Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold179
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2991183
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.31
Warning! 65816 characters in sequence are not A, C, G, or T
File 15 of 18
Found at i:2154339 original size:9 final size:9
Alignment explanation
Indices: 2154325--2154427 Score: 92
Period size: 9 Copynumber: 12.1 Consensus size: 9
2154315 CTCTGTCTAT
2154325 TATCTCTCC
1 TATCTCTCC
2154334 TATCTCTCC
1 TATCTCTCC
* *
2154343 T-CCTAT-C
1 TATCTCTCC
*
2154350 -ATCCCTCC
1 TATCTCTCC
*
2154358 TATCTCTAC
1 TATCTCTCC
2154367 TATCTCTCC
1 TATCTCTCC
2154376 TATCTCTCC
1 TATCTCTCC
* *
2154385 T-CCTAT-C
1 TATCTCTCC
*
2154392 -ATCCCTCC
1 TATCTCTCC
*
2154400 TATCTCTAC
1 TATCTCTCC
2154409 TATCTCTCC
1 TATCTCTCC
2154418 TATCTCTCC
1 TATCTCTCC
2154427 T
1 T
2154428 CCTATCATCC
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
7 6 0.08
8 8 0.11
9 58 0.81
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.42
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2154345 original size:12 final size:12
Alignment explanation
Indices: 2154330--2154448 Score: 88
Period size: 12 Copynumber: 10.9 Consensus size: 12
2154320 TCTATTATCT
2154330 CTCCTATCTCTC
1 CTCCTATCTCTC
2154342 CTCCTATCATC-C
1 CTCCTATC-TCTC
2154354 CTCCTA--TCT-
1 CTCCTATCTCTC
*
2154363 CTACTA--TCT-
1 CTCCTATCTCTC
2154372 CTCCTATCTCTC
1 CTCCTATCTCTC
2154384 CTCCTATCATC-C
1 CTCCTATC-TCTC
2154396 CTCCTA--TCT-
1 CTCCTATCTCTC
*
2154405 CTACTA--TCT-
1 CTCCTATCTCTC
2154414 CTCCTATCTCTC
1 CTCCTATCTCTC
2154426 CTCCTATCATC-C
1 CTCCTATC-TCTC
2154438 CTCCTATCTCT
1 CTCCTATCTCT
2154449 TTTTTCTCTT
Statistics
Matches: 91, Mismatches: 4, Indels: 24
0.76 0.03 0.20
Matches are distributed among these distances:
9 30 0.33
11 8 0.09
12 47 0.52
13 6 0.07
ACGTcount: A:0.13, C:0.46, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2154457 original size:42 final size:42
Alignment explanation
Indices: 2154297--2154448 Score: 268
Period size: 42 Copynumber: 3.6 Consensus size: 42
2154287 ATCTTCTCTC
* * * *
2154297 CTCCTCCTGTCATCCCTCCTCTGTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
2154339 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
2154381 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
2154423 CTCCTCCTATCATCCCTCCTATCTCT
1 CTCCTCCTATCATCCCTCCTATCTCT
2154449 TTTTTCTCTT
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 106 1.00
ACGTcount: A:0.12, C:0.45, G:0.01, T:0.41
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:2157452 original size:12 final size:11
Alignment explanation
Indices: 2157430--2157505 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2157420 AGAGAAAGAA
*
2157430 GAGAGAGGAGG
1 GAGATAGGAGG
2157441 GATGATAGGAGG
1 GA-GATAGGAGG
*
2157453 AGAGACAGGA--
1 -GAGATAGGAGG
*
2157463 GAGATAGTA--
1 GAGATAGGAGG
2157472 GAGATAGGAGG
1 GAGATAGGAGG
2157483 GATGATAGGAGG
1 GA-GATAGGAGG
*
2157495 AGAGACAGGAG
1 -GAGATAGGAG
2157506 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2157462 original size:24 final size:24
Alignment explanation
Indices: 2157429--2157514 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2157419 AAGAGAAAGA
*
2157429 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2157453 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2157471 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2157495 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2157515 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2157481 original size:42 final size:42
Alignment explanation
Indices: 2157420--2157538 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2157410 TAGCCCTCAA
* *
2157420 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2157462 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2157504 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2157539 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2163018 original size:43 final size:43
Alignment explanation
Indices: 2162970--2163066 Score: 176
Period size: 43 Copynumber: 2.3 Consensus size: 43
2162960 CTGATTTTTC
2162970 TCTTCACTTTTGTTTTCACTCTCATCATTCTCACTTGTAAGTA
1 TCTTCACTTTTGTTTTCACTCTCATCATTCTCACTTGTAAGTA
*
2163013 TCTTCACTTTTGTTTTCACTCTCATCTTTCTCACTTGTAAGTA
1 TCTTCACTTTTGTTTTCACTCTCATCATTCTCACTTGTAAGTA
*
2163056 TCTACACTTTT
1 TCTTCACTTTT
2163067 TCCCTTTTCT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.18, C:0.26, G:0.06, T:0.51
Consensus pattern (43 bp):
TCTTCACTTTTGTTTTCACTCTCATCATTCTCACTTGTAAGTA
Found at i:2165238 original size:3 final size:3
Alignment explanation
Indices: 2165232--2165309 Score: 52
Period size: 3 Copynumber: 25.7 Consensus size: 3
2165222 TTTGTATTCT
* * *
2165232 TTC TTC TTTC TT- TTC TTT TTG TT- TTC TTTC TTC TTC TTC TTC CTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC
* * * *
2165277 TTT TTC GTA TTC TTTC TTC TTT TTC TTC TTC TT
1 TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TT
2165310 TTGGTGAAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 4 0.07
3 45 0.78
4 9 0.16
ACGTcount: A:0.01, C:0.24, G:0.03, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:2165245 original size:31 final size:31
Alignment explanation
Indices: 2165210--2165311 Score: 99
Period size: 31 Copynumber: 3.4 Consensus size: 31
2165200 TTTTTTTTTC
2165210 CTTTTTTCTTTTTTTGTATTCTTTCTTCTTT
1 CTTTTTTCTTTTTTTGTATTCTTTCTTCTTT
*
2165241 C--TTTTC--TTTTTGTTTTCTTTCTTC-TT
1 CTTTTTTCTTTTTTTGTATTCTTTCTTCTTT
* * *
2165267 CTTCTTCCTCTTTTTCGTATTCTTTCTTCTTT
1 CTTTTTTCT-TTTTTTGTATTCTTTCTTCTTT
2165299 -TTCTTCTTCTTTT
1 CTT-TT-TTCTTTT
2165312 GGTGAAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
26 3 0.05
27 17 0.30
28 3 0.05
29 5 0.09
31 19 0.34
32 6 0.11
33 3 0.05
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.74
Consensus pattern (31 bp):
CTTTTTTCTTTTTTTGTATTCTTTCTTCTTT
Found at i:2165250 original size:27 final size:28
Alignment explanation
Indices: 2165210--2165306 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
2165200 TTTTTTTTTC
*
2165210 CTTTTTTCTT-TTTTTGTATTCTTTCTT
1 CTTTCTTCTTCTTTTTGTATTCTTTCTT
*
2165237 CTTTCTT-TTCTTTTTGTTTTCTTTCTT
1 CTTTCTTCTTCTTTTTGTATTCTTTCTT
*
2165264 CTTCTTCTTCCTCTTTTTCGTATTCTTTCTT
1 C-T-TTCTTCTTCTTTTT-GTATTCTTTCTT
2165295 CTTT-TTCTTCTT
1 CTTTCTTCTTCTT
2165307 CTTTTGGTGA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 23 0.38
28 8 0.13
29 7 0.12
30 8 0.13
31 12 0.20
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.73
Consensus pattern (28 bp):
CTTTCTTCTTCTTTTTGTATTCTTTCTT
Found at i:2165311 original size:12 final size:12
Alignment explanation
Indices: 2165232--2165311 Score: 65
Period size: 12 Copynumber: 6.6 Consensus size: 12
2165222 TTTGTATTCT
2165232 TTCTTCTTTCTT-
1 TTCTT-TTTCTTC
*
2165244 TTCTTTTTGTT-
1 TTCTTTTTCTTC
2165255 TTCTTTCTTCTTC
1 TTCTTT-TTCTTC
** *
2165268 TTCTTCCTCTTT
1 TTCTTTTTCTTC
* *
2165280 TTCGTATTCTTTC
1 TTCTTTTTC-TTC
2165293 TTCTTTTTCTTC
1 TTCTTTTTCTTC
2165305 TTCTTTT
1 TTCTTTT
2165312 GGTGAAAAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
11 11 0.20
12 29 0.54
13 14 0.26
ACGTcount: A:0.01, C:0.24, G:0.03, T:0.72
Consensus pattern (12 bp):
TTCTTTTTCTTC
Found at i:2175704 original size:42 final size:42
Alignment explanation
Indices: 2175649--2175767 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2175639 TTCTTCTCTC
* *
2175649 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2175691 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2175733 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2175768 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2175708 original size:12 final size:11
Alignment explanation
Indices: 2175682--2175757 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2175672 TCTATTATCT
*
2175682 CTCCTGTCTCTC
1 CTCCTATCTC-C
2175694 CTCCTATCATCC
1 CTCCTATC-TCC
2175706 CTCCTATCT--
1 CTCCTATCTCC
*
2175715 CTACTATCT--
1 CTCCTATCTCC
*
2175724 CTCCTGTCTCTC
1 CTCCTATCTC-C
2175736 CTCCTATCATCC
1 CTCCTATC-TCC
*
2175748 CTCCTCTCTC
1 CTCCTATCTC
2175758 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2175709 original size:24 final size:24
Alignment explanation
Indices: 2175673--2175758 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2175663 CCTCCTCTCT
* *
2175673 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2175697 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2175718 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2175739 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2175759 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2175733 original size:18 final size:18
Alignment explanation
Indices: 2175664--2175734 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2175654 CCTGTCATCC
* *
2175664 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2175682 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2175704 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2175724 CTCCTGTCTCT
1 CTCCTGTCTCT
2175735 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2179093 original size:18 final size:18
Alignment explanation
Indices: 2179070--2179134 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
2179060 ATCTTCTTCT
2179070 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
2179088 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
2179109 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
2179130 CTCCT
1 CTCCT
2179135 ATCTCTACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 2 0.05
20 2 0.05
21 4 0.11
22 2 0.05
23 2 0.05
24 7 0.19
25 3 0.08
ACGTcount: A:0.09, C:0.49, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:2179125 original size:42 final size:42
Alignment explanation
Indices: 2179073--2179191 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2179063 TTCTTCTCTC
*
2179073 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2179115 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
2179157 CTTCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2179192 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2179157 original size:18 final size:18
Alignment explanation
Indices: 2179088--2179158 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2179078 CCTATCATCC
* *
2179088 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2179106 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2179128 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2179148 CTCCTGTCTCT
1 CTCCTGTCTCT
2179159 TCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2184846 original size:159 final size:158
Alignment explanation
Indices: 2184066--2186066 Score: 840
Period size: 159 Copynumber: 12.8 Consensus size: 158
2184056 GGATCACATC
* ** *
2184066 AAAAGC-TTTCTTGCAAAACCAAAGCATCAATGTCATGAATCCCAATGAGGAAAAT-GTGTTTAT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAG-GTTTAT
* *** * * * **
2184129 AGTGCCTAATTGTGAAAAAAATGAAGATTATTATGAGAATCCATGTTTATCTCAATTGATGGATG
65 AGTGCCCAATCAAG-AAAAAATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATGGATG
* * * *
2184194 AAGTTTGATTCCAA-AAAAATAGTTGAAAG
129 AACTTTGATTCTAAGAAAAATGGTGGAAAG
* * * ** ** * *
2184223 AAAAGTTTTTCCTATG--ATACCAAAGTATCAATATTGTGTTTCTTAATGAGAAGAATACGTTTA
1 AAAAGCTTTT-CT-TGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAGGTTTA
* * * * * * * *
2184286 T-GATGCCTAATCTCA-AAAAAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTGAAGGA
64 TAG-TGCCCAATC-AAGAAAAAATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATGGA
* *
2184349 CGAAC---GATTCTAATG-AAAATGAG-GGAAGG
127 TGAACTTTGATTCTAA-GAAAAATG-GTGGAAAG
** * * * * *
2184378 AAAAGCTTTTCTTGCAAAAATAAAGACATCAATATCGTGTATCCTAATGA-GA-AGTACGTCATT
1 AAAAGCTTTTCTTGCAAAACCAAAG-CATCAATATCATGTTTCCCAATGAGGAGAATAGGT--TT
* * * * * * * * * *
2184441 -TTGTTGTCGAATCATGAAAGGAATGGAGATTATTA-TATCAATCCAT-TCTTGTCTCATTTGAG
63 ATAG-TGCCCAATCAAGAAA-AAATGGAGATTATTACGA-GAATCCATAT-TTGCCTCAATTGAT
*
2184503 GGATGAACTTTGATTCTACG-AAAATCGGTGGAAAG
124 GGATGAACTTTGATTCTAAGAAAAAT-GGTGGAAAG
* ** * ** * *
2184538 GAAAGC-TTTCTTATAAAACCAAAGGATCAATATTGTGTATCCCAATGAGGA-AAAAGTGTTTAT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAG-GTTTAT
* * * * * * * ** * * **
2184601 GGTTCCTAATCCCA-AAGAGATCAGAGATTATTATAAGGATCCA-AGTTTGTCTTGATTGATGGA
65 AGTGCCCAAT-CAAGAAAAAAT-GGAGATTATTACGAGAATCCATA-TTTGCCTCAATTGATGGA
* *
2184664 TGAACTTTGATTCT-AGTGAAAATGGTGGGAAG
127 TGAACTTTGATTCTAAG-AAAAATGGTGGAAAG
* * * * *
2184696 AAAAACTTTTCCTGCAAAAGCAAAGCATCAATATTATGTTTCCTAATGAGGAGAATAGGTTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAGGTTTATA
*** * * * ** *
2184761 GTGCCCAATTGTGAAAAGACTGGGGATTATTACGACAATTTATATTTGCCTCAATTAATGGATGA
66 GTGCCCAATCAAGAAAA-AATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATGGATGA
2184826 ACTTTGATTCTAAGAAAAATGAG-GGAAAG
130 ACTTTGATTCTAAGAAAAATG-GTGGAAAG
** * * *
2184855 AAAAGCTTTTCTTGTGAAACCAAAGTATCAATATCTTGTATT-CCAAT-AAG-GAATATGTGTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-TTCCCAATGAGGAGAATA-G-GTTT
* * * * * *
2184917 -TTGTTGCCGAATCAAGAAACAAATTGAGATTATTACGATAATCCATGTTTGCCTCATTTGA-GA
63 ATAG-TGCCCAATCAAGAAA-AAATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATG-
* *
2184980 GATGAACTTTGATTCTAAGGAAAGTGGTGGAAAG
125 GATGAACTTTGATTCTAAGAAAAATGGTGGAAAG
** * * * * * * **
2185014 AAGTGC-TTTCTTGCAAAACCAAAGAATCAATATCATGTATCCCACTAAGAAAAATTTGTTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAGGTTTATA
* * * * * ** *
2185078 GTGGCCAATCAAGAATAAAGTGGAG-TTATTACAAGAATCCATGTTTGTCTTGACTGATGGAT-A
66 GTGCCCAATCAAGAA-AAAATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATGGATGA
* *
2185141 AGCTTTGATTC-CA-AAAAATGGTGAAAAG
130 A-CTTTGATTCTAAGAAAAATGGTGGAAAG
* * * *
2185169 AAAAGCTTTT-TTAGCAAAAGCAAAGCATCAATATCATGTTTCCTAATGATGAG-ATTGGATTTA
1 AAAAGCTTTTCTT-GCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAGG-TTTA
* * * * * * *
2185232 TGGTGCCCAATCATGAAAATAATGGTA-ATTATTATGAGAATCCACATTTGTCTCATTTGATTGA
64 TAGTGCCCAATCAAGAAAA-AATGG-AGATTATTACGAGAATCCATATTTGCCTCAATTGATGGA
* *
2185296 -CAAC-TTGATTCTAAGGAAAAATGGGGGAAAG
127 TGAACTTTGATTCTAA-GAAAAATGGTGGAAAG
* * * ** *
2185327 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAT-TTGTCCCAATGAGGAGTACATTTTTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTT-TCCCAATGAGGAGAATAGGTTTAT
** * * * ** * *
2185391 CTTG---AATCACA-AAAGATTGGAGATTATTAGGTCAATCC--ATTTGTCTTTCACTTG-TGGG
65 AGTGCCCAATCA-AGAAAAAATGGAGATTATTACGAGAATCCATATTTG-C-CTCAATTGAT-GG
* *
2185449 ACGAACTTTGATTCTAAGGAAAATGGTGGAAAG
126 ATGAACTTTGATTCTAAGAAAAATGGTGGAAAG
* * * ** *
2185482 -AAAGC---T-TT---------AAGCATCAATATCATGTATCCTAATAAAAAGTAT-GTGTTT-T
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAG-GTTTAT
* ** * * * * *** * * *
2185531 TGTTATCGAATCATGAAAAAAATGGAGATTGTTATGTCTATCCATGTTTGTCTC-ATTCGATAGA
65 AG-TGCCCAATCAAG-AAAAAATGGAGATTATTACGAGAATCCATATTTGCCTCAATT-GATGGA
* * * *
2185595 TGAACTTTGATTCTAAGGATAATGGTGAAAAT
127 TGAACTTTGATTCTAAGAAAAATGGTGGAAAG
* * * *
2185627 AAAAGCTTTTCTTTCAAAACGAAAGCATCAATATCATGTATCCCAATGA-G-GAATATGCTTT-T
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATA-GGTTTAT
*** * * * ** * * ** ***
2185689 AGGGTGCCCAATTGTGAAAATAGTGGATATTACTATAAGAATCCATGTTTGTCTTGATTGACAAA
65 A--GTGCCCAATCAAGAAAA-AATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATGGA
* *
2185754 TGAACTTTGATTCTAGGGAAAATGGTGGAAAG
127 TGAACTTTGATTCTAAGAAAAATGGTGGAAAG
* * * * *
2185786 AAAAGC-TTTCTTGCAAAATCAAAGCATCTATATCATGCATAT-CTATTG-GGAGAA-ATGTGTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATG--TTTCCCAATGAGGAGAATA-G-GTT
* * * ** * * * * * * *
2185847 TATGGCGCCTAATCTTGAAAAGAGTGTAGATTATTACCAAAATCCATGTTTGTCTCGATT-ATTG
62 TATAGTGCCCAATCAAGAAAA-AATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGA-TG
* * *
2185911 AATGAACTTTGATTCTAAGAAAAATAGT-TAGAAG
125 GATGAACTTTGATTCTAAGAAAAATGGTGGA-AAG
* * * ** ** * * *
2185945 AAAAACTTTTCCTACAAAACCAAAGCATCAATATTGTGTTTCTTAATAAAGA-AACAGGTTT-TA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAGGTTTATA
* * * * * * * *
2186008 CTGACCAATCATGTAAAGAATGGAGATTATTATGAGAATCCAAATTTGTCTCATTTGAT
66 GTGCCCAATCAAG-AAAAAATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGAT
2186067 TGACAAATTT
Statistics
Matches: 1396, Mismatches: 327, Indels: 242
0.71 0.17 0.12
Matches are distributed among these distances:
140 1 0.00
141 30 0.02
142 1 0.00
144 7 0.01
145 55 0.04
146 6 0.00
147 4 0.00
149 1 0.00
150 4 0.00
151 1 0.00
152 5 0.00
153 4 0.00
154 45 0.03
155 82 0.06
156 107 0.08
157 212 0.15
158 301 0.22
159 451 0.32
160 78 0.06
161 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (158 bp):
AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTTTCCCAATGAGGAGAATAGGTTTATA
GTGCCCAATCAAGAAAAAATGGAGATTATTACGAGAATCCATATTTGCCTCAATTGATGGATGAA
CTTTGATTCTAAGAAAAATGGTGGAAAG
Found at i:2185012 original size:476 final size:472
Alignment explanation
Indices: 2184069--2185361 Score: 1141
Period size: 473 Copynumber: 2.7 Consensus size: 472
2184059 TCACATCAAA
* * * * * *
2184069 AGCTTTCTTGCAAAACCAAAGCATCAATGTCATGAATCCCAATGAGGAAAATGTGTTTATAGT-G
1 AGCTTTCTTACAAAACCAAAGAATCAATATCATGTATCCCAATAAGAAAAATGTGTTTATAGTGG
*** * * ** * * ** *
2184133 CCTAATTGTGAAAAAAAT-GAAGATTATTATGAGAATCCATGTTTATCTCAATTGATGGATGAAG
66 CC-AATCAAGAATAAAGTAG-AG-TTATTACAAGAATCCAAGTTTGTCTTGACTGATGGAT-AAG
* ** * * * *
2184197 -TTTGATTCCAAAAAAATAGTTG-AAAGAAAAGTTTTTCCTATG--ATACCAAAGTATCAATATT
127 CTTTGATTCC-AAAAAAT-GGTGAAAAGAAAAACTTTT-CTA-GCAAAAGCAAAGCATCAATATC
* * * * * * *
2184258 GTGTTTCTTAATGAGAAGAATACG-TTTAT-GATGCCTAATC-TCAAAAAAAT-GGAGATTATTA
188 ATGTTTCCTAATGAGGAG-ATAGGATTTATAG-TGCCCAATCATGAAAAGAATGGGA-ATTATTA
* * ** * * * * *
2184319 TGAGAATCCATGTTTGTCTTATTTGAA-GGACGAAC--GATTCTAATG-AAAATGAGGGAAGGAA
250 CGACAATCCACATTTGCCTCAATT-AATGGAC-AACTTGATTCTAAGGAAAAATGAGGGAAAGAA
* ** *
2184380 AAGCTTTTCTTGCAAAAATAAAGACATCAATATCGTGTATCCTAATGAGAAGTACGTCATTTTGT
313 AAGCTTTTCTTGCGAAACCAAAG-CATCAATATCGTGTATCCTAATAAGAAGTACGTCATTTTGT
* * ** * * *
2184445 TGTCGAATCATGAAAGGAATGGAGATTATTATATCAATCCATTCTTGTCTCATTTGAGGGATGAA
377 TGCCGAATCAAGAAACAAATGGAGATTATTAGATCAATCCATTCTTGCCTCATTTGAGAGATGAA
2184510 CTTTGATTCTACGAAAATCGGTGGAAAGGAA-
442 CTTTGATTCTACGAAAATCGGTGGAAA-GAAG
* * ** * *
2184541 AGCTTTCTTATAAAACCAAAGGATCAATATTGTGTATCCCAATGAGGAAAAA-GTGTTTATGGT-
1 AGCTTTCTTACAAAACCAAAGAATCAATATCATGTATCCCAAT-AAGAAAAATGTGTTTATAGTG
* * * * *
2184604 TCCTAATCCCAAAGAGAT-CAG-AGA-TTATTATAAGGATCCAAGTTTGTCTTGATTGATGGATG
65 GCC-AAT--C-AAGA-ATAAAGTAGAGTTATTACAAGAATCCAAGTTTGTCTTGACTGATGGAT-
* * **
2184666 AA-CTTTGATTCTAGTGAAAATGGTGGGAAGAAAAACTTTTCCT-GCAAAAGCAAAGCATCAATA
124 AAGCTTTGATTCCA--AAAAATGGTGAAAAGAAAAACTTTT-CTAGCAAAAGCAAAGCATCAATA
* ** * *
2184729 TTATGTTTCCTAATGAGGAGAATAGG-TTTATAGTGCCCAATTGTGAAAAGACTGGGGATTATTA
186 TCATGTTTCCTAATGAGGAG-ATAGGATTTATAGTGCCCAATCATGAAAAGAATGGGAATTATTA
** * *
2184793 CGACAATTTATATTTGCCTCAATTAATGGATGAACTTTGATTCTAA-GAAAAATGAGGGAAAGAA
250 CGACAATCCACATTTGCCTCAATTAATGGA-CAAC-TTGATTCTAAGGAAAAATGAGGGAAAGAA
* * * * **
2184857 AAGCTTTTCTTGTGAAACCAAAGTATCAATATCTTGTATTCC-AATAAGGAA-TATGTGTTTTTG
313 AAGCTTTTCTTGCGAAACCAAAGCATCAATATCGTGTA-TCCTAATAA-GAAGTACGTCATTTTG
*
2184920 TTGCCGAATCAAGAAACAAATTGAGATTATTACGAT-AATCCATGT-TTGCCTCATTTGAGAGAT
376 TTGCCGAATCAAGAAACAAATGGAGATTATTA-GATCAATCCAT-TCTTGCCTCATTTGAGAGAT
* *
2184983 GAACTTTGATTCTAAGGAAAGT-GGTGGAAAGAAG
439 GAACTTTGATTCT-ACGAAAATCGGTGGAAAGAAG
* * * *
2185017 TGCTTTCTTGCAAAACCAAAGAATCAATATCATGTATCCCACTAAGAAAAATTTGTTTATAGTGG
1 AGCTTTCTTACAAAACCAAAGAATCAATATCATGTATCCCAATAAGAAAAATGTGTTTATAGTGG
* *
2185082 CCAATCAAGAATAAAGTGGAGTTATTACAAGAATCCATGTTTGTCTTGACTGATGGATAAGCTTT
66 CCAATCAAGAATAAAGTAGAGTTATTACAAGAATCCAAGTTTGTCTTGACTGATGGATAAGCTTT
* *
2185147 GATTCCAAAAAATGGTGAAAAGAAAAGCTTTTTTAGCAAAAGCAAAGCATCAATATCATGTTTCC
131 GATTCCAAAAAATGGTGAAAAGAAAAACTTTTCTAGCAAAAGCAAAGCATCAATATCATGTTTCC
* * * * * * *
2185212 TAATGATGAGATTGGATTTATGGTGCCCAATCATGAAAATAATGGTAATTATTATGAGAATCCAC
196 TAATGAGGAGATAGGATTTATAGTGCCCAATCATGAAAAGAATGGGAATTATTACGACAATCCAC
* * * * *
2185277 ATTTGTCTCATTTGATTGACAACTTGATTCTAAGGAAAAATGGGGGAAAGAAAAGCTTTTCTTGC
261 ATTTGCCTCAATTAATGGACAACTTGATTCTAAGGAAAAATGAGGGAAAGAAAAGCTTTTCTTGC
2185342 GAAACCAAAGCATCAATATC
326 GAAACCAAAGCATCAATATC
2185362 ATTTGTCCCA
Statistics
Matches: 666, Mismatches: 119, Indels: 72
0.78 0.14 0.08
Matches are distributed among these distances:
471 12 0.02
472 155 0.23
473 191 0.29
474 43 0.06
475 59 0.09
476 147 0.22
477 59 0.09
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (472 bp):
AGCTTTCTTACAAAACCAAAGAATCAATATCATGTATCCCAATAAGAAAAATGTGTTTATAGTGG
CCAATCAAGAATAAAGTAGAGTTATTACAAGAATCCAAGTTTGTCTTGACTGATGGATAAGCTTT
GATTCCAAAAAATGGTGAAAAGAAAAACTTTTCTAGCAAAAGCAAAGCATCAATATCATGTTTCC
TAATGAGGAGATAGGATTTATAGTGCCCAATCATGAAAAGAATGGGAATTATTACGACAATCCAC
ATTTGCCTCAATTAATGGACAACTTGATTCTAAGGAAAAATGAGGGAAAGAAAAGCTTTTCTTGC
GAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGTACGTCATTTTGTTGCCGAATCAAGAA
ACAAATGGAGATTATTAGATCAATCCATTCTTGCCTCATTTGAGAGATGAACTTTGATTCTACGA
AAATCGGTGGAAAGAAG
Found at i:2189181 original size:14 final size:15
Alignment explanation
Indices: 2189162--2189190 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2189152 AATGTATTTC
2189162 ATCCTTAGGG-CATT
1 ATCCTTAGGGACATT
2189176 ATCCTTAGGGACATT
1 ATCCTTAGGGACATT
2189191 CCAAACAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (15 bp):
ATCCTTAGGGACATT
Found at i:2200888 original size:29 final size:30
Alignment explanation
Indices: 2200818--2200897 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
2200808 AGTTTTGGCA
*
2200818 TTTTAGTTGACTTTTAATT-CTTTTTGAGTG
1 TTTTAGTTGACTTTTAATTCCATTTT-AGTG
*
2200848 TTTTAGTTGACTTTTGATTCCATTTT-GTG
1 TTTTAGTTGACTTTTAATTCCATTTTAGTG
*
2200877 TTTTAGTAGACTTTTAATTCC
1 TTTTAGTTGACTTTTAATTCC
2200898 TTATCTTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
29 22 0.49
30 18 0.40
31 5 0.11
ACGTcount: A:0.17, C:0.10, G:0.15, T:0.57
Consensus pattern (30 bp):
TTTTAGTTGACTTTTAATTCCATTTTAGTG
Found at i:2210204 original size:18 final size:19
Alignment explanation
Indices: 2210162--2210211 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2210152 TCCATCTTCT
2210162 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2210180 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2210198 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2210212 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2210223 original size:42 final size:42
Alignment explanation
Indices: 2210168--2210286 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2210158 TTCTTCTCTC
* * * * *
2210168 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2210210 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2210252 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2210287 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2215713 original size:18 final size:19
