATA-AAAGA
* * *** * * * *
108694 ATGAACCTATCCTAAATGCCCACTTTTATCATAAAAGTGGACCCGGTGACAACCTAGGAC-TCGA
1 ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
* * * * * * ** * * * * * *
108758 TTCTTCAAAA-TTACAAAAATACCCCTATAGGTATACTTTTGACATAAAAGTCTCTTAGCAACCC
66 TTCGTAAAAATTTACAAAAATGCCCCTAGAAG-ATACCTTCAACGTGAAAGTATCTCAGTACCCC
* * *
108822 TAAAAGAATTAAAAAGAGGA-TAATAAAAGG
130 TAAAGGACTT-AAAA-AGGACT-ATAAAAGA
* * * * ** * * ***
108852 GTGAACCTATCCTAAATATCTACCTTTGGCATAAAAACGGACTCGGTGATAACCTAGGAC-TCAA
1 ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
* ** * * * * * * * * **
108916 TTC-TAAAAAATTATGAAAATACCCCTATAGGTATTCCTTCGAA-ATAAAAGTATCAT-GGCAAT
66 TTCGTAAAAATTTACAAAAATGCCCCTAGAAG-ATACCTTC-AACGTGAAAGTATC-TCAGTACC
* *
108978 TCTAAAGGACTTAAAAAGAGGA-TAATAAAAGC
128 CCTAAAGGACTT-AAAA-AGGACT-ATAAAAGA
* * * * * * *
109010 ATGAAACAATCCTAAATATCTACCTTCGGCATAAAAGTGAACCTAGTGATAACCTAGGACTCGGT
1 ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
* * ** * *
109075 TTTG-AAAAA-TTACAAAAATGCCCTTAGGGGATACCTTCAATGTGAAAGTATCTCGGTACCCCT
66 TTCGTAAAAATTTACAAAAATGCCCCTAGAAGATACCTTCAACGTGAAAGTATCTCAGTACCCCT
* *
109138 AAAGGACTTAAAAAGGACTATCAAAGGG
131 AAAGGACTTAAAAAGGACTAT-AAAAGA
* * * * * *
109166 ATGAACGTATCCTAAATACCCACCTTCGACATAAAAGTAGACCCAATGATAACCTAGGACTCGAT
1 ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
*** ** * ** * *
109231 TCTAAAAAAAATTTATGAAAATGCCCCTATAAGATACCTTTGACGTGAAAGTTTCTCAGTACCCG
66 T-TCGTAAAAATTTACAAAAATGCCCCTAGAAGATACCTTCAACGTGAAAGTATCTCAGTACCCC
109296 TAAAGGACTTAAAAAGGACTATAAAATGA
130 TAAAGGACTTAAAAAGGACTATAAAA-GA
* * * *
109325 ATGAACCTATCCTAAATACCCACGTTCGGCATAAAAGCGGACCCAGTGGTAACCTAAGACTTGGT
1 ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
109390 TTCGTAACAAATT
66 TTCGTAA-AAATT
109403 GGTGAGATGT
Statistics
Matches: 560, Mismatches: 129, Indels: 37
0.77 0.18 0.05
Matches are distributed among these distances:
155 7 0.01
156 171 0.31
157 40 0.07
158 203 0.36
159 139 0.25
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (157 bp):
ATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGGACCCAGTGATAACCTAGGACTTGGT
TTCGTAAAAATTTACAAAAATGCCCCTAGAAGATACCTTCAACGTGAAAGTATCTCAGTACCCCT
AAAGGACTTAAAAAGGACTATAAAAGA
Found at i:110114 original size:127 final size:129
Alignment explanation
Indices: 109947--110238 Score: 435
Period size: 127 Copynumber: 2.3 Consensus size: 129
109937 ATACAAAAAA
** * *
109947 TTTGAAATCTTTTAATACCCCTATAGATACCCATAAGAATATAAAACATTAAAAACGATTAATAT
1 TTTGAAATCTTTT-ATACCCCTACGGATACCCATAGGAATATAAAAAATTAAAAACGATTAATAT
* * *
110012 TTATTTATTTTTGGAAAA-AAATCATTTCGTACCTTAATAGATAC-CAAAAAGATATGAAAAGCT
65 TTATTTATGTTTAGAAAAGAAATCATTTCGTACCTCAATAGATACTCAAAAAGATATGAAAAGCT
* *
110075 TTTGAAATCTTTTATACACCTACGGATACCCATAGGAATATAAAAAATTAAAAATGATTAATATT
1 TTTGAAATCTTTTATACCCCTACGGATACCCATAGGAATATAAAAAATTAAAAACGATTAATATT
* ** *
110140 TATTTATGTTTAGAAAAGAAATCATTTCGTACCTCAATGGATACTTGAAAAGATATGAAAAGTT
66 TATTTATGTTTAGAAAAGAAATCATTTCGTACCTCAATAGATACTCAAAAAGATATGAAAAGCT
*
110204 TTTGAAATTTTTTATACCCCTACGGATACCCATAG
1 TTTGAAATCTTTTATACCCCTACGGATACCCATAG
110239 TGCCGCAACG
Statistics
Matches: 147, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
