Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold179
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2991183
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.31
Warning! 65816 characters in sequence are not A, C, G, or T
File 5 of 18
Found at i:650417 original size:19 final size:18
Alignment explanation
Indices: 650358--650455 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
650348 ATTTCAACGA
650358 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
650377 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
650393 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
650409 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
650425 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
650441 TTTTGTATCGATACA
1 -TTTGTATCGATACA
650456 ATTTAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
19 24 0.36
20 12 0.18
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:650516 original size:13 final size:13
Alignment explanation
Indices: 650498--650522 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
650488 ATTACTCAAC
650498 TGTATCGATACAT
1 TGTATCGATACAT
650511 TGTATCGATACA
1 TGTATCGATACA
650523 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:654936 original size:51 final size:50
Alignment explanation
Indices: 654876--654991 Score: 187
Period size: 51 Copynumber: 2.3 Consensus size: 50
654866 ATTTTTGAGG
* * *
654876 GGATACTCCAACCCTGGTTTTATTTCTAAAGCACCAATTTTTCACAATCGA
1 GGATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTTTCACAATCGA
654927 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGA
1 GGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTTTCACAATCGA
654978 GGATACTCCAACCC
1 GGATACTCCAACCC
654992 CGTTATTTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
50 2 0.03
51 57 0.93
52 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.30
Consensus pattern (50 bp):
GGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGA
Found at i:655010 original size:28 final size:28
Alignment explanation
Indices: 654978--655049 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
654968 TCACAATCGA
654978 GGATACTCCAACCCCGTTATTTCATC-A-G
1 GGATACTCCAACCCCGTTATTT--TCGAGG
* *
655006 GGATACTCTAACCCTGTTATTTTCGAGG
1 GGATACTCCAACCCCGTTATTTTCGAGG
655034 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
655050 GCTTTATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 35 0.92
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTATTTTCGAGG
Found at i:655056 original size:107 final size:106
Alignment explanation
Indices: 654927--655232 Score: 357
Period size: 107 Copynumber: 2.9 Consensus size: 106
654917 TCACAATCGA
*
654927 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCC
* ** *
654992 CGTTATTTCATCAGGGATACTCTAACCCTGTTATTTTCGAGG
66 CGTTATTTCA-CAGGGATACTCCAACCCCATTAATTTCGAGG
** * * ** * * *
655034 GGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCACAATCGGGGATACTCCATCCC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCC
*
655099 CGTTATTTTCACAGTGATACTCCAACCCCATTAATTTCGAGG
66 CGTTA-TTTCACAGGGATACTCCAACCCCATTAATTTCGAGG
* * * *
655141 GGATACTCCAACCCCAATTTTATTTTCAAAACACCGA-TTTTCTATAATC-AGGGATACTCCAAC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-ACAATCGA-GGATACTCCAAC
*
655204 CCTGTTATTTC-CGAGAGGATACTCCAACC
64 CCCGTTATTTCAC-AG-GGATACTCCAACC
655233 TTGATTTTAT
Statistics
Matches: 164, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
105 1 0.01
106 10 0.06
107 148 0.90
108 5 0.03
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (106 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCC
CGTTATTTCACAGGGATACTCCAACCCCATTAATTTCGAGG
Found at i:655127 original size:28 final size:28
Alignment explanation
Indices: 655084--655156 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
655074 CTCACAATCG
* * *
655084 GGGATACTCCATCCCCGTTATTTTC-ACA
1 GGGATACTCCAACCCCATTAATTTCGA-A
* *
655112 GTGATACTCCAACCCCATTAATTTCGAG
1 GGGATACTCCAACCCCATTAATTTCGAA
655140 GGGATACTCCAACCCCA
1 GGGATACTCCAACCCCA
655157 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
GGGATACTCCAACCCCATTAATTTCGAA
Found at i:655197 original size:79 final size:79
Alignment explanation
Indices: 655114--655278 Score: 208
Period size: 79 Copynumber: 2.1 Consensus size: 79
655104 TTTTCACAGT
* * *
655114 GATACTCCAACCCCATTAATTT-CGAGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCGA
1 GATACTCCAACCCCATT-ATTTCCGAGAGGATACTCCAACCCCAATTTTATTTCCAAAACACCAA
655178 -TTTTCTATAATCAGG
65 TTTTTC-ATAATCAGG
** *** *
655193 GATACTCCAACCCTGTTATTTCCGAGAGGATACTCCAACCTTGATTTTATTTCCAGAACACCAAT
1 GATACTCCAACCCCATTATTTCCGAGAGGATACTCCAACCCCAATTTTATTTCCAAAACACCAAT
*
655258 TTTTCATAATCGGG
66 TTTTCATAATCAGG
655272 GATACTC
1 GATACTC
655279 TAGCCCCGTT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 4 0.05
79 65 0.88
80 5 0.07
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.32
Consensus pattern (79 bp):
GATACTCCAACCCCATTATTTCCGAGAGGATACTCCAACCCCAATTTTATTTCCAAAACACCAAT
TTTTCATAATCAGG
Found at i:661703 original size:50 final size:51
Alignment explanation
Indices: 661591--661704 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
661581 ATTTGCCCGC
* *
661591 ATGTATCGATACATTGAATAATGTATCGATACATCTGGGTAAAATACCCAA
1 ATGTATCGATACAATGAATAATGTATCGATACATCTGGGTAAAAAACCCAA
* * *
661642 ATGTATCGATACAATG-ATAAATGTATCGATACAT-TTGGTAAAAAATCCAG
1 ATGTATCGATACAATGAAT-AATGTATCGATACATCTGGGTAAAAAACCCAA
661692 ATGTATCGATACA
1 ATGTATCGATACA
661705 TTTATTAATG
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
50 27 0.47
51 30 0.53
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (51 bp):
ATGTATCGATACAATGAATAATGTATCGATACATCTGGGTAAAAAACCCAA
Found at i:661723 original size:50 final size:51
Alignment explanation
Indices: 661591--661724 Score: 171
Period size: 50 Copynumber: 2.6 Consensus size: 51
661581 ATTTGCCCGC
* *
661591 ATGTATCGATACATTGAATAATGTATCGATACATCTGGGTAAAATACCCAA
1 ATGTATCGATACATTGATTAATGTATCGATACATCTGGGTAAAAAACCCAA
* * * * *
661642 ATGTATCGATACAATGATAAATGTATCGATACAT-TTGGTAAAAAATCCAG
1 ATGTATCGATACATTGATTAATGTATCGATACATCTGGGTAAAAAACCCAA
* * *
661692 ATGTATCGATACATTTATTAATGAATTGATACA
1 ATGTATCGATACATTGATTAATGTATCGATACA
661725 ATTCCTTGGC
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 40 0.56
51 31 0.44
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (51 bp):
ATGTATCGATACATTGATTAATGTATCGATACATCTGGGTAAAAAACCCAA
Found at i:667465 original size:20 final size:21
Alignment explanation
Indices: 667434--667472 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
667424 AGGTCAAAAC
667434 CCTAGAAAGTATCAATACAAG
1 CCTAGAAAGTATCAATACAAG
*
667455 CCTAG-AAGTATCGATACA
1 CCTAGAAAGTATCAATACA
667473 TATTTCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (21 bp):
CCTAGAAAGTATCAATACAAG
Found at i:679579 original size:19 final size:19
Alignment explanation
Indices: 679555--679592 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
679545 CACAGGCATG
679555 ATATGACCAAACATACTTC
1 ATATGACCAAACATACTTC
679574 ATATGACCAAACATACTTC
1 ATATGACCAAACATACTTC
679593 TAAAAGGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
ATATGACCAAACATACTTC
Found at i:680977 original size:90 final size:90
Alignment explanation
Indices: 680104--680932 Score: 951
Period size: 90 Copynumber: 9.2 Consensus size: 90
680094 ATTTCCCAGT
* **
680104 CATTTCCTAGTCATATCCTTTTCCCTTAACTACCAGATGATATTGATGCATCCCAAAGCCTGATA
1 CATTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGATA
*
680169 CCTTGGGACAAAGGTGCAGCCCATA
66 CCTTGGGGCAAAGGTGCAGCCCATA
* * * * *
680194 CATTTTCCTAGTCATAACCATTTCCCTTAACCACTAGATGATATTGATGCATCCCAAAGCCTGAT
1 CA-TTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGAT
* ** *
680259 ACCTTAGAACAAAGGTGCATCCCATA
65 ACCTTGGGGCAAAGGTGCAGCCCATA
* ** * ** * ** *
680285 CATTTTTCCAGTCATATCCTTTTCTTTTAACTGCCAGATGATATTGATGCATCTTAGAGTTTAAT
1 CA-TTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGAT
* * * *
680350 ACCCTAGGGCCAAGGTGTAGCCCATA
65 ACCTTGGGGCAAAGGTGCAGCCCATA
* * *
680376 CATTTCCCAATCATATCATTTTCCCTTAACCGCCAGATGATATTGATGCATCCTAAAGCCTGATA
1 CATTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGATA
* ** *
680441 CCTTGGGACAAAGGTGTGGCCTATA
66 CCTTGGGGCAAAGGTGCAGCCCATA
*
680466 CATTTTCCCAGTCATATCCTTTTCCCTTAACCGCCAAATGATATTGATGCATCCCAAAGCCTGAT
1 CA-TTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGAT
* *
680531 ACCTTGAGGCAAAGTTGCAGCCCATA
65 ACCTTGGGGCAAAGGTGCAGCCCATA
* * * * *
680557 CATTTCCTAATCATATCCTTTTCCCTTAACCACTAGATGATATTGATGTATCCCAAAGCCTGATA
1 CATTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGATA
* *
680622 CCTTGGGACAAAGGTGCAGCCTATA
66 CCTTGGGGCAAAGGTGCAGCCCATA
* *** * ** *
680647 CATTTCCCAATCATATCCTTTT-CCTTCAACCGTTGGATGATATTAATGCATCCCAGCGCTTGAT
1 CATTTCCCAGTCATATCCTTTTCCCTT-AACCGCCAGATGATATTGATGCATCCCAAAGCCTGAT
* * *
680711 ACCTTAGGGCAAAGGTGCAACCTATA
65 ACCTTGGGGCAAAGGTGCAGCCCATA
* * * * * * * *
680737 TATTTCCCAATCATATCCATTTCCCTCAACTGCCAGATGATGTTGATGCATCCCAAAGCCTAACA
1 CATTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGATA
** *
680802 CCTTGAAGCAAAGGTGTC-GACCATA
66 CCTTGGGGCAAAGGTG-CAGCCCATA
* ** *
680827 CATTTCCAAGTCATATCCTTTTCCCTTAATTGTCAGATGATATTGATGCATCCCAAAGCCTGATA
1 CATTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGATA
*
680892 CCTTGGGGCAAAGGTGCATCCCATA
66 CCTTGGGGCAAAGGTGCAGCCCATA
*
680917 CATTTCCTAGTCATAT
1 CATTTCCCAGTCATAT
680933 TATTTTCCTT
Statistics
Matches: 621, Mismatches: 112, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
89 5 0.01
90 379 0.61
91 237 0.38
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (90 bp):
CATTTCCCAGTCATATCCTTTTCCCTTAACCGCCAGATGATATTGATGCATCCCAAAGCCTGATA
CCTTGGGGCAAAGGTGCAGCCCATA
Found at i:681138 original size:93 final size:93
Alignment explanation
Indices: 680973--681153 Score: 206
Period size: 93 Copynumber: 1.9 Consensus size: 93
680963 TGCATTACAT
* * * * *
680973 AGCCTAATTTCCTTTCGAGTAAAGGTATCCAAACCATATATCCCCAATCATGTTCTTTTTATCTA
1 AGCCTAATTTCCTTTCGAGTAAAGGTATCCAAACCACAAATCCCCAATCATGTTCTCTTCATCAA
* *
681038 ATCACTAGTTGGTATTGATGCATCATAG
66 ATCACTAGATGATATTGATGCATCATAG
*** *
681066 AGCCTAATTTCCTTT-GAGGTTGGGGTATCCAAACCACAAATTCCCAATCATG-TCTCCTTCATC
1 AGCCTAATTTCCTTTCGA-GTAAAGGTATCCAAACCACAAATCCCCAATCATGTTCT-CTTCATC
*
681129 AAA-CTACTAGATGATATTGGTGCAT
64 AAATC-ACTAGATGATATTGATGCAT
681154 TGCGTGATAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
92 6 0.08
93 67 0.92
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (93 bp):
AGCCTAATTTCCTTTCGAGTAAAGGTATCCAAACCACAAATCCCCAATCATGTTCTCTTCATCAA
ATCACTAGATGATATTGATGCATCATAG
Found at i:681745 original size:35 final size:35
Alignment explanation
Indices: 681663--681762 Score: 121
Period size: 35 Copynumber: 2.9 Consensus size: 35
681653 AGCTAGATAT
*
681663 TCAACATCTTTCCATCATTGTTTGACTATATATGG
1 TCAACATCTTTCCATCATCGTTTGACTATATATGG
* * * *
681698 TCAA-ATTTTTTCCATCATCATTGGACTATATCTGG
1 TCAACA-TCTTTCCATCATCGTTTGACTATATATGG
* *
681733 TCAACGTCTTTCCTTCATCGTTTGACTATA
1 TCAACATCTTTCCATCATCGTTTGACTATA
681763 CCTGTTTAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
34 1 0.02
35 52 0.98
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (35 bp):
TCAACATCTTTCCATCATCGTTTGACTATATATGG
Found at i:681778 original size:70 final size:70
Alignment explanation
Indices: 681663--681830 Score: 169
Period size: 70 Copynumber: 2.4 Consensus size: 70
681653 AGCTAGATAT
* * * *
681663 TCAACATCTTTCCATCATTGTTTGACTATATATGGTCAAATTTTTTCCATCATCATTGGACTATA
1 TCAACATCTTTCCTTCATCGTTTGACTATACATGGTCAAACTTTTTCCATCATCATTGGACTATA
*
681728 TCTGG
66 CCTGG
* * * * * * * * *
681733 TCAACGTCTTTCCTTCATCGTTTGACTATACCTGTTTAAACTTTTTCTATCATTATTTGATTGTA
1 TCAACATCTTTCCTTCATCGTTTGACTATACATGGTCAAACTTTTTCCATCATCATTGGACTATA
681798 CCTGG
66 CCTGG
*
681803 TCAA-A-CTTCTTCTATCATCGTTTGACTA
1 TCAACATCTT-TCCT-TCATCGTTTGACTA
681831 ATCTGGTCGA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
68 3 0.04
69 3 0.04
70 74 0.93
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (70 bp):
TCAACATCTTTCCTTCATCGTTTGACTATACATGGTCAAACTTTTTCCATCATCATTGGACTATA
CCTGG
Found at i:681792 original size:35 final size:35
Alignment explanation
Indices: 681683--681843 Score: 121
Period size: 35 Copynumber: 4.6 Consensus size: 35
681673 TCCATCATTG
** * * *
681683 TTTGACTATATATGGTCAAATTTTTTCCATCATCA
1 TTTGACTATACCTGGTCAAACTTCTTCTATCATCA
* * * *
681718 TTGGACTATATCTGGTC-AACGTCTTTCCT-TCATCG
1 TTTGACTATACCTGGTCAAACTTC-TT-CTATCATCA
* * * *
681753 TTTGACTATACCTGTTTAAACTTTTTCTATCATTA
1 TTTGACTATACCTGGTCAAACTTCTTCTATCATCA
* * *
681788 TTTGATTGTACCTGGTCAAACTTCTTCTATCATCG
1 TTTGACTATACCTGGTCAAACTTCTTCTATCATCA
* *
681823 TTTGACTA-ATCTGGTCGAACT
1 TTTGACTATACCTGGTCAAACT
681844 CTTTCTACTA
Statistics
Matches: 96, Mismatches: 26, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
34 16 0.17
35 75 0.78
36 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.44
Consensus pattern (35 bp):
TTTGACTATACCTGGTCAAACTTCTTCTATCATCA
Found at i:682038 original size:81 final size:80
Alignment explanation
Indices: 681926--682895 Score: 572
Period size: 81 Copynumber: 12.0 Consensus size: 80
681916 TTGGCCAACA
* * *
681926 TTCTGATCTATTGGCTTCATC-AGTTTTGCCCTAGCCAACTTTCCAATTAGTTTACTTTATCGGT
1 TTCTAATCTATTGGCTTTATCGA-TTTTGCCCTAGCCAACTTTCCAATT-GTTGACTTTATCGGT
* *
681990 TTCACCTTAGTCAACCT
64 TTCACCCTGGTCAACCT
* * ** *
682007 TTTTAATCTATTAGCTTTATCGATTTTGCCCTAGCCAACTTTTTAATTGGTTAACTTTATCGGTT
1 TTCTAATCTATTGGCTTTATCGATTTTGCCCTAGCCAACTTTCCAATT-GTTGACTTTATCGGTT
** ** *
682072 TTGCTTTAGTCAACCCT
65 TCACCCTGGTCAA-CCT
* * * * *
682089 TT-TAATCTATTGCCTTTATCGATTTCGCCTTAGCCAATTTTCGAATTGGTTGACTTTATCGGTT
1 TTCTAATCTATTGGCTTTATCGATTTTGCCCTAGCCAACTTTCCAATT-GTTGACTTTATCGGTT
682153 TCACCCTGGTCAACCT
65 TCACCCTGGTCAACCT
* * * * * *
682169 TTTTAATCTATTGGCTTTATC-AGTTTCGCCTTGGCCAACCTTT-CAATAGGTTGACTTTATAGG
1 TTCTAATCTATTGGCTTTATCGA-TTTTGCCCTAGCCAA-CTTTCCAAT-TGTTGACTTTATCGG
** * *
682232 TTTTGCCCTAGTCAACCC
63 TTTCACCCTGGTCAACCT
* * *
682250 TTCTAATCTATTGGCTTTATCGGTTTCT-CCCTAGCCAACTTTCCAATCTGTTGGCTTTATCAGT
1 TTCTAATCTATTGGCTTTATCGATTT-TGCCCTAGCCAACTTTCCAAT-TGTTGACTTTATCGGT
** *
682314 TTTGCCCTGGTCAACCC
64 TTCACCCTGGTCAACCT
* * * * * * *
682331 TTCCAATCTGTTGACTTTATCGATTTTACCCTGGCCAACCTTT-CAATTTCTTGGCTTTATCGGT
1 TTCTAATCTATTGGCTTTATCGATTTTGCCCTAGCCAA-CTTTCCAA-TTGTTGACTTTATCGGT
*
682395 TTCACCCTGG-CTAACTT
64 TTCACCCTGGTC-AACCT
* * * * * * *
682412 TTC-AGT-TAGTTGGCTTTATCAATTTTGCCCTGGTCAACCCTTCCAATTTGTTGGCTTTATTGG
1 TTCTAATCTA-TTGGCTTTATCGATTTTGCCCTAGCCAA-CTTTCCAA-TTGTTGACTTTATCGG
*
682475 TTTCACCCTGGCCAACC-
63 TTTCACCCTGGTCAACCT
* * * * * * * *
682492 TTCTAAT-TGGTTGGCTTTATCGGTTTTGCCTTGGCCAACTTTCTAATCTGTTGGCTATATCGAT
1 TTCTAATCT-ATTGGCTTTATCGATTTTGCCCTAGCCAACTTTCCAAT-TGTTGACTTTATCGGT
* *
682556 TTCACCTTGGCCAA-CT
64 TTCACCCTGGTCAACCT
* * * * * * * * **
682572 TTCTAATTTATTAGCTTTATC-AGTTTCGCCTTGGCCAACCTTCTAATCTGTTGGCTTTATCAAT
1 TTCTAATCTATTGGCTTTATCGA-TTTTGCCCTAGCCAACTTTCCAAT-TGTTGACTTTATCGGT
** * **
682636 TTTGCCTTGACCAACC-
64 TTCACCCTGGTCAACCT
* ** ** * * * * ** *
682652 TTCCAATCGGTTTACTTTAT-TAGTTT-CACCTTGGCCAACCTTCCAATCAATTGACTTTATCGA
1 TTCTAATCTATTGGCTTTATCGATTTTGC-CC-TAGCCAACTTTCCAAT-TGTTGACTTTATCGG
** *
682715 TTTTGCCCTGGTCAACCC
63 TTTCACCCTGGTCAACCT
* * * * * * *
682733 TTCCAATCTATTAGCTTTATTGATTTCGCCCTAGCCAACCTTCCAATAGGTTGTCTTTATCGGTT
1 TTCTAATCTATTGGCTTTATCGATTTTGCCCTAGCCAACTTTCCAAT-TGTTGACTTTATCGGTT
* *
682798 TCACCCTAGTCAACCC
65 TCACCCTGGTCAACCT
* * * * * * * * *
682814 TTCCAATCTGTTGGCTTTAT-TAGTTTTGCCTTGGCTAACCTTCCAATCTATT-AGCTTTATCAG
1 TTCTAATCTATTGGCTTTATCGA-TTTTGCCCTAGCCAACTTTCCAAT-TGTTGA-CTTTATCGG
*
682877 TTTCACCCTGGCCAACCT
63 TTTCACCCTGGTCAACCT
682895 T
1 T
682896 CCAATTGATT
Statistics
Matches: 722, Mismatches: 136, Indels: 62
0.78 0.15 0.07
Matches are distributed among these distances:
78 1 0.00
79 6 0.01
80 199 0.28
81 495 0.69
82 20 0.03
83 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (80 bp):
TTCTAATCTATTGGCTTTATCGATTTTGCCCTAGCCAACTTTCCAATTGTTGACTTTATCGGTTT
CACCCTGGTCAACCT
Found at i:682052 original size:40 final size:40
Alignment explanation
Indices: 681885--682892 Score: 396
Period size: 40 Copynumber: 25.0 Consensus size: 40
681875 ATCAAATAAT
* * * * *
681885 TTTCCAATCTATTGGCTCTATTGGTTTTGCCTTGGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * * *
681925 ATTCTGATCTATTGGCTTCATC-AGTTTTGCCCTAGCCAAC
1 TTTCTAATCTATTGGCTTTATCGA-TTTTGCCCTGGCCAAC
* ** * ** * * *
681965 TTTCCAAT-TAGTTTACTTTATCGGTTTCACCTTAGTCAACC
1 TTTCTAATCTA-TTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * *
682006 TTTTTAATCTATTAGCTTTATCGATTTTGCCCTAGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * ** * ** * *
682046 TTTTTAAT-TGGTTAACTTTATCGGTTTTGCTTTAGTCAACCC
1 TTTCTAATCT-ATTGGCTTTATCGATTTTGCCCTGGCCAA--C
* * * * *
682088 TTT-TAATCTATTGCCTTTATCGATTTCGCCTTAGCCAAT
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * * * ** *
682127 TTTCGAAT-TGGTTGACTTTATCGGTTTCACCCTGGTCAACC
1 TTTCTAATCT-ATTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * *
682168 TTTTTAATCTATTGGCTTTATC-AGTTTCGCCTTGGCCAACC
1 TTTCTAATCTATTGGCTTTATCGA-TTTTGCCCTGGCCAA-C
*** * * * * *
682209 TTTC-AATAGGTTGACTTTATAGGTTTTGCCCTAGTCAACC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * *
682249 CTTCTAATCTATTGGCTTTATCGGTTTCT-CCCTAGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTT-TGCCCTGGCCAAC
* * *
682289 TTTCCAATCTGTTGGCTTTATC-AGTTTTGCCCTGGTCAACC
1 TTTCTAATCTATTGGCTTTATCGA-TTTTGCCCTGGCCAA-C
* * * * *
682330 CTTCCAATCTGTTGACTTTATCGATTTTACCCTGGCCAACC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * * ** *
682371 TTTC-AATTTCTTGGCTTTATCGGTTTCACCCTGGCTAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * *
682410 TTT-TCAGT-TAGTTGGCTTTATCAATTTTGCCCTGGTCAACC
1 TTTCT-AATCTA-TTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * * * * * **
682451 CTTCCAATTTGTTGGCTTTATTGGTTTCACCCTGGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * * *
682491 CTTCTAAT-TGGTTGGCTTTATCGGTTTTGCCTTGGCCAAC
1 TTTCTAATCT-ATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * ** *
682531 TTTCTAATCTGTTGGCTATATCGATTTCACCTTGGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * * *
682571 TTTCTAATTTATTAGCTTTATC-AGTTTCGCCTTGGCCAAC