Alignment explanation
Indices: 2215671--2215720 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2215661 TCCATCTTCT
2215671 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2215689 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2215707 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2215721 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2215732 original size:42 final size:42
Alignment explanation
Indices: 2215677--2215795 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2215667 TTCTTCTCTC
* * * * *
2215677 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2215719 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2215761 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2215796 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2221222 original size:18 final size:19
Alignment explanation
Indices: 2221180--2221229 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2221170 TCCATCTTCT
2221180 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2221198 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2221216 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2221230 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2221241 original size:42 final size:42
Alignment explanation
Indices: 2221186--2221304 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2221176 TTCTTCTCTC
* * * * *
2221186 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2221228 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2221270 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2221305 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2226744 original size:18 final size:19
Alignment explanation
Indices: 2226702--2226751 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2226692 TCCATCTTCT
2226702 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2226720 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2226738 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2226752 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2226763 original size:42 final size:42
Alignment explanation
Indices: 2226708--2226826 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2226698 TTCTTCTCTC
* * * * *
2226708 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2226750 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2226792 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2226827 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2227299 original size:16 final size:17
Alignment explanation
Indices: 2227268--2227300 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2227258 AAGTGAGGCC
*
2227268 AACAAAGAAAACACTAA
1 AACAAAGAAAAAACTAA
2227285 AACAAA-AAAAAACTAA
1 AACAAAGAAAAAACTAA
2227301 GGAACCCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.76, C:0.15, G:0.03, T:0.06
Consensus pattern (17 bp):
AACAAAGAAAAAACTAA
Found at i:2232258 original size:10 final size:9
Alignment explanation
Indices: 2232230--2232276 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
2232220 TCTCTCTATA
2232230 TATCTCTCC
1 TATCTCTCC
*
2232239 TGTCTCCTCC
1 TATCT-CTCC
2232249 TATCATCTCC
1 TATC-TCTCC
*
2232259 TATCTCTAC
1 TATCTCTCC
2232268 TATCTCTCC
1 TATCTCTCC
2232277 GGCTCCTATC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 16 0.50
10 15 0.47
11 1 0.03
ACGTcount: A:0.13, C:0.43, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2237764 original size:18 final size:19
Alignment explanation
Indices: 2237722--2237771 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2237712 TCCATCTTCT
2237722 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2237740 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2237758 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2237772 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2237783 original size:42 final size:42
Alignment explanation
Indices: 2237728--2237846 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2237718 TTCTTCTCTC
* * * * *
2237728 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2237770 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2237812 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2237847 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2243310 original size:43 final size:42
Alignment explanation
Indices: 2243257--2243380 Score: 167
Period size: 43 Copynumber: 2.9 Consensus size: 42
2243247 CATCTTCTTC
* * *
2243257 TCTCTCCTCCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTG
1 TCTCTCCTCC-TATCATCCCTCCTCTCTCTACTATCTCTCCGG
*
2243300 TCTCTCCTCCTATCATCCTCTCCTATCTCTACTATCTCTCCGG
1 TCTCTCCTCCTATCATCC-CTCCTCTCTCTACTATCTCTCCGG
* * *
2243343 CCTCTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2243381 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
42 24 0.33
43 48 0.67
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGG
Found at i:2248829 original size:18 final size:19
Alignment explanation
Indices: 2248787--2248836 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2248777 TCCATCTTCT
2248787 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2248805 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2248823 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2248837 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2248848 original size:42 final size:42
Alignment explanation
Indices: 2248793--2248911 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2248783 TTCTTCTCTC
* * * * *
2248793 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2248835 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2248877 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2248912 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2254353 original size:18 final size:19
Alignment explanation
Indices: 2254311--2254360 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2254301 TCCATCTTCT
2254311 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2254329 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2254347 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2254361 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2254372 original size:42 final size:42
Alignment explanation
Indices: 2254317--2254435 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2254307 TTCTTCTCTC
* * * * *
2254317 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
*
2254359 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCGGCCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
* *
2254401 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2254436 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCGGCCT
Found at i:2261065 original size:51 final size:52
Alignment explanation
Indices: 2261010--2261123 Score: 160
Period size: 51 Copynumber: 2.2 Consensus size: 52
2261000 TCTGGAAAGA
**
2261010 AAATGTATCGATTCATTTTTCATTGTATCAATACATTCTAGG-TTTTAA-CC
1 AAATGTATCGATAAATTTTTCATTGTATCAATACATTCTAGGTTTTTAATCC
* *
2261060 TAAATGTATTGATAAATTTTTCATTGTATCTATACATTCTAGGTTTTTAATCC
1 -AAATGTATCGATAAATTTTTCATTGTATCAATACATTCTAGGTTTTTAATCC
*
2261113 AAACGTATCGA
1 AAATGTATCGA
2261124 CATATTCTTC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
51 38 0.69
52 15 0.27
53 2 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (52 bp):
AAATGTATCGATAAATTTTTCATTGTATCAATACATTCTAGGTTTTTAATCC
Found at i:2263554 original size:81 final size:80
Alignment explanation
Indices: 2263461--2263842 Score: 426
Period size: 81 Copynumber: 4.8 Consensus size: 80
2263451 CCATTTATGT
* * *
2263461 GGGATACTCTAACCCTATTTTTACTCCTAAAAGTATCAAATTTTCCATCTTTGGGGATACTCTAA
1 GGGATACTCCAACCCCATTTTTACTCCTAAAAGTATCAAATTTTCCATCTTTGGGGATACTCCAA
*
2263526 TGCCACCATTTTCGAG
66 -CCCACCATTTTCGAG
* * * *
2263542 GGGATACTCTAACCCCATTTTTACTTCTAAAAGAATCAAATTTTCCATCTTCT-AGGATACTCCA
1 GGGATACTCCAACCCCATTTTTACTCCTAAAAGTATCAAATTTTCCATCTT-TGGGGATACTCCA
*
2263606 ACCCTGCCATTTTCGAG
65 ACCC-ACCATTTTCGAG
* * **
2263623 GGGACACTCCAACCCCATTTTTACTCCTAAAAATATCAAATTTTCCATCTTCAGGGATACTCCAA
1 GGGATACTCCAACCCCATTTTTACTCCTAAAAGTATCAAATTTTCCATCTTTGGGGATACTCCAA
*
2263688 CCCACCATTTTCAAG
66 CCCACCATTTTCGAG
* * *
2263703 GGCATATTCCAACCCCA-TTTTACTCCTACAAA-TATTAAAATTTT-CAT-TCTTGGGGATACTC
1 GGGATACTCCAACCCCATTTTTACTCCTA-AAAGTA-TCAAATTTTCCATCT-TTGGGGATACTC
*
2263764 CAACCCCACCATTTTTGAG
63 CAA-CCCACCATTTTCGAG
* * * *
2263783 GGAATACGCCAACCCCATTTTTACTTCT--AA--A--AAATTTTCCATCTTTGGGAATACTCCAA
1 GGGATACTCCAACCCCATTTTTACTCCTAAAAGTATCAAATTTTCCATCTTTGGGGATACTCCAA
2263842 C
66 C
2263843 TCCCAAAAAT
Statistics
Matches: 262, Mismatches: 29, Indels: 27
0.82 0.09 0.08
Matches are distributed among these distances:
74 8 0.03
75 17 0.06
76 1 0.00
77 1 0.00
78 3 0.01
79 29 0.11
80 64 0.24
81 138 0.53
82 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (80 bp):
GGGATACTCCAACCCCATTTTTACTCCTAAAAGTATCAAATTTTCCATCTTTGGGGATACTCCAA
CCCACCATTTTCGAG
Found at i:2263723 original size:25 final size:25
Alignment explanation
Indices: 2263667--2263717 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
2263657 ATCAAATTTT
*
2263667 CCATCTTCAGGGATACTCCAACCCA
1 CCATTTTCAGGGATACTCCAACCCA
*
2263692 CCATTTTCAAGGGCATATTCCAACCC
1 CCATTTTC-AGGG-ATACTCCAACCC
2263718 CATTTTACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 4 0.18
27 11 0.50
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (25 bp):
CCATTTTCAGGGATACTCCAACCCA
Found at i:2263776 original size:26 final size:28
Alignment explanation
Indices: 2263747--2263799 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
2263737 TTAAAATTTT
*
2263747 CATTCTTG-GGG-ATACTCCAACCCCAC
1 CATTCTTGAGGGAATACGCCAACCCCAC
*
2263773 CATTTTTGAGGGAATACGCCAACCCCA
1 CATTCTTGAGGGAATACGCCAACCCCA
2263800 TTTTTACTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 7 0.30
27 3 0.13
28 13 0.57
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (28 bp):
CATTCTTGAGGGAATACGCCAACCCCAC
Found at i:2263994 original size:196 final size:196
Alignment explanation
Indices: 2263645--2263998 Score: 430
Period size: 196 Copynumber: 1.8 Consensus size: 196
2263635 CCCCATTTTT
* * *
2263645 ACTCCTAAAAATATCAAATTTTCCATCTTCAGGGATACTCCAACCCACCATTTTCAAGGGCATAT
1 ACTCCCAAAAATACCAAATTTTCCATCTTCAGGGATACTCCAACCCACCATTTTCAAAGGCATAT
* *
2263710 TCCAACCCCATTTTACTCCTACAAATATTAAAATTTTCATTCTTGGGGATACTCCAACCCCACCA
66 TCCAACCCCATTTTACTCCTAAAAATATTAAAATTTTCATTCTTGGAGATACTCCAACCCCACCA
* * *
2263775 TTTTTGAGGGAATACGCCAACCCCATTTTTACTTCTAAAAAATTTTCCATCTTTGGGAATACTCC
131 TCTCTGAGGGAATACGACAACCCCATTTTTACTTCTAAAAAATTTTCCATCTTTGGGAATACTCC
2263840 A
196 A
* ** * *
2263841 ACTCCCAAAAATACCAAATTTTTCAT-TTTTGGGATACTCCAACCCCGCCATTTCTGAAAGG-AT
1 ACTCCCAAAAATACCAAATTTTCCATCTTCAGGGATACTCCAA-CCCACCATTT-TCAAAGGCAT
* * * * * *
2263904 ACTT-TAACTCTATTTTACTTCTAAAAATA-TCAAATTTTC-TATCTTTGTAGATACTCCAACCC
64 A-TTCCAACCCCATTTTACTCCTAAAAATATTAAAATTTTCAT-TC-TTGGAGATACTCCAACCC
* * *
2263966 CACTATCTCTGAGGGGATACTACAACCCCATTT
126 CACCATCTCTGAGGGAATACGACAACCCCATTT
2263999 CTTCTTAAAT
Statistics
Matches: 131, Mismatches: 22, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
194 1 0.01
195 25 0.19
196 98 0.75
197 7 0.05
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (196 bp):
ACTCCCAAAAATACCAAATTTTCCATCTTCAGGGATACTCCAACCCACCATTTTCAAAGGCATAT
TCCAACCCCATTTTACTCCTAAAAATATTAAAATTTTCATTCTTGGAGATACTCCAACCCCACCA