127 61 0.41
128 37 0.25
129 49 0.33
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (129 bp):
TTTGAAATCTTTTATACCCCTACGGATACCCATAGGAATATAAAAAATTAAAAACGATTAATATT
TATTTATGTTTAGAAAAGAAATCATTTCGTACCTCAATAGATACTCAAAAAGATATGAAAAGCT
Found at i:114411 original size:52 final size:52
Alignment explanation
Indices: 114333--114533 Score: 321
Period size: 52 Copynumber: 3.9 Consensus size: 52
114323 CGAAATATGA
114333 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
** *
114385 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACACCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
** *
114437 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
** *
114489 AAATTTGCCTGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACA
114534 ATGTATCGAT
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 138 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
Found at i:114540 original size:13 final size:13
Alignment explanation
Indices: 114522--114546 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114512 CAAAGATTAG
114522 TGTATCGATACAA
1 TGTATCGATACAA
114535 TGTATCGATACA
1 TGTATCGATACA
114547 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:114614 original size:20 final size:20
Alignment explanation
Indices: 114585--114642 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
114575 GCAGTAGCTT
114585 AAAT-TGTATCGATACAAAA
1 AAATATGTATCGATACAAAA
*
114604 AAATATGTATCGATACAACA
1 AAATATGTATCGATACAAAA
***
114624 CTTTATGTATCGATACAAA
1 AAATATGTATCGATACAAA
114643 TCATTGAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (20 bp):
AAATATGTATCGATACAAAA
Found at i:116231 original size:155 final size:155
Alignment explanation
Indices: 115700--116336 Score: 561
Period size: 155 Copynumber: 4.1 Consensus size: 155
115690 TTACTAACTG
* * * *
115700 GGATGAACCTATCCTAAATACCCACCTTTGGTATAAAAGTGAACTCGATGATGACCTAGGAGTTG
1 GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGAACCCGATGATGACCTAGAAGTTG
* * * * *
115765 GTTCT-TAAATTA-CAAAATACCCCTA-GGGGATACCTTCAACGTAGAAGTA-CTCGATACCCTT
66 GTTCTAAAAATTATCAAAATACCCTTATGGGGATACCTTCGACGCAAAAGTACCTCGATACCC-T
* * *
115826 AAAGGACTTTAAAAGAATTATACATT
130 AAAGGACTTAAAAAGAATTATAGATA
** * * *
115852 GGATGAACCTATCCTAAATACCCACCTTCGGCAT-AAAGCAAACCTGATAATAACCTAGGAA-TT
1 GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGAACCCGATGATGACCTA-GAAGTT
* * ** ** * * * *
115915 GGTTTTAAGAAATTACCACGACGCCCATATGGGTATACCTTCGAC-CTAAAAGTATCTCGGTATC
65 GGTTCTAA-AAATTATCAAAATACCCTTATGGGGATACCTTCGACGC-AAAAGTACCTCGATA-C
* *
115979 CCTAAAGGACTTAAAAAGGATTATAGAAA
127 CCTAAAGGACTTAAAAAGAATTATAGATA
* * * *
116008 GGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAG-CAGACCC-A-GCCATGACGTA-AGA
1 GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGA-ACCCGATG--ATGACCTAGA-A
* *
116069 GTTGGTTCTAGAAAATTATGAAAATACCCTTA-GGGGATACCTTCGACACAAAAGTACCT-GATA
62 GTTGGTTCTA-AAAATTATCAAAATACCCTTATGGGGATACCTTCGACGCAAAAGTACCTCGATA
* *
116132 CCCTTAAAGGACTTCAAAAGAATTATAGATG
126 CCC-TAAAGGACTTAAAAAGAATTATAGATA
* * * *
116163 GGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTGAACCCGGTGACT-ACCTAGAACTC