1 TTTCTAATCTATTGGCTTTATCGA-TTTTGCCCTGGCCAAC
* * * * *
682611 CTTCTAATCTGTTGGCTTTATCAATTTTGCCTTGACCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * ** ** * *
682651 CTTCCAATCGGTTTACTTTAT-TAGTTT-CACCTTGGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGC-CC-TGGCCAAC
* * * * *
682691 CTTCCAATCAATTGACTTTATCGATTTTGCCCTGGTCAACC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * * * * *
682732 CTTCCAATCTATTAGCTTTATTGATTTCGCCCTAGCCAAC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
* * *** * * ** * *
682772 CTTCCAATAGGTTGTCTTTATCGGTTTCACCCTAGTCAACC
1 TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAA-C
* * * * * *
682813 CTTCCAATCTGTTGGCTTTAT-TAGTTTTGCCTTGGCTAAC
1 TTTCTAATCTATTGGCTTTATCGA-TTTTGCCCTGGCCAAC
* * * **
682853 CTTCCAATCTATTAGCTTTATC-AGTTTCACCCTGGCCAAC
1 TTTCTAATCTATTGGCTTTATCGA-TTTTGCCCTGGCCAAC
682893 CTTCCAATTG
Statistics
Matches: 748, Mismatches: 181, Indels: 78
0.74 0.18 0.08
Matches are distributed among these distances:
38 1 0.00
39 20 0.03
40 467 0.62
41 248 0.33
42 12 0.02
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.41
Consensus pattern (40 bp):
TTTCTAATCTATTGGCTTTATCGATTTTGCCCTGGCCAAC
Found at i:682106 original size:41 final size:41
Alignment explanation
Indices: 681979--682352 Score: 219
Period size: 41 Copynumber: 9.2 Consensus size: 41
681969 CAATTAGTTT
* *
681979 ACTTTATCGGTTTCACCTTAGTCAACCTTTTTAATCTATT-
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
* * * * * * *
682019 AGCTTTATCGATTTTGCCCTAGCCAA-CTTTTTAAT-TGGTTA
1 A-CTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCT-ATTG
* *
682060 ACTTTATCGGTTTTGCTTTAGTCAACCCTTTTAATCTATTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
* * * *
682101 CCTTTATCGATTTCGCCTTAGCCAA---TTTTCGAAT-TGGTTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTT--AATCT-ATTG
* * * *
682141 ACTTTATCGGTTTCACCCTGGTCAACCTTTTTAATCTATTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
* * * * * ***
682182 GCTTTATCAGTTTCGCCTTGGCCAA-CCTTTCAATAGGTTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
* * * *
682222 ACTTTATAGGTTTTGCCCTAGTCAACCCTTCTAATCTATTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
* * * * * *
682263 GCTTTATCGGTTTCTCCCTAGCCAA--CTTTCCAATCTGTTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTT-TAATCTATTG
* * * * * ** *
682303 GCTTTATCAGTTTTGCCCTGGTCAACCCTTCCAATCTGTTG
1 ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
682344 ACTTTATCG
1 ACTTTATCG
682353 ATTTTACCCT
Statistics
Matches: 254, Mismatches: 64, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
38 4 0.02
39 5 0.02
40 113 0.44
41 123 0.48
42 5 0.02
43 4 0.02
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (41 bp):
ACTTTATCGGTTTCGCCTTAGTCAACCCTTTTAATCTATTG
Found at i:682308 original size:121 final size:121
Alignment explanation
Indices: 682142--682997 Score: 651
Period size: 121 Copynumber: 7.1 Consensus size: 121
682132 AATTGGTTGA
* ** * * *
682142 CTTTATCGGTTTCACCCTGGTCAACCTTTTTAATCTATTGGCTTTATCAGTTTCGCCTTGGCCAA
1 CTTTATCGGTTTCACCCTGGCCAA-CTTTCCAATCTGTTGGCTTTATCAGTTTCACCCTGGCCAA
* * * *
682207 -CCTTTCAATAGGTTGACTTTATAGGTTTTGCCCTAGTCAACCCTTCTAATCTATTGG
65 CCCTTCCAATATGTTGACTTTATAGGTTTTGCCCTGGCCAA-CCTTCTAATCTATTGG
* * ** *
682264 CTTTATCGGTTTCTCCCTAGCCAACTTTCCAATCTGTTGGCTTTATCAGTTTTGCCCTGGTCAAC
1 CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCTGTTGGCTTTATCAGTTTCACCCTGGCCAAC
* * * * * *
682329 CCTTCCAATCTGTTGACTTTATCGATTTTACCCTGGCCAACCTT-TCAATTTCTTGG
66 CCTTCCAATATGTTGACTTTATAGGTTTTGCCCTGGCCAACCTTCT-AATCTATTGG
* * * * ** *
682385 CTTTATCGGTTTCACCCTGGCTAACTTTTCAGT-TAGTTGGCTTTATCAATTTTGCCCTGGTCAA
1 CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCT-GTTGGCTTTATCAGTTTCACCCTGGCCAA
* * * ** *
682449 CCCTTCCAATTTGTTGGCTTTATTGGTTTCACCCTGGCCAACCTTCTAAT-TGGTTGG
65 CCCTTCCAATATGTTGACTTTATAGGTTTTGCCCTGGCCAACCTTCTAATCT-ATTGG
** * * * *
682506 CTTTATCGGTTTTGCCTTGGCCAACTTTCTAATCTGTTGGCTATATC-GATTTCACCTTGGCCAA
1 CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCTGTTGGCTTTATCAG-TTTCACCCTGGCCAA
* * * * * * *
682570 -CTTTCTAATTTATT-AGCTTTATCA-GTTTCGCCTTGGCCAACCTTCTAATCTGTTGG
65 CCCTTCCAATATGTTGA-CTTTAT-AGGTTTTGCCCTGGCCAACCTTCTAATCTATTGG
** ** * * * * ** * *
682626 CTTTATCAATTTTGCCTTGACCAACCTTCCAATCGGTTTACTTTATTAGTTTCACCTTGGCCAA-
1 CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCTGTTGGCTTTATCAGTTTCACCCTGGCCAAC
* * * * * *
682690 CCTTCCAATCA-ATTGACTTTATCGATTTTGCCCTGGTCAACCCTTCCAATCTATTAG
66 CCTTCCAAT-ATGTTGACTTTATAGGTTTTGCCCTGGCCAA-CCTTCTAATCTATTGG
* * * * * ** * * * *
682747 CTTTATTGATTTCGCCCTAGCCAACCTTCCAATAGGTTGTCTTTATCGGTTTCACCCTAGTCAAC
1 CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCTGTTGGCTTTATCAGTTTCACCCTGGCCAAC
* * * * * *
682812 CCTTCCAATCTGTTGGCTTTATTA-GTTTTGCCTTGGCTAACCTTCCAATCTATTAG
66 CCTTCCAATATGTTGACTTTA-TAGGTTTTGCCCTGGCCAACCTTCTAATCTATTGG
* * * * *
682868 CTTTATCAGTTTCACCCTGGCCAACCTTCCAAT-TGATT-ACTTTTATCAGTTTCACCCTAGTCA
1 CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCTG-TTGGC-TTTATCAGTTTCACCCTGGCCA
* * * * * *
682931 GCCCTTCCAATCTGTTGGCTTTATTA-GTTTTGCCTTGGCTAACCTTCTAATCTGTTGG
64 ACCCTTCCAATATGTTGACTTTA-TAGGTTTTGCCCTGGCCAACCTTCTAATCTATTGG
682989 CTTTATCGG
1 CTTTATCGG
682998 GCCAACCTTC
Statistics
Matches: 607, Mismatches: 107, Indels: 41
0.80 0.14 0.05
Matches are distributed among these distances:
120 130 0.21
121 392 0.65
122 84 0.14
123 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (121 bp):
CTTTATCGGTTTCACCCTGGCCAACTTTCCAATCTGTTGGCTTTATCAGTTTCACCCTGGCCAAC
CCTTCCAATATGTTGACTTTATAGGTTTTGCCCTGGCCAACCTTCTAATCTATTGG
Found at i:682894 original size:40 final size:40
Alignment explanation
Indices: 682137--682995 Score: 602
Period size: 40 Copynumber: 21.3 Consensus size: 40
682127 TTTCGAATTG
* * * * **
682137 GTTGACTTTATCGGTTTCACCCTGGTCAACCTTTTTAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACC-TTCCAATCT
* * * **
682178 ATTGGCTTTATCAGTTTCGCCTTGGCCAACCTTTCAATAG
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * * *
682218 GTTGACTTTAT-AGGTTTTGCCCTAGTCAACCCTTCTAATCT
1 GTTGGCTTTATCA-GTTTCGCCCTGGCCAA-CCTTCCAATCT
* * * * *
682259 ATTGGCTTTATCGGTTTCTCCCTAGCCAACTTTCCAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* *
682299 GTTGGCTTTATCAGTTTTGCCCTGGTCAACCCTTCCAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAA-CCTTCCAATCT
* ** * *
682340 GTTGACTTTATC-GATTTTACCCTGGCCAACCTTTCAATTT
1 GTTGGCTTTATCAG-TTTCGCCCTGGCCAACCTTCCAATCT
* * * * * * *
682380 CTTGGCTTTATCGGTTTCACCCTGGCTAACTTTTCAGT-T
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * *
682419 AGTTGGCTTTATCAATTTTGCCCTGGTCAACCCTTCCAATTT
1 -GTTGGCTTTATCAGTTTCGCCCTGGCCAA-CCTTCCAATCT
** * *
682461 GTTGGCTTTATTGGTTTCACCCTGGCCAACCTTCTAAT-T
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * * *
682500 GGTTGGCTTTATCGGTTTTGCCTTGGCCAACTTTCTAATCT
1 -GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * * * *
682541 GTTGGCTATATC-GATTTCACCTTGGCCAACTTTCTAATTT
1 GTTGGCTTTATCAG-TTTCGCCCTGGCCAACCTTCCAATCT
* * * *
682581 ATTAGCTTTATCAGTTTCGCCTTGGCCAACCTTCTAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * * *
682621 GTTGGCTTTATCAATTTTGCCTTGACCAACCTTCCAATCG
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
** * * * *
682661 GTTTACTTTATTAGTTTCACCTTGGCCAACCTTCCAATCA
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * *
682701 ATTGACTTTATC-GATTTTGCCCTGGTCAACCCTTCCAATCT
1 GTTGGCTTTATCAG-TTTCGCCCTGGCCAA-CCTTCCAATCT
* * * * **
682742 ATTAGCTTTAT-TGATTTCGCCCTAGCCAACCTTCCAATAG
1 GTTGGCTTTATCAG-TTTCGCCCTGGCCAACCTTCCAATCT
* * * * *
682782 GTTGTCTTTATCGGTTTCACCCTAGTCAACCCTTCCAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAA-CCTTCCAATCT
* * * *
682823 GTTGGCTTTATTAGTTTTGCCTTGGCTAACCTTCCAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * *
682863 ATTAGCTTTATCAGTTTCACCCTGGCCAACCTTCCAAT-T
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
* * * * *
682902 GATT-ACTTTTATCAGTTTCACCCTAGTCAGCCCTTCCAATCT
1 G-TTGGC-TTTATCAGTTTCGCCCTGGCCA-ACCTTCCAATCT
* * * * *
682944 GTTGGCTTTATTAGTTTTGCCTTGGCTAACCTTCTAATCT
1 GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
682984 GTTGGCTTTATC
1 GTTGGCTTTATC
682996 GGGCCAACCT
Statistics
Matches: 648, Mismatches: 147, Indels: 47
0.77 0.17 0.06
Matches are distributed among these distances:
39 7 0.01
40 428 0.66
41 209 0.32
42 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (40 bp):
GTTGGCTTTATCAGTTTCGCCCTGGCCAACCTTCCAATCT
Found at i:682994 original size:81 final size:80
Alignment explanation
Indices: 682137--682995 Score: 558
Period size: 81 Copynumber: 10.7 Consensus size: 80
682127 TTTCGAATTG
* * ** * *
682137 GTTGACTTTATCGGTTTCACCCTGG-TCAACCTTTTTAATCTATTGGCTTTATCAGTTTCGCCTT
1 GTTGGCTTTATCAGTTTCACCCTGGCT-AACC-TTCCAATCTGTTGGCTTTATCAGTTTCGCCCT
* **
682201 GGCCAACCTTTCAATAG
64 GGCCAACCTTCCAATCT
* ** * * * * *
682218 GTTGACTTTAT-AGGTTTTGCCCTAG-TCAACCCTTCTAATCTATTGGCTTTATCGGTTTCTCCC
1 GTTGGCTTTATCA-GTTTCACCCTGGCT-AA-CCTTCCAATCTGTTGGCTTTATCAGTTTCGCCC
* *
682281 TAGCCAACTTTCCAATCT
63 TGGCCAACCTTCCAATCT
** * **
682299 GTTGGCTTTATCAGTTTTGCCCTGG-TCAACCCTTCCAATCTGTTGACTTTATC-GATTTTACCC
1 GTTGGCTTTATCAGTTTCACCCTGGCT-AA-CCTTCCAATCTGTTGGCTTTATCAG-TTTCGCCC
* *
682362 TGGCCAACCTTTCAATTT
63 TGGCCAACCTTCCAATCT
* * * * * * *
682380 CTTGGCTTTATCGGTTTCACCCTGGCTAACTTTTCAGT-TAGTTGGCTTTATCAATTTTGCCCTG
1 GTTGGCTTTATCAGTTTCACCCTGGCTAACCTTCCAATCT-GTTGGCTTTATCAGTTTCGCCCTG
* *
682444 GTCAACCCTTCCAATTT
65 GCCAA-CCTTCCAATCT
** * * * * *
682461 GTTGGCTTTATTGGTTTCACCCTGGCCAACCTTCTAAT-TGGTTGGCTTTATCGGTTTTGCCTTG
1 GTTGGCTTTATCAGTTTCACCCTGGCTAACCTTCCAATCT-GTTGGCTTTATCAGTTTCGCCCTG
* *
682525 GCCAACTTTCTAATCT
65 GCCAACCTTCCAATCT
* * * * * * * * *
682541 GTTGGCTATATC-GATTTCACCTTGGCCAACTTTCTAATTTATTAGCTTTATCAGTTTCGCCTTG
1 GTTGGCTTTATCAG-TTTCACCCTGGCTAACCTTCCAATCTGTTGGCTTTATCAGTTTCGCCCTG
*
682605 GCCAACCTTCTAATCT
65 GCCAACCTTCCAATCT
* ** * * * * ** * * *
682621 GTTGGCTTTATCAATTTTGCCTTGACCAACCTTCCAATCGGTTTACTTTATTAGTTTCACCTTGG
1 GTTGGCTTTATCAGTTTCACCCTGGCTAACCTTCCAATCTGTTGGCTTTATCAGTTTCGCCCTGG
*
682686 CCAACCTTCCAATCA
66 CCAACCTTCCAATCT
* * ** * * *
682701 ATTGACTTTATC-GATTTTGCCCTGG-TCAACCCTTCCAATCTATTAGCTTTAT-TGATTTCGCC
1 GTTGGCTTTATCAG-TTTCACCCTGGCT-AA-CCTTCCAATCTGTTGGCTTTATCAG-TTTCGCC
* **
682763 CTAGCCAACCTTCCAATAG
62 CTGGCCAACCTTCCAATCT
* * * * * *
682782 GTTGTCTTTATCGGTTTCACCCTAG-TCAACCCTTCCAATCTGTTGGCTTTATTAGTTTTGCCTT
1 GTTGGCTTTATCAGTTTCACCCTGGCT-AA-CCTTCCAATCTGTTGGCTTTATCAGTTTCGCCCT
*
682846 GGCTAACCTTCCAATCT
64 GGCCAACCTTCCAATCT
* * * * *
682863 ATTAGCTTTATCAGTTTCACCCTGGCCAACCTTCCAAT-TGATT-ACTTTTATCAGTTTCACCCT
1 GTTGGCTTTATCAGTTTCACCCTGGCTAACCTTCCAATCTG-TTGGC-TTTATCAGTTTCGCCCT
* * *
682926 AGTCAGCCCTTCCAATCT
64 GGCCA-ACCTTCCAATCT
* ** * *
682944 GTTGGCTTTATTAGTTTTGCCTTGGCTAACCTTCTAATCTGTTGGCTTTATC
1 GTTGGCTTTATCAGTTTCACCCTGGCTAACCTTCCAATCTGTTGGCTTTATC
682996 GGGCCAACCT
Statistics
Matches: 625, Mismatches: 130, Indels: 46
0.78 0.16 0.06
Matches are distributed among these distances:
79 5 0.01
80 217 0.35
81 394 0.63
82 9 0.01
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (80 bp):
GTTGGCTTTATCAGTTTCACCCTGGCTAACCTTCCAATCTGTTGGCTTTATCAGTTTCGCCCTGG
CCAACCTTCCAATCT
Found at i:683235 original size:87 final size:86
Alignment explanation
Indices: 683123--683400 Score: 292
Period size: 87 Copynumber: 3.2 Consensus size: 86
683113 TCAACCTCTT
* * * * * * * *
683123 ATCCC-TTATTTACCTGTCAGCTTAGTTCCAAGTAAACCCTTGTTCATCTTTTATTGACTTATCG
1 ATCCCTTTGTTTACTTGTCGGCTTAG-TCCAGGTAAACCTTTTTTCATCTTTTGTTGACTTGTCG
* *
683187 GTTCAATTCGGTTAACTTTTTC
65 GTTCAATCCGGTTAACTCTTTC
* *
683209 ATCCCTTTGTTTACTTGTCGGTTTAGTCTCAGGTAAACCTTTTTTTCATCTTTTGTTGACCTGTC
1 ATCCCTTTGTTTACTTGTCGGCTTAGTC-CAGGTAAACC-TTTTTTCATCTTTTGTTGACTTGTC
* *
683274 GGTTCAATCCCGATCAACTCTTTC
64 GGTTCAAT-CCGGTTAACTCTTTC
* * * * *
683298 ATCTC-TTGTTTGCCTGTTGGCTTAGTCCTAGGTAAACCTTTTTTCATCTTTTGTTAACTTGTCG
1 ATCCCTTTGTTTACTTGTCGGCTTAGTCC-AGGTAAACCTTTTTTCATCTTTTGTTGACTTGTCG
* *
683362 ATTCAATCCTGGTTAACTCTTCC
65 GTTCAATCC-GGTTAACTCTTTC
683385 AT-CCTTTGTTTACTTG
1 ATCCCTTTGTTTACTTG
683401 CCAGCATAAT
Statistics
Matches: 157, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
86 10 0.06
87 77 0.49
88 55 0.35
89 15 0.10
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.46
Consensus pattern (86 bp):
ATCCCTTTGTTTACTTGTCGGCTTAGTCCAGGTAAACCTTTTTTCATCTTTTGTTGACTTGTCGG
TTCAATCCGGTTAACTCTTTC
Found at i:684267 original size:11 final size:12
Alignment explanation
Indices: 684243--684296 Score: 67
Period size: 12 Copynumber: 4.4 Consensus size: 12
684233 ATTTGATATA
684243 TAAATTTTTAAT
1 TAAATTTTTAAT
684255 TAAATTTTTATTAT
1 TAAATTTTTA--AT
684269 TAATATTTTTAAT
1 TAA-ATTTTTAAT
684282 T--ATTTTTAAT
1 TAAATTTTTAAT
684292 TAAAT
1 TAAAT
684297 AAATCAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
10 10 0.27
12 12 0.32
13 3 0.08
14 5 0.14
15 7 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TAAATTTTTAAT
Found at i:686277 original size:152 final size:153
Alignment explanation
Indices: 685909--686283 Score: 386
Period size: 150 Copynumber: 2.5 Consensus size: 153
685899 ATCCACACTT
* * * * * *
685909 TTTACATTTTTTAAGTCTTTTAGGATTATCGAGATACTTTTACGTTAAAGGTATCTCTTAGAGGC
1 TTTACCTTTTTTAAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
* * * *
685974 ATTTTAGTAATTTCCCTAAAACCGAGTCCTAGGTTATCACCAAGTCTGCTTTTATGCCGAAAGTG
66 ATTTTAGTAATTTCCCTAAAACCAAGTCCTAGGTTATCACCAAGTCTACTTCTATGCCGAAAGTA
* *
686039 TACATTTAGGATAGGTTTATACC
131 TACATTTAGGACAGGTTCATACC
* * * * *
686062 TTTTCC-TTCTTAAGTCCTTTA-GGTTA-CTAGGATACTTTTACGTCAAAGGTATCCAC-TATGG
1 TTTACCTTTTTTAAGTCTTTTAGGGTTATC-GGGATACTTTTACGTCAAAGGTATCC-CTTAGGG
** ** * **** * *
686123 GCATTTTCTTAATTT-TTTAAAATCAAGTCCTA-GTTCATCATTGGGTCTACTTCTCTGTC-AAA
64 GCATTTTAGTAATTTCCCTAAAACCAAGTCCTAGGTT-ATCACCAAGTCTACTTCTATGCCGAAA
* *
686185 GGTATATATTTAGGACAGGTTCATCCC
128 -GTATACATTTAGGACAGGTTCATACC
*
686212 TTTACCTTTTTTGAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
1 TTTACCTTTTTTAAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
686277 ATTTTAG
66 ATTTTAG
686284 ATTTTTCCCA
Statistics
Matches: 176, Mismatches: 38, Indels: 17
0.76 0.16 0.07
Matches are distributed among these distances:
149 6 0.03
150 55 0.31
151 55 0.31
152 55 0.31
153 5 0.03
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (153 bp):
TTTACCTTTTTTAAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
ATTTTAGTAATTTCCCTAAAACCAAGTCCTAGGTTATCACCAAGTCTACTTCTATGCCGAAAGTA
TACATTTAGGACAGGTTCATACC
Found at i:686321 original size:152 final size:152
Alignment explanation
Indices: 685909--686335 Score: 397
Period size: 152 Copynumber: 2.8 Consensus size: 152
685899 ATCCACACTT
* * * * * *
685909 TTTACATTTTTTAAGTCTTTTAGGATTATCGAGATACTTTTACGTTAAAGGTATCTCTTAGAGGC
1 TTTACCTTTTTTAAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
* * * ** * *
685974 ATTTTAG-TAATTTCCCTAAAACCGAGTCCTAGGTTATCACCAAGTCTGCTTTTATGCCGAAAGT
66 ATTTTAGAT-TTTTCCC-AAAATCGAGTCCTAGGTTATCATCGGGTCTACTTCTATGCCGAAAGT
* * *
686038 GTACATTTAGGATAGGTTTATACC
129 ATACATTTAGGACAGGTTCATACC
* * * * *
686062 TTTTCC-TTCTTAAGTCCTTTA-GGTTA-CTAGGATACTTTTACGTCAAAGGTATCCAC-TATGG
1 TTTACCTTTTTTAAGTCTTTTAGGGTTATC-GGGATACTTTTACGTCAAAGGTATCC-CTTAGGG
* * * * *
686123 GCATTTTCTTA-ATTTTT--TAAAATCAAGTCCTA-GTTCATCATTGGGTCTACTTCTCTGTC-A
64 GCA--TT-TTAGATTTTTCCCAAAATCGAGTCCTAGGTT-ATCATCGGGTCTACTTCTATGCCGA
* *
686183 AAGGTATATATTTAGGACAGGTTCATCCC
125 AA-GTATACATTTAGGACAGGTTCATACC
*
686212 TTTACCTTTTTTGAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
1 TTTACCTTTTTTAAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
* * ** *
686277 ATTTTAGATTTTTCCCAAAATTGAGTCTTAGGTTATCATCGGGTCCGCTTTTATGCCGA
66 ATTTTAGATTTTTCCCAAAATCGAGTCCTAGGTTATCATCGGGTCTACTTCTATGCCGA
686336 GGGTGATCAT
Statistics
Matches: 213, Mismatches: 44, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
149 9 0.04
150 62 0.29
151 45 0.21
152 79 0.37
153 14 0.07
154 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (152 bp):
TTTACCTTTTTTAAGTCTTTTAGGGTTATCGGGATACTTTTACGTCAAAGGTATCCCTTAGGGGC
ATTTTAGATTTTTCCCAAAATCGAGTCCTAGGTTATCATCGGGTCTACTTCTATGCCGAAAGTAT
ACATTTAGGACAGGTTCATACC
Found at i:690252 original size:80 final size:79
Alignment explanation
Indices: 690116--690619 Score: 381
Period size: 80 Copynumber: 6.3 Consensus size: 79
690106 CTCCTCGGAG
* * * * * *
690116 ATGGTGGGGTTGGAGTATCCCCAAAGATGAAGAATTCGGTATTATAGAAGTAAAAATGAGATTGA
1 ATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTT-TAGAAGTAAAAATGAGGTTGG
*
690181 AGTATCCCCTCAGAA
65 AGTATCCCCTCAAAA
*
690196 ATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTTCTAGAAGTTAAAAT-AGGGTTA
1 ATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTT-TAGAAGTAAAAATGA-GGTT-
* *
690260 AGAGTATCCCCTCGAAA
63 GGAGTATCCCCTCAAAA
* ** * * *
690277 ATGGTGAGGTTAAAGTATCCCTAGAGATGAAGAAATTCAATGTTTAGAA--AACATGAATGGGGT
1 ATGGTGGGGTTGGAGTATCCCCAGAGATGAA-AAATTCGATGTTTAGAAGTAA-A--AATGAGGT
*
690340 TGGAGTATCCTCTCAAAA
62 TGGAGTATCCCCTCAAAA
* * * ** * * * *
690358 ACT-ATGGGGTTAGAGTATCCCCGGAGATGAAATTTTTGGTGTTTGAAAAGTAAAAACGAGGTTG
1 A-TGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTTT-AGAAGTAAAAATGAGGTTG
* *
690422 GAGTATCCCTTCAAAG
64 GAGTATCCCCTCAAAA
* * * * * * *
690438 CTAGTGGGGTTGGAATATCCCCAAAGATAAAAAATTCGATGTTTAGAAAATAAAAATGGGGTTGG
1 ATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTTTAG-AAGTAAAAATGAGGTTGG
*
690503 AGTATCCCCTTAAAA
65 AGTATCCCCTCAAAA
* * * * * * * * * *
690518 ATGATAGAGTTGGAGTAT-CCCTGAAGATAAAAAATT-TAGTGTTTTAGAAATAGAAACGGGGTT
1 ATGGTGGGGTTGGAGTATCCCCAG-AGATGAAAAATTCGA-TG-TTTAGAAGTAAAAATGAGGTT
* * * * *
690581 GGACTATCCCTTTAGAG
63 GGAGTATCCCCTCAAAA
690598 ATGGTGGGGTTGGAGTATCCCC
1 ATGGTGGGGTTGGAGTATCCCC
690620 TTTTTGACAT
Statistics
Matches: 334, Mismatches: 73, Indels: 33
0.76 0.17 0.08
Matches are distributed among these distances:
79 8 0.02
80 210 0.63
81 94 0.28
82 20 0.06
83 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.27
Consensus pattern (79 bp):
ATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTTTAGAAGTAAAAATGAGGTTGGA
GTATCCCCTCAAAA
Found at i:690303 original size:81 final size:79
Alignment explanation