TCTCTGAGGGAATACGACAACCCCATTTTTACTTCTAAAAAATTTTCCATCTTTGGGAATACTCC
A
Found at i:2267770 original size:29 final size:29
Alignment explanation
Indices: 2267737--2267849 Score: 147
Period size: 29 Copynumber: 3.9 Consensus size: 29
2267727 AGAAGTTTTG
*
2267737 GTGTTTTAGTTGAATTTTAATTCCTTTCA
1 GTGTTTTAGTTGACTTTTAATTCCTTTCA
* * *
2267766 GTGTTTTGGTTGACTTTTAATTTCTTTTTA
1 GTGTTTTAGTTGACTTTTAA-TTCCTTTCA
* *
2267796 -TTTTTTAGTTGATTTTTAATTCCTTTCA
1 GTGTTTTAGTTGACTTTTAATTCCTTTCA
*
2267824 GTGTTTTATTTGACTTTTAATTCCTT
1 GTGTTTTAGTTGACTTTTAATTCCTT
2267850 AGCTTTATAT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 7 0.10
29 56 0.80
30 7 0.10
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.61
Consensus pattern (29 bp):
GTGTTTTAGTTGACTTTTAATTCCTTTCA
Found at i:2272885 original size:58 final size:58
Alignment explanation
Indices: 2272807--2272922 Score: 162
Period size: 60 Copynumber: 2.0 Consensus size: 58
2272797 TATTTAGTGC
* * *
2272807 TGTTCATCATCCAT-AAAAAAAGCAAAAAAAAAAGTGTTCTAGTGTTTTAACTCTTTGT
1 TGTTCATCATACATAAAAAAAAGC-AAAAAAAAAGTGTTCTAGTGTTATAACCCTTTGT
*
2272865 TGTTCATCATATATATAAAAAAAAGCAAAAAAAAAGTGTTCTAGTGTTATAACCCTTT
1 TGTTCATC--ATACATAAAAAAAAGCAAAAAAAAAGTGTTCTAGTGTTATAACCCTTT
2272923 TCCATTTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
58 8 0.16
60 34 0.67
61 9 0.18
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (58 bp):
TGTTCATCATACATAAAAAAAAGCAAAAAAAAAGTGTTCTAGTGTTATAACCCTTTGT
Found at i:2278658 original size:20 final size:21
Alignment explanation
Indices: 2278629--2278684 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
2278619 AACCCCAGAA
* *
2278629 TATATCGATATA-ATGCTCAT
1 TATATCGATACATATCCTCAT
*
2278649 TATATGGATACATATCCTCAT
1 TATATCGATACATATCCTCAT
2278670 TATGTATCGATACAT
1 TA--TATCGATACAT
2278685 CTACTTATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 10 0.34
21 9 0.31
23 10 0.34
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (21 bp):
TATATCGATACATATCCTCAT
Found at i:2279794 original size:30 final size:28
Alignment explanation
Indices: 2279760--2279827 Score: 84
Period size: 30 Copynumber: 2.4 Consensus size: 28
2279750 TTTCATCTGG
* *
2279760 ACCTTTTTTTTCTGT-TTTCTTATTTTTTT
1 ACCTTTTTTTTAT-TATTTATTA-TTTTTT
2279789 AACCTTTTTTTTATTATTTATTATTTTTT
1 -ACCTTTTTTTTATTATTTATTATTTTTT
2279818 ACCTTTTTTT
1 ACCTTTTTTT
2279828 AGAAGGACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 10 0.29
29 7 0.20
30 18 0.51
ACGTcount: A:0.13, C:0.12, G:0.01, T:0.74
Consensus pattern (28 bp):
ACCTTTTTTTTATTATTTATTATTTTTT
Found at i:2281031 original size:20 final size:20
Alignment explanation
Indices: 2280989--2281042 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
2280979 TTCTACAATT
* *
2280989 TGTATTAATACAACAAGTAAA
1 TGTATTGATAC-ATAAGTAAA
*
2281010 TGTATTGATACATAAGTGAA
1 TGTATTGATACATAAGTAAA
*
2281030 TGTATTGGTACAT
1 TGTATTGATACAT
2281043 TTTTTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (20 bp):
TGTATTGATACATAAGTAAA
Found at i:2281174 original size:49 final size:51
Alignment explanation
Indices: 2281099--2281233 Score: 168
Period size: 51 Copynumber: 2.6 Consensus size: 51
2281089 TCTGAAAAGA
* * * *
2281099 AAATGTATCGATACATTTTTTTATTGTATCGATGCATTCTAGG-TTTGATCT
1 AAATGTATCGATACA-TTTTTAATTGTATCGATACATTCTAGGTTTTGACCC
* *
2281150 AAATGTATCAATA-ATTTTTAATTGTATCGATACATTCTGGGTTTTTGACCC
1 AAATGTATCGATACATTTTTAATTGTATCGATACATTCTAGG-TTTTGACCC
2281201 AAATGTATCGATACATTCTTTAA-TGTATCGATA
1 AAATGTATCGATACATT-TTTAATTGTATCGATA
2281234 GATCTAGTTA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
49 24 0.33
50 1 0.01
51 30 0.41
52 13 0.18
53 5 0.07
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.44
Consensus pattern (51 bp):
AAATGTATCGATACATTTTTAATTGTATCGATACATTCTAGGTTTTGACCC
Found at i:2294877 original size:16 final size:16
Alignment explanation
Indices: 2294817--2294888 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 16
2294807 GAGGGAGCTT
* * *
2294817 AAACTCGAAAAAACAC
1 AAACCCGAAAGAACTC
2294833 AAACCCGAAAGAACTC
1 AAACCCGAAAGAACTC
* * *
2294849 GAACACAAAAGAACTC
1 AAACCCGAAAGAACTC
*
2294865 AAACCCGAGAGAAC-C
1 AAACCCGAAAGAACTC
2294880 TAAACCCGA
1 -AAACCCGA
2294889 GACTGACCCA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
15 1 0.02
16 44 0.98
ACGTcount: A:0.53, C:0.29, G:0.12, T:0.06
Consensus pattern (16 bp):
AAACCCGAAAGAACTC
Found at i:2295869 original size:29 final size:29
Alignment explanation
Indices: 2295831--2295886 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
2295821 CAATAAATAA
*
2295831 ATAATTAAATATA-TTAAAAATATAATAGC
1 ATAATAAAATATACTTAAAAAT-TAATAGC
*
2295860 ATAATAAAATTTACTTAAAAATTAATA
1 ATAATAAAATATACTTAAAAATTAATA
2295887 ATTTAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (29 bp):
ATAATAAAATATACTTAAAAATTAATAGC
Found at i:2296062 original size:16 final size:16
Alignment explanation
Indices: 2296036--2296099 Score: 67
Period size: 16 Copynumber: 4.0 Consensus size: 16
2296026 GAAAAAGGCT
*
2296036 CAAACCCGAATAAGCC
1 CAAACTCGAATAAGCC
2296052 CAAA-TCTGAATAAGCC
1 CAAACTC-GAATAAGCC
* *
2296068 CGAACTCGAAAAAGCC
1 CAAACTCGAATAAGCC
* *
2296084 CAAACTTGAACAAGCC
1 CAAACTCGAATAAGCC
2296100 TGAACCTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
15 1 0.03
16 37 0.93
17 2 0.05
ACGTcount: A:0.44, C:0.31, G:0.14, T:0.11
Consensus pattern (16 bp):
CAAACTCGAATAAGCC
Found at i:2296099 original size:32 final size:32
Alignment explanation
Indices: 2296012--2296104 Score: 84
Period size: 32 Copynumber: 2.9 Consensus size: 32
2296002 ACTTGAACCT
* * * *
2296012 GAAAAAGCCC-AATC-GAAAAAGGCTCAAACCC
1 GAAAAAGCCCAAATCTGAACAA-GCCCGAACTC
* *
2296043 GAATAAGCCCAAATCTGAATAAGCCCGAACTC
1 GAAAAAGCCCAAATCTGAACAAGCCCGAACTC
*
2296075 GAAAAAGCCCAAA-CTTGAACAAGCCTGAAC
1 GAAAAAGCCCAAATC-TGAACAAGCCCGAAC
2296105 CTAAACGAGC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
31 10 0.20
32 36 0.71
33 5 0.10
ACGTcount: A:0.45, C:0.28, G:0.16, T:0.11
Consensus pattern (32 bp):
GAAAAAGCCCAAATCTGAACAAGCCCGAACTC
Found at i:2300881 original size:10 final size:10
Alignment explanation
Indices: 2300866--2300890 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2300856 AAAATCATCC
2300866 AATGGGCCTA
1 AATGGGCCTA
2300876 AATGGGCCTA
1 AATGGGCCTA
2300886 AATGG
1 AATGG
2300891 CCCAACCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.20
Consensus pattern (10 bp):
AATGGGCCTA
Found at i:2308456 original size:155 final size:158
Alignment explanation
Indices: 2308170--2308476 Score: 388
Period size: 155 Copynumber: 2.0 Consensus size: 158
2308160 AAATTGATTC
* * ** * ** *
2308170 ACATAATAATCTCCACTCTTTTCATGATTAGGCACCATAAACACATTTTCCTTGTTGGGAAACAT
1 ACATAACAATCTCCACTCTTTTCATGATTAGGCAACATAAACACATACTCATCATTGGGAAACAA
* * * * *
2308235 GATATTAATGCTTTGATTTCGCAAGGAAGCTTTTCTTTCCACCATTTTTCTTAGCATCAAAGTTC
66 GATATTAATGCTTTGATTTCACAAGAAAGCTTTTCTTTCCACCATTTTCCATAGAATCAAAGTTC
2308300 ATCCCTCAAATGAGACAAACATGGACTG
131 ATCCCTCAAATGAGACAAACATGGACTG
* * *
2308328 ACATAACAATCTCCATTCTTTTCATGATTTGGCAACA-AAA-AC-TACTCATCATTGGGATACAA
1 ACATAACAATCTCCACTCTTTTCATGATTAGGCAACATAAACACATACTCATCATTGGGAAACAA
* * * *
2308390 GATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTTTCC-CCATTTTCCATAGAATGAAAGTT
66 GATATTAATGCTTTGATTTCACAAG-AAAGCTTTTCTTTCCACCATTTTCCATAGAATCAAAGTT
*
2308454 CATCCTTCAAATGAGACAAACAT
130 CATCCCTCAAATGAGACAAACAT
2308477 CGATTCTTGC
Statistics
Matches: 127, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
155 76 0.60
156 15 0.12
157 3 0.02
158 33 0.26
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (158 bp):
ACATAACAATCTCCACTCTTTTCATGATTAGGCAACATAAACACATACTCATCATTGGGAAACAA
GATATTAATGCTTTGATTTCACAAGAAAGCTTTTCTTTCCACCATTTTCCATAGAATCAAAGTTC
ATCCCTCAAATGAGACAAACATGGACTG
Found at i:2311596 original size:159 final size:157
Alignment explanation
Indices: 2311433--2311784 Score: 372
Period size: 158 Copynumber: 2.2 Consensus size: 157
2311423 TTGAAATTAG
* *
2311433 TGGAGATTATCATGAGAATCCATGTTTGTCTCAATTTG-CAGATGAACTTTGATTCC-AAGGAAA
1 TGGAGATTATTATGAGAATCCATGTTTGT-TCAATTTGACAGATAAACTTTGA-TCCTAAGGAAA
* * * ** * *
2311496 ATGATGGAAAGAAATGCTTTTCCTATGAAACCTAAGCATCAATATTGCA-TTTCCTAATAAGGAG
64 ATGATGGAAAGAAAAGC-TTTCCTATGAAAACAAAGCATCAATA-TAAAGTATCCAAATAAGGA-
** *
2311560 AATAGGT-TT-ATTGTGCCCAATTGTAAAAAGAA
126 AA-AGGTATTAAGGGTGCCCAATAGTAAAAA-AA
* ** ** *
2311592 TGGAGATTGTTATGTCAATCCATGTTTGTTTTATTTGAGAGATAAACTTTGATCCTAAGGAAAAT
1 TGGAGATTATTATGAGAATCCATGTTTGTTCAATTTGACAGATAAACTTTGATCCTAAGGAAAAT
* * * * *
2311657 GGTGGAAAGAAAAGCTTTCTTGTGAAAACAAAGCATTAATATAAAGTATCCAAATAAGGAAAATG
66 GATGGAAAGAAAAGCTTTCCTATGAAAACAAAGCATCAATATAAAGTATCCAAATAAGGAAAAGG
*
2311722 TATTAAGGGTGCCCAATAGTGAAAAAA
131 TATTAAGGGTGCCCAATAGTAAAAAAA
*
2311749 TGGAGATTATTATGAGAATCCATGTTAGTTTCAATT
1 TGGAGATTATTATGAGAATCCATGTTTG-TTCAATT
2311785 GATGGACAAG
Statistics
Matches: 157, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.02
157 32 0.20
158 63 0.40
159 59 0.38
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (157 bp):
TGGAGATTATTATGAGAATCCATGTTTGTTCAATTTGACAGATAAACTTTGATCCTAAGGAAAAT
GATGGAAAGAAAAGCTTTCCTATGAAAACAAAGCATCAATATAAAGTATCCAAATAAGGAAAAGG
TATTAAGGGTGCCCAATAGTAAAAAAA
Found at i:2321345 original size:42 final size:42
Alignment explanation
Indices: 2321290--2321408 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2321280 TTCTTCTCTC
* *
2321290 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2321332 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2321374 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2321409 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2321349 original size:12 final size:11
Alignment explanation
Indices: 2321323--2321398 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2321313 TCTATTATCT
*
2321323 CTCCTGTCTCTC
1 CTCCTATCTC-C
2321335 CTCCTATCATCC
1 CTCCTATC-TCC
2321347 CTCCTATCT--
1 CTCCTATCTCC
*
2321356 CTACTATCT--
1 CTCCTATCTCC
*
2321365 CTCCTGTCTCTC
1 CTCCTATCTC-C
2321377 CTCCTATCATCC
1 CTCCTATC-TCC
*
2321389 CTCCTCTCTC
1 CTCCTATCTC
2321399 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2321350 original size:24 final size:24
Alignment explanation
Indices: 2321314--2321399 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2321304 CCTCCTCTCT
* *
2321314 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2321338 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2321359 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2321380 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2321400 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2321374 original size:18 final size:18
Alignment explanation
Indices: 2321305--2321375 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2321295 CCTGTCATCC
* *
2321305 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2321323 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2321345 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2321365 CTCCTGTCTCT
1 CTCCTGTCTCT
2321376 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2328945 original size:12 final size:11
Alignment explanation
Indices: 2328923--2328998 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2328913 AGAGAAAGAA
*
2328923 GAGAGAGGAGG
1 GAGATAGGAGG
2328934 GATGATAGGAGG
1 GA-GATAGGAGG
*
2328946 AGAGACAGGA--
1 -GAGATAGGAGG
*
2328956 GAGATAGTA--
1 GAGATAGGAGG
2328965 GAGATAGGAGG
1 GAGATAGGAGG
2328976 GATGATAGGAGG
1 GA-GATAGGAGG
