Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold179
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2991183
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.31
Warning! 65816 characters in sequence are not A, C, G, or T
File 7 of 18
Found at i:951386 original size:33 final size:32
Alignment explanation
Indices: 951340--951506 Score: 94
Period size: 33 Copynumber: 5.2 Consensus size: 32
951330 TGACACTTGG
*
951340 TGGAGGAATAAACAGCAACACGACAGCAGTTGA
1 TGGAGGAAAAAACAGCAACA-GACAGCAGTTGA
* * * *
951373 TGGAAGAAAAAACAGTAACAG-C--TAGTGGA
1 TGGAGGAAAAAACAGCAACAGACAGCAGTTGA
* * * * * *
951402 -AGAAGAAATAACAGTAGCATGACAGCAGTTGC
1 TGGAGGAAAAAACAGCAACA-GACAGCAGTTGA
*
951434 TGGAGGAAGAACAACAGC-ACAG-CAGCAGCTGA
1 TGGAGGAA-AA-AACAGCAACAGACAGCAGTTGA
* * * * *
951466 TGGAGGAAAAAACAACAGCACGACGGCATTTGG
1 TGGAGGAAAAAACAGCAACA-GACAGCAGTTGA
951499 TGGAGGAA
1 TGGAGGAA
951507 GCAATAGCAG
Statistics
Matches: 100, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
28 16 0.16
29 6 0.06
30 6 0.06
31 5 0.05
32 22 0.22
33 37 0.37
34 3 0.03
35 5 0.05
ACGTcount: A:0.43, C:0.16, G:0.29, T:0.12
Consensus pattern (32 bp):
TGGAGGAAAAAACAGCAACAGACAGCAGTTGA
Found at i:951470 original size:32 final size:33
Alignment explanation
Indices: 951424--951486 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
951414 AGTAGCATGA
* * *
951424 CAGCAGTTGCTGGAGG-AAGAACAACAGCACAG
1 CAGCAGCTGATGGAGGAAAAAACAACAGCACAG
951456 CAGCAGCTGATGGAGGAAAAAACAACAGCAC
1 CAGCAGCTGATGGAGGAAAAAACAACAGCAC
951487 GACGGCATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.41, C:0.22, G:0.29, T:0.08
Consensus pattern (33 bp):
CAGCAGCTGATGGAGGAAAAAACAACAGCACAG
Found at i:951542 original size:22 final size:25
Alignment explanation
Indices: 951499--951544 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 25
951489 CGGCATTTGG
951499 TGGAGGAAGCAATAGCAGCAGCTGA
1 TGGAGGAAGCAATAGCAGCAGCTGA
951524 TGGAGGAAG-AA-A-CAGCAGCTG
1 TGGAGGAAGCAATAGCAGCAGCTG
951545 TTGTTCTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.43
23 1 0.05
24 2 0.10
25 9 0.43
ACGTcount: A:0.37, C:0.15, G:0.37, T:0.11
Consensus pattern (25 bp):
TGGAGGAAGCAATAGCAGCAGCTGA
Found at i:953153 original size:156 final size:156
Alignment explanation
Indices: 952952--954515 Score: 1051
Period size: 156 Copynumber: 10.2 Consensus size: 156
952942 CTAAGGGTAT
* * * *
952952 TAGG-TACTTTTACGTCGAAGGTATACTCTTAAGGGCATTTTGGTAATTTTTT-GAACTAACTCC
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTTAGAACTAACTCC
* * * * * ** *
953015 TAGGTCATCACTAGGTCCACTTTTATGCCAAAAGTGGGGATTTAGGATAGGTTCATTCTTTTTAT
66 TAGGTCATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCT
* * *
953080 GAATCTTTTTAAGTCTTTTAGGGTTAT
131 -AGTCTTTTTAAGTCCTTTAGGGTTAC
* * * * * *
953107 TAGGATACTTTTACGTCGAAGGTATACCCCTAGGGGTATTTTGGTAATTTGTAAGAA-TCAAGTC
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTTAGAACT-AACTC
* * ** * * * *
953171 CTAAGTTATCACCGGGTCTGCTTTTATGCCGAAGGTGGACATTTAGGATAGCTTCATCACATTTC
65 CTAGGTCATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTC
*
953236 TAGTCTTTTTAAGTCCTTTAGGGTTGCC
130 TAGTCTTTTTAAGTCCTTTAGGGTT-AC
* * * * * * * *
953264 AAGG-TACTTTTATGTTGAATGTATACCCATAGAGGCATTTTCGTACTTTTTTAGAACTAAGTCT
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTTAGAACTAACTCC
* * * * * * * *
953328 TAGG-CTGTCCCCAAGTCTGCTTTTATGCTGAAGGTGGGCATTTAGGATAGTTTCATCGCATTTC
66 TAGGTC-ATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTC
*
953392 TAGTCTTTTTAAGTCCTTTAGGGTTGC
130 TAGTCTTTTTAAGTCCTTTAGGGTTAC
** * * * ** * * *
953419 CGGGATACTTTTATGTTGAAGGTATACCTATAAAGGTATTTTCGTACTTTCTT--AA--AA---C
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTTAGAACTAACTCC
* ** * *
953477 T--G--------A-GTTCGCTTTTATGTTGAAGGTGGGCATTTAGGATAGCTTCATCGCATTTCT
66 TAGGTCATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCT
* *
953531 AGTTTTTTTAAGTCCTTTAGGGTTGCC
131 AGTCTTTTTAAGTCCTTTAGGGTT-AC
* ** * *
953558 GAGG-TACTTTTACGTCGAAGG--TACCC-TAACGGCATTTTTGTAATTTTTTAAGAACCAACTC
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTT-AGAACTAACTC
* * * * *
953619 CTAGGTCATCA-TCAGGTTCGTTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCTCATTT
65 CTAGGTCATCACT-AGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTT
* * *
953683 CTAGTCTTTTTTAGTCTTTTAAGGTTA-
129 CTAGTCTTTTTAAGTCCTTTAGGGTTAC
* * * * * *
953710 TCGAGATACTTTTACGTCGAAGGTATACCCATAGGGGTATTTTTGT-ACTTTTTAGAA-TCGAGT
1 TAG-GATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTTAGAACT-AACT
** * ** *
953773 CCTAGG-CTATCACCGGGTCTGCTTTTATGTTGAAGGTGGGCATTTAGGATAGGTTCATCGCATT
64 CCTAGGTC-ATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATT
* * *
953837 TCTAGTCATTTTAAGTCCTTTAAGGTTGC
128 TCTAGTCTTTTTAAGTCCTTTAGGGTTAC
* * * * * *
953866 TGGGATACTTTTACGTCAAAGGTATACCCATA-GGGCTATTTTTGTATTTTTTTA-AA-TCGAGT
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGC-ATTTTCGTAATTTTTTAGAACT-AACT
** * * * **
953928 CCTAGGTTGTCACCAGGTTCACTTTTATGCCGAAGGTGGGCATTT-GTGATAGGTTCATTGCATT
64 CCTAGGTCATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAG-GATAGGTTCATCCCATT
* *
953992 TCTAGTCTTTTTAAGT-TTTTAGGGTT-G
128 TCTAGTCTTTTTAAGTCCTTTAGGGTTAC
* ** * * * *
954019 TCGAGATACTTTTACGTTAAAGGTATACCCTTAGGGACATTTTCATAATTTTTTAAGAACCAACT
1 TAG-GATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTT-AGAACTAACT
* * * * * * *
954084 CCTTGGTCATCACTAGGTTCGCTTTTATGCCGAAAGTGGGTATTTAGGATATGTTCACCCCTTTT
64 CCTAGGTCATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTT
* ** * *
954149 GTAACCTTTTTTCAGTCTTTTAAGGG-TAC
129 CTAGTC-TTTTTAAGTCCTTT-AGGGTTAC
* * * * * *
954178 CAGGATA-TTTTCACGTCCAAGGTAT-CCCCTAGGGGTATTTTCATAATTTTTTTTAGAACCAAC
1 TAGGATACTTTT-ACGTCGAAGGTATACCCATAGGGGCATTTTCGTAA--TTTTTTAGAACTAAC
* * * *** * * *
954241 TCTTAGGTCATCA-TCGGGTTCGCTTTTATGCCGAAGGTGCATATTTAAGATA-GTTCACCCCTT
63 TCCTAGGTCATCACT-AGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCAT
* *
954304 TTATAGTTTTTTTAAGTCCTTTAGGAG-TAC
127 TTCTAGTCTTTTTAAGTCCTTTAGG-GTTAC
* * * * *** * * *
954334 CAAGATACTTTCACATCGAAGGTAT-CTTTTGGGGGCATTTTCGTAATTTTTTTAGAACTGAGTC
1 TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAA-TTTTTTAGAACTAACTC
* * ** * * * *
954398 TTAGGTCATC-GTCAGGTCTACTTTTATGCCAAAGGTAGGCATTTAGGATATGTTCATCCCTTTT
65 CTAGGTCATCACT-AGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTT
** ** * *
954462 AAAACCTTTTTTAAGTCTTTTAGGGGTAC
129 CTAGTC-TTTTTAAGTCCTTTAGGGTTAC
* * *
954491 TGGGATACTTTTACATCGAAAGTAT
1 TAGGATACTTTTACGTCGAAGGTAT
954516 CCCTTAAAGG
Statistics
Matches: 1145, Mismatches: 204, Indels: 118
0.78 0.14 0.08
Matches are distributed among these distances:
135 18 0.02
136 4 0.00
138 87 0.08
139 4 0.00
140 2 0.00
143 2 0.00
145 1 0.00
147 1 0.00
149 1 0.00
152 3 0.00
153 4 0.00
154 138 0.12
155 262 0.23
156 373 0.33
157 162 0.14
158 72 0.06
159 11 0.01
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (156 bp):
TAGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTCGTAATTTTTTAGAACTAACTCC
TAGGTCATCACTAGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCT
AGTCTTTTTAAGTCCTTTAGGGTTAC
Found at i:953823 original size:155 final size:154
Alignment explanation
Indices: 953480--954326 Score: 730
Period size: 155 Copynumber: 5.5 Consensus size: 154
953470 TTAAAACTGA
* * *
953480 GTTCGCTTTTATGTTGAAGGTGGGCATTTAGGATAGCTTCATCGCATTTCTAGTTTTTTTAAGTC
1 GTTCGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCTTTTTAAGTC
* * * * ** *
953545 CTTTAGGGTTGCCGAGGTACTTTTACGTCGAAGG--TACCC-TAACGGCATTTTTGTAATTTTTT
66 CTTTAAGGTTGTCGAGATACTTTTACGTCAAAGGTATACCCATAGGGGTATTTTTGT-ATTTTTT
* * * *
953607 AAGAACCAACTCCTAGGTCATCATCAG
130 -AGAATCGAGTCCTAGGT-ATCACCAG
* * * *
953634 GTTCGTTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCTCATTTCTAGTCTTTTTTAGTC
1 GTTCGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCTTTTTAAGTC
* * * *
953699 TTTTAAGGTTATCGAGATACTTTTACGTCGAAGGTATACCCATAGGGGTATTTTTGTACTTTTTA