Indices: 690129--690325 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 79
690119 GTGGGGTTGG
* * * * *
690129 AGTATCCCCAAAGATGAAGAATTCGGTATTATAGAAGTAAAAATGAGATTGAAGTATCCCCTCAG
1 AGTATCCCCAGAGATGAAAAATTCGATGTT-TAGAAGTAAAAATGAGATTAAAGTATCCCCTCAG
* **
690194 AAATGGTGGGGTTGG
65 AAATGGTGAGGTTAA
* *
690209 AGTATCCCCAGAGATGAAAAATTCGATGTTCTAGAAGTTAAAAT-AGGGTTAAGAGTATCCCCTC
1 AGTATCCCCAGAGATGAAAAATTCGATGTT-TAGAAGTAAAAATGA-GATTAA-AGTATCCCCTC
690273 -GAAAATGGTGAGGTTAA
63 AG-AAATGGTGAGGTTAA
* *
690290 AGTATCCCTAGAGATGAAGAAATTCAATGTTTAGAA
1 AGTATCCCCAGAGATGAA-AAATTCGATGTTTAGAA
690326 AACATGAATG
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 43 0.43
81 45 0.45
82 11 0.11
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.26
Consensus pattern (79 bp):
AGTATCCCCAGAGATGAAAAATTCGATGTTTAGAAGTAAAAATGAGATTAAAGTATCCCCTCAGA
AATGGTGAGGTTAA
Found at i:690346 original size:81 final size:80
Alignment explanation
Indices: 690181--690389 Score: 199
Period size: 81 Copynumber: 2.6 Consensus size: 80
690171 ATGAGATTGA
* ** * *
690181 AGTATCCCCTCAGAAATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTTCTAGAAG
1 AGTATCCCCTCA-AAATGGTGAGGTTAAAGTATCCCCAGAGATGAAAAATTCAATGTTCTAGAAA
**
690246 TTAAAATAGGGTTAAG
65 ACAAAATAGGGTTAAG
*
690262 AGTATCCCCTCGAAAATGGTGAGGTTAAAGTATCCCTAGAGATGAAGAAATTCAATGTT-TAGAA
1 AGTATCCCCTC-AAAATGGTGAGGTTAAAGTATCCCCAGAGATGAA-AAATTCAATGTTCTAGAA
* * *
690326 AACATGAATGGGGTT-GG
64 AACA-AAATAGGGTTAAG
* * * * *
690343 AGTATCCTCTCAAAAACT-ATGGGGTTAGAGTATCCCCGGAGATGAAA
1 AGTATCCCCTC-AAAA-TGGTGAGGTTAAAGTATCCCCAGAGATGAAA
690390 TTTTTGGTGT
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
80 1 0.01
81 84 0.79
82 21 0.20
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.25
Consensus pattern (80 bp):
AGTATCCCCTCAAAATGGTGAGGTTAAAGTATCCCCAGAGATGAAAAATTCAATGTTCTAGAAAA
CAAAATAGGGTTAAG
Found at i:690516 original size:25 final size:26
Alignment explanation
Indices: 690488--690538 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
690478 GTTTAGAAAA
*
690488 TAAAAATG-GGGTTGGAGTATCCCCT
1 TAAAAATGAGAGTTGGAGTATCCCCT
690513 TAAAAATGATAGAGTTGGAGTATCCC
1 TAAAAATG--AGAGTTGGAGTATCCC
690539 TGAAGATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
28 14 0.64
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (26 bp):
TAAAAATGAGAGTTGGAGTATCCCCT
Found at i:690536 original size:160 final size:158
Alignment explanation
Indices: 690114--690619 Score: 448
Period size: 160 Copynumber: 3.2 Consensus size: 158
690104 TACTCCTCGG
* * * * * * * *
690114 AGATGGTGGGGTTGGAGTATCCCCAAAGATGAAGAATTCGGTATTATAG-AAGTAAAAATGAGAT
1 AGATGGTGGGGTTGGAATATCCCCAAAGATAAAAAATTCGATGTT-TAGAAAATAAAAATGGGGT
* * * * * * *
690178 TGAAGTATCCCCTCAGAAATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTCGATGTTCTAG
65 TGGAGTATCCCCTCAAAAATGATGGGGTTGGAGTATCCCCGGAGATGAAAAATTTGGTGTT-TAA
* *
690243 AAGTTAAAATA-GGGTTAAGAGTATCCCCTCGAA
129 AAG-TAAAA-ACGGGTT-GGAGTATCCCTTC-AA
* * * * * * * **
690276 A-ATGGTGAGGTT-AAAGTATCCCTAGAGATGAAGAAATTCAATGTTTAGAAAACATGAATGGGG
1 AGATGGTGGGGTTGGAA-TATCCCCAAAGAT-AAAAAATTCGATGTTTAGAAAATAAAAATGGGG
* * **
690339 TTGGAGTATCCTCTCAAAAACT-ATGGGGTTAGAGTATCCCCGGAGATGAAATTTTTGGTGTTTG
64 TTGGAGTATCCCCTCAAAAA-TGATGGGGTTGGAGTATCCCCGGAGATGAAAAATTTGGTGTTT-
690403 AAAAGTAAAAACGAGGTTGGAGTATCCCTTCAA
127 AAAAGTAAAAACG-GGTTGGAGTATCCCTTCAA
* *
690436 AGCTAGTGGGGTTGGAATATCCCCAAAGATAAAAAATTCGATGTTTAGAAAATAAAAATGGGGTT
1 AGATGGTGGGGTTGGAATATCCCCAAAGATAAAAAATTCGATGTTTAGAAAATAAAAATGGGGTT
* * * * * * *
690501 GGAGTATCCCCTTAAAAATGATAGAGTTGGAGTATCCCTGAAGATAAAAAATTTAGTGTTTTAGA
66 GGAGTATCCCCTCAAAAATGATGGGGTTGGAGTATCCCCGGAGATGAAAAATTTGGTG-TTTA-A
* * * *
690566 AA-TAGAAACGGGGTTGGACTATCCCTTTAG
129 AAGTAAAAAC-GGGTTGGAGTATCCCTTCAA
*
690596 AGATGGTGGGGTTGGAGTATCCCC
1 AGATGGTGGGGTTGGAATATCCCC
690620 TTTTTGACAT
Statistics
Matches: 272, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
159 1 0.00
160 124 0.46
161 68 0.25
162 78 0.29
163 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.27
Consensus pattern (158 bp):
AGATGGTGGGGTTGGAATATCCCCAAAGATAAAAAATTCGATGTTTAGAAAATAAAAATGGGGTT
GGAGTATCCCCTCAAAAATGATGGGGTTGGAGTATCCCCGGAGATGAAAAATTTGGTGTTTAAAA
GTAAAAACGGGTTGGAGTATCCCTTCAA
Found at i:690909 original size:83 final size:82
Alignment explanation
Indices: 690755--690919 Score: 208
Period size: 83 Copynumber: 2.0 Consensus size: 82
690745 CCAACCGAAT
* * * *
690755 ACTCTTTGAGATATTCGAAATCTTAAATTGAGCATTTTGAAAGATTGGGTTTGAGACATGGGATA
1 ACTCTTCGAGACATTCGAAATCTCAAATTGAGCATTTTGAAAGATTGGGTTTGAGACATGGGACA
** *
690820 GTATCGCATCGCTTTTC
66 ACATCGCATCGCCTTTC
* *
690837 ACTCTTCGAGACATTCGAACGTCTCAAATTGAGCATTTTGAAAGCTTGGGTTTGA-A-ATAGAGG
1 ACTCTTCGAGACATTCGAA-ATCTCAAATTGAGCATTTTGAAAGATTGGGTTTGAGACAT-G-GG
690900 ACAACATCGCATCGCCTTTC
63 ACAACATCGCATCGCCTTTC
690920 TTTTTGAATT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
81 2 0.03
82 19 0.27
83 50 0.70
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (82 bp):
ACTCTTCGAGACATTCGAAATCTCAAATTGAGCATTTTGAAAGATTGGGTTTGAGACATGGGACA
ACATCGCATCGCCTTTC
Found at i:691712 original size:26 final size:26
Alignment explanation
Indices: 691676--691726 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
691666 TTGAGTAAAG
691676 AATGTTTCTTTAGTTAAAAATAGCAA
1 AATGTTTCTTTAGTTAAAAATAGCAA
691702 AATGTTTCTTTAGTTAAAAATAGCA
1 AATGTTTCTTTAGTTAAAAATAGCA
691727 TTTTGAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (26 bp):
AATGTTTCTTTAGTTAAAAATAGCAA
Found at i:693082 original size:14 final size:14
Alignment explanation
Indices: 693059--693088 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
693049 CAATGAATAA
693059 TGTATCGATACATT
1 TGTATCGATACATT
*
693073 TGTATTGATACATT
1 TGTATCGATACATT
693087 TG
1 TG
693089 GGTCAAACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (14 bp):
TGTATCGATACATT
Found at i:693113 original size:64 final size:65
Alignment explanation
Indices: 693015--693137 Score: 185
Period size: 64 Copynumber: 1.9 Consensus size: 65
693005 GAATGTATCA
* * *
693015 ATACATTTGGTTCCAAAAATAGAATGTATCGATACAATGAATAATGTATCGATACATTTGTATTG
1 ATACATTTGGGTCCAAAAATAGAATGTATCGATACAATGAAAAATGCATCGATACATTTGTATTG
** *
693080 ATACATTTGGGT-CAAACCTAGAATTTATCGATACAATGAAAAATGCATCGATACATTT
1 ATACATTTGGGTCCAAAAATAGAATGTATCGATACAATGAAAAATGCATCGATACATTT
693138 TCTTTCCAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
64 41 0.79
65 11 0.21
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (65 bp):
ATACATTTGGGTCCAAAAATAGAATGTATCGATACAATGAAAAATGCATCGATACATTTGTATTG
Found at i:693218 original size:20 final size:20
Alignment explanation
Indices: 693174--693247 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
693164 GACATAGTCC
* **
693174 TGTATCGATACATTTTAGATA
1 TGTATCGATACA-TTCACTTA
*
693195 TGTATCAATACATTCACTTA
1 TGTATCGATACATTCACTTA
693215 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
693235 TTGTATCGATACA
1 -TGTATCGATACA
693248 AATTATAGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 24 0.51
21 23 0.49
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:695436 original size:71 final size:71
Alignment explanation
Indices: 695282--695437 Score: 240
Period size: 71 Copynumber: 2.2 Consensus size: 71
695272 TAGAAGAATG
* * *
695282 GGGTTGGAGTATCCCTGATGATGATAATTTAAGCAAAATTAAGGTTTAAATCTTGATAATTTTAA
1 GGGTTGGAGTATCCATGATGATGATAATTTAAGCAAAATTAAGGTTTAAATATTGACAATTTTAA
695347 AAAACA
66 AAAACA
* * *
695353 GGATTAGAGTATCCATGATGATGATGATTTAAGCAAAATTAAGGTTTAAATATTGACAATTTTAA
1 GGGTTGGAGTATCCATGATGATGATAATTTAAGCAAAATTAAGGTTTAAATATTGACAATTTTAA
*
695418 AAAACC
66 AAAACA
*
695424 GGGTTGGTGTATCC
1 GGGTTGGAGTATCC
695438 TCTCGAAAGA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 75 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (71 bp):
GGGTTGGAGTATCCATGATGATGATAATTTAAGCAAAATTAAGGTTTAAATATTGACAATTTTAA
AAAACA
Found at i:695550 original size:95 final size:96
Alignment explanation
Indices: 695385--695560 Score: 284
Period size: 95 Copynumber: 1.8 Consensus size: 96
695375 GATGATTTAA
* * *
695385 GCAAAATTAAGGTTTAAATATTGACAATTTTAAAAAACCGGGTTGGTGTATCCTCTCGAAAGAAT
1 GCAAAATTAAGATTTAAATATTGACAATTTTAAAAAAACGGGTTGGTGTATCCCCTCGAAAGAAT
*
695450 GGGGTTGGAGTATCCCAATGACGATAATTAG
66 AGGGTTGGAGTATCCCAATGACGATAATTAG
*
695481 GCAAAA-TAAGATTTAAATATTGACAATTTTAAAAAAAGGGGTTGGTGTATCCCCTC-AGAAGAA
1 GCAAAATTAAGATTTAAATATTGACAATTTTAAAAAAACGGGTTGGTGTATCCCCTCGA-AAGAA
695544 TAGGGTTGGAGTATCCC
65 TAGGGTTGGAGTATCCC
695561 GTTGAAGGAA
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
94 1 0.01
95 67 0.91
96 6 0.08
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (96 bp):
GCAAAATTAAGATTTAAATATTGACAATTTTAAAAAAACGGGTTGGTGTATCCCCTCGAAAGAAT
AGGGTTGGAGTATCCCAATGACGATAATTAG
Found at i:706474 original size:46 final size:46
Alignment explanation
Indices: 706421--706514 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
706411 TTGAGTGTGG
* * * *
706421 TTGTTGCCTTGAGTAACTCTCTAAGTTAGGCAAATATTAGTCCTAA
1 TTGTTGCCTTGAGTAACTCCCCAAGTCAAGCAAATATTAGTCCTAA
706467 TTGTTGCCTTGAGTAACTCCCCAAGTCAAGCAAATATTAGTCCTAA
1 TTGTTGCCTTGAGTAACTCCCCAAGTCAAGCAAATATTAGTCCTAA
706513 TT
1 TT
706515 AATGGGGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (46 bp):
TTGTTGCCTTGAGTAACTCCCCAAGTCAAGCAAATATTAGTCCTAA
Found at i:709472 original size:49 final size:51
Alignment explanation
Indices: 709376--709472 Score: 126
Period size: 49 Copynumber: 1.9 Consensus size: 51
709366 ATAAAATAAT
*
709376 TGAATGTATCAATACTATCCTTAAATGTATTGATACATTCAAGCATTTGGC
1 TGAATGTATCAATACTATCCTCAAATGTATTGATACATTCAAGCATTTGGC
* * * * *
709427 TGAATGTATCGATACTA-CC-CAATTGTTTTGATACATTTAGGCATTT
1 TGAATGTATCAATACTATCCTCAAATGTATTGATACATTCAAGCATTT
709473 TGCTTGATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
49 22 0.55
50 2 0.05
51 16 0.40
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (51 bp):
TGAATGTATCAATACTATCCTCAAATGTATTGATACATTCAAGCATTTGGC
Found at i:715580 original size:19 final size:19
Alignment explanation
Indices: 715556--715609 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
715546 ATTTTTACAA
715556 CTTGTATCGATACATAAGT
1 CTTGTATCGATACATAAGT
* *
715575 CTTGTATCGATACATTATT
1 CTTGTATCGATACATAAGT
*
715594 CAATGTATCGATACAT
1 C-TTGTATCGATACAT
715610 GAAAGCAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (19 bp):
CTTGTATCGATACATAAGT
Found at i:720056 original size:18 final size:19
Alignment explanation
Indices: 720027--720066 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
720017 TGAAAAAAAT
*
720027 AATAAGAAAAATTAATAAA
1 AATAAGAAAAATCAATAAA
720046 AATAA-AAAAATCAATAAA
1 AATAAGAAAAATCAATAAA
720064 AAT
1 AAT
720067 CATGAAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (19 bp):
AATAAGAAAAATCAATAAA
Found at i:720821 original size:35 final size:35
Alignment explanation
Indices: 720782--720861 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
720772 CTAGCATCCA
* * ** *
720782 TTCCAGTAGCCTCCCATTCATGATCAAGGGATAGC
1 TTCCAGCAGCCTCCCATCCACAATCAAAGGATAGC
720817 TTCCAGCAGCCTCCCATCCACAATCAAAGGATAGC
1 TTCCAGCAGCCTCCCATCCACAATCAAAGGATAGC
720852 TTCCAGCAGC
1 TTCCAGCAGC
720862 TTCTAGCCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (35 bp):
TTCCAGCAGCCTCCCATCCACAATCAAAGGATAGC
Found at i:720944 original size:76 final size:76
Alignment explanation
Indices: 720858--721046 Score: 207
Period size: 76 Copynumber: 2.5 Consensus size: 76
720848 TAGCTTCCAG
* * * * * * *
720858 CAGCTTCTAGCCCACGGACAGTTTCTAATAGTATCCACTTCAGCAAGCAATAGCTTCCAGCATCC
1 CAGCTCCTAGCCCACGGACAGTTTCCAACAGCATCCACTCCAACAAGCAACAGCTTCCAGCATCC
720923 ACTCCAGCAAA
66 ACTCCAGCAAA
* * * *
720934 CAGCTCCTAGCCCACGAATAGTTTCCAGCAGCATCCACTCCAACAAGCAGCAGCTTCCAGCATCC
1 CAGCTCCTAGCCCACGGACAGTTTCCAACAGCATCCACTCCAACAAGCAACAGCTTCCAGCATCC
*
720999 ACTCCAGCAAG
66 ACTCCAGCAAA
* * * * * * *
721010 TAGCTCCCAACCCACGGGCAGCTTCCAGCAGCTTCCA
1 CAGCTCCTAGCCCACGGACAGTTTCCAACAGCATCCA
721047 GCAGTAGCAG
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
76 93 1.00
ACGTcount: A:0.28, C:0.38, G:0.16, T:0.19
Consensus pattern (76 bp):
CAGCTCCTAGCCCACGGACAGTTTCCAACAGCATCCACTCCAACAAGCAACAGCTTCCAGCATCC
ACTCCAGCAAA
Found at i:721253 original size:29 final size:29
Alignment explanation
Indices: 721221--721330 Score: 152
Period size: 29 Copynumber: 3.8 Consensus size: 29
721211 CAACGTCCAG
*
721221 CAGCATCCACTCTAGCAAACAACAGCTTC
1 CAGCATCCACTCTAGCAAGCAACAGCTTC
* * *
721250 CAGCATCCACTCCT-GCAAGTAGCAGTTTC
1 CAGCATCCACT-CTAGCAAGCAACAGCTTC
*
721279 CAGCATCCACTCTAGTAAGCAACAGCTTC
1 CAGCATCCACTCTAGCAAGCAACAGCTTC
721308 CAGCATCCACTC-AGCAAGCAACA
1 CAGCATCCACTCTAGCAAGCAACA
721331 ACCTCTAGCA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
28 12 0.17
29 56 0.80
30 2 0.03
ACGTcount: A:0.32, C:0.36, G:0.14, T:0.18
Consensus pattern (29 bp):
CAGCATCCACTCTAGCAAGCAACAGCTTC
Found at i:726523 original size:15 final size:15
Alignment explanation
Indices: 726505--726547 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
726495 GATGAAGAAG
726505 AAAAAGAAAAAAAAC
1 AAAAAGAAAAAAAAC
* *
726520 AAAAACAAAAAAAAT
1 AAAAAGAAAAAAAAC
*
726535 AAAATGAAAAAAA
1 AAAAAGAAAAAAA
726548 GTGCAATAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.86, C:0.05, G:0.05, T:0.05
Consensus pattern (15 bp):
AAAAAGAAAAAAAAC
Found at i:727883 original size:33 final size:32
Alignment explanation
Indices: 727831--728307 Score: 296
Period size: 33 Copynumber: 14.8 Consensus size: 32
727821 ACCCTTCCCA
* *
727831 AAGTTCACGACTCAGTGGCATCCTTTTTCCTCC
1 AAGTCCACGACTTAGTGGCAT-CTTTTTCCTCC
* * *
727864 AAGTCCATGACTTAATGGCAT-TTTTTTCTCCC
1 AAGTCCACGACTTAGTGGCATCTTTTTCCT-CC
** * * * *
727896 AAAGTCCACGACGCAATGACATCTCTTT-C-CA
1 -AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
* * *
727927 AAGTCCACCACTCAGTGGCATCCTTTTTCTTCC
1 AAGTCCACGACTTAGTGGCAT-CTTTTTCCTCC
*
727960 AAGTCCACGACTTAGT-GCATCTTTTTTCTCC
1 AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
* *
727991 TAAAGTCCACGACTTAGTGGCATC-TCTTCC-CA
1 --AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
* *
728023 AAGTCCATGACTTAGTGGCATCCTTTTTCTTCC
1 AAGTCCACGACTTAGTGGCAT-CTTTTTCCTCC
* * *
728056 AAGCCCACAACTTAGTGGCATCTTTTTTCTCCC
1 AAGTCCACGACTTAGTGGCATCTTTTTCCT-CC
* * * *
728089 AAAGTCCATGACTCAGTGGCATC-TCTTCC-CA
1 -AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
* * *
728120 AAGTACACGACTCAGTGGCATCCTTTTTCTTCC
1 AAGTCCACGACTTAGTGGCAT-CTTTTTCCTCC
* * *
728153 AAGACCATGACTTAGTGGCATCTTTTTTCTCC
1 AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
* * * *
728185 TAAAGCCCATGACTTAGTGGCATCTCTTT--TCA
1 --AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
* **
728217 AAGTCCACAACTCT-GTGGCA-CTTTTTCCTTTT
1 AAGTCCACGACT-TAGTGGCATCTTTTTCC-TCC
* ** * **
728249 AAGTCCACAACTCCGTGGTACTCTTTTTCCTTT
1 AAGTCCACGACTTAGTGGCA-TCTTTTTCCTCC
* *
728282 AAGTCCACAACTCT-GTGGCACCTTTT
1 AAGTCCACGACT-TAGTGGCATCTTTT
728308 CCTTTTAAGT
Statistics
Matches: 351, Mismatches: 66, Indels: 55
0.74 0.14 0.12
Matches are distributed among these distances:
29 5 0.01
30 71 0.20
31 26 0.07
32 56 0.16
33 133 0.38
34 60 0.17
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.34
Consensus pattern (32 bp):
AAGTCCACGACTTAGTGGCATCTTTTTCCTCC
Found at i:728137 original size:97 final size:97
Alignment explanation
Indices: 727802--728243 Score: 581
Period size: 97 Copynumber: 4.6 Consensus size: 97
727792 CTTTTTTCAA
* * * *
727802 AAAG-CCATGACTTTGTGGCA-CCCTTCCCAAAGTTCACGACTCAGTGGCATCCTTTTTCCTCCA
1 AAAGTCCATGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCA
* *
727865 AGTCCATGACTTAATGGCAT-TTTTTTCTCCC
66 AGTCCACGACTTAGTGGCATCTTTTTTCTCCC
* ** * * * *
727896 AAAGTCCACGACGCAATGACATCTCTTTCCAAAGTCCACCACTCAGTGGCATCCTTTTTCTTCCA
1 AAAGTCCATGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCA
*
727961 AGTCCACGACTTAGT-GCATCTTTTTTCTCCT
66 AGTCCACGACTTAGTGGCATCTTTTTTCTCCC
* * *
727992 AAAGTCCACGACTTAGTGGCATCTCTTCCCAAAGTCCATGACTTAGTGGCATCCTTTTTCTTCCA
1 AAAGTCCATGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCA
* *
728057 AGCCCACAACTTAGTGGCATCTTTTTTCTCCC
66 AGTCCACGACTTAGTGGCATCTTTTTTCTCCC
* *
728089 AAAGTCCATGACTCAGTGGCATCTCTTCCCAAAGTACACGACTCAGTGGCATCCTTTTTCTTCCA
1 AAAGTCCATGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCA
* * *
728154 AGACCATGACTTAGTGGCATCTTTTTTCTCCT
66 AGTCCACGACTTAGTGGCATCTTTTTTCTCCC
* ** * *
728186 AAAGCCCATGACTTAGTGGCATCTCTTTTCAAAGTCCACAACTCTGTGGCA--CTTTTTC
1 AAAGTCCATGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTTTC
728244 CTTTTAAGTC
Statistics
Matches: 303, Mismatches: 41, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
94 4 0.01
95 21 0.07
96 131 0.43
97 147 0.49
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.33
Consensus pattern (97 bp):
AAAGTCCATGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCA
AGTCCACGACTTAGTGGCATCTTTTTTCTCCC
Found at i:728173 original size:63 final size:65
Alignment explanation
Indices: 727828--728214 Score: 285
Period size: 63 Copynumber: 5.9 Consensus size: 65
727818 GGCACCCTTC
* * * * * * * *
727828 CCAAAGTTCACGACTCAGTGGCATCCTTTTTCCTCC-AAGTCCATGACTTAATGGCAT-TTTTTT
1 CCAAAGTCCATGACTTAGTGGCAT-C-TCTT-CTCCAAAGTCCACGACTCAGTGGCATCCTTTTT
*
727891 CTC
63 CTT
* ** * * *
727894 CCAAAGTCCACGACGCAATGACATCTCTT-TCCAAAGTCCACCACTCAGTGGCATCCTTTTTCTT
1 CCAAAGTCCATGACTTAGTGGCATCTCTTCTCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTT
* * * *
727958 CC-AAGTCCACGACTTAGT-GCATCTTTTTTCTCCTAAAGTCCACGACTTAGTGGCAT-C-TCTT
1 CCAAAGTCCATGACTTAGTGGCATC--TCTTCTCC-AAAGTCCACGACTCAGTGGCATCCTTTTT
728019 C--
63 CTT
* * * * *
728020 CCAAAGTCCATGACTTAGTGGCATCCTTTTTCTTCC-AAGCCCACAACTTAGTGGCATCTTTTTT
1 CCAAAGTCCATGACTTAGTGGCAT-C-TCTTC-TCCAAAGTCCACGACTCAGTGGCATCCTTTTT
*
728084 CTC
63 CTT
* *
728087 CCAAAGTCCATGACTCAGTGGCATCTCTTC-CCAAAGTACACGACTCAGTGGCATCCTTTTTCTT
1 CCAAAGTCCATGACTTAGTGGCATCTCTTCTCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTT
* * * * *
728151 CC-AAGACCATGACTTAGTGGCATCTTTTTTCTCCTAAAGCCCATGACTTAGTGGCATCTCTTTT
1 CCAAAGTCCATGACTTAGTGGCATC--TCTTCTCC-AAAGTCCACGACTCAGTGGCATC-CTTTT
728215 CAAAGTCCAC
Statistics
Matches: 262, Mismatches: 39, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
62 9 0.03
63 86 0.33
64 56 0.21
65 21 0.08
66 43 0.16
67 42 0.16
68 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.33