*
2328988 AGAGACAGGAG
1 -GAGATAGGAG
2328999 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2328955 original size:24 final size:24
Alignment explanation
Indices: 2328922--2329007 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2328912 AAGAGAAAGA
*
2328922 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2328946 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2328964 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2328988 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2329008 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2328974 original size:42 final size:42
Alignment explanation
Indices: 2328913--2329031 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2328903 TAGCCCTCAA
* *
2328913 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2328955 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2328997 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2329032 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2334254 original size:42 final size:42
Alignment explanation
Indices: 2334193--2334311 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2334183 TAGCCCTCAA
* *
2334193 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2334235 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACATG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2334277 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2334312 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2339761 original size:160 final size:159
Alignment explanation
Indices: 2339579--2339890 Score: 498
Period size: 160 Copynumber: 2.0 Consensus size: 159
2339569 TTAACCGATG
* * *
2339579 AACTTTGATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAAACCAAAGCATTAGTATC
1 AACTTTAATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAAACCAAAGCATCAATATC
*
2339644 ATGTTTCTTAATAAGGAGAAATGGTTTATGGTGCCCAATCACAAAAAAAAATAGAGATTACTATG
66 ATGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCCAATCACAAAAAAAAATAGAGA-TACTATG
2339709 AGAATCCATGTTTGTCTCATTTGATAGTCA
130 AGAATCCATGTTTGTCTCATTTGATAGTCA
* *
2339739 AACTTTAATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAATCCCAAGCATCAATATC
1 AACTTTAATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAAACCAAAGCATCAATATC
* ** * *
2339804 ATGTTTCCTAATAAGGATAAATGGTTTATGGTGCCCAATCACAAAAAAAGGTGGAGATATTATGA
66 ATGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCCAATCACAAAAAAAAATAGAGATACTATGA
* *
2339869 GAATCTATGTTTGTCTTATTTG
131 GAATCCATGTTTGTCTCATTTG
2339891 TCAAACTTTG
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
159 27 0.19
160 112 0.81
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (159 bp):
AACTTTAATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAAACCAAAGCATCAATATC
ATGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCCAATCACAAAAAAAAATAGAGATACTATGA
GAATCCATGTTTGTCTCATTTGATAGTCA
Found at i:2340429 original size:159 final size:158
Alignment explanation
Indices: 2339421--2341119 Score: 769
Period size: 159 Copynumber: 10.8 Consensus size: 158
2339411 TTGAGTGACT
* * * * * *
2339421 AACTTTGATTCTACA-GAGAATGGTGGAAAGAAAAGCTTTCATGCAAAACCAAAGCTTCACTATC
1 AACTTTGATTCTA-AGGAAAATGGTGGAAAGAAAAGCTTTCCTACGAAACCAAAGCATCAATATC
* *** ** *
2339485 ATGTATT-CAAATAAGGA-AAAAACTTCTATGGTGCCTAATCATGAAAAGAATGGAGATTATTAC
65 ATGT-TTCCTAATAAGGAGAAATGGTT-TATGGTGCCTAATCACAAAAAGAATGGAGATTATTAT
** * **
2339548 GAGAATCCATAATTGTCTCGAT-TAACCGATG
128 GAGAATCCATGTTTGTCTC-ATATGAGAGATG
* * ** * * * *
2339579 AACTTTGATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAAACCAAAGCATTAGTATC
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAG-CTTTCCTACGAAACCAAAGCATCAATATC
* * * * *
2339644 ATGTTTCTTAATAAGGAGAAATGGTTTATGGTGCCCAATCACAAAAAAAAATAGAGATTACTATG
65 ATGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCTAATCAC-AAAAAGAATGGAGATTATTATG
* * *
2339709 AGAATCCATGTTTGTCTCATTTGATAG-TCA
129 AGAATCCATGTTTGTCTCATATGAGAGAT-G
* * * ** * * * *
2339739 AACTTTAATTATAAAGAAAATGGTTTAAAGAAAAGATTTTCCTATGAATCCCAAGCATCAATATC
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAG-CTTTCCTACGAAACCAAAGCATCAATATC
* *
2339804 ATGTTTCCTAATAAGGATAAATGGTTTATGGTGCCCAATCACAAAAA-AAGGTGGAGA-TATTAT
65 ATGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCTAATCACAAAAAGAA--TGGAGATTATTAT
* ** **
2339867 GAGAATCTATGTTTGTCT--TATTTGTCA--
128 GAGAATCCATGTTTGTCTCATATGAGAGATG
* * * *
2339894 AACTTTGATTCTAAGG-AAATAAG-GGAAAGAAAAGCTTTTCTAGCGAAACCAAAACATCTATAT
1 AACTTTGATTCTAAGGAAAAT-GGTGGAAAGAAAAGCTTTCCTA-CGAAACCAAAGCATCAATAT
* * * * * * * * * ** *
2339957 AATGTGTCCCATTGACGAG-TA-CGTGT-TGGTGTTGTGAATCACAAAAAGAATGGAGATTGTTA
64 CATGTTTCCTAATAAGGAGAAATGGTTTATGGTG-CCT-AATCACAAAAAGAATGGAGATTATTA
** *
2340019 TGTCAATCCATGTTTGTCTCA-ATTGAGGGATG
127 TGAGAATCCATGTTTGTCTCATA-TGAGAGATG
* * * * * *
2340051 AACTTTGATTCTAAGAAAAATGGTGGAAAGAAACA-CTTTCTTGCAAAACTAAAGCATTAATATC
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAA-AGCTTTCCTACGAAACCAAAGCATCAATATC
*** * * * * * * * * *
2340115 ATGCAACCCATTAAGGA-AAATATGTTTATAGAGCCTACTCATAAAAATAATGGAGATTAATT-C
65 ATGTTTCCTAATAAGGAGAAAT-GGTTTATGGTGCCTAATCACAAAAAGAATGGAGATT-ATTAT
* ** * * *
2340178 GACAATTAATGTTTTTTCTCA-ATTGATAGATA
128 GAGAATCCATG-TTTGTCTCATA-TGAGAGATG
* * * ** **
2340210 AACTTTGATTCT-AGAGAAAATAGTGGAAA-AAAAGCTTTTCCTATGGAACTGAAGGGTCAATAT
1 AACTTTGATTCTAAG-GAAAATGGTGGAAAGAAAAGC-TTTCCTACGAAACCAAAGCATCAATAT
* * ** *
2340273 CATGTTTCATAATGAGGAGAAATGGCGTATGATGCCTAATCACCAAAAAGAATGGAGATTATTAT
64 CATGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCTAATCA-CAAAAAGAATGGAGATTATTAT
*
2340338 GAGAATCCATGTTTGTCTCATATGAGGGATG
128 GAGAATCCATGTTTGTCTCATATGAGAGATG
* * * * * **
2340369 AACTTTGATCCCAAGGAAAATGGTGGAAAGAAAGGCTTTCCTACAAAACCAAAGTATCAATATTG
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGCTTTCCTACGAAACCAAAGCATCAATATCA
* * * * * ** * * *
2340434 TGTATCCTACTGAGGAG-TATGTGTTT-TTGTTACTAAATCACGAAAA-AATAGAGATTATTACG
66 TGTTTCCTAATAAGGAGAAATG-GTTTATGGTGCCT-AATCACAAAAAGAATGGAGATTATTATG
** *
2340496 TTAATCTCA----T-T-T--TA-G-G-GA-C
129 AGAATC-CATGTTTGTCTCATATGAGAGATG
* * * *
2340515 AAGCTTTAATTC-ATAGGAAAATGGTGGAAA-AATAAGCTTTCTTGCGAAATCAAAGCATCAATA
1 AA-CTTTGATTCTA-AGGAAAATGGTGGAAAGAA-AAGCTTTCCTACGAAACCAAAGCATCAATA
* * * * * *
2340578 TTATGTATCCTAATAACGA-AAATGTGTTTATGGT--CTGCAATCATGAAAAA-AGTGGAGATCA
63 TCATGTTTCCTAATAAGGAGAAATG-GTTTATGGTGCCT--AATCA-CAAAAAGAATGGAGATTA
* * *
2340639 TCATGAGAATCCATGTGTGTCTCGAT-TGATAGATG
124 TTATGAGAATCCATGTTTGTCTC-ATATGAGAGATG
* * * ** * * *
2340674 AACTTTTGATTTTAAGGAAAATGGTGGAAAGAGAAGCTTTTGCTTTGAAACTAAATCATAAATAT
1 AAC-TTTGATTCTAAGGAAAATGGTGGAAAGAAAAGC-TTTCCTACGAAACCAAAGCATCAATAT
* * ** *
2340739 CATG-TTCCTAATAAGGAG-AATGAG-TTGTGGTGCCTAGTCATGAAAAGAATGGAGATTATTCT
64 CATGTTTCCTAATAAGGAGAAATG-GTTTATGGTGCCTAATCACAAAAAGAATGGAGATTATTAT
* * * * * *
2340801 GAAAATCTACGTATGACTCAT-TCGATG-GACG
128 GAGAATCCATGTTTGTCTCATAT-GA-GAGATG
* * * ** * * * * **
2340832 AACTTTGATTCTAAAGAAAATGGGGGAAAGAAAAACATTTTGTTGCAAAACTAAAAACATCAGCA
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGC--TTTCCTACGAAAC-CAAAGCATCAATA
* * * * * *
2340897 TCATGTATCCCAATAAGGAG-TATGTGTTTTCAT--TG-CTGAATCATAAAAAGAATGGGGATTG
63 TCATGTTTCCTAATAAGGAGAAATG-G-TTT-ATGGTGCCT-AATCACAAAAAGAATGGAGATTA
* * * * *
2340958 TTA-CATCAATCCATGTTTGTCTTATTTGAGAGACG
124 TTATGA-GAATCCATGTTTGTCTCATATGAGAGATG
* * ** * * ** ** **
2340993 AACTTTGATCCTAAGGATAATACTAGAATGAAAAGCTTT-CTTTGTCATGAAAGCATCAATATCA
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGCTTTCCTACGAAACCAAAGCATCAATATCA
* * * ** *
2341057 TGTATTCCT-ATGAGGA-AAATGTGTTTATGGTACCCAATCATGAAAATAATGGAGATTATTATG
66 TGT-TTCCTAATAAGGAGAAATG-GTTTATGGTGCCTAATCACAAAAAGAATGGAGATTATTATG
2341120 CAATCCTTTT
Statistics
Matches: 1156, Mismatches: 297, Indels: 176
0.71 0.18 0.11
Matches are distributed among these distances:
146 7 0.01
147 79 0.07
148 23 0.02
149 1 0.00
150 2 0.00
151 6 0.01
152 11 0.01
153 40 0.03
154 44 0.04
155 19 0.02
156 5 0.00
157 150 0.13
158 160 0.14
159 306 0.26
160 230 0.20
161 69 0.06
162 3 0.00
163 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (158 bp):
AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGCTTTCCTACGAAACCAAAGCATCAATATCA
TGTTTCCTAATAAGGAGAAATGGTTTATGGTGCCTAATCACAAAAAGAATGGAGATTATTATGAG
AATCCATGTTTGTCTCATATGAGAGATG
Found at i:2342282 original size:157 final size:154
Alignment explanation
Indices: 2342028--2342467 Score: 383
Period size: 158 Copynumber: 2.8 Consensus size: 154
2342018 ATGTTTTCAT
* ** * * *
2342028 TGCCAAATCATGAAAAGAATGGAAATTATTATGTCAATCCA-TGTCTCATTTAAGAGATGAA-TG
1 TGCCAAATCATGAAAAGAATGGAGATTATTATGAGAATCTATTGTCTCAATTAATAGATGAACT-
* *
2342091 TTGATTCT-GGGAAAAATGTTA-AACA-AAAATGCTTTCTTATGAAACAAAAGTATCAATATCGT
65 TTGATTCTAAGG-AAAATG-TAGAA-AGAAAA-GCTTTCTTATGAAACAAAAGCATCAATATCGT
* * *
2342153 GTGTCCCAAGGAGAAA-ATTTTGTTTATGG
126 GTGTCCCAAAGA-AAAGAATTGGTTTATGG
* *
2342182 TGCCCAATCATGAAAAGAGTGGAGATTATTATGAGAATCTATGCTGTCTCAATTAATAGATGAAC
1 TGCCAAATCATGAAAAGAATGGAGATTATTATGAGAATCTAT--TGTCTCAATTAATAGATGAAC
* * * * *
2342247 TTTGATTCTAATGAAAATGCTAGAAAGAAAAGCTTT-TCAAGTAAAACCAAAGCATCAATATTGT
64 TTTGATTCTAAGGAAAATG-TAGAAAGAAAAGCTTTCT-TA-TGAAACAAAAGCATCAATATCGT
* *
2342311 GTTTCCTAAAGAAAAGAATTGGTTTATGG
126 GTGTCCCAAAGAAAAGAATTGGTTTATGG
* * * * * **
2342340 TGCCAAATCATGAAAAGAATGTAGCTTGTTATGAGAATCCCTATTTGTCTC-ATTCGATGGACAA
1 TGCCAAATCATGAAAAGAATGGAGATTATTATGAGAAT--CTA-TTGTCTCAATT-AATAGATGA
* * * * *
2342404 ACATTGATTCTAAGGAAAATTGGAGAAAGAAAATCTTTTCTTATGAAGCTAAAGCATCAATATC
62 ACTTTGATTCTAAGGAAAA-TGTAGAAAGAAAAGC-TTTCTTATGAAACAAAAGCATCAATATC
2342468 ATGTATCCTA
Statistics
Matches: 230, Mismatches: 39, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
154 35 0.15
156 1 0.00
157 44 0.19
158 83 0.36
159 56 0.24
160 9 0.04
161 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (154 bp):
TGCCAAATCATGAAAAGAATGGAGATTATTATGAGAATCTATTGTCTCAATTAATAGATGAACTT
TGATTCTAAGGAAAATGTAGAAAGAAAAGCTTTCTTATGAAACAAAAGCATCAATATCGTGTGTC
CCAAAGAAAAGAATTGGTTTATGG
Found at i:2342909 original size:13 final size:13
Alignment explanation
Indices: 2342891--2342915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2342881 CATTATGCTT
2342891 TGTATCGATACAA
1 TGTATCGATACAA
2342904 TGTATCGATACA
1 TGTATCGATACA
2342916 TGATCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2342928 original size:19 final size:20
Alignment explanation
Indices: 2342900--2342955 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
2342890 TTGTATCGAT
2342900 ACAA-TGTATCGATACAT-G
1 ACAATTGTATCGATACATGG
2342918 ATC-ATTGTATCGATACATGG
1 A-CAATTGTATCGATACATGG
2342938 ACAATTGTATCGATACAT
1 ACAATTGTATCGATACAT
2342956 AAAACTGGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.06
19 15 0.44
20 17 0.50
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (20 bp):
ACAATTGTATCGATACATGG
Found at i:2342931 original size:32 final size:33
Alignment explanation
Indices: 2342872--2342934 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
2342862 ACACCCAGAA
* *
2342872 GTATCGATACATTATGCTTTGTATCGATACAAT
1 GTATCGATACATGATGCATTGTATCGATACAAT
2342905 GTATCGATACATGAT-CATTGTATCGATACA
1 GTATCGATACATGATGCATTGTATCGATACA
2342935 TGGACAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (33 bp):
GTATCGATACATGATGCATTGTATCGATACAAT
Found at i:2343010 original size:20 final size:20
Alignment explanation