66 CTTTAAGGTTGTCGAGATACTTTTACGTCAAAGGTATACCCATAGGGGTATTTTTGTATTTTTTA
953764 GAATCGAGTCCTAGGCTATCACC-G
131 GAATCGAGTCCTAGG-TATCACCAG
* * *
953788 GGTCTGCTTTTATGTTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCATTTTAAGT
1 GTTC-GCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCTTTTTAAGT
* *
953853 CCTTTAAGGTTG-CTGGGATACTTTTACGTCAAAGGTATACCCATAGGGCTATTTTTGTATTTTT
65 CCTTTAAGGTTGTC-GAGATACTTTTACGTCAAAGGTATACCCATAGGGGTATTTTTGTA-TTTT
*
953917 TTA-AATCGAGTCCTAGGTTGTCACCAG
128 TTAGAATCGAGTCCTAGG-TATCACCAG
* * *
953944 GTTCACTTTTATGCCGAAGGTGGGCATTT-GTGATAGGTTCATTGCATTTCTAGTCTTTTTAAGT
1 GTTCGCTTTTATGCTGAAGGTGGGCATTTAG-GATAGGTTCATCGCATTTCTAGTCTTTTTAAGT
* * * * ** **
954008 -TTTTAGGGTTGTCGAGATACTTTTACGTTAAAGGTATACCCTTAGGGACATTTTCATAATTTTT
65 CCTTTAAGGTTGTCGAGATACTTTTACGTCAAAGGTATACCCATAGGGGTATTTTTGT-ATTTTT
* * * * *
954072 TAAGAACCAACTCCTTGGTCATCACTAG
129 T-AGAATCGAGTCCTAGGT-ATCACCAG
* * * * * * * * ** *
954100 GTTCGCTTTTATGCCGAAAGTGGGTATTTAGGATATGTTCACCCCTTTTGTAACCTTTTTTCAGT
1 GTTCGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTC-TTTTTAAGT
* * * * * *
954165 CTTTTAAGG--GTACCAGGATA-TTTTCACGTCCAAGGTAT-CCCCTAGGGGTATTTTCATAATT
65 CCTTTAAGGTTGT-CGA-GATACTTTT-ACGTCAAAGGTATACCCATAGGGGTATTTT--T-GTA
* * * * * *
954226 TTTTTTAGAACCAACTCTTAGGTCATCATCGG
124 TTTTTTAGAATCGAGTCCTAGGT-ATCACCAG
* *** * * * * * *
954258 GTTCGCTTTTATGCCGAAGGTGCATATTTAAGATA-GTTCACCCCTTTTATAGTTTTTTTAAGTC
1 GTTCGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCTTTTTAAGTC
954322 CTTTA
66 CTTTA
954327 GGAGTACCAA
Statistics
Matches: 578, Mismatches: 92, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
154 145 0.25
155 201 0.35
156 95 0.16
157 55 0.10
158 74 0.13
159 6 0.01
160 2 0.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (154 bp):
GTTCGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCTTTTTAAGTC
CTTTAAGGTTGTCGAGATACTTTTACGTCAAAGGTATACCCATAGGGGTATTTTTGTATTTTTTA
GAATCGAGTCCTAGGTATCACCAG
Found at i:954044 original size:309 final size:309
Alignment explanation
Indices: 953484--954054 Score: 814
Period size: 309 Copynumber: 1.8 Consensus size: 309
953474 AACTGAGTTC
**
953484 GCTTTTATGTTGAAGGTGGGCATTTAGGATAGCTTCATCGCATTTCTAGTTTTTTTAAGTCCTTT
1 GCTTTTATGTTGAAGGTGGGCATTTAGGATAGCTTCATCGCATTTCTAGTCATTTTAAGTCCTTT
* *
953549 AGGGTTGCCGAGGTACTTTTACGTCGAAGGTACCCTAACGGCATTTTTGTAATTTTTTAAGAACC
66 AAGGTTGCCGAGGTACTTTTACGTCAAAGGTACCCTAACGGCATTTTTGTAATTTTTTAAGAACC
* ** * *
953614 AACTCCTAGGTCATCATCAGGTTCGTTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCTC
131 AACTCCTAGGTCATCACCAGGTTCACTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCTC
* *
953679 ATTTCTAGTCTTTTTTAGTCTTTTAAGGTTATCGAGATACTTTTACGTCGAAGGTATACCCATAG
196 ATTTCTAGTCTTTTTAAGTCTTTTAAGGTTATCGAGATACTTTTACGTCAAAGGTATACCCATAG
953744 GGGTATTTTTGTACTTTTTAGAATCGAGTCCTAGGCTATCACCGGGTCT
261 GGGTATTTTTGTACTTTTTAGAATCGAGTCCTAGGCTATCACCGGGTCT
*
953793 GCTTTTATGTTGAAGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTCATTTTAAGTCCTTT
1 GCTTTTATGTTGAAGGTGGGCATTTAGGATAGCTTCATCGCATTTCTAGTCATTTTAAGTCCTTT
* * *
953858 AAGGTTGCTG-GGATACTTTTACGTCAAAGGTATACCC-ATAGGGCTATTTTTGT-ATTTTTTTA
66 AAGGTTGCCGAGG-TACTTTTACGTCAAAGG--TACCCTA-ACGGC-ATTTTTGTAATTTTTTAA
* * * **
953920 -AATCGAGTCCTAGGTTGTCACCAGGTTCACTTTTATGCCGAAGGTGGGCATTT-GTGATAGGTT
126 GAACCAACTCCTAGGTCATCACCAGGTTCACTTTTATGCCGAAGGTGGGCATTTAG-GATAGGTT
* * *
953983 CAT-TGCATTTCTAGTCTTTTTAAGT-TTTTAGGGTTGTCGAGATACTTTTACGTTAAAGGTATA
190 CATCT-CATTTCTAGTCTTTTTAAGTCTTTTAAGGTTATCGAGATACTTTTACGTCAAAGGTATA
*
954046 CCCTTAGGG
254 CCCATAGGG
954055 ACATTTTCAT
Statistics
Matches: 231, Mismatches: 24, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
308 2 0.01
309 130 0.56
310 74 0.32
311 17 0.07
312 8 0.03
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.40
Consensus pattern (309 bp):
GCTTTTATGTTGAAGGTGGGCATTTAGGATAGCTTCATCGCATTTCTAGTCATTTTAAGTCCTTT
AAGGTTGCCGAGGTACTTTTACGTCAAAGGTACCCTAACGGCATTTTTGTAATTTTTTAAGAACC
AACTCCTAGGTCATCACCAGGTTCACTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCTC
ATTTCTAGTCTTTTTAAGTCTTTTAAGGTTATCGAGATACTTTTACGTCAAAGGTATACCCATAG
GGGTATTTTTGTACTTTTTAGAATCGAGTCCTAGGCTATCACCGGGTCT
Found at i:954250 original size:158 final size:157
Alignment explanation
Indices: 953588--954521 Score: 540
Period size: 155 Copynumber: 6.0 Consensus size: 157
953578 GTACCCTAAC
** * * * * *
953588 GGCATTTTTGTAATTTTTTAAGAACCAACTCCTAGGTCATCATCAGGTTCGTTTTTATGCTGAAG
1 GGCATTTTCATAATTTTTTTAGAACCAACTCTTAGGTCATCATCAGGTTCGCTTTTATGCCGAAA
* * * * * ** * * *
953653 GTGGGTATTTAGGATAGGTTCATCTCATTTCTAGTCTTTTTT-AGTCTTTTAAGGTTATCGAGAT
66 GTGGGTATTTAGGATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGGGTACCAAGAT
* * * *
953717 ACTTTTACGTCGAAGGTATACCCATAGG
131 ACTTTCACATCCAAGGTAT-CCCTTAGG
* ** * * * * * * * **
953745 GGTATTTTTGT-A-CTTTTTAGAATCGAGTCCTAGG-CTATCA-CCGGGTCTGCTTTTATGTTGA
1 GGCATTTTCATAATTTTTTTAGAACCAACTCTTAGGTC-ATCATCAGGTTC-GCTTTTATGCCGA
* * * * * * * ** * * * * ***
953806 AGGTGGGCATTTAGGATAGGTTCATCGCATTTCTAGTC-ATTTTAAGTCCTTTAAGGTTGCTGGG
64 AAGTGGGTATTTAGGATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGGGTACCAAG
* * * *
953870 ATACTTTTACGTCAAAGGTATACCCATA-G
129 ATACTTTCACATCCAAGGTAT-CCCTTAGG
** * * * * ** * *
953899 GGCTATTTTTGT-ATTTTTTTA-AATCGAGTCCTAGGTTGTCACCAGGTTCACTTTTATGCCGAA
1 GGC-ATTTTCATAATTTTTTTAGAACCAACTCTTAGGTCATCATCAGGTTCGCTTTTATGCCGAA
* * * *** * * ** ** *
953962 GGTGGGCATTT-GTGATAGGTTCATTGCATTTCTAGTC-TTTTTAAGT-TTTT-AGGGTTGTCGA
65 AGTGGGTATTTAG-GATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGGG-TACCAA
* * **
954023 GATACTTTTACGTTAAAGGTATACCCTTAGG
128 GATACTTTCACATCCAAGGTAT-CCCTTAGG
* *
954054 GACATTTTCATAATTTTTTAAGAACCAACTCCTT-GGTCATCA-CTAGGTTCGCTTTTATGCCGA
1 GGCATTTTCATAATTTTTTTAGAACCAACT-CTTAGGTCATCATC-AGGTTCGCTTTTATGCCGA
* * *
954117 AAGTGGGTATTTAGGATATGTTCACCCCTTTTGTAACCTTTTTTCAGTCTTTTAAGGGTACCAGG
64 AAGTGGGTATTTAGGATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGGGTACCAAG
* * *
954182 ATATTTTCACGTCCAAGGTATCCCCTAGG
129 ATACTTTCACATCCAAGGTATCCCTTAGG
* *
954211 GGTATTTTCATAATTTTTTTTAGAACCAACTCTTAGGTCATCATCGGGTTCGCTTTTATGCCGAA
1 GGCATTTTCATAA-TTTTTTTAGAACCAACTCTTAGGTCATCATCAGGTTCGCTTTTATGCCGAA
* ** * ** *
954276 GGTGCATATTTAAGATA-GTTCACCCCTTTTAT-AGTTTTTTTAAGTCCTTT-AGGAGTACCAAG
65 AGTGGGTATTTAGGATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGG-GTACCAAG
* ** *
954338 ATACTTTCACATCGAAGGTATCTTTTGGG
129 ATACTTTCACATCCAAGGTATCCCTTAGG
* ** * * *
954367 GGCATTTTCGTAATTTTTTTAGAACTGAGTCTTAGGTCATCGTCAGG-TCTACTTTTATGCC-AA
1 GGCATTTTCATAATTTTTTTAGAACCAACTCTTAGGTCATCATCAGGTTC-GCTTTTATGCCGAA
* * * * * ***
954430 AGGTAGGCATTTAGGATATGTTCATCCCTTTTAAAACCTTTTTTAAGTCTTTTAGGGGTACTGGG
65 A-GTGGGTATTTAGGATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGGGTACCAAG
* * *
954495 ATACTTTTACATCGAAAGTATCCCTTA
129 ATACTTTCACATCCAAGGTATCCCTTA
954522 AAGGTATTTT
Statistics
Matches: 633, Mismatches: 117, Indels: 54
0.79 0.15 0.07
Matches are distributed among these distances:
153 3 0.00
154 57 0.09
155 254 0.40
156 134 0.21
157 98 0.15
158 82 0.13
159 5 0.01
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (157 bp):
GGCATTTTCATAATTTTTTTAGAACCAACTCTTAGGTCATCATCAGGTTCGCTTTTATGCCGAAA
GTGGGTATTTAGGATATGTTCACCCCTTTTATAACCTTTTTTAAGTCTTTTAAGGGTACCAAGAT
ACTTTCACATCCAAGGTATCCCTTAGG
Found at i:958122 original size:13 final size:12
Alignment explanation
Indices: 958099--958128 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
958089 AGAAAAGAAA
958099 GAAAAGAAAAAG
1 GAAAAGAAAAAG
958111 GAAAAGGAAAAAG
1 GAAAA-GAAAAAG
958124 GAAAA
1 GAAAA
958129 AACATGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
GAAAAGAAAAAG
Found at i:959966 original size:90 final size:89
Alignment explanation
Indices: 959853--960072 Score: 243
Period size: 90 Copynumber: 2.4 Consensus size: 89
959843 ATTAATTTCT
* * *