Consensus pattern (65 bp):
CCAAAGTCCATGACTTAGTGGCATCTCTTCTCCAAAGTCCACGACTCAGTGGCATCCTTTTTCTT
Found at i:728254 original size:32 final size:33
Alignment explanation
Indices: 728217--728434 Score: 327
Period size: 32 Copynumber: 6.6 Consensus size: 33
728207 TCTCTTTTCA
*
728217 AAGTCCACAACTCTGTGGCAC-TTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTTCCTTTT
*
728249 AAGTCCACAACTCCGTGGTACTCTTTTTCC-TTT
1 AAGTCCACAACTCCGTGGCACT-TTTTTCCTTTT
* *
728282 AAGTCCACAACTCTGTGGCAC-CTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTTCCTTTT
*
728314 AAGTCCACAACTCCGTGGTACCTTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTTCCTTTT
*
728348 AAGTCCACAACTCCGTGGCACATTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTTCCTTTT
728380 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTTCCTTTT
728414 AAGTCCACAACTCCGTGGCAC
1 AAGTCCACAACTCCGTGGCAC
728435 CCTTTTGAGC
Statistics
Matches: 168, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
31 6 0.04
32 65 0.39
33 36 0.21
34 61 0.36
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.37
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACTTTTTTCCTTTT
Found at i:728366 original size:66 final size:66
Alignment explanation
Indices: 728217--728440 Score: 362
Period size: 66 Copynumber: 3.4 Consensus size: 66
728207 TCTCTTTTCA
* *
728217 AAGTCCACAACTCTGTGGCACTTTTTCCTTTTAAGTCCACAACTCCGTGGTA-CTCTTTTTCC-T
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCT-TTTTTCCTT
728280 TT
65 TT
*
728282 AAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCTTTTTTCCTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCTTTTTTCCTTT
728347 T
66 T
* * *
728348 AAGTCCACAACTCCGTGGCACATTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTTCCTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCTTTTTTCCTTT
728413 T
66 T
728414 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTT
728441 GAGCCCACAT
Statistics
Matches: 150, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
65 58 0.39
66 87 0.58
67 5 0.03
ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38
Consensus pattern (66 bp):
AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCTTTTTTCCTTT
T
Found at i:728435 original size:34 final size:34
Alignment explanation
Indices: 728217--728440 Score: 329
Period size: 34 Copynumber: 6.8 Consensus size: 34
728207 TCTCTTTTCA
*
728217 AAGTCCACAACTCTGTGGCA-C-TTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
*
728249 AAGTCCACAACTCCGTGGTA-CTCTTTTTCC-TTT
1 AAGTCCACAACTCCGTGGCACCT-TTTTTCCTTTT
*
728282 AAGTCCACAACTCTGTGGCACC--TTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
*
728314 AAGTCCACAACTCCGTGGTACCTTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
*
728348 AAGTCCACAACTCCGTGGCA-CATTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
728380 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
*
728414 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT
728441 GAGCCCACAT
Statistics
Matches: 174, Mismatches: 10, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
31 6 0.03
32 67 0.39
33 33 0.19
34 68 0.39
ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38
Consensus pattern (34 bp):
AAGTCCACAACTCCGTGGCACCTTTTTTCCTTTT
Found at i:728480 original size:33 final size:32
Alignment explanation
Indices: 728442--728503 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
728432 CACCCTTTTG
*
728442 AGCCCACATAAGTTAGTGGCAACCTCTTTCAAA
1 AGCCCACACAAGTTAGTGGC-ACCTCTTTCAAA
* *
728475 AGCCCACACAAGTTGGTGGCATCTCTTTC
1 AGCCCACACAAGTTAGTGGCACCTCTTTC
728504 TAAGCCGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 8 0.31
33 18 0.69
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (32 bp):
AGCCCACACAAGTTAGTGGCACCTCTTTCAAA
Found at i:728671 original size:52 final size:51
Alignment explanation
Indices: 728545--729046 Score: 403
Period size: 52 Copynumber: 9.8 Consensus size: 51
728535 CACTGACACC
** * * * *
728545 TTTAAGTCCAATATTACTAGCCTTGAATCAGCATATTAGTACCTTTAT-ATT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCA-T
* * * *
728596 TTTAAGTCCAATGTTC-ATTGCCTTGAATCAGCACATTGGCACCTTTTTCAT
1 TTTAAGTCCAAT-ATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * * *
728647 TTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTTATCAAC
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTC-AT
* * * *
728700 TTTAAGTCCAATGTTGCTGGCCTTGAATCAGCAAATTAGCACCTTTTTC-T
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * * *
728750 TTCTCAAGTCTAATATCGTTGGCTTTGAATCAGCATATTGGCACCTTTATCAT
1 TT-T-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * * *
728803 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAACATATTGGCACCTTTTTCTT
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * * * * * * * *
728855 TCTTAAGTCCATTGTCGCTAGCCTTGTATTAGTACATTGGCA---TCTCCAT
1 T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * *
728904 CTTTAAGTCCAATGTCGCTGGCCTTTAATCAGCACATTGGCACC---TTCAT
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * * * **
728953 GTTTAAGTCCGATATTGCTAGCCTTGAATCAGCATATTGGCATCTTTAACAT
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
* * *
729005 TCCTAAG-CCTAATGTCGTTGGCCTTGAATCAGCATATTGGCA
1 T-TTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCA
729047 TTCTTCTCAT
Statistics
Matches: 362, Mismatches: 71, Indels: 35
0.77 0.15 0.07
Matches are distributed among these distances:
49 78 0.22
50 3 0.01
51 49 0.14
52 224 0.62
53 6 0.02
54 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (51 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCAT
Found at i:728747 original size:104 final size:104
Alignment explanation
Indices: 728548--729046 Score: 525
Period size: 104 Copynumber: 4.9 Consensus size: 104
728538 TGACACCTTT
** * * *
728548 AAGTCCAATATTACTAGCCTTGAATCAGCATATTAGTACCTTTAT-ATTTTTAAGTCCAATGTT-
1 AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTG
*
728611 CATTGCCTTGAATCAGCACATTGGCACCTTTTTCATTT-TC
66 C-TGGCCTTGAATCAGCACATTGGCACCTTTTTC-TTTCTC
* * * *
728651 AAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTTATCAACTTTAAGTCCAATGTTG
1 AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTG
* *
728716 CTGGCCTTGAATCAGCAAATTAGCACCTTTTTCTTTCTC
66 CTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTC
* * * *
728755 AAGTCTAATATCGTTGGCTTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTG
1 AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTG
* * *
728820 CTGGCCTTGAATCAACATATTGGCACCTTTTTCTTTCTT
66 CTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTC
* * * * * * * * *
728859 AAGTCCATTGTCGCTAGCCTTGTATTAGTACATTGGCA--TCT-CCATCTTTAAGTCCAATGTCG
1 AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTG
* ** *
728921 CTGGCCTTTAATCAGCACATTGGCACCTTCAT-GTT-T-
66 CTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTC
* * * * *
728957 AAGTCCGATATTGCTAGCCTTGAATCAGCATATTGGCATCTTTAACAT-TCCTAAG-CCTAATGT
1 AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCT-TTAAGTCC-AATGT
* * *
729020 CGTTGGCCTTGAATCAGCATATTGGCA
64 TGCTGGCCTTGAATCAGCACATTGGCA
729047 TTCTTCTCAT
Statistics
Matches: 337, Mismatches: 51, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
98 30 0.09
99 1 0.00
100 7 0.02
101 82 0.24
102 2 0.01
103 45 0.13
104 169 0.50
105 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (104 bp):
AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTG
CTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTC
Found at i:728827 original size:156 final size:151
Alignment explanation
Indices: 728544--729038 Score: 455
Period size: 156 Copynumber: 3.2 Consensus size: 151
728534 ACACTGACAC
* ** * * *
728544 CTTTAAGTCCAATATTACTAGCCTTGAATCAGCATATTAGTACCTTTATATTTTTAAGTCCAATG
1 CTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCAAATTAGCACCTTTAT-CTTTTAAGTCCAAT-
* * * **
728609 TTCATT-GCCTTGAATCAGCACATTGGCACCTTTTTCATTTTCAAGTCCAATATCACTGGCCTTG
64 ATCGTTGGCTTTGAATCAGCACATTGGCACC-TTTTCATTTT-AAGTCCAATATTGCTGGCCTTG
*
728673 AATCAGCATATTAGCACCTTTATCAA
127 AATCAGCATATTGGCACCTTTATC-A
* * * *
728699 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCAAATTAGCACCTTTTTCTTTCTCAAGTCTAAT
1 CTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCAAATTAGCACCTTTATCTTT-T-AAGTCCAAT
* *
728764 ATCGTTGGCTTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTGCTGGCCTTG
64 ATCGTTGGCTTTGAATCAGCACATTGGCACCTTT-TCAT-TTTAAGTCCAATATTGCTGGCCTTG
* * *
728829 AATCAACATATTGGCACCTTTTTCT
127 AATCAGCATATTGGCACCTTTATCA
* * * * * * * * ** *
728854 TTCTTAAGTCCATTGTCGCTAGCCTTGTATTAGTACATTGGCATCTCCATC-TTTAAGTCCAATG
1 CT-TTAAGTCCAATGTCGCTAGCCTTGAATCAGCAAATTAGCACCTTTATCTTTTAAGTCCAATA
* * *
728918 TCGCTGGCCTTT-AATCAGCACATTGGCACC--TTCATGTTTAAGTCCGATATTGCTAGCCTTGA
65 TCGTTGG-CTTTGAATCAGCACATTGGCACCTTTTCAT-TTTAAGTCCAATATTGCTGGCCTTGA
* *
728980 ATCAGCATATTGGCATCTTTAACA
128 ATCAGCATATTGGCACCTTTATCA
* *
729004 -TTCCTAAG-CCTAATGTCGTTGGCCTTGAATCAGCA
1 CTT--TAAGTCC-AATGTCGCTAGCCTTGAATCAGCA
729039 TATTGGCATT
Statistics
Matches: 279, Mismatches: 51, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
148 1 0.00
149 3 0.01
150 68 0.24
151 1 0.00
153 31 0.11
154 8 0.03
155 54 0.19
156 110 0.39
157 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (151 bp):
CTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCAAATTAGCACCTTTATCTTTTAAGTCCAATAT
CGTTGGCTTTGAATCAGCACATTGGCACCTTTTCATTTTAAGTCCAATATTGCTGGCCTTGAATC
AGCATATTGGCACCTTTATCA
Found at i:729069 original size:52 final size:51
Alignment explanation
Indices: 728544--729149 Score: 371
Period size: 52 Copynumber: 11.8 Consensus size: 51
728534 ACACTGACAC
* ** * * * * *
728544 CTTTAAGTCCAATATTACTAGCCTTGAATCAGCATATTAGTACCTT-TATAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCT-CAT
* * * * * *
728595 TTTTAAGTCCAATGTTC-ATTGCCTTGAATCAGCACATTGGCACCTTTTTCAT
1 CTTTAAGTCCAATG-TCGCTGGCCTTGAATCAGCATATTGGCATC-TTCTCAT
* * * * * *
728647 -TTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTTATCAA
1 CTTT-AAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATC-TTCTCAT
* * * * *
728699 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCAAATTAGCACCTT-T-TT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCTCAT
* * * * * *
728748 CTTTCTCAAGTCTAATATCGTTGGCTTTGAATCAGCATATTGGCACCTTTATCAT
1 C-TT-T-AAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATC-TTCTCAT
* * * *
728803 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAACATATTGGCACCTTTTTC-T
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATC-TTCTCAT
* * * * * * *
728854 TTCTTAAGTCCATTGTCGCTAGCCTTGTATTAGTACATTGGCATC-TC-CAT
1 CT-TTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCTCAT
* * *
728904 CTTTAAGTCCAATGTCGCTGGCCTTTAATCAGCACATTGGCA-CCT-TCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCTCAT
* * * * *
728953 GTTTAAGTCCGATATTGCTAGCCTTGAATCAGCATATTGGCATCTT-TAACAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCT--CAT
* *
729005 -TCCTAAG-CCTAATGTCGTTGGCCTTGAATCAGCATATTGGCATTCTTCTCAT
1 CT-TTAAGTCC-AATGTCGCTGGCCTTGAATCAGCATATTGGCA-TCTTCTCAT
* * * * * *
729057 CTTCAAGTCTAATGTCGCT-GTCGTGAATCAGC-TAATTGACATTCTTCGCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCAT-ATTGGCA-TCTTCTCAT
* ** *
729108 CTTTAAG-CTCAATATCATTGGCCTTGAATCAGCGTATTGGCA
1 CTTTAAGTC-CAATGTCGCTGGCCTTGAATCAGCATATTGGCA
729150 ACTATCATCC
Statistics
Matches: 441, Mismatches: 85, Indels: 57
0.76 0.15 0.10
Matches are distributed among these distances:
48 1 0.00
49 75 0.17
50 11 0.02
51 85 0.19
52 249 0.56
53 14 0.03
54 4 0.01
55 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (51 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCTCAT
Found at i:730798 original size:21 final size:20
Alignment explanation
Indices: 730772--730812 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
730762 CAGCCCATGA
730772 TTCATGCATTTTGAGCTATGT
1 TTCATGCATTTTGAG-TATGT
*
730793 TTCATGCATTTTTAGTATGT
1 TTCATGCATTTTGAGTATGT
730813 CCAACACCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.12, G:0.17, T:0.51
Consensus pattern (20 bp):
TTCATGCATTTTGAGTATGT
Found at i:733807 original size:146 final size:142
Alignment explanation
Indices: 733552--733812 Score: 337
Period size: 146 Copynumber: 1.8 Consensus size: 142
733542 AATACACAGA
* * *
733552 TTTGGCATAAAAGTAACCCGATGATTCCTAGACTTGATTCTAAAAAAATTACTAAAATGCCTTTA
1 TTTGGCATAAAAGCAACCCGATGATTCCTAGACTTGATTCTAAAAAAATTACTAAAATACCCTTA
* *
733617 GAGTATACCTTTGACATGAAAGTATCTCGTAATCCTAAAGGATATAAAAAAGGTGAACCTTATCC
66 GAGTATACCTTCGACATGAAACTATCTCGTAATCCTAAAGGATATAAAAAAGGTGAACCTTATCC
733682 TAAATGTATACC
131 TAAATGTATACC
* * * * **
733694 TTTGGCATGAAAGCGACCCGATGATTGCTTAGGACTTGGTTCTAAGGTAAATTA-TCAAAATACC
1 TTTGGCATAAAAGCAACCCGATGATT-CCTA-GACTTGATTCTAA-AAAAATTACT-AAAATACC
* *
733758 CTTAGGGTTATACCTTCGACATGAAACTA-CTCGGTAATCCTAAAGGATATGAAAA
62 CTTAGAG-TATACCTTCGACATGAAACTATCTC-GTAATCCTAAAGGATATAAAAA
733813 TGTTATAAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
142 23 0.23
143 3 0.03
144 13 0.13
145 21 0.21
146 40 0.40
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (142 bp):
TTTGGCATAAAAGCAACCCGATGATTCCTAGACTTGATTCTAAAAAAATTACTAAAATACCCTTA
GAGTATACCTTCGACATGAAACTATCTCGTAATCCTAAAGGATATAAAAAAGGTGAACCTTATCC
TAAATGTATACC
Found at i:736018 original size:6 final size:6
Alignment explanation
Indices: 735975--736027 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
735965 AAAAAAAAAT
*
735975 AAATT- AAATT- AAATTCA AAATTCA AAATTA AAA-GA AAATTA AAATTA
1 AAATTA AAATTA AAATT-A AAATT-A AAATTA AAATTA AAATTA AAATTA
736022 AAATTA
1 AAATTA
736028 GTAGTCATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 14 0.33
6 17 0.40
7 12 0.28
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (6 bp):
AAATTA
Found at i:736020 original size:17 final size:18
Alignment explanation
Indices: 735991--736024 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
735981 AATTAAATTC
735991 AAAATTCAAAATTAAAAG
1 AAAATTCAAAATTAAAAG
736009 AAAATT-AAAATTAAAA
1 AAAATTCAAAATTAAAA
736025 TTAGTAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (18 bp):
AAAATTCAAAATTAAAAG
Found at i:737398 original size:66 final size:66
Alignment explanation
Indices: 737272--738173 Score: 761
Period size: 66 Copynumber: 13.9 Consensus size: 66
737262 TCGAAAAAAA
* * * *
737272 GTTGACTAGGGCAAAACCAATAAAGTTAACTAAAA-TGACTAGGGTCAAACTTAAGTCAAAATGG
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
737336 G
66 G
* * * **** * * * *
737337 GTTTACTAGGGCGAAATTGGTAAAATCAACTAAAAGTGACTAAGGTGAAACCTAAGTCAAAAAGA
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
*
737402 A
66 G
* * * *
737403 GTTGACCAGGGCAAAATCAATAAAGTTAACTAAAAGTGACTAGGGTCAAACTTAAGTCAAAATGG
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
737468 G
66 G
* * * * * *
737469 GCTGACCAAGG-AGAAACCAGTAAAGTCAACTAAAAGTGACTAAGTTGAAACTTAAGTCGAAAA-
1 GTTGACCAGGGCA-AAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTC-AAAAT
**
737532 GAA
64 GGG
* * * **
737535 GTTGACCTGGGCAAAACCAATAAAGTCAACTAAAAGTGA-TAAGGGCGAAACCTTAGTTGAAATG
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACT-AGGGTGAAACCTAAGTCAAAATG
*
737599 GA
65 GG
** * * *
737601 GTTGATGAGGACAGAACCAATAAAGTCAACTAAAAATGACTAGGGTGAAACCTAAGTCGAAAA-G
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTC-AAAATG
737665 GG
65 GG
* * * ** * * *
737667 GTTGACCAAGGTAAAACCAATAAAGTCAACTAAAAGTAACTAAAGTGAAACATATGTCAAAATAG
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
737732 G
66 G
* * * * *
737733 GTTGACTAGGACAAAACCAATAAAGTCCACTAAAAGTGACTAGGGTGAAACCTAAGTCGAAATGA
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
737798 G
66 G
* * ** * * * * * *
737799 GTTAACTAGGGTGAAACCAATAGAGCCAATTAAAAGTGACTAGGGTGAAACCTAAATCAAAAAGT
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
*
737864 T
66 G
*** * *
737865 GTTGACCAGGTTTAAACAAATAAA-TCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGA
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
737929 G
66 G
* * * * * * *
737930 GTTAACCAAGGCGAAACCAATAAAGT-AACTAAAAGTGACTAGGATGAAACCTAAGTTAAAAAGA
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
*
737994 A
66 G
* * * * * *
737995 GTTGACTA-GG----A-TAATAAAGTGAACTAAAAGTGACTAGGTTGAAACCTAAGTTGAAAA-A
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAG-TCAAAATG
**
738053 AA
65 GG
* * *
738055 GTTGACTAGGGC--AA-C---GAAGTCAACTAAAAGTGGCTAGGGTGAAACCTAAGT---AATGG
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
738111 G
66 G
* * * * * *
738112 GTTGACTAGGGTAGAACCAATAAAGTCAACTAAAAGTGAATAAGGTAAAACCTAAGTCAAAA
1 GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAA
738174 AAAGGTTGAA
Statistics
Matches: 670, Mismatches: 142, Indels: 49
0.78 0.16 0.06
Matches are distributed among these distances:
56 2 0.00
57 11 0.02
59 11 0.02
60 71 0.11
61 7 0.01
63 32 0.05
64 2 0.00
65 130 0.19
66 395 0.59
67 9 0.01
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.20
Consensus pattern (66 bp):
GTTGACCAGGGCAAAACCAATAAAGTCAACTAAAAGTGACTAGGGTGAAACCTAAGTCAAAATGG
G
Found at i:738002 original size:32 final size:31
Alignment explanation
Indices: 737960--738064 Score: 105
Period size: 32 Copynumber: 3.5 Consensus size: 31
737950 TAAAGTAACT
737960 AAAAG-TGACTAGGATGAAACCTAAGTTAAA
1 AAAAGTTGACTAGGATGAAACCTAAGTTAAA
* *
737990 AAGAAGTTGACTAGGAT--AA--TAAAGTGAACT
1 AA-AAGTTGACTAGGATGAAACCT-AAGTTAA-A
*
738020 AAAAG-TGACTAGGTTGAAACCTAAGTTGAAA
1 AAAAGTTGACTAGGATGAAACCTAAGTT-AAA
738051 AAAAGTTGACTAGG
1 AAAAGTTGACTAGG
738065 GCAACGAAGT
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
28 10 0.17
29 9 0.15
30 8 0.13
31 12 0.20
32 21 0.35
ACGTcount: A:0.47, C:0.09, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAAGTTGACTAGGATGAAACCTAAGTTAAA
Found at i:738032 original size:28 final size:28
Alignment explanation
Indices: 737948--738037 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 28
737938 AGGCGAAACC
737948 AATAAAGTAACTAAAAGTGACTAGGATG
1 AATAAAGTAACTAAAAGTGACTAGGATG
*
737976 AA-ACCTAAGTTAA-AAAGAAGTTGACTAGGAT-
1 AATA---AAG-TAACTAA-AAG-TGACTAGGATG
*
738007 AATAAAGTGAACTAAAAGTGACTAGGTTG
1 AATAAAGT-AACTAAAAGTGACTAGGATG
738036 AA
1 AA
738038 ACCTAAGTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 19
0.69 0.04 0.27
Matches are distributed among these distances:
27 1 0.02
28 12 0.24
29 10 0.20
30 7 0.14
31 8 0.16
32 11 0.22
ACGTcount: A:0.49, C:0.08, G:0.21, T:0.22
Consensus pattern (28 bp):
AATAAAGTAACTAAAAGTGACTAGGATG
Found at i:738038 original size:60 final size:59
Alignment explanation
Indices: 737947--738105 Score: 221
Period size: 60 Copynumber: 2.7 Consensus size: 59
737937 AAGGCGAAAC
737947 CAATAAAGTAACTAAAAGTGACTAGGATGAAACCTAAGTT-AAAAAGAAGTTGACTAGGA
1 CAATAAAGTAACTAAAAGTGACTAGGATGAAACCTAAGTTGAAAAA-AAGTTGACTAGGA
* * *
738006 TAATAAAGTGAACTAAAAGTGACTAGGTTGAAACCTAAGTTGAAAAAAAGTTGACTAGGG
1 CAATAAAGT-AACTAAAAGTGACTAGGATGAAACCTAAGTTGAAAAAAAGTTGACTAGGA
** * *
738066 CAACGAAGTCAACTAAAAGTGGCTAGGGTGAAACCTAAGT
1 CAATAAAGT-AACTAAAAGTGACTAGGATGAAACCTAAGT
738106 AATGGGGTTG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
59 8 0.09
60 76 0.85
61 5 0.06
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (59 bp):
CAATAAAGTAACTAAAAGTGACTAGGATGAAACCTAAGTTGAAAAAAAGTTGACTAGGA
Found at i:738519 original size:171 final size:172
Alignment explanation
Indices: 738126--738522 Score: 437
Period size: 174 Copynumber: 2.3 Consensus size: 172
738116 ACTAGGGTAG
* * *
738126 AACCAATAAAGTCAACTAAAAGTGAA-TAAGGTAAAACCTAAGTCAAAAAAAGGTTGAACAAGGC
1 AACCAATAAAGTCAACTAAAAAT-AACTAGGGTAAAACCTAAGTCAAAAAGAGGTTGAACAAGGC
* * * * *
738190 GAAAACAACAAAGTCAATGAGTTTAAGGGGCTGATCGAGACAAAACCAACAATTCAACAAAGGGG
65 GAAAACAACAAAGTCAATGAGTTTAAGAGGCTAATAGAGACAAAACCAACAAGTCAACAAAGAGG
* *
738255 GACTAGGGCGAAACCTAAGTTGAAAAAAAAAGTTGACCAGAGCAA
130 GACTAAGGCAAAACCTAAGTT--AAAAAAAAGTTGACCAGAGCAA
* * * * * ** *
738300 AACCAATAAAGTCAACTAAAAATGACTAGTGTGAAACCTAAATCAAAAAGAGGTTTATTAGGGCG
1 AACCAATAAAGTCAACTAAAAATAACTAGGGTAAAACCTAAGTCAAAAAGAGGTTGAACAAGGCG
* * * * * *
738365 AAACCAATAAAGTC-ATCGAGTTTAAGAGGCTAACTAG-GACAAAATCGATAAGTCAACGAAGAG
66 AAAACAACAAAGTCAAT-GAGTTTAAGAGGCTAA-TAGAGACAAAACCAACAAGTCAACAAAGAG
* **
738428 TGA-TCAAGGCAAAACCTAAGTT-AAAAGCAGTTGACCATG-GCAA
129 GGACT-AAGGCAAAACCTAAGTTAAAAAAAAGTTGACCA-GAGCAA
*
738471 AACTAATAAAGTCAACTAAAAATAACTAGGGTAAAACCTAAGTCAAAAAGAG
1 AACCAATAAAGTCAACTAAAAATAACTAGGGTAAAACCTAAGTCAAAAAGAG
738523 TTAAGGGTTG
Statistics
Matches: 186, Mismatches: 32, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
171 64 0.34
172 1 0.01
173 4 0.02
174 115 0.62
175 2 0.01
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (172 bp):
AACCAATAAAGTCAACTAAAAATAACTAGGGTAAAACCTAAGTCAAAAAGAGGTTGAACAAGGCG
AAAACAACAAAGTCAATGAGTTTAAGAGGCTAATAGAGACAAAACCAACAAGTCAACAAAGAGGG
ACTAAGGCAAAACCTAAGTTAAAAAAAAGTTGACCAGAGCAA
Found at i:739293 original size:74 final size:72
Alignment explanation
Indices: 739134--739768 Score: 414
Period size: 74 Copynumber: 8.6 Consensus size: 72
739124 ATGTTGAAGG
* * *
739134 AAAAGAGTATAATGGGGAATATGTGGTTTCTAAAA-TTTCCATCAACAGCCAAAACAAACTAATA
1 AAAAGAG-CTAATGGGGAATATGTGGTTTCTAAAATTTTCCATCAACAGTCAAAACAAACTAGTA
* *
739198 ACAGTCTGG
65 ATAG-CTGA
* * * * *
739207 AGAATAGTTGATGAGGAATATGTGGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACTAGTA
1 AAAAGAGCTAATGGGGAATATGTGGTTTCTAAAATTTT-CCATCAACAGTCAAAACAAACTAGTA
739272 ATGAGCTGA
65 AT-AGCTGA
* * * *
739281 AAAAGAGCTGATGGGGAATATGTGGTTTCTAAAATTTT-CATTAA-A-ACAAAAACAAACTAATA
1 AAAAGAGCTAATGGGGAATATGTGGTTTCTAAAATTTTCCATCAACAGTC-AAAACAAACTAGTA
739343 ATAGGCT-A
65 ATA-GCTGA
* ** * * * * *
739351 AAGAACAATTAATGGGGAATATGTAGTTTCTAAAATATTTTCATTAATAGTCAAAATAAACTAGT
1 AA-AAGAGCTAATGGGGAATATGTGGTTTCTAAAAT-TTTCCATCAACAGTCAAAACAAACTAGT
*
739416 AATAAGTTG-
64 AAT-AGCTGA
* * *
739425 AAAAGTAGCTAATGGGGAATATGTGGGTTTTTAAAA-TTTCCATCAA-AGCCAAAAAAAACT-GA
1 AAAAG-AGCTAATGGGGAATATGT-GGTTTCTAAAATTTTCCATCAACAGTCAAAACAAACTAG-
*
739487 TAACAGGCT-A
63 TAATA-GCTGA
* * * * * * *
739497 AAGAAAAGCTGATGGGGAATATGTAGTTTCTAAATTTTTTCATCAACAATCAAAACAAACTGGTA
1 AA-AAGAGCTAATGGGGAATATGTGGTTTCTAAAATTTTCCATCAACAGTCAAAACAAACTAGTA
*
739562 ATGACCT-A
65 AT-AGCTGA
* * * * * * * *
739570 AAGAGTAGCTGATGGGGAATACGTGGTTTCTAAACTTTTCCCATTAACAGCCGAAACAAACTAAT
1 AAAAG-AGCTAATGGGGAATATGTGGTTTCTAAAATTTT-CCATCAACAGTCAAAACAAACTAGT
*
739635 AATAGGCCAGA
64 AATA-G-CTGA
* * * ** * * *
739646 TAAGAAGAACACAATAGGGAATACATGGTTTCTAAAATTTTCCCACCAATAGTCAAAATAAACT-
1 -AA-AAGAGC-TAATGGGGAATATGTGGTTTCTAAAATTTT-CCATCAACAGTCAAAACAAACTA
* *
739710 GATAGCA-AGTTGT
62 G-TA--ATAGCTGA
* ** *
739723 AAAAGAACATAATAAGGAATATGTGGTTTCTAAAATCTTCCATCAA
1 AAAAGAGC-TAATGGGGAATATGTGGTTTCTAAAATTTTCCATCAA
739769 TAACTGAAAC
Statistics
Matches: 445, Mismatches: 84, Indels: 65
0.75 0.14 0.11
Matches are distributed among these distances:
70 5 0.01
71 57 0.13
72 78 0.18
73 76 0.17
74 126 0.28
75 46 0.10
76 3 0.01
77 5 0.01
78 47 0.11
79 1 0.00
80 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (72 bp):
AAAAGAGCTAATGGGGAATATGTGGTTTCTAAAATTTTCCATCAACAGTCAAAACAAACTAGTAA
TAGCTGA
Found at i:739311 original size:146 final size:145
Alignment explanation
Indices: 739145--739641 Score: 597
Period size: 145 Copynumber: 3.4 Consensus size: 145
739135 AAAGAGTATA
* **
739145 ATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAGCCAAAACAAACTAATAACAGTCTGGAGA
1 ATGGGGAATATGTGGTTTCTAAAATTTCCATCAA-AGCCAAAACAAACTAATAACAGGCTAAAGA
* * * *
739210 ATAGTTGATGAGGAATATGTGGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACTAGTAATG
65 AAAGTTGATGGGGAATATGTAGTTTCTAAAATTTT-TCATCAACAGTCAAAACAAACTAGTAATG
739275 AGCTGAAAAAG-AGCTG
129 AGCTGAAAAAGTAGCTG
* * * * *
739291 ATGGGGAATATGTGGTTTCTAAAATTTTCATTAAAACAAAAACAAACTAATAATAGGCTAAAGAA
1 ATGGGGAATATGTGGTTTCTAAAATTTCCATCAAAGCCAAAACAAACTAATAACAGGCTAAAGAA
* * * * *
739356 CAA-TTAATGGGGAATATGTAGTTTCTAAAATATTTTCATTAATAGTCAAAATAAACTAGTAATA
66 -AAGTTGATGGGGAATATGTAGTTTCTAAAAT-TTTTCATCAACAGTCAAAACAAACTAGTAATG
* *
739420 AGTTG-AAAAGTAGCTA
129 AGCTGAAAAAGTAGCTG
* * *
739436 ATGGGGAATATGTGGGTTTTTAAAATTTCCATCAAAGCCAAAAAAAACTGATAACAGGCTAAAGA
1 ATGGGGAATATGT-GGTTTCTAAAATTTCCATCAAAGCCAAAACAAACTAATAACAGGCTAAAGA
* * * *
739501 AAAGCTGATGGGGAATATGTAGTTTCTAAATTTTTTCATCAACAATCAAAACAAACTGGTAATGA
65 AAAGTTGATGGGGAATATGTAGTTTCTAAAATTTTTCATCAACAGTCAAAACAAACTAGTAATGA
* *
739566 CCT-AAAGAGTAGCTG
130 GCTGAAAAAGTAGCTG
* * * * *
739581 ATGGGGAATACGTGGTTTCTAAACTTTTCCCATTAACAGCCGAAACAAACTAATAATAGGC
1 ATGGGGAATATGTGGTTTCTAAA-ATTT-CCATCAA-AGCCAAAACAAACTAATAACAGGC
739642 CAGATAAGAA
Statistics
Matches: 294, Mismatches: 48, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
144 14 0.05
145 149 0.51
146 111 0.38
147 20 0.07
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (145 bp):
ATGGGGAATATGTGGTTTCTAAAATTTCCATCAAAGCCAAAACAAACTAATAACAGGCTAAAGAA
AAGTTGATGGGGAATATGTAGTTTCTAAAATTTTTCATCAACAGTCAAAACAAACTAGTAATGAG
CTGAAAAAGTAGCTG
Found at i:739380 original size:145 final size:147
Alignment explanation
Indices: 739145--739709 Score: 556
Period size: 145 Copynumber: 3.8 Consensus size: 147
739135 AAAGAGTATA
* * **
739145 ATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAGCCAAAACAAACTAATAACAGTCTGGAGA
1 ATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAGCAAAAACAAACTAATAACAGGCTAAAGA
* * * * *
739210 ATAGTTGATGAGGAATATGTGGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACTAGTAATG
66 AAACTTAATGGGGAATATGTAGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACTAGTAATG
739275 AGCTGAAAAAG-AGCTG
131 AGCTGAAAAAGTAGCTG
* * * *
739291 ATGGGGAATATGTGGTTTCTAAAATTTTCATTAA-AACAAAAACAAACTAATAATAGGCTAAAGA
1 ATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAGCAAAAACAAACTAATAACAGGCTAAAGA
* * * *
739355 ACAA-TTAATGGGGAATATGTAGTTTCTAAAATATTT-TCATTAATAGTCAAAATAAACTAGTAA
66 A-AACTTAATGGGGAATATGTAGTTTCTAAAAT-TTTCCCATCAACAGTCAAAACAAACTAGTAA
* * *
739418 TAAGTTG-AAAAGTAGCTA
129 TGAGCTGAAAAAGTAGCTG
* *
739436 ATGGGGAATATGTGGGTTTTTAAAATTTCCATCAA-AGCCAAAAA-AAACTGATAACAGGCTAAA
1 ATGGGGAATATGT-GGTTTCTAAAATTTCCATCAACAG-CAAAAACAAACTAATAACAGGCTAAA
* ** * *
739499 GAAAAGC-TGATGGGGAATATGTAGTTTCT-AAATTTTTTCATCAACAATCAAAACAAACTGGTA
64 GAAAA-CTTAATGGGGAATATGTAGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACTAGTA
* *
739562 ATGACCT-AAAGAGTAGCTG
128 ATGAGCTGAAAAAGTAGCTG
* * * ** * *
739581 ATGGGGAATACGTGGTTTCTAAACTTTTCCCATTAACAGCCGAAACAAACTAATAATAGGCCAGA
1 ATGGGGAATATGTGGTTTCTAAA-ATTT-CCATCAACAGCAAAAACAAACTAATAACAGG-C-TA
** * ** * * * *
739646 TAAGAAGAACACAATAGGGAATACATGGTTTCTAAAATTTTCCCACCAATAGTCAAAATAAACT
62 -AAGAA-AACTTAATGGGGAATATGTAGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACT
739710 GATAGCAAGT
Statistics
Matches: 343, Mismatches: 57, Indels: 32
0.79 0.13 0.07
Matches are distributed among these distances:
144 17 0.05
145 150 0.44
146 106 0.31
147 20 0.06
148 1 0.00
149 1 0.00
150 6 0.02
151 18 0.05
152 24 0.07
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (147 bp):
ATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAGCAAAAACAAACTAATAACAGGCTAAAGA
AAACTTAATGGGGAATATGTAGTTTCTAAAATTTTCCCATCAACAGTCAAAACAAACTAGTAATG
AGCTGAAAAAGTAGCTG
Found at i:740060 original size:61 final size:59
Alignment explanation
Indices: 739953--740133 Score: 200
Period size: 61 Copynumber: 3.0 Consensus size: 59
739943 TAGGCAAAAT
* * *
739953 CAAGACTCAACGAAATGGCTTGGATGAAACCAAAAACCTAAACAATGACTTGGGTGAAA
1 CAAGACTCAACGAAATGGCTTAGATAAAACCAGAAACCTAAACAATGACTTGGGTGAAA
* * * * **
740012 CTAAGACTCAACAAAAATGGCTTAGATAAAACTAGAATCTTAAACAATGACTTGGGCAAAA
1 C-AAGACTCAAC-GAAATGGCTTAGATAAAACCAGAAACCTAAACAATGACTTGGGTGAAA
* * * * **
740073 GCAAGACTCAATGAAACGACCTAGATAAAACCAGAAACCTAAACAATGACTTAAGTGAAA
1 -CAAGACTCAACGAAATGGCTTAGATAAAACCAGAAACCTAAACAATGACTTGGGTGAAA
740133 C
1 C
740134 CAAAATAGTC
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
59 2 0.02
60 47 0.48
61 48 0.49
62 1 0.01
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.18
Consensus pattern (59 bp):
CAAGACTCAACGAAATGGCTTAGATAAAACCAGAAACCTAAACAATGACTTGGGTGAAA
Found at i:740690 original size:83 final size:85
Alignment explanation
Indices: 740593--740785 Score: 239
Period size: 87 Copynumber: 2.3 Consensus size: 85
740583 ACTAAAGTGC
* * *
740593 AATGCTTATGAAATGATGCAAATACTAATGTCATCCAAAGA-GCATATAT-GTG-TGATGCAAAT
1 AATGCATATGAAATGATGCAAATACTAATGTCATCCAAA-ATGCACATATGGTGACGATGCAAAT
740655 GCAAGCATCAATAAAAAGGAA
65 GCAAGCATCAATAAAAAGGAA
* ** *
740676 AATGCATATTAAATGATGCAAATACTAATGTCATTTAAAATGCACATGTGGTGAAACGATGCAAA
1 AATGCATATGAAATGATGCAAATACTAATGTCATCCAAAATGCACATATGGTG--ACGATGCAAA
* ** *
740741 TGCAAGCATTAATAAAGTGGTA
64 TGCAAGCATCAATAAAAAGGAA
740763 AATGCATATGAAATGATGCAAAT
1 AATGCATATGAAATGATGCAAAT
740786 GCCAATTTCA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
82 1 0.01
83 41 0.44
84 3 0.03
87 48 0.52
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (85 bp):
AATGCATATGAAATGATGCAAATACTAATGTCATCCAAAATGCACATATGGTGACGATGCAAATG
CAAGCATCAATAAAAAGGAA
Found at i:740766 original size:87 final size:87
Alignment explanation
Indices: 740646--740900 Score: 289
Period size: 88 Copynumber: 2.9 Consensus size: 87
740636 ATATATGTGT
* * * * * *
740646 GATGCAAATGCAAGCATCAATAAAAAGGAAAATGCATATTAAATGATGCAAATACTAATGTCATT
1 GATGCAAATGCAAGCATTAATAAAGAGGAAAATGCATATGAAATGATGCAAATACCAATATCATA
*
740711 TAAAATGCACATGTGGTGAAAC
66 TAAAATGCAAATGTGGTGAAAC
* * * *
740733 GATGCAAATGCAAGCATTAATAAAGTGGTAAATGCATATGAAATGATGCAAATGCCAATTTCATA
1 GATGCAAATGCAAGCATTAATAAAGAGGAAAATGCATATGAAATGATGCAAATACCAATATCATA
* *
740798 TAAAATGTAAATGTGGGTGAAAT
66 TAAAATGCAAATGT-GGTGAAAC
* * * *
740821 GATGGAACCAT--AAGCATTAATAAAGAAGCAAATGCACATGAAATGATGCAAATACCAATATCA
1 GATGCAA--ATGCAAGCATTAATAAAGAGGAAAATGCATATGAAATGATGCAAATACCAATATCA
** *
740884 CCTAAAATGCAGATGTG
64 TATAAAATGCAAATGTG
740901 CCAAAATAAT
Statistics
Matches: 142, Mismatches: 23, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
87 69 0.49
88 71 0.50
90 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (87 bp):
GATGCAAATGCAAGCATTAATAAAGAGGAAAATGCATATGAAATGATGCAAATACCAATATCATA
TAAAATGCAAATGTGGTGAAAC
Found at i:740808 original size:44 final size:43
Alignment explanation
Indices: 740675--740810 Score: 100
Period size: 44 Copynumber: 3.1 Consensus size: 43
740665 ATAAAAAGGA
* * * * *
740675 AAATGCATATTAAATGATGCAAATACTAATGTCATTTAAAATGC
1 AAATGCATATGAAATGATGCAAATGCCAAT-TCATATAAAATGT
* * * * *
740719 ACATG--TGGTGAAACGATGCAAATG-CAA-GCATTAATAAAGTGGT
1 AAATGCAT-ATGAAATGATGCAAATGCCAATTCA-T-ATAAAAT-GT
740762 AAATGCATATGAAATGATGCAAATGCCAATTTCATATAAAATGT
1 AAATGCATATGAAATGATGCAAATGCCAA-TTCATATAAAATGT
740806 AAATG
1 AAATG
740811 TGGGTGAAAT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
40 2 0.03
41 1 0.01
42 8 0.12
43 18 0.26
44 26 0.38
45 10 0.15
46 1 0.01
47 2 0.03
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (43 bp):
AAATGCATATGAAATGATGCAAATGCCAATTCATATAAAATGT
Found at i:740934 original size:88 final size:87
Alignment explanation
Indices: 740645--740960 Score: 285
Period size: 87 Copynumber: 3.6 Consensus size: 87
740635 CATATATGTG
* * * * * * *
740645 TGATGCAAATGCAAGCATCAATAAA-AAGGAAAATGCATATTAAATGATGCAAATACTAATGTCA
1 TGATGCAACTACAAGCATCAATAAAGAA-GCAAATGCACATGAAATGATGCAAATACCAATATCA
* *
740709 TTTAAAATGCACATGTGGTGAAA
65 TATAAAATGCAAATGTGGTGAAA
* * * * ** * * * *
740732 CGATGCAAATGCAAGCATTAATAAAGTGGTAAATGCATATGAAATGATGCAAATGCCAATTTCAT
1 TGATGCAACTACAAGCATCAATAAAGAAGCAAATGCACATGAAATGATGCAAATACCAATATCAT
*
740797 ATAAAATGTAAATGTGGGTGAAA
66 ATAAAATGCAAATGT-GGTGAAA
* * * * *
740820 TGATGGAACCATAAGCATTAATAAAGAAGCAAATGCACATGAAATGATGCAAATACCAATATCAC
1 TGATGCAACTACAAGCATCAATAAAGAAGCAAATGCACATGAAATGATGCAAATACCAATATCAT
* * ***
740885 CTAAAATGCAGATGTGCCAAAA
66 ATAAAATGCAAATGTGGTGAAA
* * * *
740907 TAATGCAACTACAAACATCAATAAAAGAA-CAAGTGTACATGAAATGATGCAAAT
1 TGATGCAACTACAAGCATCAAT-AAAGAAGCAAATGCACATGAAATGATGCAAAT
740961 GCGAATGTGA
Statistics
Matches: 187, Mismatches: 39, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
87 110 0.59
88 77 0.41
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (87 bp):
TGATGCAACTACAAGCATCAATAAAGAAGCAAATGCACATGAAATGATGCAAATACCAATATCAT
ATAAAATGCAAATGTGGTGAAA
Found at i:744246 original size:165 final size:163
Alignment explanation
Indices: 744040--744792 Score: 754
Period size: 165 Copynumber: 4.6 Consensus size: 163
744030 TTCAAACATA
*
744040 AAAATTCATCAAATATTATCATTTA-TTCATATTAATTCAGTTTTCAAAAATTAATTCATTTTCA
1 AAAATTCATCAAATATTATTATTTATTTCATATTAATT-AGTTTTCAAAAATTAATTCATTTTCA
* * *
744104 TGAGTTTTTTATTTTTTCCTTGAAATTTCTCTTTTTTCGAAATACGGTGTTTTCTACATAGTAAA
65 TGAGTTTTTAATTTTTTCCTTGAAATTTCTCTTTTTTCGAAATACGGTGTTTTCTACTTCGTAAA
* *
744169 TTTTTTCGAGGGGGCTTTTC-TCGGTTTTCATTTTT
130 TTTTTTCG-GGGGG-TTTTCATAGGTTTTAATTTTT
* * * *
744204 AAAATTCATCAAACATCATTATTTATTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTAA
1 AAAATTCATCAAATATTATTATTTATTTCATATTAATT-AGTTTTCAAAAATTAATTCATTTTCA
* * * *
744269 TGAGTTTTTTATTTTTT-CTTGAAA-TTCTCCTTTTTCTAAAATATGGTGTTTTCTACTTCGTAA
65 TGAGTTTTTAATTTTTTCCTTGAAATTTCTCTTTTTTC-GAAATACGGTGTTTTCTACTTCGTAA
* * **
744332 ATTTTTTTAAGGGGAGTTTTC-TAATTTTTCAATTTTT
129 A-TTTTTT-CGGGGGGTTTTCATAGGTTTT-AATTTTT
* * ** * * *
744369 AAAATTTATCAAACACCATTATTTATTTCATATTAAATAATTTTTCAAAAATTCATTCATTTTCA
1 AAAATTCATCAAATATTATTATTTATTTCATATT-AATTAGTTTTCAAAAATTAATTCATTTTCA
* * * * * * * * * *
744434 TAAATTTTTGAATTTGTTCCTTGAAAATCCT-TTTTTTTGAAATACGATATTTTCTTCTCCGTAA
65 TGAGTTTTT-AATTTTTTCCTTGAAATTTCTCTTTTTTCGAAATACGGTGTTTTCTACTTCGTAA
** * *
744498 ATTTTTTCGGGAGGAATTTCATGGGTTTAAAATTTTT
129 ATTTTTTCGGG-GGGTTTTCATAGGTTT-TAATTTTT
* * ** * *
744535 AAAATTCATC--ATATTACTATTTA-ATCACCGTTAAATTAGTTTTGAAAATTTAATTCATTTTC
1 AAAATTCATCAAATATTATTATTTATTTCA-TATT-AATTAGTTTTCAAAAATTAATTCATTTTC
* * *
744597 ATGAGTTTTTAAATTTTTTCCTTGAAATTTTTCTATTTTCGAAATACGGAGTTTTCTACTTCGTA
64 ATGAGTTTTT-AATTTTTTCCTTGAAATTTCTCTTTTTTCGAAATACGGTGTTTTCTACTTCGTA
* *
744662 AATATTTTT-GGGGGGATTTTTCATTGTTTTTAATTTTT
128 AAT-TTTTTCGGGGGG--TTTTCATAGGTTTTAATTTTT
* * *
744700 AAAATTTATCAAATTTTATTATTTATTTCATATTAAATTAGTTTTCAAAAATTCACTT-ATTTTC
1 AAAATTCATCAAATATTATTATTTATTTCATATT-AATTAGTTTTCAAAAATT-AATTCATTTTC
* *
744764 ATGAGTTTTGAATTTTTTCTTTGAAATTT
64 ATGAGTTTTTAATTTTTTCCTTGAAATTT
744793 TCATGTTTCC
Statistics
Matches: 481, Mismatches: 87, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
163 14 0.03
164 128 0.27
165 189 0.39
166 84 0.17
167 57 0.12
168 9 0.02
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (163 bp):
AAAATTCATCAAATATTATTATTTATTTCATATTAATTAGTTTTCAAAAATTAATTCATTTTCAT
GAGTTTTTAATTTTTTCCTTGAAATTTCTCTTTTTTCGAAATACGGTGTTTTCTACTTCGTAAAT
TTTTTCGGGGGGTTTTCATAGGTTTTAATTTTT
Found at i:744858 original size:331 final size:327
Alignment explanation
Indices: 744040--744873 Score: 834
Period size: 331 Copynumber: 2.5 Consensus size: 327
744030 TTCAAACATA
* * *
744040 AAAATTCATCAAATATTATCATTTA-TTCATATT-AATTCAGTTTTCAAAAATTAATTCATTTTC
1 AAAATTTATCAAATATTATTATTTATTTCATATTAAATT-AGTTTTCAAAAATTCATTCATTTTC
** *
744103 ATGAGTTTTTTATTTTTTCCTTGAAATTTCTCTTTTTTCGAAATACGGTGTTTTCTA--CATAGT
65 ATGAGTTTTGAATTTTTTCCTTGAAATTT-TCTTTTTTCGAAATAC-GAGTTTTCTATTC-TA-T
** * ** *
744166 AAATTTTTTCGAGGG-GGCTTTTCTCGGTTT-TCATTTTTAAAATTCATCAAACATCATTATTTA
126 AAATTTTTT-G-GGGAGAATTTTATCGGTTTAAAATTTTTAAAATTCATC-AACATCACTATTTA
* * * *
744229 TTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTAATGAGTTTTTTATTTTTTCTTGAAAT
188 TATCACATTAATTCAGTTTTGAAAAATTAATTCATTTTAATGAGTTTTTAATTTTTTCTTGAAAT
* * *
744294 TCTCCTTTTTCTAAAATATGGTGTTTTCTACTTCGTAAATTTTTTTAAGGGGAGTTTTCTAATTT
253 TCTCCTTTTTCTAAAATACGGAGTTTTCTACTTCGTAAATATTTTTAAGGGGAGTTTTCTAATTT
744359 TTCAATTTTT
318 TTCAATTTTT
* ** * *
744369 AAAATTTATCAAACACCATTATTTATTTCATATTAAATAATTTTTCAAAAATTCATTCATTTTCA
1 AAAATTTATCAAATATTATTATTTATTTCATATTAAATTAGTTTTCAAAAATTCATTCATTTTCA
* * * * * **
744434 TAAATTTTTGAATTTGTTCCTTGAAAATCCTT-TTTTTT-GAAATACGATATTTTCT-TCTCCGT
66 T-GAGTTTTGAATTTTTTCCTTG-AAAT-TTTCTTTTTTCGAAATACGA-GTTTTCTAT-TCTAT
* * * * *
744496 AAATTTTTTCGGGAGGAATTTCATGGGTTTAAAATTTTTAAAATTCATC-ATATTACTATTTA-A
126 AAATTTTTTGGGGA-GAATTTTATCGGTTTAAAATTTTTAAAATTCATCAACATCACTATTTATA
* * *
744559 TCACCGTTAAATT-AGTTTTGAAAATTTAATTCATTTTCATGAGTTTTTAAATTTTTTCCTTGAA
190 TCA-CATT-AATTCAGTTTTGAAAAATTAATTCATTTTAATGAGTTTTT-AATTTTTT-CTTGAA
* * * ** * *
744623 ATTTTTCTATTTTC-GAAATACGGAGTTTTCTACTTCGTAAATATTTTTGGGGGGATTTTTC-AT
251 ATTCTCCT-TTTTCTAAAATACGGAGTTTTCTACTTCGTAAATATTTTTAAGGGGAGTTTTCTAA
*
744686 TGTTTTTAATTTTT
315 T-TTTTCAATTTTT
*