1 GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGAACCCGATGA-TGACCTAGAAGTT
* * * * * * *
116227 GGTTCTAGAAATTTATGAAAAT-GCCTTATGGGTATACTTTCGACGTAAAAGTATCTCGGCA-AC
65 GGTTCTA-AAAATTATCAAAATACCCTTATGGGGATACCTTCGACGCAAAAGTACCTC-G-ATAC
* * *
116290 CCTAAAGGACTTAAAAAG-ACTAGAGTTA
127 CCTAAAGGACTTAAAAAGAATTATAGATA
116318 GGATGAACCTATCCTAAAT
1 GGATGAACCTATCCTAAAT
116337 GCTTACTATC
Statistics
Matches: 391, Mismatches: 68, Indels: 49
0.77 0.13 0.10
Matches are distributed among these distances:
151 24 0.06
152 34 0.09
153 6 0.02
154 16 0.04
155 161 0.41
156 104 0.27
157 44 0.11
158 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (155 bp):
GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGAACCCGATGATGACCTAGAAGTTG
GTTCTAAAAATTATCAAAATACCCTTATGGGGATACCTTCGACGCAAAAGTACCTCGATACCCTA
AAGGACTTAAAAAGAATTATAGATA
Found at i:116260 original size:311 final size:306
Alignment explanation
Indices: 114938--116336 Score: 1044
Period size: 311 Copynumber: 4.6 Consensus size: 306
114928 ATATAAATAA
* * * * ** * * *
114938 GATGAACCTATCCTAAACGCCCACGTTTGGCATAAAAGCGGACCTGACAACAACCTAGGAGTTGG
1 GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTCGG
* * * * * *
115003 TTCTGGAAAATTACTAAAATGCCTCTA-GAGG-ATACCTTTGACGTAGAAGTACCT-GATACCCC
66 TTCTAG-AAATTA-TAAAATGCCT-TATG-GGTATACCTTCGACGTAAAAGTATCTCGGTAACCC
* * * *
115065 TAAAGTACTTAAAAAGGATATGGACGAGG-TGAACCTATCCTAGATACCTACCTTCGGCATAAAA
127 TAAAGGACTTAAAAA-GATATAGA-AAGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAA
* ** * ** * ** * * *
115129 GCAAACCCAGTGACAACCTAGGACTCAGTTCTAGATGTCACGAAAATGCCCTTAGGGGATACCTT
190 GCAGACCCA-TGATGACCTAGGAGTTGGTTCTAAAAATTACCAAAATACCCTTAGGGGATACCTT
* * * * * *
115194 CGACATAATAGTGCC-CAATACCCCTACAGGACTTAAAAAGGA-TATGGATGG
254 CGACATAAAAGTACCTCAATACCCTTAAAGGACTTAAAAAGAATTATAGATGG
* ** * *
115245 GGTGAACCTATCCTAAATGCCCA-CTTCAACAT--AAGCGGACCCGGTGATAACCTAGGACTCGA
1 GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTCGG
* * * * * * *
115307 TTCTAAGAAATTAAAAAAATACCCCTATAGGTATACCTTCGACATAAAAGTATCCCGGCAACCCT
66 TTCT-AGAAATT-ATAAAAT-GCCTTATGGGTATACCTTCGACGTAAAAGTATCTCGGTAACCCT
* * * *
115372 AAAGGACTTAAAAAAAGATTATAGAAGGGATAAACCTATCCTAAATA-TTCACCTTCAGCAT-AA
128 AAAGGACTT--AAAAAGA-TATAGAAAGGATGAACCTATCCTAAATACCT-ACCTTCGGCATAAA
* * * * *
115435 AGCGGACCCGATGATGACCTAGGAATTGGTTTTAAGAAATTACCAAAATGCCTCTGT-GGGTATA
189 AGCAGACCC-ATGATGACCTAGGAGTTGGTTCTAA-AAATTACCAAAATACC-CT-TAGGGGATA
* * * **
115499 CCTTCGACGTGAAAA-TATCTCAATATCCC-TAAAGGACTTAAAAAGGATTATAGAAAG
250 CCTTCGACAT-AAAAGTACCTCAATA-CCCTTAAAGGACTTAAAAAGAATTATAGATGG
* * * ** * ** * *
115556 GATTAACCCATTCTAAAAACCCACTTTCGAAATAAAAGCGGACCCGATGATAACCAAGGACTCGA
1 GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTCGG
* * * * * * * ** * *
115621 TTTTAAAAAATTACTAAAATGCCTCGA-GGGGATATCTTCGATGTAGAAGTGCCT-GATATCCCT
66 TTCT-AGAAATTA-TAAAATGCCT-TATGGGTATACCTTCGACGTAAAAGTATCTCGGTAACCCT
** * * * * *
115684 AAAGGA-TT-ACTA-A-CT-G---GGATGAACCTATCCTAAATACCCACCTTTGGTATAAAAG-T
128 AAAGGACTTAAAAAGATATAGAAAGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAGCA
* * * *
115740 GAACTCGATGATGACCTAGGAGTTGGTTCT-TAAATTA-CAAAATACCCCTAGGGGATACCTTCA