Indices: 2342985--2343038 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
2342975 CTACCATTGT
*
2342985 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
2343005 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
2343025 TTGTATCGATACAT
1 TTGTATCGATACAT
2343039 TGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:2349368 original size:20 final size:22
Alignment explanation
Indices: 2349334--2349374 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
2349324 ACAAATTTCC
*
2349334 TCATTTTTACTTCAAA-TCACT
1 TCATTTTTACATCAAAGTCACT
2349355 TCATTTTT-CATCAAAGTCAC
1 TCATTTTTACATCAAAGTCAC
2349375 CAACAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.44
Consensus pattern (22 bp):
TCATTTTTACATCAAAGTCACT
Found at i:2351124 original size:24 final size:24
Alignment explanation
Indices: 2351054--2351123 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
2351044 TGCTATAACA
*
2351054 AAAAAGGGAAGAAATATTGCTTTC
1 AAAAAGGGAAGAAATATTGTTTTC
*** * *
2351078 AAAAATAAAATAAATATTGTTTTG
1 AAAAAGGGAAGAAATATTGTTTTC
2351102 AAAAAGGGAA-AAATATTGTTTT
1 AAAAAGGGAAGAAATATTGTTTT
2351124 TTGGAGAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 12 0.32
24 25 0.68
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.31
Consensus pattern (24 bp):
AAAAAGGGAAGAAATATTGTTTTC
Found at i:2351769 original size:13 final size:13
Alignment explanation
Indices: 2351751--2351775 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2351741 CATTATGTTT
2351751 TGTATCGATACAA
1 TGTATCGATACAA
2351764 TGTATCGATACA
1 TGTATCGATACA
2351776 TGATCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2351806 original size:20 final size:20
Alignment explanation
Indices: 2351764--2351816 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
2351754 ATCGATACAA
*
2351764 TGTATCGATACAT-GATCAT
1 TGTATCGATACATGGATAAT
2351783 TGTATCGATACATGGATAAT
1 TGTATCGATACATGGATAAT
*
2351803 TGTATCAATACATG
1 TGTATCGATACATG
2351817 AAACTGACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATGGATAAT
Found at i:2351879 original size:13 final size:13
Alignment explanation
Indices: 2351861--2351913 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
2351851 CGATACATGG
2351861 TACATTGTATCGA
1 TACATTGTATCGA
*
2351874 TACATTGTATTGA
1 TACATTGTATCGA
2351887 TACA-TG-AT-G-
1 TACATTGTATCGA
2351896 -A-ATTGTATCGA
1 TACATTGTATCGA
2351907 TACATTG
1 TACATTG
2351914 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:2351889 original size:33 final size:33
Alignment explanation
Indices: 2351845--2351913 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
2351835 CTACCACTGT
*
2351845 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCGATACATGATGA-ATTGTATCGATACA
*
2351878 TTGTATTGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTGTATCGATACA
2351911 TTG
1 TTG
2351914 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTGTATCGATACA
Found at i:2362638 original size:12 final size:11
Alignment explanation
Indices: 2362612--2362649 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
2362602 TTGAAAAGGG
*
2362612 AATTTCATGAA
1 AATTTTATGAA
2362623 AATTTTATGAA
1 AATTTTATGAA
*
2362634 AAATTT-TGAA
1 AATTTTATGAA
2362644 AATTTT
1 AATTTT
2362650 GGAAAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (11 bp):
AATTTTATGAA
Found at i:2362644 original size:21 final size:20
Alignment explanation
Indices: 2362619--2362657 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
2362609 GGGAATTTCA
*
2362619 TGAAAATTTTATGAAAAATTT
1 TGAAAATTTT-GGAAAAATTT
2362640 TGAAAATTTTGGAAAAAT
1 TGAAAATTTTGGAAAAAT
2362658 CATCTAGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
TGAAAATTTTGGAAAAATTT
Found at i:2367110 original size:20 final size:21
Alignment explanation
Indices: 2367074--2367112 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
2367064 TTGCACATGT
2367074 TAAAATGCATGGAACATGGCA
1 TAAAATGCATGGAACATGGCA
2367095 TAAAATGCAT-GAACATGG
1 TAAAATGCATGGAACATGG
2367113 GCTGTTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.21
Consensus pattern (21 bp):
TAAAATGCATGGAACATGGCA
Found at i:2371335 original size:158 final size:159
Alignment explanation
Indices: 2371160--2371585 Score: 463
Period size: 158 Copynumber: 2.7 Consensus size: 159
2371150 GAAAAGAATG
* *
2371160 GAGATTATTATGAGAATCCATAATTGTTGC-CA-TTGATTGATGAACTTTGATTCTAAAAAAAAT
1 GAGATTATTATGAGAATCCAT-ATT-TGGCTCATTTGATAGATGAACTTTGATTCTAAAAAAAAT
* * * *
2371223 GGTTTAAAGAAAAGATTTTCCAATGAAATCAAAACATCAATATCATGCTTCTTAATAAGGACAAA
64 GGTTTAAAGAAAAGATGTTCCAATGAAACCAAAACATCAATATCATACTTCCTAATAAGGACAAA
* *
2371288 TGGTTTATGTTGCCCAATCACAAAAAAAGTA
129 TGGTTTATGGTGCCCAATCACAAAAAAAGCA
* * * * * * *
2371319 GAGA-TATTATAAGAATCCATGTTTGGCTTATTTGATAGTTTAACTTTGATTCTAAAGAATATGG
1 GAGATTATTATGAGAATCCATATTTGGCTCATTTGATAGATGAACTTTGATTCTAAAAAAAATGG
* * * * * *
2371383 TTTAAAGAAAGGATGTTCCTATGAACCCAAAGCATCAATATCATATTTCCTAATAAGGAGAAATG
66 TTTAAAGAAAAGATGTTCCAATGAAACCAAAACATCAATATCATACTTCCTAATAAGGACAAATG
2371448 GTTTATGGTGCCCAATCACAAAAAAAGCA
131 GTTTATGGTGCCCAATCACAAAAAAAGCA
* * * * *
2371477 AAGATTTATTATGAGAATCCATGTTTGTCTCATTTGATAG-TCAAACTTTGATTCTAAGGAAATA
1 GAGA-TTATTATGAGAATCCATATTTGGCTCATTTGATAGAT-GAACTTTGATTCTAA--AAAAA
* * * *
2371541 A-GG--GAAAGAAAAGCCT-TTCTAGTGAAACCAAAACATCAATATCAT
62 ATGGTTTAAAGAAAAG-ATGTTCCAATGAAACCAAAACATCAATATCAT
2371586 GTATCCCATT
Statistics
Matches: 222, Mismatches: 37, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 128 0.58
159 37 0.17
160 46 0.21
161 2 0.01
162 3 0.01
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (159 bp):
GAGATTATTATGAGAATCCATATTTGGCTCATTTGATAGATGAACTTTGATTCTAAAAAAAATGG
TTTAAAGAAAAGATGTTCCAATGAAACCAAAACATCAATATCATACTTCCTAATAAGGACAAATG
GTTTATGGTGCCCAATCACAAAAAAAGCA
Found at i:2374058 original size:3 final size:3
Alignment explanation
Indices: 2374050--2374080 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
2374040 GGTGATGAAT
*
2374050 ATG ATG ATG ATG ATG ATG ATG ATG GTG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
2374081 AGTTGATGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:2380714 original size:42 final size:42
Alignment explanation
Indices: 2380659--2380777 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2380649 TTCTTCTCTC
* *
2380659 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2380701 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2380743 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2380778 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2380718 original size:12 final size:11
Alignment explanation
Indices: 2380692--2380767 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2380682 TCTATTATCT
*
2380692 CTCCTGTCTCTC
1 CTCCTATCTC-C
2380704 CTCCTATCATCC
1 CTCCTATC-TCC
2380716 CTCCTATCT--
1 CTCCTATCTCC
*
2380725 CTACTATCT--
1 CTCCTATCTCC
*
2380734 CTCCTGTCTCTC
1 CTCCTATCTC-C
2380746 CTCCTATCATCC
1 CTCCTATC-TCC
*
2380758 CTCCTCTCTC
1 CTCCTATCTC
2380768 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2380719 original size:24 final size:24
Alignment explanation
Indices: 2380683--2380768 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2380673 CCTCCTCTCT
* *
2380683 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2380707 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2380728 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2380749 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2380769 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2380743 original size:18 final size:18
Alignment explanation
Indices: 2380674--2380744 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2380664 CCTGTCATCC
* *
2380674 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2380692 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2380714 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2380734 CTCCTGTCTCT
1 CTCCTGTCTCT
2380745 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2388257 original size:13 final size:13
Alignment explanation
Indices: 2388239--2388264 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2388229 CAATTTTTTG
2388239 TGTATCGATACAT
1 TGTATCGATACAT
2388252 TGTATCGATACAT
1 TGTATCGATACAT
2388265 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2389036 original size:21 final size:21
Alignment explanation
Indices: 2388973--2389036 Score: 87
Period size: 20 Copynumber: 3.1 Consensus size: 21
2388963 CTCCCCTTTA
* *
2388973 TCTCCCCCGTTTATTAA-TAAT
1 TCTCCCCC-TTAATCAAGTAAT
2388994 TCTCCCCCTTAATCAAGT-AT
1 TCTCCCCCTTAATCAAGTAAT
2389014 TCTCCCCCTTAATCAAGTAAT
1 TCTCCCCCTTAATCAAGTAAT
2389035 TC
1 TC
2389037 ATATAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
20 26 0.67
21 13 0.33
ACGTcount: A:0.25, C:0.33, G:0.05, T:0.38
Consensus pattern (21 bp):
TCTCCCCCTTAATCAAGTAAT
Found at i:2390681 original size:21 final size:21
Alignment explanation
Indices: 2390657--2390703 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
2390647 TTTGATGCTG
2390657 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
2390677 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
2390698 ATTTTG
1 ATTTTG
2390704 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:2390842 original size:13 final size:13
Alignment explanation
Indices: 2390824--2390849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2390814 ATAATCACCC
2390824 TGTATCGATACAA
1 TGTATCGATACAA
2390837 TGTATCGATACAA
1 TGTATCGATACAA
2390850 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2392950 original size:15 final size:15
Alignment explanation
Indices: 2392930--2392960 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2392920 ATTTCGTTTG
*
2392930 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2392945 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2392960 G
1 G
2392961 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2394793 original size:21 final size:21
Alignment explanation
Indices: 2394764--2394808 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
2394754 AAGTTTTCAT
*
2394764 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2394784 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2394806 TTT
1 TTT
2394809 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2397045 original size:13 final size:13
Alignment explanation
Indices: 2397027--2397052 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2397017 CAATTTTTTG
2397027 TGTATCGATACAT
1 TGTATCGATACAT
2397040 TGTATCGATACAT
1 TGTATCGATACAT
2397053 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2397776 original size:18 final size:19
Alignment explanation
Indices: 2397743--2397808 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 19
2397733 ACACCCAGAT
2397743 GTATCGATACATATTGCT-TA
1 GTATCGAT--ATATTGCTATA
*
2397763 GTATCGATATATTG-TATC
1 GTATCGATATATTGCTATA
*
2397781 GTATCGATACA-TGCTCATA
1 GTATCGATATATTGCT-ATA
2397800 GTATCGATA
1 GTATCGATA
2397809 CACCCTGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.08
18 18 0.45
19 11 0.28
20 8 0.20
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (19 bp):
GTATCGATATATTGCTATA
Found at i:2397805 original size:19 final size:19
Alignment explanation
Indices: 2397781--2397930 Score: 67
Period size: 19 Copynumber: 7.6 Consensus size: 19
2397771 ATATTGTATC
2397781 GTATCGATACATGCTCATA
1 GTATCGATACATGCTCATA
** * *
2397800 GTATCGATACACCCTGAAAA
1 GTATCGATACATGCT-CATA
*
2397820 GTATCGATACATGAAACTGATA