744700 AAAATTTATCAAATTTTATTATTTATTTCATATTAAATTAGTTTTCAAAAATTCACTT-ATTTTC
1 AAAATTTATCAAATATTATTATTTATTTCATATTAAATTAGTTTTCAAAAATTCA-TTCATTTTC
* * * * * *
744764 ATGAGTTTTGAATTTTTTCTTTGAAATTTTCATGTTTCCAAAAAATTGAGTTTTCTATTCTATAA
65 ATGAGTTTTGAATTTTTTCCTTGAAATTTTC-TTTTTTCGAAATA-CGAGTTTTCTATTCTATAA
* * *
744829 ATATTTTTGGGGAGATTTTTGTCGGTTTAAAATTTTTGAAATTCA
128 AT-TTTTTGGGGAGAATTTTATCGGTTTAAAATTTTTAAAATTCA
744874 ACTAATATTG
Statistics
Matches: 408, Mismatches: 72, Indels: 48
0.77 0.14 0.09
Matches are distributed among these distances:
328 8 0.02
329 69 0.17
330 100 0.25
331 205 0.50
332 25 0.06
333 1 0.00
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.50
Consensus pattern (327 bp):
AAAATTTATCAAATATTATTATTTATTTCATATTAAATTAGTTTTCAAAAATTCATTCATTTTCA
TGAGTTTTGAATTTTTTCCTTGAAATTTTCTTTTTTCGAAATACGAGTTTTCTATTCTATAAATT
TTTTGGGGAGAATTTTATCGGTTTAAAATTTTTAAAATTCATCAACATCACTATTTATATCACAT
TAATTCAGTTTTGAAAAATTAATTCATTTTAATGAGTTTTTAATTTTTTCTTGAAATTCTCCTTT
TTCTAAAATACGGAGTTTTCTACTTCGTAAATATTTTTAAGGGGAGTTTTCTAATTTTTCAATTT
TT
Found at i:746737 original size:152 final size:147
Alignment explanation
Indices: 746393--746746 Score: 374
Period size: 147 Copynumber: 2.4 Consensus size: 147
746383 TGAAATTTAT
* * * * *
746393 AATATTCTTATGGGTATCCGTGGGGGTATAAAAATTTTACAAAACTTTTTGTATCTTTTCGGTTC
1 AATATTCTTATGGGTATCCGTAGGGATATAGAAA-TTTACAAAACTTTTTGTATCTTTTCAGTCC
* * **
746458 TCCATTAAGGTACGAAATAAATTTTTTGAAAAATAAAAAAATAAATTAAATAAAAATTATGATCC
65 TCCATTAAGGTACGAAATAAATTTTTCGAAAAATAAAAAAATAAATTAAATAAAAACTATGATAA
746523 CAATTTTTCAGAATTTCC
130 CAATTTTTCAGAATTTCC
* * *
746541 AATATTCTTATGGGCATCCGTAGAGATAT-GAAAATTTTCAAAACTTTTTGTATCTTTTCAGTCC
1 AATATTCTTATGGGTATCCGTAGGGATATAG-AAATTTACAAAACTTTTTGTATCTTTTCAGTCC
* * * ***
746605 TCCATTAAGGTACGAAATGAAATTTTTCG-AAAA-AACAAAATAAATTTTAATTATTGCTATGTT
65 TCCATTAAGGTACGAAAT-AAATTTTTCGAAAAATAAAAAAATAAA-TTAAATAAAAACTATG--
* *
746668 ATAAATAATTTTTTACATAATTTCTC
126 AT-AACAA-TTTTT-CAGAATTTC-C
* * * *
746694 -ATATTCTTATGGTTATTCGTAGGGATATAGACATTCACAAAACTTTTTGTATC
1 AATATTCTTATGGGTATCCGTAGGGATATAGAAATTTACAAAACTTTTTGTATC
746747 CTCACAGTTT
Statistics
Matches: 169, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
146 10 0.06
147 59 0.35
148 37 0.22
149 2 0.01
150 2 0.01
151 5 0.03
152 52 0.31
153 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (147 bp):
AATATTCTTATGGGTATCCGTAGGGATATAGAAATTTACAAAACTTTTTGTATCTTTTCAGTCCT
CCATTAAGGTACGAAATAAATTTTTCGAAAAATAAAAAAATAAATTAAATAAAAACTATGATAAC
AATTTTTCAGAATTTCC
Found at i:747186 original size:156 final size:154
Alignment explanation
Indices: 746874--747231 Score: 457
Period size: 156 Copynumber: 2.3 Consensus size: 154
746864 TTTATCATCC
* * * *
746874 TTTTAAGTCCTTTAAGGTTATTAGGTACTTCTAAGTCGAAGGTATCCCATAAGGGTATTTTTGTA
1 TTTTAAGCCCTTTAAGGGTATCAGGTACTTCTACGTCGAAGGTATCCCATAAGGGTATTTTTGTA
* * * *
746939 ATTTTTCAGAATCGAGTCCTAGGTTGTCCCCGGGTCCGCTTCTATGCCAAAGGTGGATATTTAAG
66 ATTTTTCAAAATCGAGTCCTAGGTTGTCACCAGGTCCGCTTCTATGCCAAAGGTAGATATTTAAG
* *
747004 GTAGGTTCATCCCGGTTACAATTT
131 GAAGGTTCATCCCGGTTAAAATTT
* * *
747028 TTTTGAAAGCCCTTTAGGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAAGGGTATTTTTG
1 TTTT--AAGCCCTTTAAGGGTATCAGGTACTTCTACGTCGAAGGTATCCCATAAGGGTATTTTTG
* * * * *
747093 TAATTTTTTAAAATTGAGTCTTAGGTTGTCACCAGGTCTGCTTTTATGCCAAAGGTAGATATTT-
64 TAATTTTTCAAAATCGAGTCCTAGGTTGTCACCAGGTCCGCTTCTATGCCAAAGGTAGATATTTA
* **
747157 TGGAAGGTTCATCCCTTTTAAAATATT
129 AGGAAGGTTCATCCCGGTTAAAAT-TT
* * * *
747184 TTTTAAGTCCTTTAAAGGTATCAGATACTTCTACGTTGAAGGTATCCC
1 TTTTAAGCCCTTTAAGGGTATCAGGTACTTCTACGTCGAAGGTATCCC
747232 TTAGGGGCAT
Statistics
Matches: 174, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
154 42 0.24
155 19 0.11
156 113 0.65
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (154 bp):
TTTTAAGCCCTTTAAGGGTATCAGGTACTTCTACGTCGAAGGTATCCCATAAGGGTATTTTTGTA
ATTTTTCAAAATCGAGTCCTAGGTTGTCACCAGGTCCGCTTCTATGCCAAAGGTAGATATTTAAG
GAAGGTTCATCCCGGTTAAAATTT
Found at i:747478 original size:48 final size:46
Alignment explanation
Indices: 747402--747707 Score: 264
Period size: 48 Copynumber: 6.8 Consensus size: 46
747392 ATCTTCATCT
* *
747402 TTAAGTCCAATATCACTGGTCC-TGAATCAGCATATTGGCACTTTGTC
1 TTAAGACCAATATCGCTGG-CCTTGAATCAGCATATTGGCAC-TTGTC
* * *
747449 TCTAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCA------
1 T-TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTGTC
* *
747490 -TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTC
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTGTC
* *
747536 TCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA------
1 T-TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTGTC
*
747577 -TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTC
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTGTC
* * * *
747623 TTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGGCACCTTCATC
1 -TTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTT-GTC
* * *
747672 TTTAAGTCCAATATTGTTGGCCTTGAATCAGCATAT
1 -TTAAGACCAATATCGCTGGCCTTGAATCAGCATAT
747708 CAGCATCTTT
Statistics
Matches: 213, Mismatches: 25, Indels: 40
0.77 0.09 0.14
Matches are distributed among these distances:
39 70 0.33
47 3 0.01
48 106 0.50
49 34 0.16
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (46 bp):
TTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTGTC
Found at i:747519 original size:39 final size:39
Alignment explanation
Indices: 747462--747615 Score: 182
Period size: 39 Copynumber: 3.7 Consensus size: 39
747452 AAGACTAATG
747462 TCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATA
* * * *
747501 TCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCA---------TAAGCCCAATA
747549 TCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATA
*
747588 TCGCTGGCCTTGAATCAGCATATTGGCA
1 TCGCTGGCCTTGAATCAGCACATTGGCA
747616 CCTTGTCTTT
Statistics
Matches: 97, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
39 62 0.64
48 35 0.36
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATA
Found at i:747554 original size:87 final size:87
Alignment explanation
Indices: 747403--747663 Score: 434
Period size: 87 Copynumber: 3.0 Consensus size: 87
747393 TCTTCATCTT
* * *
747403 TAAGTCCAATATCACTGGTCC-TGAATCAGCATATTGGCACTTTGTCTCTAAGACTAATGTCGCT
1 TAAGCCCAATATCACTGG-CCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCT
747467 GGCCTTGAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
747490 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
1 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
747555 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * * *
747577 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGTCCAATATCGCTG
1 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
*
747642 GCCTTGAATCAACACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
747664 CCTTCATCTT
Statistics
Matches: 165, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
86 2 0.01
87 163 0.99
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (87 bp):
TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:748627 original size:19 final size:18
Alignment explanation
Indices: 748603--748665 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
748593 AACAAGTAAC
748603 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
748622 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
*
748635 TGTATCGATGCATAAGTAT
1 TGTATCGATACATAAGT-T
748654 TGTATCGATACA
1 TGTATCGATACA
748666 ATGTATCGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:748649 original size:32 final size:32
Alignment explanation
Indices: 748603--748673 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
748593 AACAAGTAAC
*
748603 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
748635 TGTATCGATGCATAAGTATTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
748667 TGTATCG
1 TGTATCG
748674 TTACGAAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:754933 original size:35 final size:35
Alignment explanation
Indices: 754885--754973 Score: 110
Period size: 35 Copynumber: 2.5 Consensus size: 35
754875 TTCAGTGGCA
* *
754885 TTTCTTTTGAAAGTCCACAACTCCGTGGCAA-CTTT
1 TTTCTTTT-AAAGTCCACAACTCAGTGGCAACCATT
*
754920 TTTCTTTTCAAAGTCCATAACTCAGTGGCAACCATT
1 TTTCTTTT-AAAGTCCACAACTCAGTGGCAACCATT
*
754956 TTTC-GTTAAAGTCCACAA
1 TTTCTTTTAAAGTCCACAA
754974 TTTTGTGACA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 10 0.21
35 30 0.64
36 7 0.15
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (35 bp):
TTTCTTTTAAAGTCCACAACTCAGTGGCAACCATT
Found at i:755089 original size:32 final size:32
Alignment explanation
Indices: 755045--755107 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
755035 TTAGTGACAC
*
755045 CCTTCTCTAAAGCCCATAGAAATCGGTGGCAA
1 CCTTCTCTAAAGCCCACAGAAATCGGTGGCAA
* *
755077 CCTTCT-TCAAAGCCCACATAAGTCGGTGGCA
1 CCTTCTCT-AAAGCCCACAGAAATCGGTGGCA
755108 TTTTTTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 1 0.04
32 26 0.96
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (32 bp):
CCTTCTCTAAAGCCCACAGAAATCGGTGGCAA
Found at i:755158 original size:32 final size:32
Alignment explanation
Indices: 755118--755267 Score: 117
Period size: 32 Copynumber: 4.7 Consensus size: 32
755108 TTTTTTTTAG
* *
755118 AAGCCCACACAAGCTGGTGGCAACCTCTTTTA
1 AAGCCCACACAAGCTAGTGGCAACCTCTTCTA
* * *
755150 ATGTCCACACAAGTTAGTGGCAACCTCTTCTA
1 AAGCCCACACAAGCTAGTGGCAACCTCTTCTA
* * * *
755182 AAGCCCACACAAG-TCAATGGCAATCTTTTTTA
1 AAGCCCACACAAGCT-AGTGGCAACCTCTTCTA
* * * *
755214 AAGTCCACGCAAG-TCGATGGCAACCCCCTTC-A
1 AAGCCCACACAAGCTAG-TGGCAA-CCTCTTCTA
* *
755246 AAGCCCACACAAGTTGGTGGCA
1 AAGCCCACACAAGCTAGTGGCA
755268 TCTTTTTTTT
Statistics
Matches: 92, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
31 1 0.01
32 86 0.93
33 5 0.05
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (32 bp):
AAGCCCACACAAGCTAGTGGCAACCTCTTCTA
Found at i:755185 original size:96 final size:96
Alignment explanation
Indices: 755070--755267 Score: 231
Period size: 96 Copynumber: 2.1 Consensus size: 96
755060 ATAGAAATCG
* ** *
755070 GTGGCAACCTTCTTCAAAGCCCACATAAGTCGGTGGC-ATTTTTTTTAGAAGCCCACACAAG-CT
1 GTGGCAACCTTCTTCAAAGCCCACACAAGTCAATGGCAATCTTTTTTA-AAGCCCACACAAGTC-
* * * * * *
755133 GGTGGCAACCTCTTTTAATGTCCACACAAGTTA
64 GATGGCAACCCCCTTCAAAGCCCACACAAGTTA
* *
755166 GTGGCAACC-TCTTCTAAAGCCCACACAAGTCAATGGCAATCTTTTTTAAAGTCCACGCAAGTCG
1 GTGGCAACCTTCTTC-AAAGCCCACACAAGTCAATGGCAATCTTTTTTAAAGCCCACACAAGTCG
*
755230 ATGGCAACCCCCTTCAAAGCCCACACAAGTTG
65 ATGGCAACCCCCTTCAAAGCCCACACAAGTTA
755262 GTGGCA
1 GTGGCA
755268 TCTTTTTTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
95 5 0.06
96 71 0.83
97 10 0.12
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (96 bp):
GTGGCAACCTTCTTCAAAGCCCACACAAGTCAATGGCAATCTTTTTTAAAGCCCACACAAGTCGA
TGGCAACCCCCTTCAAAGCCCACACAAGTTA
Found at i:755276 original size:64 final size:63
Alignment explanation
Indices: 755118--755275 Score: 176
Period size: 64 Copynumber: 2.5 Consensus size: 63
755108 TTTTTTTTAG
* * * * * *
755118 AAGCCCACACAAGCTGGTGGCAACCTCTTTTAATGTCCACACAAGTTAGTGGCAACCTCTTCTA
1 AAGCCCACACAAGTTGGTGGC-ATCTTTTTTAAAGTCCACACAAGTGAGTGGCAACCCCTTCTA
*** *
755182 AAGCCCACACAAGTCAATGGCAATCTTTTTTAAAGTCCACGCAAGTCGA-TGGCAACCCCCTTC-
1 AAGCCCACACAAGTTGGTGGC-ATCTTTTTTAAAGTCCACACAAGT-GAGTGGCAA-CCCCTTCT
755245 A
63 A
755246 AAGCCCACACAAGTTGGTGGCATCTTTTTT
1 AAGCCCACACAAGTTGGTGGCATCTTTTTT
755276 TTCAAAGCCC
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
63 9 0.11
64 63 0.80
65 7 0.09
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (63 bp):
AAGCCCACACAAGTTGGTGGCATCTTTTTTAAAGTCCACACAAGTGAGTGGCAACCCCTTCTA
Found at i:755315 original size:28 final size:28
Alignment explanation
Indices: 755275--755925 Score: 515
Period size: 28 Copynumber: 22.5 Consensus size: 28
755265 GCATCTTTTT
* *
755275 TTTCAAAGCCCACGATTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
755303 TTTCAAAGCCCACAAGTCAGTGGCA-CC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
755330 TTTCCAAAGCCCACAAGTCACTAGCATCC
1 TTT-CAAAGCCCACAAGTCAGTGGCATCC
* ** *
755359 TTTCCAAGCCCACACAAGTTGGTGGCATCTTT
1 TTTCAAAG-CC-CACAAGTCAGTGGCATC--C
* *
755391 TTTCCAAAGCCCACAAGTCACTGGCAACC
1 TTT-CAAAGCCCACAAGTCAGTGGCATCC
* **
755420 -TTCTAAAGCCCTCAAGTCAGTCACA-CC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCC
* *
755447 TTTCCAAAGCCCATAAGTCAGTGGCACCC
1 TTT-CAAAGCCCACAAGTCAGTGGCATCC
* * *
755476 TTTTTAAAGCTCACAAGTCAGTGACATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
** *
755505 TTTCAAAGCCTACACAAGTTGGTGGCATCTTTTT
1 TTTCAAAGCC--CACAAGTCAGTGGCATC----C
* * *
755539 TTTCAAAGCCCACAAGTCGGTGGTATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
755567 TTTCAAAGCCCATAGGTCAGTGGCA-CTC
1 TTTCAAAGCCCACAAGTCAGTGGCATC-C
* * *
755595 TTCCAAAGCCCACGAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
755623 TTTTTAAAGCCAACAAGTCAGTGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
* ** *
755652 TTTAAAAGCCCACATAAGTTGGTGGCATCTTTTTTG
1 TTTCAAAGCCCAC--AAGTCAGTGGCATC------C
*
755688 TTTCAAAGCCCACAAGTC-GATGGCATTC
1 TTTCAAAGCCCACAAGTCAG-TGGCATCC
* *
755716 TTCCAATGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
755744 TTTCAAAGCCCACAAGTTAGTGGCAACC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
755772 -TTCTAAAGCCCACAAGTTAGTGGCACCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCC
* * * * *
755800 TTCCAAAGCCTATAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
755828 TTTCAAAAGCCCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCC
* *
755857 TTTTAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
755885 TTTTAAAGCCCACAAGGCAATGGCA-CTC
1 TTTCAAAGCCCACAAGTCAGTGGCATC-C
755913 TTTCAAAGCCCAC
1 TTTCAAAGCCCAC
755926 TGTCGTAACT
Statistics
Matches: 506, Mismatches: 82, Indels: 70
0.77 0.12 0.11
Matches are distributed among these distances:
27 13 0.03
28 302 0.60
29 79 0.16
30 42 0.08
31 13 0.03
32 20 0.04
33 5 0.01
34 20 0.04
36 12 0.02
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCATCC
Found at i:755406 original size:89 final size:86
Alignment explanation
Indices: 755278--755925 Score: 314
Period size: 85 Copynumber: 7.5 Consensus size: 86
755268 TCTTTTTTTT
* * *
755278 CAAAGCCCACGATTCAGTGGCATCC--TTTCAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCC
755341 CACAAGTCACT-AGCATCCTTTC
66 CACAAGTCACTCA-CA-CCTTTC
** * * * *
755363 C-AAGCCCACACAAGTTGGTGGCATCTTTTTTCCAAAGCCCACAAGTCACTGGCAACC-TTCTAA
1 CAAAG-CC-CACAAGTCAGTGGCACCCTTTTT-CAAAGCCCACAAGTCAGTGGC-ACCTTTCCAA
* *
755426 AGCCCTCAAGTCAGTCACACCTTTC
62 AGCCCACAAGTCACTCACACCTTTC
* * *
755451 CAAAGCCCATAAGTCAGTGGCACCCTTTTT-AAAGCTCACAAGTCAGTGACATCCTTT-CAAAGC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCCAAAGC
*** *** *
755514 CTACACAAGTTGGTGGCATCTTTTTTTT
65 C--CACAAGTCACT--CA-C-ACCTTTC
* * * * *
755542 CAAAGCCCACAAGTCGGTGGTA-TC-TTTTCAAAGCCCATAGGTCAGTGGCA-CTCTTCCAAAGC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCACCT-TTCCAAAGC
* * *
755604 CCACGAGTCAGTGGCAC-CCTTTT
65 CCACAAGTCACT--CACACCTTTC
* * * * ** *
755627 TAAAGCCAACAAGTCAGTGGCATCC--TTTAAAAGCCCACATAAGTTGGTGGCATCTTTTTTGTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCAC--AAGTCAGTGGCA-C----CT-TT
* ** *
755690 TCAAAGCCCACAAGTCGA-TGGCA-TTCTTC
58 CCAAAGCCCACAAGTC-ACTCACACCT-TTC
* * * *
755719 CAATGCCCACAAGTCAGTGGCATCC--TTTCAAAGCCCACAAGTTAGTGGCAACC-TTCTAAAGC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGC-ACCTTTCCAAAGC
* * ** *
755781 CCACAAGTTAGTGGCACCCTTC
65 CCACAAGTCACTCACACCTTTC
* * * * **
755803 CAAAGCCTATAAGTTAGTGGCACCC--TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTAAAGC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTC-AAAGCCCACAAGTCAGTGGCACCTTTCCAAAGC
* ** * *
755866 CCACAAGTCAGTGGCATCTTTT
65 CCACAAGTCACTCACACCTTTC
* * * *
755888 TAAAGCCCACAAGGCAATGGCA--CTCTTTCAAAGCCCAC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCAC
755926 TGTCGTAACT
Statistics
Matches: 440, Mismatches: 85, Indels: 77
0.73 0.14 0.13
Matches are distributed among these distances:
83 2 0.00
84 62 0.14
85 126 0.29
86 16 0.04
87 36 0.08
88 26 0.06
89 51 0.12
90 41 0.09
91 25 0.06
92 36 0.08
93 18 0.04
94 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (86 bp):
CAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCC
CACAAGTCACTCACACCTTTC
Found at i:755436 original size:117 final size:118
Alignment explanation
Indices: 755246--755466 Score: 338
Period size: 117 Copynumber: 1.9 Consensus size: 118
755236 ACCCCCTTCA
* * * * *
755246 AAGCCCACACAAGTTGGTGGCATCTTTTTTTTCAAAGCCCACGATTCAGTGGCATCCTTTCAAAG
1 AAGCCCACACAAGTTGGTGGCATCTTTTTTTCCAAAGCCCACAAGTCACTGGCAACCTTTCAAAG
**
755311 CCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTCACTAGCATCCTTTCC
66 CCCACAAGTCAGTCACACCTTTCCAAAGCCCACAAGTCACTAGCATCCTTTCC
755364 AAGCCCACACAAGTTGGTGGCATC-TTTTTTCCAAAGCCCACAAGTCACTGGCAACC-TTCTAAA
1 AAGCCCACACAAGTTGGTGGCATCTTTTTTTCCAAAGCCCACAAGTCACTGGCAACCTTTC-AAA
* *
755427 GCCCTCAAGTCAGTCACACCTTTCCAAAGCCCATAAGTCA
65 GCCCACAAGTCAGTCACACCTTTCCAAAGCCCACAAGTCA
755467 GTGGCACCCT
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
116 3 0.03
117 66 0.71
118 24 0.26
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (118 bp):
AAGCCCACACAAGTTGGTGGCATCTTTTTTTCCAAAGCCCACAAGTCACTGGCAACCTTTCAAAG
CCCACAAGTCAGTCACACCTTTCCAAAGCCCACAAGTCACTAGCATCCTTTCC
Found at i:755619 original size:147 final size:145
Alignment explanation
Indices: 755274--755925 Score: 662
Period size: 147 Copynumber: 4.5 Consensus size: 145
755264 GGCATCTTTT
* * * *
755274 TTTTCAAAGCCCACGATTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCCAAA
1 TTTTCAAAGCCCACAAGTCAGTGGCAT-CTTCCAAAGCCCACAAGTCAGTGGCACCCTTTCTAAA
* * *
755338 GCCCACAAGTCACT-AGCATCCTTTCCAAGCCCACACAAGTTGGTGGCATCTTTTTTCCAAAGCC
65 GCCCACAAGTCAGTGA-CATCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTTTTTCAAAGCC
* *
755402 CACAAGTCACTGGCAAC
129 CACAAGTCAGTGGCATC
* * ** * * *
755419 -CTTCTAAAGCCCTCAAGTCAGTCACACCTTTCCAAAGCCCATAAGTCAGTGGCACCCTTTTTAA
1 TTTTC-AAAGCCCACAAGTCAGTGGCATC-TTCCAAAGCCCACAAGTCAGTGGCACCCTTTCTAA
* *
755483 AGCTCACAAGTCAGTGACATCCTTTCAAAGCCTACACAAGTTGGTGGCATCTTTTTTTTCAAAGC
64 AGCCCACAAGTCAGTGACATCCTTTCAAAGCCCACACAAGTTGGTGGCATC-TTTTTTTCAAAGC
* *