193 G-AC-CCATGATGACCTAGGAGTTGGTTCTAAAAATTACCAAAATACCCTTAGGGGATACCTTCG
* * * * * *
115803 ACGTAGAAGTA-CTCGATACCCTTAAAGGACTTTAAAAGAATTATACATTG
256 ACATAAAAGTACCTCAATACCCTTAAAGGACTTAAAAAGAATTATAGATGG
* ** * * * *
115853 GATGAACCTATCCTAAATACCCACCTTCGGCAT-AAAGCAAACCTGATAATAACCTAGGAATTGG
1 GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTCGG
* * ** * * * *
115917 TTTTAAGAAATTACCACGACGCCCATATGGGTATACCTTCGACCTAAAAGTATCTCGGTATCCCT
66 TTCT-AGAAATTA-TAAAATG-CCTTATGGGTATACCTTCGACGTAAAAGTATCTCGGTAACCCT
*
115982 AAAGGACTTAAAAAGGATTATAGAAAGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAG
128 AAAGGACTTAAAAA-GA-TATAGAAAGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAG
* * **
116047 CAGACCCA-GCCATGACGTAAGAGTTGGTTCTAGAAAATTATGAAAATACCCTTAGGGGATACCT
191 CAGACCCATG--ATGACCTAGGAGTTGGTTCTA-AAAATTACCAAAATACCCTTAGGGGATACCT
* * *
116111 TCGACACAAAAGTACCT-GATACCCTTAAAGGACTTCAAAAGAATTATAGATGG
253 TCGACATAAAAGTACCTCAATACCCTTAAAGGACTTAAAAAGAATTATAGATGG
* * * *
116164 GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTGAACCCGGTGACT-ACCTAGAACTCG
1 GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCCGATGA-TAACCTAGGACTCG
* *
116228 GTTCTAGAAATTTATGAAAATGCCTTATGGGTATACTTTCGACGTAAAAGTATCTCGGCAACCCT
65 GTTCTAGAAA-TTAT-AAAATGCCTTATGGGTATACCTTCGACGTAAAAGTATCTCGGTAACCCT
* **
116293 AAAGGACTTAAAAAGACTAGAGTTAGGATGAACCTATCCTAAAT
128 AAAGGACTTAAAAAGA-TATAGAAAGGATGAACCTATCCTAAAT
116337 GCTTACTATC
Statistics
Matches: 852, Mismatches: 185, Indels: 107
0.74 0.16 0.09
Matches are distributed among these distances:
296 43 0.05
297 81 0.10
298 32 0.04
299 10 0.01
300 8 0.01
301 28 0.03
302 28 0.03
303 1 0.00
304 42 0.05
305 24 0.03
306 20 0.02
307 55 0.06
308 105 0.12
309 20 0.02
310 58 0.07
311 181 0.21
312 50 0.06
313 22 0.03
314 44 0.05
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (306 bp):
GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTCGG
TTCTAGAAATTATAAAATGCCTTATGGGTATACCTTCGACGTAAAAGTATCTCGGTAACCCTAAA
GGACTTAAAAAGATATAGAAAGGATGAACCTATCCTAAATACCTACCTTCGGCATAAAAGCAGAC
CCATGATGACCTAGGAGTTGGTTCTAAAAATTACCAAAATACCCTTAGGGGATACCTTCGACATA
AAAGTACCTCAATACCCTTAAAGGACTTAAAAAGAATTATAGATGG
Found at i:117619 original size:13 final size:13
Alignment explanation
Indices: 117601--117627 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
117591 GGATTTTTGT
117601 AAAATGTTTGGAA
1 AAAATGTTTGGAA
117614 AAAATGTTTGGAA
1 AAAATGTTTGGAA
117627 A
1 A
117628 TTTTGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (13 bp):
AAAATGTTTGGAA
Found at i:119540 original size:20 final size:20
Alignment explanation
Indices: 119485--119542 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
119475 CAAAAACCCA
* * *
119485 AAATTTATCGATACAATGAG
1 AAATTTATCGATACATTTAC
*
119505 AAATGTATCGATACATTTAC
1 AAATTTATCGATACATTTAC
*
119525 TAATTTATCGATACATTT
1 AAATTTATCGATACATTT
119543 CCTTGGTAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (20 bp):
AAATTTATCGATACATTTAC
Found at i:121511 original size:20 final size:20
Alignment explanation
Indices: 121486--121539 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
121476 AAAACCCCTA
121486 AAAGTATCGATACACAATTC
1 AAAGTATCGATACACAATTC