959853 TCTTTCTTAACTC-CTAGATGGTATTGATGCATCACAAAGTCTAATTTCC-ATGGGGCAA-GGTA
1 TCTTTCTCAA-TCACTAGATGGTATTGATGCATCACAAAGCCTAATTTCCTATAGGGCAACGG-A
*
959915 CAGCCCACACAATCCCAATCATATCCCC
64 CAACCCACACAATCCCAATCATAT--CC
* * *
959943 TCTTTCTCAATCACTAGATGGTATTGATGCATCACAAAGCCTGATTTCCTTTAGGGCAACGGGCA
1 TCTTTCTCAATCACTAGATGGTATTGATGCATCACAAAGCCTAATTTCCTATAGGGCAACGGACA
* * * *
960008 ACCCACATATTCCTAATTATATCC
66 ACCCACACAATCCCAATCATATCC
960032 -CTTTCATCCAA-CTACTAGATGGTATTGATGCATCACAAAGC
1 TCTTTC-T-CAATC-ACTAGATGGTATTGATGCATCACAAAGC
960073 TTGATATCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
88 5 0.04
89 6 0.05
90 74 0.65
91 26 0.23
92 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (89 bp):
TCTTTCTCAATCACTAGATGGTATTGATGCATCACAAAGCCTAATTTCCTATAGGGCAACGGACA
ACCCACACAATCCCAATCATATCC
Found at i:960432 original size:36 final size:36
Alignment explanation
Indices: 960383--960451 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
960373 ATTGTATCCG
960383 GTCAAACTCTTTTCATCCCTCGGTGGACTATATCTA
1 GTCAAACTCTTTTCATCCCTCGGTGGACTATATCTA
* * * * *
960419 GTCAAATTTTTTTCTTCCCTCGTTTGACTATAT
1 GTCAAACTCTTTTCATCCCTCGGTGGACTATAT
960452 TGGTATTAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (36 bp):
GTCAAACTCTTTTCATCCCTCGGTGGACTATATCTA
Found at i:960797 original size:43 final size:43
Alignment explanation
Indices: 960729--960830 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
960719 GATACTTTAA
* * * *
960729 TCTTAAGTCTACCTGTCAGCTTTGACCTTGGAGACTTCT-TCCC
1 TCTTAAGTCTGCCTATCAACCTTGACCTTGGAGACTT-TATCCC
*
960772 TCTTAAGTCTGCCTATCAACCTTGACCTTGGAGACTTTATTCC
1 TCTTAAGTCTGCCTATCAACCTTGACCTTGGAGACTTTATCCC
* *
960815 TTTTAAGTCGGCCTAT
1 TCTTAAGTCTGCCTAT
960831 TGGCTTCGAC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (43 bp):
TCTTAAGTCTGCCTATCAACCTTGACCTTGGAGACTTTATCCC
Found at i:960910 original size:42 final size:42
Alignment explanation
Indices: 960861--960942 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
960851 TTCTTTACCC
*
960861 TTTGTCTGCCCATTGGCTTAGACCCGGGAGACCTCTCTATAT
1 TTTGTCTGCCCATCGGCTTAGACCCGGGAGACCTCTCTATAT
* ** *
960903 TTTGTCTGCCCGTCGGCTTAGACTTGGGAGACTTCTCTAT
1 TTTGTCTGCCCATCGGCTTAGACCCGGGAGACCTCTCTAT
960943 CTTTGGGAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.15, C:0.27, G:0.23, T:0.35
Consensus pattern (42 bp):
TTTGTCTGCCCATCGGCTTAGACCCGGGAGACCTCTCTATAT
Found at i:960950 original size:19 final size:19
Alignment explanation
Indices: 960926--960965 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
960916 CGGCTTAGAC
960926 TTGGGAGACTTCTCTATCT
1 TTGGGAGACTTCTCTATCT
960945 TTGGGAGACTTCTCTATCT
1 TTGGGAGACTTCTCTATCT
960964 TT
1 TT
960966 TGTCTACCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.45
Consensus pattern (19 bp):
TTGGGAGACTTCTCTATCT
Found at i:960981 original size:61 final size:61
Alignment explanation
Indices: 960886--961007 Score: 192
Period size: 61 Copynumber: 2.0 Consensus size: 61
960876 GCTTAGACCC
*
960886 GGGAGACCTCTCTATATTTTGTCTGCCCGTCGGCTTAGACTT-GGGAGACTTCTCTATCTTT
1 GGGAGACCTCTCTATATTTTGTCTACCCGTCGGCTTAGA-TTCGGGAGACTTCTCTATCTTT
* * *
960947 GGGAGACTTCTCTATCTTTTGTCTACCCGTCGGCTTAGATTCGGGAGACTTCTTTATCTTT
1 GGGAGACCTCTCTATATTTTGTCTACCCGTCGGCTTAGATTCGGGAGACTTCTCTATCTTT
961008 TGTCTGTCCG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
60 2 0.04
61 54 0.96
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (61 bp):
GGGAGACCTCTCTATATTTTGTCTACCCGTCGGCTTAGATTCGGGAGACTTCTCTATCTTT
Found at i:961038 original size:42 final size:42
Alignment explanation
Indices: 960947--961064 Score: 121
Period size: 42 Copynumber: 2.8 Consensus size: 42
960937 CTCTATCTTT
* * *
960947 GGGAGACTTCTCTATCTTTTGTCTACCCGTCGGCTTAGATTC
1 GGGAGACTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACTC
** *
960989 GGGAGACTTCTTTATCTTTTGTCTGTCCGTCAGCTTTGAACT-
1 GGGAGACTTCTTTATCTTTTGTCTACCCGTCAGCTTAG-ACTC
* ** * *
961031 GGTAGACTTCTTTGCCCTTTGTCTACCCATCAGC
1 GGGAGACTTCTTTATCTTTTGTCTACCCGTCAGC
961065 ATAAATTTGG
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 60 0.97
43 2 0.03
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.39
Consensus pattern (42 bp):
GGGAGACTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACTC
Found at i:961121 original size:42 final size:42
Alignment explanation
Indices: 961082--961293 Score: 176
Period size: 43 Copynumber: 5.0 Consensus size: 42
961072 TGGGAGACAG
* **
961082 CTTCCCCTTAAGTCTGCTTGCCGGTTTTGACCTTGGAGACTT
1 CTTCCCCTTAAGTCTGCTTGTCGACTTTGACCTTGGAGACTT
* * * *
961124 CCTCACCTTAAGTCT-ATTGTCGACTTTGACTCTT-GAGACAT
1 CTTCCCCTTAAGTCTGCTTGTCGACTTTGAC-CTTGGAGACTT
* * * * * *
961165 CTTCGCCCTTAAGTCTACCTATCGGCTTTGACCCTAGAGACTT
1 CTTC-CCCTTAAGTCTGCTTGTCGACTTTGACCTTGGAGACTT
* * * *
961208 TTTCCCCCATAAGTCTGCTTGTCGATTTTAACCTTGGAGACTTT
1 CTT-CCCCTTAAGTCTGCTTGTCGACTTTGACCTTGGAGAC-TT
* * * **
961252 GTTCCCCTTAAGTCTGCTAGTCAACTTTGACCCAGGAGACTT
1 CTTCCCCTTAAGTCTGCTTGTCGACTTTGACCTTGGAGACTT
961294 TCTTTGCCCT
Statistics
Matches: 131, Mismatches: 33, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
41 20 0.15
42 30 0.23
43 76 0.58
44 5 0.04
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.36
Consensus pattern (42 bp):
CTTCCCCTTAAGTCTGCTTGTCGACTTTGACCTTGGAGACTT
Found at i:961363 original size:42 final size:41
Alignment explanation
Indices: 961303--961461 Score: 158
Period size: 42 Copynumber: 3.8 Consensus size: 41
961293 TTCTTTGCCC
* * *
961303 TTTGTTTGCCCATCGGCTTAGACTCGGTAGACCTCTCTATCT
1 TTTGTCTGCCCATTGGCTTAGACTCGG-AGACTTCTCTATCT
*
961345 TTTGTCTGCCCATTGGCTTAGACTTGGGAGACTTCTCTA-CTT
1 TTTGTCTGCCCATTGGCTTAGAC-TCGGAGACTTCTCTATC-T
* ** *
961387 TTTGTCTGCCCGTTGGCTTAGACCTAAGAGATTTCTCTATCT
1 TTTGTCTGCCCATTGGCTTAGA-CTCGGAGACTTCTCTATCT
* ** *
961429 TTCGTCTGCCCATAAGCTTTGACTCGGAAGACT
1 TTTGTCTGCCCATTGGCTTAGACTCGG-AGACT
961462 CTTTTGCCCT
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 4 0.04
42 87 0.91
43 5 0.05
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38
Consensus pattern (41 bp):
TTTGTCTGCCCATTGGCTTAGACTCGGAGACTTCTCTATCT
Found at i:961585 original size:43 final size:43
Alignment explanation
Indices: 961514--961824 Score: 123
Period size: 43 Copynumber: 7.2 Consensus size: 43
961504 GCTTCATCTC
** * *
961514 AAGTCTGCCTATCAGCTTTTATCCTAGAGACTTTTTCACCCTT
1 AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTTTTTCACCCTT
* *** * *
961557 AAGTCTGCTTGTTGGCTTTGACCTTAGAGA-TTTCGT-ACCCTTT
1 AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTTT-TTCACCC-TT
* *
961600 AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTTCTTCCCCCCTT
1 AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTT-TTTCACCCTT
* ** ** * **
961644 AAGTTTGCCTATC-GACTTTGACCCCGGAGACATCCTCACCCTT
1 AAGTCTGCCTGCCAG-CTTTGACCCTAGAGACTTTTTCACCCTT
* * * * * * * *
961687 AATTTTGCTTGTCAGTTTTGACCCTAAAGACTTATTT-GCCTTT
1 AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTT-TTTCACCCTT
* ** * * * * *
961730 AAGTCTACCTATCGGTTTTGACCCTAAAGACTTCCTTC-CCCGT
1 AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTT-TTTCACCCTT
* * * * *
961773 AAGTCTGTCTGTCGGCTTTCA-CCTAAGAGACTTTCTTTACCCTT
1 AAGTCTGCCTGCCAGCTTTGACCCT-AGAGACTTT-TTCACCCTT
*
961817 -TGTCTGCC
1 AAGTCTGCC
961825 CGTCGGCATA
Statistics
Matches: 197, Mismatches: 59, Indels: 24
0.70 0.21 0.09
Matches are distributed among these distances:
42 10 0.05
43 148 0.75
44 35 0.18
45 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.37
Consensus pattern (43 bp):
AAGTCTGCCTGCCAGCTTTGACCCTAGAGACTTTTTCACCCTT
Found at i:962089 original size:43 final size:43
Alignment explanation
Indices: 961983--974198 Score: 1571
Period size: 43 Copynumber: 285.8 Consensus size: 43
961973 ACTTCATCTA
* * * *
961983 AAGTCTGCCTA-CGGCTTTAACCTTAAAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * * * * *
962025 TAGTCTACCTATCAACTTTGACCCTAGAGATTTTTTTGTCATT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