755548 CCACAAGTCGGTGGTATC
128 CCACAAGTCAGTGGCATC
* * * *
755566 TTTTCAAAGCCCATAGGTCAGTGGCACTCTTCCAAAGCCCACGAGTCAGTGGCACCCTTTTTAAA
1 TTTTCAAAGCCCACAAGTCAGTGGCA-TCTTCCAAAGCCCACAAGTCAGTGGCACCCTTTCTAAA
* * * *
755631 GCCAACAAGTCAGTGGCATCCTTTAAAAGCCCACATAAGTTGGTGGCATCTTTTTTGTTTCAAAG
65 GCCCACAAGTCAGTGACATCCTTTCAAAGCCCACACAAGTTGGTGGCATC--TTTT-TTTCAAAG
755696 CCCACAAGTC-GATGGCAT-
127 CCCACAAGTCAG-TGGCATC
* * * * *
755714 TCTTCCAATGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCAACC-TTCTAA
1 T-TTTCAAAGCCCACAAGTCAGTGGCAT-CTTCCAAAGCCCACAAGTCAGTGGCACCCTTTCTAA
* * * * * * * **
755778 AGCCCACAAGTTAGTGGCACCCTTCCAAAG-CC-TATAAGTTAGTGGCA-C--CCTTTCAAAAGC
64 AGCCCACAAGTCAGTGACATCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTTTTTC-AAAGC
755838 CCACAAGTCAGTGGCATC
128 CCACAAGTCAGTGGCATC
* ** * * *
755856 TTTTTAAAGCCCACAAGTCAGTGGCATCTTTTTAAAGCCCACAAGGCAATGGCACTCTTTC-AAA
1 TTTTCAAAGCCCACAAGTCAGTGGCATC-TTCCAAAGCCCACAAGTCAGTGGCACCCTTTCTAAA
755920 GCCCAC
65 GCCCAC
755926 TGTCGTAACT
Statistics
Matches: 427, Mismatches: 63, Indels: 38
0.81 0.12 0.07
Matches are distributed among these distances:
140 5 0.01
141 74 0.17
142 5 0.01
144 4 0.01
145 40 0.09
146 65 0.15
147 123 0.29
148 42 0.10
149 69 0.16
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (145 bp):
TTTTCAAAGCCCACAAGTCAGTGGCATCTTCCAAAGCCCACAAGTCAGTGGCACCCTTTCTAAAG
CCCACAAGTCAGTGACATCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTTTTTCAAAGCCCA
CAAGTCAGTGGCATC
Found at i:758036 original size:22 final size:22
Alignment explanation
Indices: 758008--758118 Score: 79
Period size: 22 Copynumber: 5.1 Consensus size: 22
757998 ACTAATTTTT
758008 TTCCTCCTACATTGCTACTGCC
1 TTCCTCCTACATTGCTACTGCC
*
758030 TTCCTCCTACATTGTTGCTACT-CG
1 TTCCTCCTACA---TTGCTACTGCC
* * *
758054 ATCCT--TGCAGCT-CTA-TGCC
1 TTCCTCCTACA-TTGCTACTGCC
* *
758073 TTCCTCCTACATTGTTGCTGCC
1 TTCCTCCTACATTGCTACTGCC
**
758095 TTCCTCCTACATTATTACTGCC
1 TTCCTCCTACATTGCTACTGCC
758117 TT
1 TT
758119 TTTTTGTTCG
Statistics
Matches: 69, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.01
19 8 0.12
20 3 0.04
21 4 0.06
22 40 0.58
24 5 0.07
25 8 0.12
ACGTcount: A:0.14, C:0.36, G:0.11, T:0.40
Consensus pattern (22 bp):
TTCCTCCTACATTGCTACTGCC
Found at i:758770 original size:33 final size:33
Alignment explanation
Indices: 758711--758777 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
758701 CTAAGTCAAA
*
758711 TGTATCGATACATGAGACAATATATCGATACAT
1 TGTATCGATACATAAGACAATATATCGATACAT
* *
758744 TGTATCGATACATAAAGA-ATTGTATCGATACAT
1 TGTATCGATACAT-AAGACAATATATCGATACAT
758777 T
1 T
758778 ATGCCCTACG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 27 0.90
34 3 0.10
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (33 bp):
TGTATCGATACATAAGACAATATATCGATACAT
Found at i:759617 original size:17 final size:18
Alignment explanation
Indices: 759584--759617 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
759574 TTTCAGCTTG
*
759584 TTGCTTTGCTGTTCCACA
1 TTGCTTTGCTCTTCCACA
759602 TTGCTTTG-TCTTCCAC
1 TTGCTTTGCTCTTCCAC
759618 TTTCTTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.29, G:0.15, T:0.47
Consensus pattern (18 bp):
TTGCTTTGCTCTTCCACA
Found at i:760374 original size:43 final size:41
Alignment explanation
Indices: 760293--760375 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 41
760283 CCAATTTCAT
* *
760293 GCATGAATGCATGCATTGCCACCTAATCGATTTAGGTGGCA
1 GCATGAATGCATGCAATGCCACCTAATCGAATTAGGTGGCA
*
760334 GCATGCAATGCAATGCAATGCCACCTAAGTC-AATTCGGTGGC
1 GCATG-AATGC-ATGCAATGCCACCTAA-TCGAATTAGGTGGC
760376 TGCAAATCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 5 0.14
42 5 0.14
43 24 0.67
44 2 0.06
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (41 bp):
GCATGAATGCATGCAATGCCACCTAATCGAATTAGGTGGCA
Found at i:760496 original size:17 final size:16
Alignment explanation
Indices: 760442--760498 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
760432 TTAATTGATC
760442 TTTTTATTATTATTACT
1 TTTTTATTATTATTA-T
*
760459 ATTTTT-TTATTTTTGA-
1 -TTTTTATTATTATT-AT
760475 TTTTTACTTATTATTAT
1 TTTTTA-TTATTATTAT
760492 TTTTTAT
1 TTTTTAT
760499 ATTGAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
15 5 0.15
16 2 0.06
17 20 0.61
18 6 0.18
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTTATTATTATTAT
Found at i:761089 original size:42 final size:42
Alignment explanation
Indices: 761034--762180 Score: 248
Period size: 42 Copynumber: 27.4 Consensus size: 42
761024 GGGTAGGAAA
* *
761034 AGTCTCCAAGGTCAAAGCCATCAGGTAGACCTTAGATGAGGC
1 AGTCTCCAAGGTCAAAGCCATCAGGCAGACCTTAGATAAGGC
* * * *
761076 AGTCTCCAGGGTCAAAGTCGAT-AGGCAGA-CTAAGAGT-AGGAA
1 AGTCTCCAAGGTCAAAG-CCATCAGGCAGACCTTAGA-TAAGG-C
* * * * *
761118 AGTCTCCAGGGTCAAAACCGA-CAGGCAAACTTTAGATGAGGC
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
* * * * * *
761160 AGTCTCTATGGTCAAAGCCGAT-GGGCAAACTTTATATAAGGC
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
** * * *
761202 AGTCTCCAAGGTCAAAGTTGA-CAGACAGACTTTATATAAGGC
1 AGTCTCCAAGGTCAAAG-CCATCAGGCAGACCTTAGATAAGGC
*
761244 AGTCT--AAGGTCAAAGCCAACAGGCAGA-CTTAGTATAAGGC
1 AGTCTCCAAGGTCAAAGCCATCAGGCAGACCTTAG-ATAAGGC
* * * *
761284 AGTCTCCAGGGTCAAAGCCGA-CAGGCAGA-CTGAAGGGT-AGGAA
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCT-TA-GATAAGG-C
* * * * *
761327 AGTCTCCAGGGTCAAAGCTGAT-AGGCAGA-CTAAAGGGT-AGGAA
1 AGTCTCCAAGGTCAAAGC-CATCAGGCAGACCT-TA-GATAAGG-C
* * * * *
761370 AGTCTCCAAGGTTAAAGCCAAT-AGGTAGACTTTAGAGAAGGT
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
* * * * **
761412 AGTCTCCAAGGTCAAAGCCAACAGGTAGA-CTGAAGGTTAAGAA
1 AGTCTCCAAGGTCAAAGCCATCAGGCAGACCT-TA-GATAAGGC
* * * * * **
761455 AGTCTCTAAGGTCAAAGTCGA-CATGTAGA-CTTAAGGGTAA-AA
1 AGTCTCCAAGGTCAAAG-CCATCAGGCAGACCTT-A-GATAAGGC
* ** * * *
761497 AGTCTCTAAGGTCAAAGCCGA-CAAACAGACTTTAGATGAGGT
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
* * *
761539 AGTCTCCAAGGTCAAAGCCGA-CAGGTAGA-CTTCAGATGAGGT
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTT-AGATAAGGC
**** * * *
761581 AGTCTCCAAGGTCAAAGTTGGCAAGCA-AAC-T-GA-AGGGGC
1 AGTCTCCAAGGTCAAAGCCATCAGGCAGACCTTAGATA-AGGC
* * * * **
761620 AGTCTCTAAGGTCAAAGCCGA-CAAGCAGA-CTGAAAGT-AGAAA
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGA-TAAG-GC
* * * * *
761662 AATCTCCAAGGTCAAAACCGGT-AGGCAGACTTTAGATGAGGC
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
** * * * *
761704 AGTCTTTAAGGTCAAAGCTGAT-AGGCAGA-CTGAAGGGT-AGGAA
1 AGTCTCCAAGGTCAAAGC-CATCAGGCAGACCT-TA-GATAAGG-C
** * * *
761747 AGTCTCCGGGGTCAAAGCCGA-CAGGTAGA-CTTAGGGT-AGGAA
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTA-GATAAGG-C
* * * *
761789 AGTCTCCAAGGTC-AAGCTGAT-AGGCAGACTTTAGATGAGGT
1 AGTCTCCAAGGTCAAAGC-CATCAGGCAGACCTTAGATAAGGC
* * * * *
761830 AGTCTCTAAGGTCAAAGCCGAT-AGGCA-AACTGAAGGT-AGGAA
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCT-TAGATAAGG-C
* * ** * *
761872 AGTCTCTAGGGTCAAAGTTGAT-AGGCAAACTTTAGATAAGGC
1 AGTCTCCAAGGTCAAAG-CCATCAGGCAGACCTTAGATAAGGC
* * *
761914 AGTCTCCAAGGTCAAAGCC--CA--CTAGA-CTGAAGGGT-AGGAA
1 AGTCTCCAAGGTCAAAGCCATCAGGC-AGACCT-TA-GATAAGG-C
* * * *
761954 AGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTTAGATAAGAC
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
* * * **
761996 AGCCTCCAAGGTCAAAGCCGAT-AGGGAGA-CTAAGGATAAGAA
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTA-GATAAGGC
* ** * *
762038 AGTCTCCAAAGTCAAAGTTGA-CAGGCAGACTTTAGATGAGGC
1 AGTCTCCAAGGTCAAAG-CCATCAGGCAGACCTTAGATAAGGC
* * *
762080 AGTCTCCAAGGTCAAAGCCGA-CAGGCAGA-CTAAGGGT-AGGAA
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTA-GATAAGG-C
* * * * *
762122 AGTCTCCAGGGTCAAAGCCGAT-AGGCAAACTTTATATAAGGT
1 AGTCTCCAAGGTCAAAGCC-ATCAGGCAGACCTTAGATAAGGC
* *
762164 AGTCTCTAGGGTCAAAG
1 AGTCTCCAAGGTCAAAG
762181 TCAACAAGCA
Statistics
Matches: 836, Mismatches: 185, Indels: 168
0.70 0.16 0.14
Matches are distributed among these distances:
38 2 0.00
39 37 0.04
40 50 0.06
41 59 0.07
42 517 0.62
43 165 0.20
44 6 0.01
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (42 bp):
AGTCTCCAAGGTCAAAGCCATCAGGCAGACCTTAGATAAGGC
Found at i:761161 original size:84 final size:84
Alignment explanation
Indices: 760992--762324 Score: 876
Period size: 84 Copynumber: 15.9 Consensus size: 84
760982 AAGTGAAAAT
* * * *
760992 GTCTCC-AGTGTCAAAGCTGACAAGCAGACTGAGGGTAGGAAAAGTCTCCAAGGTCAAAGCC-AT
1 GTCTCCAAG-GTCAAAGCCGACAGGCAGACTAAGAGTAGG-AAAGTCTCCAAGGTCAAAGCCGA-
* *
761055 CAGGTAGACCTTAGATGAGGCA
63 CAGGCAGACTTTAGATGAGGCA
* * * * *
761077 GTCTCCAGGGTCAAAGTCGATAGGCAGACTAAGAGTAGGAAAGTCTCCAGGGTCAAAACCGACAG
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAG
*
761142 GCAAACTTTAGATGAGGCA
66 GCAGACTTTAGATGAGGCA
* * ** * * * * **
761161 GTCTCTATGGTCAAAGCCGATGGGCAAACTTTATA-TAAGG-CAGTCTCCAAGGTCAAAGTTGAC
1 GTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAAGAGT-AGGAAAGTCTCCAAGGTCAAAGCCGAC
* * *
761224 AGACAGACTTTATATAAGGCA
64 AGGCAGACTTTAGATGAGGCA
* * * *
761245 GTCT--AAGGTCAAAGCCAACAGGCAGACTTAGTA-TAAGG-CAGTCTCCAGGGTCAAAGCCGAC
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAG-AGT-AGGAAAGTCTCCAAGGTCAAAGCCGAC
** * *
761306 AGGCAGACTGAAG-GGTAGGAAA
64 AGGCAGACTTTAGATG-AGG-CA
* * * * * * *
761328 GTCTCCAGGGTCAAAGCTGATAGGCAGACTAAAGGGTAGGAAAGTCTCCAAGGTTAAAGCCAATA
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* *
761393 GGTAGACTTTAGA-GAAGGTA
65 GGCAGACTTTAGATG-AGGCA
* * * * *
761413 GTCTCCAAGGTCAAAGCCAACAGGTAGACTGAAG-GTTAAGAAAGTCTCTAAGGTCAAAGTCGAC
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGAG-TAGGAAAGTCTCCAAGGTCAAAGCCGAC
* * * * ***
761477 ATGTAGACTTAAG-GGTAAAAA
64 AGGCAGACTTTAGATG-AGGCA
* ** * *
761498 GTCTCTAAGGTCAAAGCCGACAAACAGACTTTAGA-TGAGG-TAGTCTCCAAGGTCAAAGCCGAC
1 GTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAAGAGT-AGGAAAGTCTCCAAGGTCAAAGCCGAC
* * *
761561 AGGTAGACTTCAGATGAGGTA
64 AGGCAGACTTTAGATGAGGCA
** * * * * *
761582 GTCTCCAAGGTCAAAGTTGGCAAGCAAACTGAAG-G--GG-CAGTCTCTAAGGTCAAAGCCGACA
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* * * **
761643 AGCAGAC-TGA-AAGTAGAAAA
65 GGCAGACTTTAGATG-AG-GCA
* * ** * * ** * *
761663 ATCTCCAAGGTCAAAACCGGTAGGCAGACTTTAGA-TGAGG-CAGTCTTTAAGGTCAAAGCTGAT
1 GTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAAGAGT-AGGAAAGTCTCCAAGGTCAAAGCCGAC
** * *
761726 AGGCAGACTGAAG-GGTAGGAAA
64 AGGCAGACTTTAGATG-AGG-CA
** * * * * *
761748 GTCTCCGGGGTCAAAGCCGACAGGTAGACTTAGGGTAGGAAAGTCTCCAAGGTC-AAGCTGATAG
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAG
*
761812 GCAGACTTTAGATGAGGTA
66 GCAGACTTTAGATGAGGCA
* * * * * ** *
761831 GTCTCTAAGGTCAAAGCCGATAGGCAAACTGAAG-GTAGGAAAGTCTCTAGGGTCAAAGTTGATA
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* *
761895 GGCAAACTTTAGATAAGGCA
65 GGCAGACTTTAGATGAGGCA
* * *
761915 GTCTCCAAGGTCAAAGCC--CA--CTAGACTGAAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGAC
1 GTCTCCAAGGTCAAAGCCGACAGGC-AGACT-AAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGAC
* *
761976 AGGCAGACTTTAGATAAGACA
64 AGGCAGACTTTAGATGAGGCA
* * * * * **
761997 GCCTCCAAGGTCAAAGCCGATAGGGAGACTAAG-GATAAGAAAGTCTCCAAAGTCAAAGTTGACA
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGAG-TAGGAAAGTCTCCAAGGTCAAAGCCGACA
762061 GGCAGACTTTAGATGAGGCA
65 GGCAGACTTTAGATGAGGCA
* * *
762081 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAG
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAG
* * * *
762146 GCAAACTTTATATAAGGTA
66 GCAGACTTTAGATGAGGCA
* * * * * * * * * * * *
762165 GTCTCTAGGGTCAAAGTCAACAAGCAGACTGAGGGTTGGAAA-TCTCTAGGGTCAAAGCTGATAG
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAG
*
762229 GCAGACTTTAGATGAGGTA
66 GCAGACTTTAGATGAGGCA
* * * * * * *
762248 GTCTCCAAGGTTAAAGTCAACAAGCAGACTGAA-AGGTAGGAAAGTCTCCAGGGTTAAAGCCGAT
1 GTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGA-GTAGGAAAGTCTCCAAGGTCAAAGCCGAC
762312 AGGCAGACTTTAG
64 AGGCAGACTTTAG
762325 GGTAGGAAAA
Statistics
Matches: 995, Mismatches: 206, Indels: 94
0.77 0.16 0.07
Matches are distributed among these distances:
79 2 0.00
80 5 0.01
81 65 0.07
82 120 0.12
83 113 0.11
84 421 0.42
85 232 0.23
86 37 0.04
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (84 bp):
GTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAG
GCAGACTTTAGATGAGGCA
Found at i:761668 original size:123 final size:125
Alignment explanation
Indices: 761001--762142 Score: 448
Period size: 126 Copynumber: 9.1 Consensus size: 125
760991 TGTCTCCAGT
* ** * *
761001 GTCAAAGCTGACAAGCAGACTGAGGGTAGGAAAAGTCTCCAAGGTCAAAGCC-ATCAGGTAGACC
1 GTCAAAGCCGACAAGCAGACT-AAAGTA-GAAAAGTCTCCAAGGTCAAAGCCGAT-AGGCAGACT
* * * * * * * * *
761065 TTAGATGAGGCAGTCTCCAGGGTCAAAG-TCGATAGGCAGACT-AAGAGTAGGAAAGTCTCCAGG
63 TTAGATGAGGTAGTCTCTAAGGTCAAAGCT-GACAAGCAAACTGAAG-GGAGGAAAGTCTCTAAG
* * * ** ** * * * *
761128 GTCAAAACCGACAGGCAAACTTTAG-ATGAGGCAGTCTCTATGGTCAAAGCCGATGGGCAAACTT
1 GTCAAAGCCGACAAGCAGACTAAAGTA-GA-AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT
* * * * * * * ** *
761192 TATATAAGGCAGTCTCCAAGGTCAAAGTTGAC-AGACAGACTTTATA-TAAGG-CAG--TCTAAG
64 TAGATGAGGTAGTCTCTAAGGTCAAAGCTGACAAG-CAAAC-TGA-AGGGAGGAAAGTCTCTAAG
* * * * * * * *
761252 GTCAAAGCCAACAGGCAGACT-TAGTATAAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTG
1 GTCAAAGCCGACAAGCAGACTAAAGTAGAA--AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT
* * * * * * * * * *
761316 AAG-GGTAGGAAAGTCTCCAGGGTCAAAGCTGATAGGCAGACTAAAGGGTAGGAAAGTCTCCAAG
64 TAGATG-AGG-TAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGG-AGGAAAGTCTCTAAG
* * * * * ** * * * * *
761380 GTTAAAGCCAATAGGTAGACTTTAG-AGAAGGTAGTCTCCAAGGTCAAAGCCAACAGGTAGACTG
1 GTCAAAGCCGACAAGCAGACTAAAGTAGAA--AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT
* * * ** * * * * *
761444 AAGGTTAAGAAAGTCTCTAAGGTCAAAG-TCGACATGTAGACTTAAGGGTA-AAAAGTCTCTAAG
64 TA-GATGAGGTAGTCTCTAAGGTCAAAGCT-GACAAGCAAACTGAAGGG-AGGAAAGTCTCTAAG
* ** ** * *
761507 GTCAAAGCCGACAAACAGACTTTAG-ATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGTAGACTT
1 GTCAAAGCCGACAAGCAGACTAAAGTA-GA-AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT
* * * * *
761571 CAGATGAGGTAGTCTCCAAGGTCAAAGTTGGCAAGCAAACTGAA-GG-GG-CAGTCTCTAAG
64 TAGATGAGGTAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGGAGGAAAGTCTCTAAG
* * *
761630 GTCAAAGCCGACAAGCAGACTGAAAGTAGAAAAATCTCCAAGGTCAAAACCGGTAGGCAGACTTT
1 GTCAAAGCCGACAAGCAGACT-AAAGTAGAAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTT
* * * * * ***
761695 AGATGAGGCAGTCTTTAAGGTCAAAGCTGATAGGCAGACTGAAGGGTAGGAAAGTCTCCGGG
65 AGATGAGGTAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGG-AGGAAAGTCTCTAAG
* * ** * *
761757 GTCAAAGCCGACAGGTAGACTTAGGGTAGGAAAGTCTCCAAGGTC-AAGCTGATAGGCAGACTTT
1 GTCAAAGCCGACAAGCAGAC-TAAAGTAGAAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTT
* * * * *
761821 AGATGAGGTAGTCTCTAAGGTCAAAGCCGATAGGCAAACTGAAGGTAGGAAAGTCTCTAGG
65 AGATGAGGTAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGGAGGAAAGTCTCTAAG
** * * * ** ** *
761882 GTCAAAGTTGATAGGCAAACTTTAGATA-AGGCAGTCTCCAAGGTCAAAGCC--CA--CTAGACT
1 GTCAAAGCCGACAAGCAGACTAAAG-TAGA-AAAGTCTCCAAGGTCAAAGCCGATAGGC-AGACT
** * * * * * * ** ** * * * *
761942 GAAG-GGTAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGATAAGACAGCCTCCAAG
63 TTAGATG-AGG-TAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGGAGGAAAGTCTCTAAG
* * * * * ** *
762006 GTCAAAGCCGATAGGGAGACTAAGGATA-AGAAAGTCTCCAAAGTCAAAGTTGACAGGCAGACTT
1 GTCAAAGCCGACAAGCAGACTAAAG-TAGA-AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT
* * * * * * *
762070 TAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGGGTAGGAAAGTCTCCAGG
64 TAGATGAGGTAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGG-AGGAAAGTCTCTAAG
762132 GTCAAAGCCGA
1 GTCAAAGCCGA
762143 TAGGCAAACT
Statistics
Matches: 786, Mismatches: 184, Indels: 91
0.74 0.17 0.09
Matches are distributed among these distances:
122 2 0.00
123 107 0.14
124 145 0.18
125 79 0.10
126 206 0.26
127 143 0.18
128 97 0.12
129 7 0.01
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (125 bp):
GTCAAAGCCGACAAGCAGACTAAAGTAGAAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTTA
GATGAGGTAGTCTCTAAGGTCAAAGCTGACAAGCAAACTGAAGGGAGGAAAGTCTCTAAG
Found at i:761736 original size:292 final size:289
Alignment explanation
Indices: 761202--762181 Score: 874
Period size: 292 Copynumber: 3.3 Consensus size: 289
761192 TATATAAGGC
* * * * *
761202 AGTCTCCAAGGTCAAAGTTGACAGACAGACTTTATATAAGGCAGTCT-AAGGTCAAAGCCAACAG
1 AGTCTCCAAGGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTCTCAAGGTCAAAGCCGACAG
* ** * *
761266 GCAGACTTAGTATAAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAAGGGTAGGAAAGTC
66 GCAGACTTAG-AT-AGGAAGTCTCCAGGGTCAAAGTTGACAGGCAAACTGAA-GG--GG-CAGTC
* * * * * *
761331 TCCAGGGTCAAAGCTGATAGGCAGACT-AAAGGGTAGGAAAGTCTCCAAGGTTAAAGCCAATAGG
125 TCCAAGGTCAAAGCCGACAAGCAGACTGAAA--GTAGGAAAGTCTCCAAGGTCAAAGCCGATAGG
* * * * * *
761395 TAGACTTTAGA-GAAGGTAGTCTCCAAGGTCAAAGCCAACAGGTAGACTGAAGGTTAAGAAAGTC
188 CAGACTTTAGATG-AGGCAGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAAGGATAAGAAAGTC
* *
761459 TCTAAGGTCAAAGTCGACATGTAGACTTAAGGGTA-AAA
252 TCCAAGGTCAAAGTCGACAGGTAGACTT-AGGGTAGAAA
* * *
761497 AGTCTCTAAGGTCAAAGCCGACAAACAGACTTTAGATGAGGTAGTCTCCAAGGTCAAAGCCGACA
1 AGTCTCCAAGGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTCT-CAAGGTCAAAGCCGACA
* * * * * *
761562 GGTAGACTTCAGATGAGGTAGTCTCCAAGGTCAAAGTTGGCAAGCAAACTGAAGGGGCAGTCTCT
65 GGCAGACTT-AGAT-AGGAAGTCTCCAGGGTCAAAGTTGACAGGCAAACTGAAGGGGCAGTCTCC
* * * *
761627 AAGGTCAAAGCCGACAAGCAGACTGAAAGTAGAAAAATCTCCAAGGTCAAAACCGGTAGGCAGAC
128 AAGGTCAAAGCCGACAAGCAGACTGAAAGTAGGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGAC
** * * * **
761692 TTTAGATGAGGCAGTCTTTAAGGTCAAAGCTGATAGGCAGACTGAAGGGTAGGAAAGTCTCCGGG
193 TTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAAGGATAAGAAAGTCTCCAAG
* *
761757 GTCAAAGCCGACAGGTAGACTTAGGGTAGGAA
258 GTCAAAGTCGACAGGTAGACTTAGGGTAGAAA
* * *
761789 AGTCTCCAAGGTC-AAGCTGATAGGCAGACTTTAGATGAGGTAGTCTCTAAGGTCAAAGCCGATA
1 AGTCTCCAAGGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTCTC-AAGGTCAAAGCCGACA
* * * * * *
761853 GGCAAACTGAAGGTAGGAAAGTCTCTAGGGTCAAAGTTGATAGGCAAACTTTAGATA-AGGCAGT
65 GGCAGACT-TAGATAGG-AAGTCTCCAGGGTCAAAGTTGACAGGCAAAC--T-GA-AGGGGCAGT
* * * *