121506 AAAGTATCGATACACAATTC
1 AAAGTATCGATACACAATTC
121526 AAAGTATCGATACA
1 AAAGTATCGATACA
121540 TGTTGCAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.24
Consensus pattern (20 bp):
AAAGTATCGATACACAATTC
Found at i:121552 original size:20 final size:20
Alignment explanation
Indices: 121529--121601 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
121519 ACAATTCAAA
121529 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
121549 GTATCGATACATGAAAAATAT
1 GTATCGATACATGTTGCA-AT
121570 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
121590 GTATCGATACAT
1 GTATCGATACAT
121602 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:121573 original size:21 final size:20
Alignment explanation
Indices: 121546--121622 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
121536 TACATGTTGC
121546 AATGTATCGATACATGAAAA
1 AATGTATCGATACATGAAAA
****
121566 ATATGTATCGATACATGTTGC
1 A-ATGTATCGATACATGAAAA
*
121587 AATGTATCGATACATAAAAA
1 AATGTATCGATACATGAAAA
121607 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
121623 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:121580 original size:41 final size:41
Alignment explanation
Indices: 121529--121622 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
121519 ACAATTCAAA
* *
121529 GTATCGATACATGTTGCAATGTATCGATACATGAAAAATAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
121570 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
121611 GTATCGATACAT
1 GTATCGATACAT
121623 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:121679 original size:13 final size:13
Alignment explanation
Indices: 121661--121686 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121651 TACAGCAAGT
121661 ATGTATCGATACA
1 ATGTATCGATACA
121674 ATGTATCGATACA
1 ATGTATCGATACA
121687 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:125767 original size:15 final size:15
Alignment explanation
Indices: 125747--125777 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
125737 TAAAAATGTC
*
125747 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
125762 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
125777 C
1 C
125778 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:127875 original size:13 final size:13
Alignment explanation
Indices: 127857--127894 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
127847 CATTTTTATT
127857 TGTATCGATACAA
1 TGTATCGATACAA
*
127870 TGTATCGATACAC
1 TGTATCGATACAA
127883 TGTATCGATACA
1 TGTATCGATACA
127895 GGGTGTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:130359 original size:20 final size:20
Alignment explanation
Indices: 130336--130408 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
130326 ACAATTCAAA
130336 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
130356 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
130377 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
130397 GTATCGATACAT
1 GTATCGATACAT
130409 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:130380 original size:21 final size:21
Alignment explanation
Indices: 130354--130429 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
130344 ACATGTTGCA