962068 TAGTCTGCCTGTTGGCGTTGACCTTGGAAACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
962111 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
962154 AAGTCTACCTATTGGCTTTCACCCTAAAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* *
962197 TAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTC-CCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* *
962240 AAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTC-CCTTCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC--CTT
* * * * *
962284 AAGTCTACCTGTCAGCTTTGACCCTGGAGACTTCTTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ** * * *
962327 AAGTCTAG-CTGTCGATTTTGACCCTCGAGACTTCTTCTCCCTC
1 AAGTCT-GCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
962370 AAGTCTGCCTGTTGGCTTTAACCTTGGAGACTTTTTC-CTCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * *
962413 AAGTCTG-CTGGTCGGCTTTAACCCTGGAGACATCATTC-CCCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * * * **
962456 AAGTTTGCTTGTCGGCCTTGACCCAAGAAACTTTCTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* * * * * * * **
962500 -TGTCTTCCCATCGACTTAGACCCGAGAGACCTC-TCTATCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTC-GCCCTT
* * *** * * **
962542 -TGTCTGTC-ATCAATTTTGA-CTTGAAAGACTTC-TCTACCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
** * * * **
962582 TTGTCTGCCTGTTGGCTTAGACCC--G-GACTTC-TCTACCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * *** * * * *
962621 TTGTCTGCCCATTAACTTTGACCCAAGATA-TCCCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACT-TCTTCGCCCTT
* * ** * * * * ** *
962664 CA-TCTACCCGTTGG-TTTAAACCTGAGAGACTACTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* ** ** * *
962705 AAGTCTCCCGGTCAACTTTGACCTTGGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
962748 AAGTCTGCTTGTTGGTTTTGACCCTGGAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
962791 AAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTCTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * * * *
962835 AAGTCTGCATGTCGACTTTGACCTTGGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
962878 AAGTCTGCCTGTTGGCTTTGACCCTAGAGACTTCTTCGTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * ** * * * *
962921 AAGTTTGCTTGTCAACTTTGACCATGGAGATTTCATC-CCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * *
962963 AAGTCTACCTGTCGACTTTGAGCTTGGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
963006 AAGTCTGCTTGTTGGCTTTGACGCTAGAGACTTCTTCTCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * *
963049 AAGTCTGTTTGTCAGCTTTGACCGTAAAGACTTCTTC-CCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * ** * * * * * *
963092 ATGTTTGCCCGTC-GATTTTAACCTCGGAGACTTTGTTC-CCCAT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGAC-TTCTTCGCCCTT
* * * * * *
963135 AAGTGTCTGCTTGTTGGCTTTG-CACCTGGTGACTTCTTCCCCTCTT
1 AA--GTCTGCCTATCGGCTTTGAC-CCTAGAGACTTCTTCGCC-CTT
* ** *
963181 AAGTTTGCCTATCGAATTTGACCCTACAGACTTCCTT-GCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTT-CTTCGCCCTT
* * *
963224 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
963267 AAGTCTGCCTGTCGGCTTTGACTCGAGAGATTTCTTC-CCTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * *
963310 TAGTCTGCTTGTCGGCTTTGACCCTACAGACTTTGTTC-CCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
** * **
963353 AAGTCTGCCTATCACCTTTGACCCAAGAGACTTTCTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* * * ** * * *** *
963397 -TGTGTACCCGTCAGCTTAGA-CAGGGAGATCTCTCTAT---CTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGA-CT-TCT-TCGCCCTT
* * * * * * * * * ***
963438 TATTTTTCC-GTCGGCTTAGA-TCTGGGAGACTT-ATCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
** * ** ** * * ****
963479 TTGTCTACCCGTCAACTTAGACCC-GGTAGACTTC-TCTATATT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
** * * * * * *
963521 TTGTCTG-CTCGTCAGCTTTGA-CATCGGATAC-TCTTTTGCCCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCT-AGAGACTTC-TTCGCCCTT
* * * * * **
963564 -TGTCTAGTCTTTTTGTCGGCTTTGACCTTGGAGTTTTCCTTAC-CCC-T
1 AAGTCT-G-C---CTATCGGCTTTGACCCTAGAGACTT-CTT-CGCCCTT
*
963611 AAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ** *** ** * *
963654 AAATCTGCCCGTTAACTTAAACCCTAGAAACTTTTTC-CTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * * *
963697 AAGTCTGCATATCGGCTTTGATCGTAGAGTCTTCATT--CTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * *
963739 AAAGTCTGCCTATCGGCTTTGACTCAAGAGACTTTTTTTGCCCTT
1 -AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* ** * * * ** * * ***
963784 -TGTCTGCCCGTTGGCTTAGAACCGGGATACCTCTT-TATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * * ** *
963825 TTGTCTGCCCT-TTGGCTTAGACTCGT-GAGATTTC-TCTATCATT
1 AAGTCTG-CCTATCGGCTTTGAC-CCTAGAGACTTCTTC-GCCCTT
* * * * * * ** *
963868 -TGTTTGCCCATCGACTTAGA-CCTGGGAGACTTC-TCTATCTTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTC-GCCCTT
* * * ** * * * *
963910 TA-TTTGCCCATCAACTTTGACCCAAAAGAC-TCTATTGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
* * ** * * *** *
963952 CA-TCT-ACTCATCGGCTTAAACCCGAGGGA-TTGCTT-TATCTC
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTT-CTTCGCCCTT
* * ** * *
963993 ATGTCT-CCTTGTCAACTTTGACCCTGGGGACTTCTTAC-CCCTT
1 AAGTCTGCC-TATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * *
964036 AAGTCT-ACTGGTCGACTTTGACCCTGGAGACTTCTTC-CCTTTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * * * *
964079 AAGTTTGCTTATCCGTTTTGA-CCT-GCAAACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
* * * * *
964121 AAGTCTGTCTGTCGGCTTTGACCTTGGAGACTTTGTTC-CCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* * * *
964164 AAGTTTGCCTATTGGGTTTGA-CCTAG-G-----TT-ACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * ** * * ***
964199 -TGCCCGCCCGTTGGCTTAGACCC-AGGAGACCTT-TT-TATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGA-CTTCTTCGCCCTT
** * * * * * * * ** *
964240 TTGTCTACTTATTGGCTTAGACTCGAGAAACTTC-TCTATCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTC-GCCCTT
* * * * * * ***
964283 TA-CCTGCCCATCGGCTTAGACCCGAAAGACTT-TTCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * ** * * * *
964324 TTGTTTGCCCATCAACTTT-AACTTGGGAGAC-TCATTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTC-TTCGCCCTT
* * * ** * * ** *** *
964367 TA-TCTATCC-GTCGGCTTAAACCCGAAAGACGGCTT-TATCTC
1 AAGTCT-GCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
964408 AAGTCTACTTGTCGGCTTTGACCCTGGAGAGTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ** * * * * * *
964451 TAGTCCACCTGTCGGCTTTGACCTTGGAGATTTTTTCGTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
964494 CAGTCTGCCTGTTGGCTTTGACCCTAGAAACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* *
964537 AAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCTTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
964580 AAGTCTGCCTATCGGCTTTCACCCTTGAAACTTCTTCGCACTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
964623 TAGTCTGCCTGTCGGCTTTGGCCTTAGAGACTTCTTC-CCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * *
964666 AAATCTGCCTATTGGCTTTGACCTTACAGACTTCTTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
964709 ATGTCTGTCTGTCGGCTTTGATCCTAGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* *
964752 AAGTCTACCTATCGGCTTTAACCCTAGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
964795 AAGTCTGCCTGCTAGG-TTTGACCATATAGACTTCTTCGTCCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * **
964838 AAGTCTGCCTGTCAGCTTTGACCCTA-ACACTTCGTTC-TTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * ****
964880 AAGTCTGCTTTTCGGCTTTGA-CCTAAGAGACTTTTTTTAATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGAC-TTCTTCGCCCTT
* * * * * * ***
964924 -TGTCTTCCCATCGG-TTTAGACCCGAGTGACCTCTT-TATCTT
1 AAGTCTGCCTATCGGCTTT-GACCCTAGAGACTTCTTCGCCCTT
** * * * ***
964965 TTGT-TAG--TAGTCGGCTTAGA-CTTGGGAGAC-T-TTCTAATCTT
1 AAGTCT-GCCTA-TCGGCTTTGACCCT-AGAGACTTCTTC-GCCCTT