761917 CTCCAAGGTCAAAGCC--C-A-CTAGACTGAAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGACAG
124 CTCCAAGGTCAAAGCCGACAAGC-AGACTGAA-AGTAGGAAAGTCTCCAAGGTCAAAGCCGATAG
* * * *
761978 GCAGACTTTAGATAAGACAGCCTCCAAGGTCAAAGCCGATAGGGAGACT-AAGGATAAGAAAGTC
187 GCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAAGGATAAGAAAGTC
* * * * **
762042 TCCAAAGTCAAAGTTGACAGGCAGACTTTA-GAT-GAGGC
252 TCCAAGGTCAAAGTCGACAGGTAGAC-TTAGGGTAGA-AA
* * * * * *
762080 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAAG-GGTAGGAAAGTCTCCAGGGTCAAAGCCGA
1 AGTCTCCAAGGTCAAAGCTGACAGACAGACTTTAGATG-AGG-TAGTCT-CAAGGTCAAAGCCGA
* * * * *
762143 TAGGCAAACTTTATATAAGGTAGTCTCTAGGGTCAAAGT
63 CAGGCAGAC-TTAGAT-AGGAAGTCTCCAGGGTCAAAGT
762182 CAACAAGCAG
Statistics
Matches: 562, Mismatches: 100, Indels: 49
0.79 0.14 0.07
Matches are distributed among these distances:
290 7 0.01
291 147 0.26
292 246 0.44
293 33 0.06
294 28 0.05
295 41 0.07
296 2 0.00
297 56 0.10
298 2 0.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (289 bp):
AGTCTCCAAGGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTCTCAAGGTCAAAGCCGACAG
GCAGACTTAGATAGGAAGTCTCCAGGGTCAAAGTTGACAGGCAAACTGAAGGGGCAGTCTCCAAG
GTCAAAGCCGACAAGCAGACTGAAAGTAGGAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTT
AGATGAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAAGGATAAGAAAGTCTCCAAGGTC
AAAGTCGACAGGTAGACTTAGGGTAGAAA
Found at i:761969 original size:250 final size:251
Alignment explanation
Indices: 761032--762324 Score: 789
Period size: 250 Copynumber: 5.1 Consensus size: 251
761022 GAGGGTAGGA
* * * * * *
761032 AAAGTCTCCAAGGTCAAAGC-CATCAGGTAGACCTTAGATGAGGCAGTCTCCAGGGTCAAAGTCG
1 AAAGTCTCCAAAGTCAAAGCTGA-CAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCG
* * * * * *
761096 ATAGGCAGACTAAGAGTAGGAAAGTCTCCAGGGTCAAAACCGACAGGCAAACTTTAGATGAGGCA
65 ACAGGCAAACTAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTAGATAAGGCA
* * * *** * * ** * * * * *
761161 GTCTCTATGGTCAAAGCCGATGGGCAAACTTTA-TATAAGG-CAGTCTCCAAGGTCAAAGTTGAC
130 GTCTCCAAGGTCAAAGTC-ACAAGCAGAC-TGAGGGT-AGGAAAGTCTCTAGGGTCAAAGCTGAT
* ** * ** * * * * *
761224 AGACAGACTTTATATAAGGCAG--TCTAAGGTCAAAGCCAACAGGCAGACTTAGTATAAG
192 AGGCAGACTGAAGATAAGAAAGCCTCCAAGGTCAAAGCCGACAGGGAGACTAAGGATAAG
** ** * ** * * * *
761282 GCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAAG-GGTAGGAAAGTCTCCAGGGTCAAAGCT
1 AAAGTCTCCAAAGTCAAAGCTGACAGGCAGACTTTAGATG-AGG-CAGTCTCCAAGGTCAAAGCC
* * * * * * * *
761346 GATAGGCAGACTAAAGGGTAGGAAAGTCTCCAAGGTTAAAGCCAATAGGTAGACTTTAGAGAAGG
64 GACAGGCAAACT-AAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTAGATAAGG
* * * * * * *
761411 TAGTCTCCAAGGTCAAAGCCAACAGGTAGACTGAAGGTTAAGAAAGTCTCTAAGGTCAAAG-TCG
128 CAGTCTCCAAGGTCAAAGTC-ACAAGCAGACTG-AGGGTAGGAAAGTCTCTAGGGTCAAAGCT-G
* * * * * * * *** * *
761475 ACATGTAGACTTAAGGGTAA-AAAGTCTCTAAGGTCAAAGCCGACAAACAGACTTTA-GATGAG
190 ATAGGCAGACTGAA-GATAAGAAAGCCTCCAAGGTCAAAGCCGACAGGGAGAC-TAAGGATAAG
** * * * * * ** *
761537 GTAGTCTCCAAGGTCAAAGCCGACAGGTAGACTTCAGATGAGGTAGTCTCCAAGGTCAAAGTTGG
1 AAAGTCTCCAAAGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * * * * * * * * *
761602 CAAGCAAACTGAA-GG--GG-CAGTCTCTAAGGTCAAAGCCGACAAGCAGAC-TGAAAGT-AGAA
66 CAGGCAAACT-AAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTAGA-TAAG-G
* * ** ** * * * * * *
761661 AAATCTCCAAGGTCAAAACCGGTAGGCAGACTTTA-GATGAGG-CAGTCTTTAAGGTCAAAGCTG
128 CAGTCTCCAAGGTCAAAGTC-ACAAGCAGAC-TGAGGGT-AGGAAAGTCTCTAGGGTCAAAGCTG
* * * ** * * * *
761724 ATAGGCAGACTGAAGGGTAGGAAAGTCTCCGGGGTCAAAGCCGACAGGTAGACTTAGGGTAGG
190 ATAGGCAGACTGAA-GATAAGAAAGCCTCCAAGGTCAAAGCCGACAGGGAGACTAAGGATAAG
* * * *
761787 AAAGTCTCCAAGGTC-AAGCTGATAGGCAGACTTTAGATGAGGTAGTCTCTAAGGTCAAAGCCGA
1 AAAGTCTCCAAAGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * **
761851 TAGGCAAACTGAA-GGTAGGAAAGTCTCTAGGGTCAAAGTTGATAGGCAAACTTTAGATAAGGCA
66 CAGGCAAACT-AAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTAGATAAGGCA
* * *
761915 GTCTCCAAGGTCAAAG-C-CCA-CTAGACTGAAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGACA
130 GTCTCCAAGGTCAAAGTCACAAGC-AGACTG-AGGGTAGGAAAGTCTCTAGGGTCAAAGCTGATA
** * *
761977 GGCAGACTTTAGATAAGACAGCCTCCAAGGTCAAAGCCGATAGGGAGACTAAGGATAAG
193 GGCAGACTGAAGATAAGAAAGCCTCCAAGGTCAAAGCCGACAGGGAGACTAAGGATAAG
*
762036 AAAGTCTCCAAAGTCAAAGTTGACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
1 AAAGTCTCCAAAGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * *
762101 CAGGCAGACTAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTATATAAGGTAG
66 CAGGCAAACTAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTAGATAAGGCAG
* * *
762166 TCTCTAGGGTCAAAGTCAACAAGCAGACTGAGGGTTGGAAA-TCTCTAGGGTCAAAGCTGATAGG
131 TCTCCAAGGTCAAAGTC-ACAAGCAGACTGAGGGTAGGAAAGTCTCTAGGGTCAAAGCTGATAGG
** * ** * * * * * * *
762230 CAGACTTTAGATGAGGTAGTCTCCAAGGTTAAAGTCAACAAGCAGACTGAAAGG-TAGG
195 CAGACTGAAGATAAGAAAGCCTCCAAGGTCAAAGCCGACAGGGAGACT--AAGGATAAG
** * * *
762288 AAAGTCTCCAGGGTTAAAGCCGATAGGCAGACTTTAG
1 AAAGTCTCCAAAGTCAAAGCTGACAGGCAGACTTTAG
762325 GGTAGGAAAA
Statistics
Matches: 823, Mismatches: 183, Indels: 72
0.76 0.17 0.07
Matches are distributed among these distances:
248 2 0.00
249 158 0.19
250 267 0.32
251 97 0.12
252 153 0.19
253 49 0.06
254 31 0.04
255 62 0.08
256 4 0.00
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (251 bp):
AAAGTCTCCAAAGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
CAGGCAAACTAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTTTAGATAAGGCAG
TCTCCAAGGTCAAAGTCACAAGCAGACTGAGGGTAGGAAAGTCTCTAGGGTCAAAGCTGATAGGC
AGACTGAAGATAAGAAAGCCTCCAAGGTCAAAGCCGACAGGGAGACTAAGGATAAG
Found at i:762365 original size:128 final size:125
Alignment explanation
Indices: 762188--762417 Score: 316
Period size: 128 Copynumber: 1.8 Consensus size: 125
762178 AAGTCAACAA
* ** * *
762188 GCAGACTGAGGGTTGGAAATCTCTAGGGTCAAAGCTGATAGGCAGACTTTAGATGAGGTAGTCTC
1 GCAGACTGAGGGTAGGAAATCTCTAAAGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTCTC
*
762253 CAAGGTTAAAGTCAACAAGCAGACTGAAAGGTAGGAAAGTCTCCAGGGTTAAAGCCGATAG
66 CAAGGTCAAAGTCAACAAGCAGACTG-AAGGTAGGAAAGTCTCCAGGGTTAAAGCCGATAG
* *
762314 GCAGACTTTAGGGTAGGAAAATCTCTAAAGTCAAAGCTGACAGACATACTTTAGATGAGGTAGTC
1 GCAGAC-TGAGGGTAGG-AAATCTCTAAAGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTC
* * * **
762379 TCGAGGGTCAAATTTGACAAGCAGACTGAAGGTAGGAAA
64 TCCAAGGTCAAAGTCAACAAGCAGACTGAAGGTAGGAAA
762418 ATCTTTAGGG
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
126 6 0.07
127 19 0.21
128 64 0.72
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (125 bp):
GCAGACTGAGGGTAGGAAATCTCTAAAGTCAAAGCTGACAGACAGACTTTAGATGAGGTAGTCTC
CAAGGTCAAAGTCAACAAGCAGACTGAAGGTAGGAAAGTCTCCAGGGTTAAAGCCGATAG
Found at i:762379 original size:85 final size:83
Alignment explanation
Indices: 762290--762480 Score: 193
Period size: 83 Copynumber: 2.3 Consensus size: 83
762280 AAGGTAGGAA
* * * * *
762290 AGTCTCCAGGGTTAAAGCCGATAGGCAGACTTTAGGGTAGGAAAATCTCTAAAGTCAAAGCTGAC
1 AGTCTCCAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAGGAAAATCTCTAAAGTCAAAGCTGAC
*
762355 AGACATACTTTAGATGAGGT
65 -GACAGACTTTAGATGAGGT
* *** * ** *
762375 AGTCTCGAGGGTCAAATTTGACAAGCAGACTGAAGGTAGGAAAATCTTTAGGGTCAAAGCTGGCG
1 AGTCTCCAGGGTCAAAGCCGACAAGCAGACTGAAGGTAGGAAAATCTCTAAAGTCAAAGCTGACG
* *
762440 ACAGACTTTAGATAAGGC
66 ACAGACTTTAGATGAGGT
* * *
762458 AATCTCTAAGGTCAAAGCCGACA
1 AGTCTCCAGGGTCAAAGCCGACA
762481 GGTACGCTGA
Statistics
Matches: 84, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
83 33 0.39
84 28 0.33
85 23 0.27
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (83 bp):
AGTCTCCAGGGTCAAAGCCGACAAGCAGACTGAAGGTAGGAAAATCTCTAAAGTCAAAGCTGACG
ACAGACTTTAGATGAGGT
Found at i:762498 original size:211 final size:210
Alignment explanation
Indices: 762080--762503 Score: 501
Period size: 211 Copynumber: 2.0 Consensus size: 210
762070 TAGATGAGGC
* ** *
762080 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAAAGTCTCCAGGGTCAAAGCCGATA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAAAATCTCCAAAGTCAAAGCCGACA
* * * * *
762145 GGCAAACTTTATATAAGGTAGTCTCTAGGGTCAAAGTCAACAAGCAGACTGAGGGTTGGAAATCT
66 GACAAACTTTAGATAAGGTAGTCTCGAGGGTCAAAGTCAACAAGCAGACTGAAGGTAGGAAATCT
* * * * * * *
762210 CTAGGGTCAAAGCTGATAGGCAGACTTTAGATGAGGTAGTCTCCAAGGTTAAAGTCAACAAGCAG
131 CTAGGGTCAAAGCTGAGAGACAGACTTTAGATAAGGCAATCTCCAAGGTCAAAGCCAACAAGCAG
762275 ACTGAAAGGTAGGAA
196 ACTGAAAGGTAGGAA
* * * * * *
762290 AGTCTCCAGGGTTAAAGCCGATAGGCAGACTTTAGGGTAGGAAAATCTCTAAAGTCAAAGCTGAC
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAAGGGTAGGAAAATCTCCAAAGTCAAAGCCGAC
* * * **
762355 AGACATACTTTAGATGAGGTAGTCTCGAGGGTCAAATTTGACAAGCAGACTGAAGGTAGGAAAAT
65 AGACAAACTTTAGATAAGGTAGTCTCGAGGGTCAAAGTCAACAAGCAGACTGAAGGTAGG-AAAT
* * * * * *
762420 CTTTAGGGTCAAAGCTG-GCGACAGACTTTAGATAAGGCAATCTCTAAGGTCAAAGCCGACAGGT
129 CTCTAGGGTCAAAGCTGAGAGACAGACTTTAGATAAGGCAATCTCCAAGGTCAAAGCCAACAAGC
*
762484 ACG-CTGAGAGGTAGGAA
194 A-GACTGAAAGGTAGGAA
762501 AGT
1 AGT
762504 TCATATAGTT
Statistics
Matches: 177, Mismatches: 34, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
210 27 0.15
211 129 0.73
212 21 0.12
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (210 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAAAATCTCCAAAGTCAAAGCCGACA
GACAAACTTTAGATAAGGTAGTCTCGAGGGTCAAAGTCAACAAGCAGACTGAAGGTAGGAAATCT
CTAGGGTCAAAGCTGAGAGACAGACTTTAGATAAGGCAATCTCCAAGGTCAAAGCCAACAAGCAG
ACTGAAAGGTAGGAA
Found at i:762810 original size:42 final size:42
Alignment explanation
Indices: 762706--762857 Score: 147
Period size: 42 Copynumber: 3.7 Consensus size: 42
762696 AGGGCTAAAT
* *
762706 TGATGGGAAAATAAAAAGTGAAAAAG-TTTCCTGGGTCTGAA-
1 TGATGGGCAAACAAAAAGTGAAAAAGTTTTCC-GGGTCTGAAC
* *
762747 TCAAT-GG--AA-AAAAAGTGAAAAAGTTTTCCGAGTCTGAAC
1 T-GATGGGCAAACAAAAAGTGAAAAAGTTTTCCGGGTCTGAAC
*
762786 TGATGGGCAAACAAAAAGTGAAAAA-ATTTCTCGGGTCTGAAC
1 TGATGGGCAAACAAAAAGTGAAAAAGTTTTC-CGGGTCTGAAC
* * *
762828 CGATGGGCAAACAAGAAGATGAAGAAGTTT
1 TGATGGGCAAACAAAAAG-TGAAAAAGTTT
762858 AGTGAGATTT
Statistics
Matches: 92, Mismatches: 9, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
38 24 0.26
39 10 0.11
41 9 0.10
42 41 0.45
43 6 0.07
44 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (42 bp):
TGATGGGCAAACAAAAAGTGAAAAAGTTTTCCGGGTCTGAAC
Found at i:776191 original size:43 final size:43
Alignment explanation
Indices: 776130--776238 Score: 173
Period size: 43 Copynumber: 2.5 Consensus size: 43
776120 ACGTTGCTAT
* * *
776130 TGCCTTCCTTCTACGTTGTTGCTACTCGATCCTTGTAGCTCTA
1 TGCCTTCCTCCTACGTTGTTGCTACTCGATCCTTGCAGCTCGA
* *
776173 TGCCTTCCTCCTACGTTGTTGCTACTTGATCGTTGCAGCTCGA
1 TGCCTTCCTCCTACGTTGTTGCTACTCGATCCTTGCAGCTCGA
776216 TGCCTTCCTCCTACGTTGTTGCT
1 TGCCTTCCTCCTACGTTGTTGCT
776239 GCCTTTTTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.10, C:0.31, G:0.18, T:0.40
Consensus pattern (43 bp):
TGCCTTCCTCCTACGTTGTTGCTACTCGATCCTTGCAGCTCGA
Found at i:776530 original size:17 final size:18
Alignment explanation
Indices: 776499--776532 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
776489 TTTTAGCTTG
776499 TTGCTTTGCTGTTCCACA
1 TTGCTTTGCTGTTCCACA
776517 TTGCTTTG-TGTTCCAC
1 TTGCTTTGCTGTTCCAC
776533 TTTCTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.09, C:0.26, G:0.18, T:0.47
Consensus pattern (18 bp):
TTGCTTTGCTGTTCCACA
Found at i:779317 original size:21 final size:21
Alignment explanation
Indices: 779293--779349 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
779283 AATTTATCCA
779293 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
779314 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
779335 AATGTATCGATACAT
1 AATGTATCGATACAT
779350 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:779432 original size:19 final size:19
Alignment explanation
Indices: 779405--779459 Score: 92
Period size: 19 Copynumber: 2.9 Consensus size: 19
779395 AATTCAATAA
779405 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
779424 TTTGCATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
779443 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
779460 TTAGCTACTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:779517 original size:13 final size:13
Alignment explanation
Indices: 779499--779524 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
779489 CATTTTTCTG
779499 TGTATCGATACAT
1 TGTATCGATACAT
779512 TGTATCGATACAT
1 TGTATCGATACAT
779525 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:779521 original size:33 final size:33
Alignment explanation
Indices: 779479--779545 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
779469 GCCAAGGAAA
***
779479 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
779512 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
779545 T
1 T
779546 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:781944 original size:51 final size:52
Alignment explanation
Indices: 781888--782009 Score: 158
Period size: 51 Copynumber: 2.3 Consensus size: 52
781878 AATTCTTCAC
* * *
781888 AATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAATTTTCTAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAACTAATTTTCTAT
* *
781939 AATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAAACTAA-TTTCTTCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAACTAATTTTC-T-AT
*
781992 AATCGAGGATACTCCAAC
1 AATCGGGGATACTCCAAC
782010 CCCGTTAATC
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
51 34 0.56
52 10 0.16
53 17 0.28
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.34
Consensus pattern (52 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAACTAATTTTCTAT
Found at i:782115 original size:52 final size:52
Alignment explanation
Indices: 782051--782221 Score: 177
Period size: 52 Copynumber: 3.3 Consensus size: 52
782041 TTATTTCTGA
* * * *
782051 GGGGAAACTCCAACCCCGATTTTATCGCT-AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTAT-TCTAAAAACACCAATTTTTCCATAATC
* * * * * *
782103 GGGGATACTCCAATCCCGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTCTAAAAACACCAATTTTTCC-ATAATC
* *
782155 GGGGATACTCCAACTCCGATTTTATTTCTAAAAATACCAATTTTT-CATAATC
1 GGGGATACTCCAACCCCGATTTTA-TTCTAAAAACACCAATTTTTCCATAATC
*
782207 GAGGATACTCCAACC
1 GGGGATACTCCAACC
782222 TCGTTATTTC
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
51 7 0.07
52 73 0.76
53 12 0.12
54 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
GGGGATACTCCAACCCCGATTTTATTCTAAAAACACCAATTTTTCCATAATC
Found at i:782240 original size:28 final size:28
Alignment explanation
Indices: 782204--782280 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
782194 ATTTTTCATA
* * *
782204 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
782232 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
782260 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
782281 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:782267 original size:212 final size:211
Alignment explanation
Indices: 781885--782285 Score: 608
Period size: 212 Copynumber: 1.9 Consensus size: 211
781875 CTCAATTCTT
* *
781885 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATA
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
* *
781950 CTCTAACTCCGATTTTATTTCCAAAAAAACTAATTTCTTCACAATCGAGGATACTCCAACCCCGT
66 CTCCAACTCCGATTTTATTTCCAAAAAAACCAATTTCTTCACAATCGAGGATACTCCAACCCCGT
* *
782015 TAATCATCGGGGATACTCCAACCACGTTATTTCTGAGGGGAAACTCCAACCCCGATTTTATCGCT
131 TAATCATCGGGGATACTCCAACCACGTTACTTCCGAGGGGAAACTCCAACCCCGATTTTATCGCT
782080 AAAACACTAATTTTTC
196 AAAACACTAATTTTTC
* * *
782096 CACAATCGGGGATACTCCAA-TCCCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCCAACT-CCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGA
* * * *
782160 TACTCCAACTCCGATTTTATTTCTAAAAATACCAATTT-TTCATAATCGAGGATACTCCAACCTC
64 TACTCCAACTCCGATTTTATTTCCAAAAAAACCAATTTCTTCACAATCGAGGATACTCCAACCCC
* * * *
782224 GTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAATCCCGATTTT
129 GTTA-ATCATCGGGGATACTCCAACCACGTTACTTCCGAGGGGAAACTCCAACCCCGATTTT
782286 TTTTTTCTTC
Statistics
Matches: 170, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
210 1 0.01
211 72 0.42
212 97 0.57
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (211 bp):
CACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAAAACCAATTTCTTCACAATCGAGGATACTCCAACCCCGT
TAATCATCGGGGATACTCCAACCACGTTACTTCCGAGGGGAAACTCCAACCCCGATTTTATCGCT
AAAACACTAATTTTTC
Found at i:784493 original size:50 final size:51
Alignment explanation
Indices: 784416--784549 Score: 198
Period size: 50 Copynumber: 2.6 Consensus size: 51
784406 ATTTGCCTAC
* * *
784416 ATGTATCGATACATTGAATAATATATCGATACATCTAGGTAAAATCC-AGA
1 ATGTATCGATACAATGAATAATGTATCGATACATCTAGGTAAAAACCTAGA
* *
784466 ATGTATCGATACAATGAAGAATGTATCGATACATCTGGGTAAAAACCTAGA
1 ATGTATCGATACAATGAATAATGTATCGATACATCTAGGTAAAAACCTAGA
* *
784517 ATCTATCGATACAATGAATAATGTATTGATACA
1 ATGTATCGATACAATGAATAATGTATCGATACA
784550 AACAATAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 42 0.56
51 33 0.44
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (51 bp):
ATGTATCGATACAATGAATAATGTATCGATACATCTAGGTAAAAACCTAGA
Found at i:790498 original size:13 final size:13
Alignment explanation
Indices: 790480--790507 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
790470 ATACAATGAT
790480 CAATGTATCGATA
1 CAATGTATCGATA
790493 CAATGTATCGATA
1 CAATGTATCGATA
790506 CA
1 CA
790508 TTGAATTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:790499 original size:33 final size:33
Alignment explanation
Indices: 790462--790527 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
790452 AAATTCCTAG
790462 ATGTATCAATACAATG-ATCAATGTATCGATACA
1 ATGTATCAATACAATGAAT-AATGTATCGATACA
* * *
790495 ATGTATCGATACATTGAATTATGTATCGATACA
1 ATGTATCAATACAATGAATAATGTATCGATACA
790528 TTGAATTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (33 bp):
ATGTATCAATACAATGAATAATGTATCGATACA
Found at i:790520 original size:20 final size:20
Alignment explanation
Indices: 790495--790549 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
790485 TATCGATACA
790495 ATGTATCGATACATTGAATT
1 ATGTATCGATACATTGAATT
790515 ATGTATCGATACATTGAATT
1 ATGTATCGATACATTGAATT
790535 ATGTATCGATACATT
1 ATGTATCGATACATT
790550 TCCTTGGCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTGAATT
Done.