130354 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
130375 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
130395 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
130416 ATGTATCGATACAT
1 ATGTATCGATACAT
130430 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:130387 original size:41 final size:41
Alignment explanation
Indices: 130336--130429 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
130326 ACAATTCAAA
*
130336 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
130377 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
130418 GTATCGATACAT
1 GTATCGATACAT
130430 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:130486 original size:13 final size:13
Alignment explanation
Indices: 130468--130493 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
130458 TACAGCAAGT
130468 ATGTATCGATACA
1 ATGTATCGATACA
130481 ATGTATCGATACA
1 ATGTATCGATACA
130494 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:134227 original size:17 final size:15
Alignment explanation
Indices: 134207--134257 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
134197 TTAGGTAAAA
134207 AAGAAAGAAAGAAGATG
1 AAGAAAGAAAGAA-A-G
134224 AAG-AAGAAAGAAAG
1 AAGAAAGAAAGAAAG
* *
134238 AA-AAAGAAAAAAAA
1 AAGAAAGAAAGAAAG
134252 AAGAAA
1 AAGAAA
134258 AAATATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 14 0.47
15 4 0.13
16 9 0.30
17 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
AAGAAAGAAAGAAAG
Found at i:134258 original size:17 final size:17
Alignment explanation
Indices: 134204--134259 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
134194 AAGTTAGGTA
* *
134204 AAAAAGAAAGAAAGAAG
1 AAAAAGAAAAAAAAAAG
** * *
134221 ATGAAGAAGAAAGAAAG
1 AAAAAGAAAAAAAAAAG
134238 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
134255 AAAAA
1 AAAAA
134260 ATATGAAAGG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:138111 original size:24 final size:25
Alignment explanation
Indices: 138063--138113 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
138053 ACTGCTGTTG
** *
138063 CTTGCTATTTTTTTTATTTTTCTTT
1 CTTGCTATTTCATTTATTTTCCTTT
138088 CTTGCTATTTCATTT-TTTTCCTTT
1 CTTGCTATTTCATTTATTTTCCTTT
138112 CT
1 CT
138114 ATTGCTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.08, C:0.18, G:0.04, T:0.71
Consensus pattern (25 bp):
CTTGCTATTTCATTTATTTTCCTTT
Found at i:138115 original size:20 final size:21
Alignment explanation
Indices: 138078--138116 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
138068 TATTTTTTTT
*
138078 ATTTTTCTTTCTTGCTATTTC
1 ATTTTTCTTCCTTGCTATTTC
*
138099 ATTTTT-TTCCTTTCTATT
1 ATTTTTCTTCCTTGCTATT
138117 GCTGTTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.69
Consensus pattern (21 bp):
ATTTTTCTTCCTTGCTATTTC
Found at i:138167 original size:18 final size:18
Alignment explanation
Indices: 138146--138180 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
138136 TATTCTTCCT
*
138146 TTTGCTGTTTCGTTTTTC
1 TTTGCTGTTTCATTTTTC
138164 TTTGCTGTTTCATTTTT
1 TTTGCTGTTTCATTTTT
138181 TTCTCTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.14, G:0.14, T:0.69
Consensus pattern (18 bp):
TTTGCTGTTTCATTTTTC
Done.