** * * * ***
965006 TTGTCTGCCTATCAGCTTTGA-CTTGGGAGACTTC-TCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
** ** ** * * * *
965048 TTGTCTGCCCGTCAACTTTGACCCGAGATACTACTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *** *** ** * *
965091 -CGTC-GACCCATCGGCTAAAACTGGAGAGAC-TGATC-CATCTC
1 AAGTCTG-CCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * * *
965132 AAGTTTGCC-AGTCGACTTTGACCTTGGAGACTTCTTTGCCC-T
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * *
965174 AAGTTTGCATGTCGACTTTAACCTTGGAGACTTCTTTGCCC-T
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
965216 AAGTCTGCATGTTGACTTTGACCTTGGAGACTTCTTC-CTTCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC--CCTT
* * * * * *
965260 ATGTCTGCCTGTCGACTTTGAGCCTAGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
965303 AAGTCTGCCCATCGACTTTGACCCTAGAGACTTTTTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* *
965346 AAGTCTGCCTATCAGCTTT-A-ACTAGAAGACTT-TTCTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTC--GCCCTT
* * * * * * * ** *
965389 -TGTCTGCCTGTAGGCTTAGATCCGAGAGACCTC-TCTATCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTC-GCCCTT
* * * * * * * * ***
965431 TA-TTTGCTCGA-CAGCTTAGACTCGAGGGACTTCTAT--TTTTT
1 AAGTCTGC-CTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
** * ** * * * * ***
965472 TTGTCAGCCCGTCGGC-TTAAACTTGAGAGACCT-TTCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
** * ** * *
965514 TTGTCTGCCTCTCAACTTTGA-CCTGAGAAAC-TCTATTG-CCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCT-TCGCCCTT
** * * * * * * ** *
965556 TTGTCTACCCATCGGC-TTAATCCTGGGAGACTACTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * * * * *
965598 AAGTCTGCCTGTCAG-TTTTAACCTAGGAGACTTCTTTGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
* * * * *
965641 AAGTCTGCCTATCGACTTTGATCGTAAAGACTT-TGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
* * ** * * *
965684 AAGTCTACCTGTCAACTTTCACCCTAGAGACTTCTACCCTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * * *
965728 AAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTCTTCGTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * * * *
965771 AAGTTTGCCTGTTGGCCTGGACCTTGGGGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
965814 AAGTTTGCCTGTCGGCTTTGACCCTGGAGACTTC-TCCCCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * *
965857 TAGTCTGCCTGTTGGCTTTGACCCTGGAGATTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
965900 TAGTCTGCCTGTCGGCTTTGA-CCTCGAAAACTTTTTTGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
* * *
965943 AAGTCTGCTTGTCGGCTTTGACCCTAGATACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
965986 AAGTTTGCCTGTTGGCTTTTACCTTAGAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
966029 TAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * * * *
966072 AAGT-TCGCCTATCGATTTTCACCTTGGAGGCTTCTTCACCTTTTT
1 AAGTCT-GCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC--CTT
* * *
966117 CAGTCTGCCTATCGGCTTTGACCCTAGAGACTTTTTC-CCTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * * *
966160 AAGTCTACTTATTGGCTTTGACCCTAGAAACTACTTCCCCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * *
966204 AAGTTTGCCTGTTGGCTTTGA-CCTGAGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * *
966247 AAGTCTGCCTATCGACTTTGACACTGGAGACTTCATTC-CCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* ** * ** * * **
966290 AAGTTTGTTTGTTAGCTTTGA-CTTAGGAGATTTTCTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGA-CTTCTTCGCCCTT
* * * * * * * **
966334 TA-TCT-TCTCGTCGGGTTAGACCCCAGAGACCTC-TCTACCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * * * * ***
966375 TTGCCTGTC-GTCGGCTTAGA-CTTGGGAGACTT-TTCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
** * * * ** *
966416 TTGTCTGCCTATTGGCTTAGA-CCTAGGAGACTT-ATCTATCATT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACTTCTTC-GCCCTT
* * * * * **
966459 -TGTCTGCAC-GTCAGCTTTGA-CCTGGGATACTTCTTTACCCTT
1 AAGTCTGC-CTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * * ** ** * ** *
966501 -CGTCTACCCATCGGCTTAAACCCGGGAGACTGCTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
966542 ATGTCTGCCTGTCGACTTTGACACTAGAGACTTCTTAC-CCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * *
966585 AAGTCTGCTTCTCGACTTTAACCCTAGAGACTTCTTCCCCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * ** * * *
966629 AAGTTTGCCTGTC-ATTTTGACCCT-GCAGA-TTTTCTCACCCCT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCT-TCGCCCTT
* ** *
966671 AAGTCTGCCTGTCAACTTTGACCCTAGAGACTTCATTC-CTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * * * * * * * *
966714 AAGTCTACTTGTTGACTTCGACACAAAAGACTTTTTTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* * * * ***
966758 -TGTCTGCCTGTTGGCTTAGA-CCTGAGAGAC--CATTCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTC-TTCGCCCTT
** * * * ***
966799 TTGTCTGCCTGTCAGCTTAT-A-CTTGAGAGACTTC-TCTATCTT
1 AAGTCTGCCTATCGGCTT-TGACCCT-AGAGACTTCTTCGCCCTT
** * * * * * * ** *
966841 TTGTTTGCCCACCGGCTTAGACTCGAGAGACTTC-TCTATCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTC-GCCCTT
* * * ***
966884 TA-TCTGCTCGT-T-AGCTTTGA--CTAGGGAAACTTCTTTAACCTT
1 AAGTCTGC-C-TATCGGCTTTGACCCTA--GAGACTTCTTCGCCCTT
* ** * * ** * * ** *
966926 -TGTCTATCTGTTGGCTTAAACCCGAGAGACTACTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * ****
966967 AAGTCTGCTTATCGGCTTTGACCTTAAAGACTTCTTCATAGTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * * *
967010 TAGTCTACTTATCGGCTTTGACCCTGGAAAATTTTTTGCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * ** * ** *
967053 TTGTCATTCATCTACCCATTGGCTTAAACCC-ATGAGACTGCTTC-ATCTC
1 AAGTC-TGC--CT----ATCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
* * ** * * * * *
967102 GAGACTGGTTGTCGGCTTTGAGCTTAGAAACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * *
967145 TAGTCTACCTGTCGACTTTAACCCTAAAGATTTCTTCGCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
967188 TAGTCTGCCTGTCGGCTTTGACCCTAAAGACTTTTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
967231 AAGTTTGCCTGTTGGGTTTGACCCCAGATACTTCTTCGCCC-T
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * * *
967273 AAGT-T--CGAGTGCCGAATTCACCCTAGAGACTTTTTTGCCCGTT
1 AAGTCTGCCTA-T-CGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* *
967316 -AGAT-TGCCTATCGGCTTTGACCCTAGAGACTTTTTTGCCCTT
1 AAG-TCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
967358 AAGTTTGCCTATCGGCTTTCACCCT-GAAGACTTCTTCGCACTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
* * * * * * *
967401 TAGTATGCTTATCGGCTTTGACCCCAAAGACTTATTC-CTCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * *
967444 AAGTCTGCCTATCGGCTTTGATCCTGGAGACTTTTTTTC-CCCTA
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC--TTCTTCGCCCTT
* * * *
967488 AAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
967531 AAGTCTACCTATCAGCTTTGACCCTGGAGATTTCGTTC-TCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * * **
967574 AAGTCTGCTTGTCAGCTTTAACCC-ATGAAACTTTCTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGAC-TTCTTCGCCCTT
* * * * * * * * * **
967618 -TGACT-TCTCGTCAGCCTAGACCCGAGAGACCT-TTCTACCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * * * ***
967659 TTG-CATGAC-ATTGGCTTAGATCC-AGGAGACATC-TCTATCTT
1 AAGTC-TGCCTATCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
** * * * ****
967700 TTGTCTACCTGTCGGCTTAGACCC-AGGAGACTTC-TCTATTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACTTCTTC-GCCCTT
* * * * * *
967743 TA-TCTGCCCATCAGCTCTGACCC-AG-GGCATTCTTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTC-TTCGCCCTT
* * * ** ** ** * * * *
967785 -CGTTTACCCGTTAGCTTAAACTCGAGAGA-TTGCTTCATCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTT-CTTC-GCCCTT
* * * * *
967828 --GTCTGCCTGTCGACTTTTACACT-GAAGGCTTCTTCCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTT-CGCCCTT
* * * * * * *
967870 AAGTTTGCTTATAGGCTTTAACCTTGGAGACTTCTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * ** * * *