1 GTATCGATACATG---CTCATA
*
2397842 GTAGCTACCATACCACTGCT--T-
1 GTA--T-CGATA-CA-TGCTCATA
** *
2397863 GTATCGATACATATTGCTTA
1 GTATCGATACATGCT-CATA
* *
2397883 GTATCGATATATTG-T-ATC
1 GTATCGATACA-TGCTCATA
2397901 GTATCGATACATGCTCATA
1 GTATCGATACATGCTCATA
2397920 GTATCGATACA
1 GTATCGATACA
2397931 CCCTGAAAAG
Statistics
Matches: 97, Mismatches: 18, Indels: 32
0.66 0.12 0.22
Matches are distributed among these distances:
16 2 0.02
17 4 0.04
18 16 0.16
19 28 0.29
20 24 0.25
21 4 0.04
22 6 0.06
23 2 0.02
24 3 0.03
25 4 0.04
26 2 0.02
27 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (19 bp):
GTATCGATACATGCTCATA
Found at i:2397810 original size:57 final size:57
Alignment explanation
Indices: 2397743--2397930 Score: 177
Period size: 57 Copynumber: 3.2 Consensus size: 57
2397733 ACACCCAGAT
2397743 GTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATA
1 GTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATA
*** *** * * *
2397800 GTATCGATACACCCTGAAAAGTATCGATACA-TGAAACTGATAGTAGCTACCATACCACTGCT--
1 GTATCGATACATATTGCTTAGTATCGATATATTG----T-ATCGTA--T-CGATA-CA-TGCTCA
2397862 T-
56 TA
2397863 GTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATA
1 GTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATA
2397920 GTATCGATACA
1 GTATCGATACA
2397931 CCCTGAAAAG
Statistics
Matches: 99, Mismatches: 18, Indels: 28
0.68 0.12 0.19
Matches are distributed among these distances:
54 4 0.04
55 2 0.02
56 7 0.07
57 36 0.36
59 5 0.05
60 2 0.02
61 5 0.05
63 25 0.25
64 7 0.07
65 2 0.02
66 4 0.04
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (57 bp):
GTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATA
Found at i:2397830 original size:39 final size:39
Alignment explanation
Indices: 2397781--2397952 Score: 127
Period size: 39 Copynumber: 4.3 Consensus size: 39
2397771 ATATTGTATC
2397781 GTATCGATACATGCTCATAGTATCGATACACCCTGAAAA
1 GTATCGATACATGCTCATAGTATCGATACACCCTGAAAA
* * * ***
2397820 GTATCGATACATGAAACTGATAGTAGCTACCATAC-CACTG-CTT
1 GTATCGATACATG---CTCATAGTA--T-CGATACACCCTGAAAA
** * * * * **
2397863 GTATCGATACATATTGCTTAGTATCGATATA--TTGTATC
1 GTATCGATACATGCT-CATAGTATCGATACACCCTGAAAA
2397901 GTATCGATACATGCTCATAGTATCGATACACCCTGAAAA
1 GTATCGATACATGCTCATAGTATCGATACACCCTGAAAA
2397940 GTATCGATACATG
1 GTATCGATACATG
2397953 AAACTGACAG
Statistics
Matches: 99, Mismatches: 23, Indels: 22
0.69 0.16 0.15
Matches are distributed among these distances:
37 15 0.15
38 18 0.18
39 30 0.30
40 1 0.01
41 5 0.05
42 8 0.08
43 12 0.12
44 5 0.05
45 5 0.05
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (39 bp):
GTATCGATACATGCTCATAGTATCGATACACCCTGAAAA
Found at i:2397896 original size:18 final size:19
Alignment explanation
Indices: 2397863--2397928 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 19
2397853 ACCACTGCTT
2397863 GTATCGATACATATTGCT-TA
1 GTATCGAT--ATATTGCTATA
*
2397883 GTATCGATATATTG-TATC
1 GTATCGATATATTGCTATA
*
2397901 GTATCGATACA-TGCTCATA
1 GTATCGATATATTGCT-ATA
2397920 GTATCGATA
1 GTATCGATA
2397929 CACCCTGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.08
18 18 0.45
19 11 0.28
20 8 0.20
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (19 bp):
GTATCGATATATTGCTATA
Found at i:2397955 original size:120 final size:120
Alignment explanation
Indices: 2397742--2397994 Score: 479
Period size: 120 Copynumber: 2.1 Consensus size: 120
2397732 CACACCCAGA
2397742 TGTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATAGTATCGA
1 TGTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATAGTATCGA
*
2397807 TACACCCTGAAAAGTATCGATACATGAAACTGATAGTAGCTACCATACCACTGCT
66 TACACCCTGAAAAGTATCGATACATGAAACTGACAGTAGCTACCATACCACTGCT
2397862 TGTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATAGTATCGA
1 TGTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATAGTATCGA
*
2397927 TACACCCTGAAAAGTATCGATACATGAAACTGACAGTAGCTACCCTACCACTGCT
66 TACACCCTGAAAAGTATCGATACATGAAACTGACAGTAGCTACCATACCACTGCT
*
2397982 TGTATTGATACAT
1 TGTATCGATACAT
2397995 GGTGAAATGT
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 130 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (120 bp):
TGTATCGATACATATTGCTTAGTATCGATATATTGTATCGTATCGATACATGCTCATAGTATCGA
TACACCCTGAAAAGTATCGATACATGAAACTGACAGTAGCTACCATACCACTGCT
Found at i:2399175 original size:159 final size:159
Alignment explanation
Indices: 2398864--2399221 Score: 409
Period size: 159 Copynumber: 2.3 Consensus size: 159
2398854 AAAAAGGATG
* *
2398864 AACTTTGATTCTAAGGAAAATGATGGAAAGAAAAGC-TTTCTTGCAAAATCAAAGCATCAATATC
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTAGCAAAATCAAAGCATCAATATC
* ** * * *
2398928 ATGTATCCTAATGATGAAAATGTGTTTATGGTGCCCAATCTTGAAAAGAATGGAGATCATTACAA
66 ATGTATCCTAAAGAAAAAAATGGGTTTATGGTGCCCAATCATAAAAAGAATGGAGATCATTACAA
* * * *
2398993 GAATCCATGTTTGTCTCGATTGATAGACA
131 AAATCCAAGTATGACTCGATTGATAGACA
** * * * * *
2399022 AACTTTTTTTTTAAGGAAAATGGTGAAAAGAAAAGCTTTTCTAGTAAAA-CTAAATCATCAATTT
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTAGCAAAATC-AAAGCATCAATAT
* * *
2399086 CATGTTTCCTAAAGAAAAAAATGGGTTTATGGTGCCTAATCATAAAAAGAATGGAGATTATT-CT
65 CATGTATCCTAAAGAAAAAAATGGGTTTATGGTGCCCAATCATAAAAAGAATGGAGATCATTAC-
* * *
2399150 AAAAATCCAAGTATGACT-TACTTGATGGACG
129 AAAAATCCAAGTATGACTCGA-TTGATAGACA
* *
2399181 AACTTTGATTCTAAAGAAAATGGGGGAAAGAAAAGCATTTT
1 AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGC-TTTT
2399222 GTGCAAACTT
Statistics
Matches: 164, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 34 0.21
159 126 0.77
160 4 0.02
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (159 bp):
AACTTTGATTCTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTAGCAAAATCAAAGCATCAATATC
ATGTATCCTAAAGAAAAAAATGGGTTTATGGTGCCCAATCATAAAAAGAATGGAGATCATTACAA
AAATCCAAGTATGACTCGATTGATAGACA
Found at i:2400901 original size:61 final size:59
Alignment explanation
Indices: 2400789--2401391 Score: 319
Period size: 61 Copynumber: 10.5 Consensus size: 59
2400779 CTAATGTGTA
* * * * * * * * *
2400789 GATTCAAGGCCTGTAACACTGGACTTAAAGATGATAAAGATAAGAAGAGTGCCAATGTGTT
1 GATTCAAGGCCAGTGATATTGGACTT-AAGATGA-GAAGATGATAAAAGTGCCAATATGTT
* * *
2400850 GATTCAAGGCCAGTGACATTGGACTTCAAGATGAGAAGTATGATAAAAGTGCCGATATGCT
1 GATTCAAGGCCAGTGATATTGGACTT-AAGATGAGAAG-ATGATAAAAGTGCCAATATGTT
* * * * * *
2400911 GATTCATGGCCAGTGATATTGGGC-T----T--GAAGATGACAAAAATGCCAATGTGCT
1 GATTCAAGGCCAGTGATATTGGACTTAAGATGAGAAGATGATAAAAGTGCCAATATGTT
* * * * *
2400963 AATTCAAGGCTAGTGACATTGGACTTAAGGATGAGAAGAACGATAAAAGTGCCAATATGCT
1 GATTCAAGGCCAGTGATATTGGACTTAA-GATGAGAAG-ATGATAAAAGTGCCAATATGTT
* * * * * ** *
2401024 CATTCAAAGCCAGTGATATTGGATTTAAAAATGACAAAGGATGATAAAAGTGCTGATATGCT
1 GATTCAAGGCCAGTGATATTGGACTT-AAGATGA-GAA-GATGATAAAAGTGCCAATATGTT
* * * * * * *
2401086 GATTCACA-GCTAGCGATATCAGG-CTTGAAAATGAGAAGAATGATAAAGGTGCTAATATTTT
1 GATTCA-AGGCCAGTGATAT-TGGACTT-AAGATGAGAAG-ATGATAAAAGTGCCAATATGTT
* * * * **
2401147 GATTCAAGGCTAGCGATATTGGAC-T----T-A-AAGATGACAAAGGTGATAATATGTT
1 GATTCAAGGCCAGTGATATTGGACTTAAGATGAGAAGATGATAAAAGTGCCAATATGTT
* * * * * * * *
2401199 GATTTAAGGCCAGCGATATTAGACTGAAAGATGAGAAGAACGATAAAGGTGCCGATATGCT
1 GATTCAAGGCCAGTGATATTGGACT-TAAGATGAGAAG-ATGATAAAAGTGCCAATATGTT
* * * *
2401260 GATTCAAGGCTAGTGATATTGGACTTAA-A--A-AAGA--A-AAAAGTGCGAATGTATT
1 GATTCAAGGCCAGTGATATTGGACTTAAGATGAGAAGATGATAAAAGTGCCAATATGTT
* * * *
2401312 GATTCAAGGCCAATGACATTGGGCTT---A-GA-AAGA-GAAAAAAGTGCCAATATGTT
1 GATTCAAGGCCAGTGATATTGGACTTAAGATGAGAAGATGATAAAAGTGCCAATATGTT
*
2401365 GATTCAAGGCCAGCGATATTGGACTTA
1 GATTCAAGGCCAGTGATATTGGACTTA
2401392 GAAAGAGATT
Statistics
Matches: 427, Mismatches: 84, Indels: 69
0.74 0.14 0.12
Matches are distributed among these distances:
50 1 0.00
51 5 0.01
52 111 0.26
53 45 0.11
54 1 0.00
55 3 0.01
56 3 0.01
57 1 0.00
58 2 0.00
59 2 0.00
60 18 0.04
61 185 0.43
62 46 0.11
63 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (59 bp):
GATTCAAGGCCAGTGATATTGGACTTAAGATGAGAAGATGATAAAAGTGCCAATATGTT
Found at i:2400996 original size:52 final size:52
Alignment explanation
Indices: 2400884--2401061 Score: 122
Period size: 52 Copynumber: 3.2 Consensus size: 52
2400874 TTCAAGATGA
* * * * * * *
2400884 GAAGTATGATAAAAGTGCCGATATGCTGATTCATGGCCAGTGATATTGGGCTT
1 GAAG-ATGACAAAAATGCCAATATGCTAATTCAAGGCCAGTGACATTGGACTT
* *
2400937 GAAGATGACAAAAATGCCAATGTGCTAATTCAAGGCTAGTGACATTGGACTT
1 GAAGATGACAAAAATGCCAATATGCTAATTCAAGGCCAGTGACATTGGACTT
* * * * *
2400989 AAGGATGAGAAGAACGATAAAAGTGCCAATATGCTCATTCAAAGCCAGTGATATTGGATTT
1 ---GA--AGATG-AC-A-AAAA-TGCCAATATGCTAATTCAAGGCCAGTGACATTGGACTT
* *
2401050 AAAAATGACAAA
1 GAAGATGACAAA
2401062 GGATGATAAA
Statistics
Matches: 97, Mismatches: 19, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
52 39 0.40
53 6 0.06
54 1 0.01
55 4 0.04
56 3 0.03
57 4 0.04
58 3 0.03
59 1 0.01
60 4 0.04
61 32 0.33
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (52 bp):
GAAGATGACAAAAATGCCAATATGCTAATTCAAGGCCAGTGACATTGGACTT
Found at i:2401058 original size:113 final size:113
Alignment explanation
Indices: 2400838--2401391 Score: 331
Period size: 113 Copynumber: 4.9 Consensus size: 113
2400828 ATAAGAAGAG
* * * *
2400838 TGCCAATGTGTTGATTCAAGGCCAGTGACATTGGACTTCAAGATGAGAAGTATGATAAAAGTGCC
1 TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTCAAGATGAGAAGAACGATAAAAGTGCC
* * ** * * *
2400903 GATATGCTGATTCATGGCCAGTGATATTGGGCTTGAAGATGACAAAAA
66 AATATGCTCATTCAAAGCCAGTGATATTGGACTTAAAAATGACAAAAA
*
2400951 TGCCAATGTGCTAATTCAAGGCTAGTGACATTGGACTT-AAGGATGAGAAGAACGATAAAAGTGC
1 TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTCAA-GATGAGAAGAACGATAAAAGTGC
*
2401015 CAATATGCTCATTCAAAGCCAGTGATATTGGATTTAAAAATGACAAAGGATGATAAAA
65 CAATATGCTCATTCAAAGCCAGTGATATTGGACTTAAAAATGAC--------A-AAAA
** * * * * * * * * * *
2401073 GTGCTGATATGCTGATTCACA-GCTAGCGATATCAGG-CTTGAAAATGAGAAGAATGATAAAGGT
1 -TGCCAATGTGCTAATTCA-AGGCCAGTGACAT-TGGACTTCAAGATGAGAAGAACGATAAAAGT
* ** * * * * * **
2401136 GCTAATATTTTGATTCAAGGCTAGCGATATTGGACTTAAAGATGACAAAGG
63 GCCAATATGCTCATTCAAAGCCAGTGATATTGGACTTAAAAATGACAAAAA
** * * * * * * * ** *
2401187 TGATAATATGTTGATTTAAGGCCAGCGATATTAGACTGAAAGATGAGAAGAACGATAAAGGTGCC
1 TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTCAAGATGAGAAGAACGATAAAAGTGCC
* * * * *
2401252 GATATGCTGATTCAAGGCTAGTGATATTGGACTTAAAAAAGA-AAAAA
66 AATATGCTCATTCAAAGCCAGTGATATTGGACTTAAAAATGACAAAAA
* ** * * * *
2401299 GTGCGAATGTATTGATTCAAGGCCAATGACATTGGGCTT----A-GA-AAG-A-GAAAAAAGTGC
1 -TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTCAAGATGAGAAGAACGATAAAAGTGC
* * * *
2401356 CAATATGTTGATTCAAGGCCAGCGATATTGGACTTA
65 CAATATGCTCATTCAAAGCCAGTGATATTGGACTTA
2401392 GAAAGAGATT
Statistics
Matches: 353, Mismatches: 71, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
105 41 0.12
106 1 0.00
107 3 0.01
108 2 0.01
109 1 0.00
112 7 0.02
113 204 0.58
114 2 0.01
115 1 0.00
121 1 0.00
122 4 0.01
123 81 0.23
124 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.26
Consensus pattern (113 bp):
TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGACTTCAAGATGAGAAGAACGATAAAAGTGCC
AATATGCTCATTCAAAGCCAGTGATATTGGACTTAAAAATGACAAAAA
Found at i:2401194 original size:52 final size:52
Alignment explanation
Indices: 2401125--2401232 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 52
2401115 AATGAGAAGA
* * * * * *
2401125 ATGATAAAGGTGCTAATATTTTGATTCAAGGCTAGCGATATTGGACTTAAAG
1 ATGACAAAGGTGATAATATGTTGATTCAAGGCCAGCGATATTAGACTGAAAG
*
2401177 ATGACAAAGGTGATAATATGTTGATTTAAGGCCAGCGATATTAGACTGAAAG
1 ATGACAAAGGTGATAATATGTTGATTCAAGGCCAGCGATATTAGACTGAAAG
2401229 ATGA
1 ATGA
2401233 GAAGAACGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (52 bp):
ATGACAAAGGTGATAATATGTTGATTCAAGGCCAGCGATATTAGACTGAAAG
Found at i:2401321 original size:52 final size:53
Alignment explanation
Indices: 2401259--2401395 Score: 186
Period size: 53 Copynumber: 2.6 Consensus size: 53
2401249 GCCGATATGC
* * *
2401259 TGATTCAAGGCTAGTGATATTGGACTTA-AAAAAGAAAAAAGTGCGAATGTAT
1 TGATTCAAGGCCAGTGATATTGGACTTAGAAAAAGAAAAAAGTGCCAATATAT
* * * * *
2401311 TGATTCAAGGCCAATGACATTGGGCTTAGAAAGAGAAAAAAGTGCCAATATGT
1 TGATTCAAGGCCAGTGATATTGGACTTAGAAAAAGAAAAAAGTGCCAATATAT
*
2401364 TGATTCAAGGCCAGCGATATTGGACTTAGAAA
1 TGATTCAAGGCCAGTGATATTGGACTTAGAAA
2401396 GAGATTGTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
52 24 0.33
53 48 0.67
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (53 bp):
TGATTCAAGGCCAGTGATATTGGACTTAGAAAAAGAAAAAAGTGCCAATATAT
Found at i:2401371 original size:53 final size:53
Alignment explanation
Indices: 2401247--2401399 Score: 182
Period size: 53 Copynumber: 2.9 Consensus size: 53
2401237 AACGATAAAG
* * * * * *
2401247 GTGCCGATATGCTGATTCAAGGCTAGTGATATTGGACTTA-AAAAAGAAAAAA
1 GTGCCAATATGTTGATTCAAGGCCAATGACATTGGACTTAGAAAGAGAAAAAA
* * * *
2401299 GTGCGAATGTATTGATTCAAGGCCAATGACATTGGGCTTAGAAAGAGAAAAAA
1 GTGCCAATATGTTGATTCAAGGCCAATGACATTGGACTTAGAAAGAGAAAAAA
** *
2401352 GTGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAGAAAGAGA
1 GTGCCAATATGTTGATTCAAGGCCAATGACATTGGACTTAGAAAGAGA
2401400 TTGTTTGATA
Statistics
Matches: 83, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
52 31 0.37
53 52 0.63
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.24
Consensus pattern (53 bp):
GTGCCAATATGTTGATTCAAGGCCAATGACATTGGACTTAGAAAGAGAAAAAA
Found at i:2401503 original size:32 final size:32
Alignment explanation
Indices: 2401459--2401617 Score: 221
Period size: 32 Copynumber: 5.0 Consensus size: 32
2401449 TAGAAAAAGA
* * *
2401459 TGCCACCAACTTGTGTGGGCTTTTGAGAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
2401491 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
*
2401523 TGCCATCGACTTGTGTGGGCTTTAGAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
* **
2401555 TTCCATTGACTTGTGTGGGCTTTAGAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
* * *
2401587 TGCCACCAACTTATGTGGGCTTT-GAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
2401618 GCAACTAACT
Statistics
Matches: 115, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 7 0.06
32 108 0.94
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.31
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
Found at i:2401665 original size:56 final size:56
Alignment explanation
Indices: 2401568--2402008 Score: 296
Period size: 56 Copynumber: 7.7 Consensus size: 56
2401558 CATTGACTTG
* * * * *
2401568 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTATGTGGGCTTTGAAAAGGTGCAACTAACT
1 TGTGGGCTTT-GA-AAGGATGCCACTAAC-T-CGTGGGCTTTGAAAAGGTGCCACTGACT
*
2401628 CGTGGGCTTTGAAAGTG-TGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
*** * * * * * *
2401684 CACGGGCTTTAAAAGGGTGCCACTAACTTGTGGCCTTTAAAAATGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
* * * * * *
2401740 TATGGGGTTTTGAAAGGAGGCCACTAACTCATGGGCTTTAAGAAAGGATGCCCCTGACT
1 TGT-GGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGA-AAAGG-TGCCACTGACT
* ** * * **
2401799 TGTGGGCTTTAAGAAAGGATGCCACTGACTTATGGCCTTTGAAAGGGTGCCTTTGACT
1 TGTGGGCTTT--GAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
* ** * * * * *
2401857 TGTGGCCTTTGAAAGGATGCCACTAACTTATAGACTTCGAAGAGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
** * * * ** * * *
2401913 TGTGAACTTCGAAGAGG-TGCCACTGACTTGTGAACTTCGAAGAGGTGCCATTGACT
1 TGTGGGCTTTGAA-AGGATGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
** *
2401969 TGTGAACTTCGAAGAGG-TGCCACTAAC-CAGTGGGCTTTGA
1 TGTGGGCTTTGAA-AGGATGCCACTAACTC-GTGGGCTTTGA
2402009 GAGAGGATTT
Statistics
Matches: 319, Mismatches: 53, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
55 1 0.00
56 191 0.60
57 34 0.11
58 40 0.13
59 19 0.06
60 34 0.11
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:2401885 original size:28 final size:27
Alignment explanation
Indices: 2401568--2402008 Score: 243
Period size: 28 Copynumber: 15.4 Consensus size: 27
2401558 CATTGACTTG
*
2401568 TGTGGGCTTTAGAGAAGGTTGCCACCAACTT
1 TGTGGGCTTT-GA-AAGG-TGCCACTAAC-T
*
2401599 ATGTGGGCTTTGAAAAGGTGCAACTAACT
1 -TGTGGGCTTTG-AAAGGTGCCACTAACT
*
2401628 CGTGGGCTTTGAAAGTGTGCCACTAACT
1 TGTGGGCTTTGAAAG-GTGCCACTAACT
* *
2401656 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
*** *
2401684 CACGGGCTTTAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAA-GGTGCCACTAACT
* * * *
2401712 TGTGGCCTTTAAAAATGTGCCACTGACT
1 TGTGGGCTTT-GAAAGGTGCCACTAACT
* * *
2401740 TATGGGGTTTTGAAAGGAGGCCACTAACT
1 TGT-GGGCTTTGAAAGG-TGCCACTAACT
** * *
2401769 CATGGGCTTTAAGAAAGGATGCCCCTGACT
1 TGTGGGCTTT--GAAAGG-TGCCACTAACT
*
2401799 TGTGGGCTTTAAGAAAGGATGCCACTGACT
1 TGTGGGCTTT--GAAAGG-TGCCACTAACT
* * ** *
2401829 TATGGCCTTTGAAAGGGTGCCTTTGACT
1 TGTGGGCTTTGAAA-GGTGCCACTAACT
*
2401857 TGTGGCCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGG-TGCCACTAACT
* * * * * *
2401885 TATAGACTTCGAAGAGGTGCCATTGACT
1 TGTGGGCTTTGAA-AGGTGCCACTAACT
** * *
2401913 TGTGAACTTCGAAGAGGTGCCACTGACT
1 TGTGGGCTTTGAA-AGGTGCCACTAACT
** * * *
2401941 TGTGAACTTCGAAGAGGTGCCATTGACT
1 TGTGGGCTTTGAA-AGGTGCCACTAACT
** * *
2401969 TGTGAACTTCGAAGAGGTGCCACTAACC
1 TGTGGGCTTTGAA-AGGTGCCACTAACT
*
2401997 AGTGGGCTTTGA
1 TGTGGGCTTTGA
2402009 GAGAGGATTT
Statistics
Matches: 341, Mismatches: 56, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
27 9 0.03
28 228 0.67
29 30 0.09
30 58 0.17
31 5 0.01
32 11 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (27 bp):
TGTGGGCTTTGAAAGGTGCCACTAACT
Found at i:2403341 original size:19 final size:17
Alignment explanation
Indices: 2403319--2403368 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
2403309 GGACCCCTCT
2403319 TTTTTTGTTTTTGCTCTTC
1 TTTTTTGTTTTTG-T-TTC
*
2403338 TTTTTTGTTTGTTTGTTTT
1 TTTTTTG-TT-TTTGTTTC
2403357 TTTTTTGTTTTT
1 TTTTTTGTTTTT
2403369 TAAGAAGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.11
18 2 0.07
19 16 0.57
20 3 0.11
21 4 0.14
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.82
Consensus pattern (17 bp):
TTTTTTGTTTTTGTTTC
Found at i:2406860 original size:32 final size:33
Alignment explanation
Indices: 2406798--2406862 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
2406788 CACACCTAGA
*
2406798 TGTATCAATACATATTGCTTTGTATTGATACAT
1 TGTATCAATACATATTGCTTGGTATTGATACAT
* *
2406831 TGTATCGATACATGTT-CTTGGTATTGATACAT
1 TGTATCAATACATATTGCTTGGTATTGATACAT
2406863 AGTGAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCAATACATATTGCTTGGTATTGATACAT
Found at i:2406879 original size:20 final size:18
Alignment explanation
Indices: 2406829--2406882 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
2406819 GTATTGATAC
*
2406829 ATTGTATCGATACATGTT
1 ATTGTATCGATACATGTA
* *
2406847 CTTGGTATTGATACATAGTGA
1 ATT-GTATCGATACAT-GT-A
2406868 ATTGTATCGATACAT
1 ATTGTATCGATACAT
2406883 TGAGCCCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 2 0.07
19 11 0.39
20 13 0.46
21 2 0.07
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (18 bp):
ATTGTATCGATACATGTA
Found at i:2407171 original size:34 final size:35
Alignment explanation
Indices: 2407132--2407203 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 35
2407122 AATTTCTACA
* *
2407132 TTTCAAAGAGCTTTTGTATT-CTTTATTTTTATTC
1 TTTCAAAGAGCATTTGTATTCCTTTATGTTTATTC
** *
2407166 TTTCAAAGCTCATTTGTATTCCTTTGTGTTTATTC
1 TTTCAAAGAGCATTTGTATTCCTTTATGTTTATTC
2407201 TTT
1 TTT
2407204 TCACAAACAC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.18, C:0.14, G:0.10, T:0.58
Consensus pattern (35 bp):
TTTCAAAGAGCATTTGTATTCCTTTATGTTTATTC
Found at i:2408471 original size:3 final size:3
Alignment explanation
Indices: 2408463--2408505 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
2408453 AACCATTAAA
*
2408463 GAT GAT GAT AAT GAT GAT GAT GA- GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
2408506 AGTTGACTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:2408491 original size:20 final size:20
Alignment explanation
Indices: 2408466--2408505 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
2408456 CATTAAAGAT
2408466 GATGATAATGATGATGATGA
1 GATGATAATGATGATGATGA
*
2408486 GATGATGATGATGATGATGA
1 GATGATAATGATGATGATGA
2408506 AGTTGACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.30
Consensus pattern (20 bp):
GATGATAATGATGATGATGA
Found at i:2408492 original size:23 final size:23
Alignment explanation
Indices: 2408462--2408505 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
2408452 CAACCATTAA
2408462 AGATGATGATAATGATGATGATG
1 AGATGATGATAATGATGATGATG
*
2408485 AGATGATGATGATGATGATGA
1 AGATGATGATAATGATGATGA
2408506 AGTTGACTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.30
Consensus pattern (23 bp):
AGATGATGATAATGATGATGATG
Found at i:2414907 original size:37 final size:40
Alignment explanation
Indices: 2414833--2414907 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
2414823 TGTTTTTGCT
* *
2414833 ATAACAAAAGGAGAGAGAAATATTTGAAAATAAATTTTAG
1 ATAAAAAAAGGAGAGAGAAATATTTGAAAAGAAATTTTAG
* *
2414873 ATAAAAAAAGG-GAGAGATAT-TTTG-AAAGAGATTTT
1 ATAAAAAAAGGAGAGAGAAATATTTGAAAAGAAATTTT
2414908 TTTTTAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
37 9 0.29
38 4 0.13
39 8 0.26
40 10 0.32
ACGTcount: A:0.52, C:0.01, G:0.20, T:0.27
Consensus pattern (40 bp):
ATAAAAAAAGGAGAGAGAAATATTTGAAAAGAAATTTTAG
Found at i:2418660 original size:20 final size:20
Alignment explanation
Indices: 2418635--2418772 Score: 136
Period size: 20 Copynumber: 6.8 Consensus size: 20
2418625 AAAAAGACAT
2418635 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
*
2418655 AATGTATCGATACATTCATACG
1 AATGTATCGATACATTGA-A-G
*
2418677 --TGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAG
* * * **
2418695 AATGCATCTGGGTAAAAAGACAG
1 AATGTATC--GATACATTGA-AG
2418718 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
* *
2418738 AATGAATCGATACATTGAAA
1 AATGTATCGATACATTGAAG
2418758 AATGTATCGATACAT
1 AATGTATCGATACAT
2418773 CTGGGTACTT
Statistics
Matches: 94, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
19 1 0.01
20 71 0.76
21 7 0.07
22 7 0.07
23 8 0.09
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACATTGAAG
Found at i:2418764 original size:83 final size:83
Alignment explanation
Indices: 2418616--2418772 Score: 260
Period size: 83 Copynumber: 1.9 Consensus size: 83
2418606 TGTATTGATA
* * * **
2418616 CATCTGGGTAAAAAGACATAATGTATCGATACATTGAAGAATGTATCGATACATTCATACGTGTA
1 CATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAGAATGAATCGATACATTCAAAAATGTA
2418681 TCGATACATTGAAAAATG
66 TCGATACATTGAAAAATG
*
2418699 CATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAGAATGAATCGATACATTGAAAAATGTA
1 CATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAGAATGAATCGATACATTCAAAAATGTA
2418764 TCGATACAT
66 TCGATACAT
2418773 CTGGGTACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.27
Consensus pattern (83 bp):
CATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAGAATGAATCGATACATTCAAAAATGTA
TCGATACATTGAAAAATG
Done.