967914 AAGTTTGCCTGTCAACTTTGACCCTGGAGACTGCCTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
967957 AAATCTGTCTGTCGGCTTTGACCTTGGAAACTTCATC-CCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * * *
968000 AAGTCTGCCTGTCAGCTTCGACCCTTGAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
968043 AAGTCTGCC-AGACGGCTTTGACCTTATAGACTTCTTCCCCCCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * ** * * * *
968087 AAGTCTGCTTGTTAGCTTTTACCTTGGAGACTTCATC-CCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * * * * * *
968130 AAGTCTGCCAATTGGGTTTAACCTTGGAAACTTCATC-CCTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * * * *
968173 AAGTTTTCCTGTCAGCTTTCA-CCTAGTAGACTTC-GCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
** * * * *
968215 AAGTCTGCC-AGTTAGTTTTGACCCTGGAGACTTTTTC-CCCCT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
968257 AAGTCTACCTATCAGCTTTCA-CCTAGAGACATCTTCCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT--CGCCCTT
* * * * * * *
968301 AAGTTTGCCTGTCAGCTTTGACCTTGGATACTTCTTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * * *
968344 AAGTATGCCAACCGACTTTGACCCTGGAAACTTCGTCCCCCTG
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
968387 AAGTCTACTTATTGGCTTTGA-CCTTGAGACATCTTCCCCCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
968429 AAGTCTGGCTGTCGACTTTGACCCTGGAGACTTCCTT-ACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTT-CTTCGCCCTT
* * * * * *
968472 AAGTCTGCCTGTCGACTTTGA-CCTTGAAAGCTTCGTCTCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGA-CTTCTTCGCCCTT
* * ** * * *
968515 TAGTCTGCCTGTCAACTTTGACTCTGGAGACTT-TGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
* * * *
968558 AAGTCTG-CTAATCAGCTTTGACCTTGGAGACTTCTTCCCCCTTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * * * *
968602 AAGTCAGCTTGTCGGCTTTCACACTAGAGACTTCATCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * * *
968645 AAGTTTGCCAATCGATTTTGACCCT-GAAAACTTTTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTT-CGCCCTT
* * * * * **
968689 AGGTCTACCTGTCAGCTTTGACCCTAGAGACATT-TTTGCTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* * * * **
968732 AAGTCTG-CTAGTCGGCTTTGACCCTGGAAAATTTTTTACCCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
968775 TAGTCTGCTTGTCAGCTTTGACCCTGGA-ATTTTCTTCGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGA-CTTCTTCGCCCTT
* **
968818 AAGTCTGCCTGTCGGCTTTGATGCTAGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * *
968861 AAGTCACCCTGTTGGCTTT--CCCTTTGGAGACTTCTTCTCCCTT
1 AAGTCTGCCTATCGGCTTTGACCC--TAGAGACTTCTTCGCCCTT
* ** * * *
968904 TAGTCTGCCCGTTGGCTTTAACCTTAGAGACTTCTTC-CCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * * * *
968947 AGGTCTGTCGATCGACTTTCACCCTGGAGACTTCTTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ** * * * *
968990 AAGTTTGTGTGTCGGCTTTGACCCTAAAGACTTCCTCTCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
969033 AAGTCTACCTGTCGACTTTGACCTTGGAGACTTTGTTC-CCCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTTCGCCCTT
* * * *
969076 AAGTCTGCTTATCGGTTTTGA-CCTAGGATACTATCATTAC-CCATT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACT-TC-TT-CGCCCTT
* ** * * ** *
969121 --GTCTTCCCGTC-GATTTAGACCCTAGAGACCTC-TCTAACATT
1 AAGTCTGCCTATCGGCTTT-GACCCTAGAGACTTCTTC-GCCCTT
* ** * * * * ***
969162 TA-TCTATC-GTCGGCTTAGA-CTTGAGAGGCTTC-TCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
** * * * * ** ***
969202 TTGTCTACCCATTGGCTTAGACCCGGGAGACTTC-TCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * ** * * * **
969244 TTGTTTGCCCATCAACTTTGA-CTTGGGATAC-TCTTTTTCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTC-TTCGCCCTT
* * * * * * * ** ** *
969287 -CGTCTACCCATTGGC-TTAAACCTGGGAGACCGCTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * * * *
969328 AAGTTTGCCTATCGACTTTGATCTTGGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * *
969371 AAGTCTTCCTGTTAGCTTTGACTCTAGAGACTTCATC-CCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
*
969414 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
*
969457 AAGT-TAGCCTATCGGCTTTGACCTTGGAGACAAGACTT-TGTC-CCCGTT
1 AAGTCT-GCCTATCGGCTTTGACCCT--AG---AGACTTCT-TCGCCC-TT
* * * ***
969505 AAGTCTG-CTCATCGGCTTAGACCCGAAAGACTTC-TCTATCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
*** * ** ** * * ***
969547 TTCTCTACCCGTCAACTTTGA-CCTGAGAGACTTTTTTGTTATT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * * ** * * *
969590 -CGTCTACCCATCGGCTTAAACCC-ATGAGACTGCTTC-CTCTC
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
* * * *
969631 AAGTCTGCCAATCGACTTTGACCTTAGAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
969674 TAGTCTACCTGTCGACTTTAACCCTAAAGATTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
969717 TAGTCTGTCTGTCGGCTTTGACCCTGGAAACTTTTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
969760 AAGTTTGCTTGTTGGCTTTAATCCTAGATACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ** * * * *
969803 AAGT-T-CAC-ATGCCGAATTCACCCTGGAGACTTTTTTGCCCTT
1 AAGTCTGC-CTAT-CGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
969845 TAGAT-TACCTGTCGACTTTGACCCTAGAGACTTGTTCGCCCTT
1 AAG-TCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
969888 AAGTCTGCCTATCGG-TATTCACCCT-GAAGAATTCTTCGTCCTT
1 AAGTCTGCCTATCGGCT-TTGACCCTAG-AGACTTCTTCGCCCTT
* * * * * *** *
969931 TAGTATGCTTATCGGCGTTGACCCTAAAGACTTCTTTTTCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * ** *
969974 TAGTCTGCCTATCGGCTTTGATCTTGGAGACTTATTTTCCTCTA
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC-CTT
* * * * * *
970018 AAGTCTGCCTATCGACTTTGAGCTTGGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * **
970061 TAGTCTACCTATTAGCTTTGACCCTGGAGACTTCATTC-CTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * * **
970104 AAGTCTGCTTATCGACTTT-AACCTATGAAACTTTTTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGAC-TTCTTCGCCCTT
* * * * * * * **
970148 -TGTCT-TCTCGTCGGCCTAGACCCAAGAGACCT-TTCTACCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * ** ** * ***
970189 TTG-CATGTCGCT-GGCTTAAACCC-AGGAGACATC-TCTATCTT
1 AAGTC-TGCCTATCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
** ** * * * ***
970230 TTGTCTGCCCGTCGGCTTAGACCCAAGAAAC-T-TTCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * * *
970271 TTGTCTGCCCATCAGCTCTGA-CCTAG-GGCATTCCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TT-CTTCGCCCTT
* * ** * * * * ** *
970314 CA-TCTACCCGTCAG-TTTAAACTTGAGAGACAGCTTCATG-TCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTC--GCCCTT
* * * *
970357 --GTCTGCTTGTCGGCTTTGACACT-GAAGACTTCTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTT-CGCCCTT
* * * * * * *
970399 AAGTTTGCCTGTAGGCTTTAACCTTGGAGACTTCTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * ** * * * *
970443 AAGTTTGCCTGTTAGCTTTGACCTTGGACACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * ** *
970486 AAATCTGCCTGTCAGCTTTGACCTTGGAAACTTAATC-CTTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * *
970529 AAGTCTGCCTGTCAGCTTTGACCCT-GAAGACTTCGTC-CCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCC-TT
* * *
970572 AAGTTTG-CTAGTCGGCTTTGACCTTAGAGACTTCTTCCCCCCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * * * *
970616 AAGTCTGCTTGTCAGCTTTTACACTAGAGACTTCATCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
970659 AAGTCTGCCAATCGGGTTTGACCTTGGAAAATTCATC-CCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * *
970702 AAGTCTGCCTATCAGCTTTCA-CCTTGAAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
* * * * * *
970745 AAGTCTGCC-AGTCAGTTTTGACCTTGGAGACTTCTGC-CCCCT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
970787 AAGTCTACCTGTCAGCTTTGA-CCT-GAAGACATCTTCCCCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCCC-TT
* * * * * *
970830 AAGTCTGCCTGTCGACTTTGACCCTAGATACTTCGTCCCCCTG
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * * * *
970873 AAGTCTGCTTGTCAACTTTGACCTTAGAGACATCTTCCCCCCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * * *
970917 AAGTCT-CGCTGTCGACTTTGACCTTGGAGACTTCCTCACCCTT
1 AAGTCTGC-CTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
970960 AAGTCTGCCTGTCGGTTTTGACCGT-GAAAACTTCATC-CCTTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTTCGCC-CTT
* ** * * *
971003 AAGTCTGCCTATCAGCTTTGACTTTGGAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
971046 AAGTCTGCC-AGTCGGCTTTGACCTTTGAGACTTTTTCCCCCTTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * * * * *
971090 AAGTCAGCTTGTCGGCTTTCACACTAAAGACTTCGTCTCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
971133 AAGTTTGCCAATCGGCTTTGA-CCT-GAAAACTTTTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAG-AGACTTCTT-CGCCCTT
* * * *
971176 AAGTTTGCCTATCGGCTTTGACCCTAGAGACTTTTTTGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * *
971219 AAGTCTG-CTAGTCTACTTTGACCTTGGAAACTTCGTC-CCCTTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
** * * * * * *
971262 AAGTCTGTTTGTCGGCTTTGACCTTGGAGACTT-TGCCCCCCTG
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
* * * * * * *
971305 AAATCTACCTGT-GGACTTTGACCTTGGGGACTTCTTC-CTCATT
1 AAGTCTGCCTATCGG-CTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * * * * *
971348 AAGTCGGCCTGTCGGCTTTGACCCTGGAAAATTTTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * * *
971391 TAGTCTGCTTGTCAGCTTTGACCGTGGAAATTTTTTC-CCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * ** * *
971434 AAGTCTGCCTGTCAGCGTTGATGCTAGAGACTTTTTCG-CTTGT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCT-T
* * *
971477 AAGTC-ACCTTGTCGGCTTT--CCCATTTGAGACTTC-T-----TT
1 AAGTCTGCC-TATCGGCTTTGACCC--TAGAGACTTCTTCGCCCTT
* * *
971514 ATAGTTTGCCTATCGGCTTTGACCTTAGAGACTTTTTC-CCCTTT
1 A-AGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * * *
971558 AAGTCTG-TTGATCAGCTTTAACCCTGGAGACTTCTTTC-CGCTT
1 AAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * * *
971601 AAGT-TTCCGTGTCGACTTTGACCCT-GAAAACTTCCTCTCCCTT
1 AAGTCTGCC-TATCGGCTTTGACCCTAG-AGACTTCTTCGCCCTT
* *
971644 AAGTTTG--T-T-GGCTTTGACCCTAGAGACTTCGTTC-CCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * * *
971683 AAATCTGCTTGTCGGCTTTCACCCTGGAGACTTCGTTC-CCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * * * **
971726 AAATCTGCTTGTCGGCTTTGA-CCTAGGATACTATCTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACT-TCTTCGCCCTT
* * ** * * * ***
971770 -TGTCTTCCCGTCGGCTTAGACCCGAGAGACCTC-TCTAACTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** ** * * * ** * ***
971811 TTGTCTATC-GTCGACTTCGACTTTAGGGACTTC-TCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * *** ***
971852 TTGTCTACCTGTCGGCTTAGACCAGGGAGACTTC-TCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * ** * * * * *
971894 TTGTTTGCCAATCAACTTTGA-CTTGGGATACTCCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * * * * ** * * ** *
971937 -CGTATACCTGTCGACTTAAACCCGAGAGA-TCGCTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACT-TCTTCGCCCTT
* * * * * * *
971978 AAGTTTGCCTTTTGACTTTGACCTTGGAGACTTCTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
972021 AAGTTTGCTTGTCGGCTTTGACTCTAGAGACTT-TGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
* * * *
972064 AAGTCTGCCTATCGACTTTGACCATGGAGACTTCTTCGCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
972107 AAGTCAGCCTATTGGCTTTGACCCTGGAGACTTCATCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ***
972150 AAGTCTGCC-AGTCGGCTTAGACCC-AGGAGACTTC-TCTATCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
*** * ** ** * * *
972192 TTCTCTACCCGTCAACTTTGA-CTTGAGAGACTTCTTTGTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCTTCGCCCTT
* * ** ** * * ** *
972235 -CGTCTACCCGTCGGCTTAAACTC-ATGAGACTGCTTC-ATCTC
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGACTTCTTCGCCCTT
* * *
972276 AAGTCTGCCTATCGGCTTTAACCTTAGAAACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * * *
972319 TAGTCTACTTGTCGACTTTAACCCTAGAGATTTCTTTGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * ** * * *
972362 TGGTCTACATGCCGGCTTTGACCTTGGAAACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
972405 AAGTTTACCTGTCGACTTTGACCCTAGATACTTCTTCGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* ** * * * * * *
972448 AAGT-TCGCATGCCGG-ATTCACCTTGGAGACTTTTTTGCCCTT
1 AAGTCT-GCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
972490 TAGAT-TACCTATCGGCTTTGACCTTAGAGACTTCTTCGCTCTT
1 AAG-TCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
972533 AAGTCTGCCAATCGGCTTTCACCCTAAAGACTTCTTCGTCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
972576 TAGTTTG-CTAGTCGACTTTGACCTTAGAGATTTCTTC-CTCTTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * *
972619 AAGTCTGCCTATCGGCTTTGATCCTGGATACTT-TCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGCCCTT
** *
972662 AAGTCTGCCTATCAACTTTGACCCTAGAGACTTCATTC-CCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
** * * * **
972705 AAGTCTGTTTATCAGCTTTAACTC-ATGAGACTTTCTTTACCCTCT
1 AAGTCTGCCTATCGGCTTTGACCCTA-GAGAC-TTCTTCGCCCT-T
* * * * * **
972750 -A-TCTTCTCGT-T-GGCTTAGACCCGAAAGACCTC-TCTACCTT
1 AAGTCTGC-C-TATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** * * * * ** ***
972790 TTGTTTGTC-GTCGG-TTTAGACTCGGGAGACTTCTT-TATCTT
1 AAGTCTGCCTATCGGCTTT-GACCCTAGAGACTTCTTCGCCCTT
** * * * * ***
972831 TTGTCTGCCCATTGGCTTAGACCCGAGAGACTT-TTCTATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
** ** * * * *
972873 TTGTCTGCCTATTAGCTCTGACCCGAG-GTGC-TCTTTTGCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAG-ACTTC-TTCGCCCTT
* * ** * ** * * * * *
972916 -CGTCTACCCGTCAGCTTAAACTCGAGAGACTACTTCATCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTC-GCCCTT
* * * * *
972959 --GTCTACCTGTCGGCTTTGACACTAAAGACTTCTTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * * *
973001 AAGTCTGCTTGTAGGCTTTGACCTTGGAAACTTCTTC-CCTTCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCC--CTT
* * ** * * *
973045 AAGTCTGCCTGTCAGCTTTGACTTTGGAGACTTCCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
973088 AAATCTGCCTGTCGACTTTGACCTTGGAAACTT-TGTC-CATCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCT-TCGC-CCTT
* * * * * *
973131 AAGTTTGCCTGTCAGCTTTGCCCCCTAGAGACTTCATCCCCCTT
1 AAGTCTGCCTATCGGCTTTG-ACCCTAGAGACTTCTTCGCCCTT
* * * * * *
973175 AAGTCTG-CTAGTTGGCTTTGACCTTGGAAACTTTTTCCCCCCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
* * * * * *
973219 AAGTCTGCGTGTCAGCTTTTACCCTAGAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * *
973262 AAGTCTACCAATCGAG-TTTGACCATTGAAACTTCATCCCCCTT
1 AAGTCTGCCTATCG-GCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * * * * *
973305 AAGTTTGCCTGTCAACTTTCACCTTGGAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
973348 AAGTTTTCC-AGTCGGCTTTGACCCTAGAGACTTCTTC-CCCCT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
973390 AAGTTTGCTTGTCAGCTTTGA-CCTGGAGACATT-TTCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGAC-TTCTT-CGCCCTT
* * * * * * **
973433 AAGTTTGCCTCTTGGCTTTGACCCTGGATACTTTTTTACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * * *
973476 AAGTATGCC-AGCCAGCTTTGACCCTGGAAACTTCGTCCCCCTG
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * ** * * * *
973519 AAGTCTGCTTGTCAACTTTGACCTTGGAGACTTCTTCCTCCCTC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTT-CGCCCTT
** * * * *
973563 AAGTCTGGCC-ATCAACTTTGATCCTGGAGACTTCCTCACCCTT
1 AAGTCT-GCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
973606 AAGTCTGCTTATCGACTTTGA-CCTGAGAAACTT-TGTC-CCTCTT
1 AAGTCTGCCTATCGGCTTTGACCCT-AGAGACTTCT-TCGCC-CTT
* ** * * * *
973649 AAGTCTGCCTGTTAGCTTTGACTCTGGAGACTTCGTCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * *
973692 AAGTTTGCC-AGTCGGCTTTGACCTTGGAGACTTCTTCCCCCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * * ** *
973735 AAGTCAGCTTGTCAGCTTTTACACTAGAGACTTCGCCCCCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * *
973778 ATGTCTG-CTACTCGGCTTTGACCCT-GAAAACTTTTTC-CCTCTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAG-AGACTTCTTCGCC-CTT
* * * * * * *
973821 AAATCTACCTGTCGACTTTGACCCTAGAGACTTTTTTGCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
973864 AAGTCTG-CTAGTCGGCTTTGACCTTGGAAACTTCGTCTCCTTT
1 AAGTCTGCCTA-TCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * *
973907 AAGTCTGCCTATCGGATTTTACCATAGAGACTTC-GCCCCCTTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC-TT
* * * *
973950 AAGTCTACCTGTCGGCTTTGACCTTCGAGACTTCTTC-CCCTATT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCC--TT
* * *
973994 AAGTCTGCCTGTCGGCTTTGACCCTGGA-AGCTT-TCTCACCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGA-CTTCT-TCGCCCTT
* * * * **
974037 AAGTCTCCCTATCAGCTTTGACCCTAAAGACTTCTTTGCCCAA
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
* * * * * *
974080 AAGTTTACCTATCGGCTTTGACCTTGGAGACTCCTTC-CTACTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGC-CCTT
* * * * * *
974123 ATGTCTACCTACCGACTTTAACCTTAGAGACTTCATTC-CCCTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTC-TTCGCCCTT
* * *
974166 AAGTCTGCCTATTGGCTTAGACCCAAGAGACTT
1 AAGTCTGCCTATCGGCTTTGACCCTAGAGACTT
974199 TCTTTACCCT
Statistics
Matches: 8893, Mismatches: 2651, Indels: 1259
0.69 0.21 0.10
Matches are distributed among these distances:
34 13 0.00
35 10 0.00
36 1 0.00
37 2 0.00
38 22 0.00
39 67 0.01
40 44 0.00
41 479 0.05
42 1887 0.21
43 5094 0.57
44 1067 0.12
45 106 0.01
46 16 0.00
47 20 0.00
48 41 0.00
49 7 0.00
50 17 0.00
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.36
Consensus pattern (43 bp):
AAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
Found at i:962644 original size:39 final size:39
Alignment explanation
Indices: 962568--962644 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
962558 TGACTTGAAA
** **
962568 GACTTCTCTACCTTTTGTCTGCCTGTTGGCTTAGACCCG
1 GACTTCTCTACCTTTTGTCTGCCCATTAACTTAGACCCG
*
962607 GACTTCTCTACCTTTTGTCTGCCCATTAACTTTGACCC
1 GACTTCTCTACCTTTTGTCTGCCCATTAACTTAGACCC
962645 AAGATATCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.13, C:0.32, G:0.16, T:0.39
Consensus pattern (39 bp):
GACTTCTCTACCTTTTGTCTGCCCATTAACTTAGACCCG
Found at i:963019 original size:128 final size:128
Alignment explanation
Indices: 962705--963332 Score: 530
Period size: 130 Copynumber: 4.8 Consensus size: 128
962695 ACTTCATCTC
* * * * * *
962705 AAGTCTCCCGGTCAACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCTTGTTGGTTTTGAC
1 AAGTCTACCTGTCGACTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCTTGTTGGCTTTGAC
* * * * * *
962770 CCTGGAGACTTCGTCCCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTCTTCCCCCCTT
66 CCTAGAGACTTC-TTCTCCTTAAGTCTGCTTGTCAGCTTTGACCATGGAGACTTCAT-CCCCCTT
* * *
962835 AAGTCTGCATGTCGACTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCCTGTTGGCTTTGAC
1 AAGTCTACCTGTCGACTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCTTGTTGGCTTTGAC
* * *
962900 CCTAGAGACTTCTTCGTCCTTAAGTTTGCTTGTCAACTTTGACCATGGAGATTTCAT-CCCCTT
66 CCTAGAGACTTCTTC-TCCTTAAGTCTGCTTGTCAGCTTTGACCATGGAGACTTCATCCCCCTT
*
962963 AAGTCTACCTGTCGACTTTGAGCTTGGAGACTTCCTCACCCTTAAGTCTGCTTGTTGGCTTTGAC
1 AAGTCTACCTGTCGACTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCTTGTTGGCTTTGAC
* * * ** * *
963028 GCTAGAGACTTCTTCTCCCTTAAGTCTGTTTGTCAGCTTTGACCGTAAAGACTTCTTCCCTCTT
66 CCTAGAGACTTCTTCT-CCTTAAGTCTGCTTGTCAGCTTTGACCATGGAGACTTCATCCCCCTT
* * * * * * * ** *
963092 ATGTTTGCCCGTCGATTTTAACCTCGGAGACTTTGTTC-CCCATAAGTGTCTGCTTGTTGGCTTT
1 AAGTCTACCTGTCGACTTTGACCTTGGAGAC-TTCCTCACCCTTAA--GTCTGCTTGTTGGCTTT
* * * * * * * * ** * **
963156 G-CACCTGGTGACTTCTTCCCCTCTTAAGTTTGCCTATC-GAATTTGACCCTACAGACTTCCTTG
63 GAC-CCTAGAGACTTCTT-CTC-CTTAAGTCTGCTTGTCAG-CTTTGACCATGGAGACTTCATCC
963219 CCCTT
124 CCCTT
* * * * ** * *
963224 AAGTCTGCCTGTC-AGCTTTGACCCTAGAGACTTCTTTGCCCTTAAGTCTGCCTGTCGGCTTTGA
1 AAGTCTACCTGTCGA-CTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCTTGTTGGCTTTGA
* * * * *
963288 CTCGAGAGATTTCTTC-CCTTTTTAGTCTGCTTGTCGGCTTTGACC
65 CCCTAGAGACTTCTTCTCC--TTAAGTCTGCTTGTCAGCTTTGACC
963333 CTACAGACTT
Statistics
Matches: 402, Mismatches: 80, Indels: 33
0.78 0.16 0.06
Matches are distributed among these distances:
127 2 0.00
128 114 0.28
129 55 0.14
130 133 0.33
131 37 0.09
132 61 0.15
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.37
Consensus pattern (128 bp):
AAGTCTACCTGTCGACTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCTTGTTGGCTTTGAC
CCTAGAGACTTCTTCTCCTTAAGTCTGCTTGTCAGCTTTGACCATGGAGACTTCATCCCCCTT
Found at i:963343 original size:218 final size:213
Alignment explanation
Indices: 962715--963375 Score: 571
Period size: 218 Copynumber: 3.1 Consensus size: 213
962705 AAGTCTCCCG
* * * * * * ** **
962715 GTCAACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCTTGTTGGTTTTGACCCTGGAGACT
1 GTCAACTTTGACCATGGAGACTTCATC-CCCTTAAGTCTACCTATCGAATTTGACCCTACAGACT
* * * * *
962780 TCGTCCCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTCTTCCCCCCTTAAGTCTGCAT
65 TCCTCACCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTT-CTCCCTTAAGTCTGCAT
* * * * * * *
962845 GTCGACTTTGACCTTG-GAGACTTCCTCACCCTTAAGTCTGCCTGTTGGCTTTGACCCTAGAGAC
129 GTCGGCTTTGA-CTCGAGAGACTTCTTC-CCTTTTAGTCTGCCTGTCGGCTTTGACCCTACAGAC
* *
962909 -TTCTTCGTCCTTAAGTTTGCTT
192 TTTGTTC-CCCTTAAGTTTGCTT
* * * * * **
962931 GTCAACTTTGACCATGGAGATTTCATCCCCTTAAGTCTACCTGTCGACTTTGAGCTTGGAGACTT
1 GTCAACTTTGACCATGGAGACTTCATCCCCTTAAGTCTACCTATCGAATTTGACCCTACAGACTT
* ** * **
962996 CCTCACCCTTAAGTCTGCTTGTTGGCTTTGACGCTAGAGACTTCTTCTCCCTTAAGTCTGTTTGT
66 CCTCACCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTCTCCCTTAAGTCTGCATGT
* * * * * * * *
963061 CAGCTTTGAC-CGTAAAGACTTCTTCCCTCTTATGTTTGCCCGTC-GATTTTAACCT-CGGAGAC
131 CGGCTTTGACTCG-AGAGACTTCTTCCCTTTTA-GTCTGCCTGTCGGCTTTGACCCTAC--AGAC
*
963123 TTTGTTCCCCATAAGTGTCTGCTT
192 TTTGTTCCCCTTAAGT-T-TGCTT
*** * * * *
963147 GTTGGCTTTGCACC-TGGTGACTTCTTCCCCTCTTAAGTTTGCCTATCGAATTTGACCCTACAGA
1 GTCAACTTTG-ACCATGGAGACTTCAT-CCC-CTTAAGTCTACCTATCGAATTTGACCCTACAGA
**
963211 CTTCCTTGCCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTT-TGCCCTTAAGTCTGC
63 CTTCCTCACCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTCT-CCCTTAAGTCTGC
* * *
963275 CTGTCGGCTTTGACTCGAGAGATTTCTTCCCTTTTTAGTCTGCTTGTCGGCTTTGACCCTACAGA
127 ATGTCGGCTTTGACTCGAGAGACTTCTTCCC-TTTTAGTCTGCCTGTCGGCTTTGACCCTACAGA
* *
963340 CTTTGTTCCCCTTAAGTCTGCCT
191 CTTTGTTCCCCTTAAGTTTGCTT
* *
963363 ATCACCTTTGACC
1 GTCAACTTTGACC
963376 CAAGAGACTT
Statistics
Matches: 351, Mismatches: 78, Indels: 33
0.76 0.17 0.07
Matches are distributed among these distances:
212 1 0.00
213 13 0.04
214 51 0.15
215 78 0.22
216 55 0.16
217 7 0.02
218 131 0.37
219 14 0.04
220 1 0.00
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.37
Consensus pattern (213 bp):
GTCAACTTTGACCATGGAGACTTCATCCCCTTAAGTCTACCTATCGAATTTGACCCTACAGACTT
CCTCACCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTCTCCCTTAAGTCTGCATGT
CGGCTTTGACTCGAGAGACTTCTTCCCTTTTAGTCTGCCTGTCGGCTTTGACCCTACAGACTTTG
TTCCCCTTAAGTTTGCTT
Found at i:963491 original size:42 final size:41
Alignment explanation
Indices: 963395--963543 Score: 129
Period size: 42 Copynumber: 3.6 Consensus size: 41
963385 TTCTTTACCC
*
963395 TTTGTGTACCCGTCAGCTTAGACAGGGAGA-TCTCTCTATCT
1 TTTGTCTACCCGTCAGCTTAGACAGGGAGACT-TCTCTATCT
* * ** * * *
963436 TTTATTTTTCCGTCGGCTTAGATCTGGGAGACTTATCTATCT
1 TTTGTCTACCCGTCAGCTTAGA-CAGGGAGACTTCTCTATCT
* * * *
963478 TTTGTCTACCCGTCAACTTAGACCCGGTAGACTTCTCTATAT
1 TTTGTCTACCCGTCAGCTTAGA-CAGGGAGACTTCTCTATCT
* * *
963520 TTTGTCTGCTCGTCAGCTTTGACA
1 TTTGTCTACCCGTCAGCTTAGACA
963544 TCGGATACTC
Statistics
Matches: 83, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
41 18 0.22
42 64 0.77
43 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (41 bp):
TTTGTCTACCCGTCAGCTTAGACAGGGAGACTTCTCTATCT
Found at i:963870 original size:42 final size:42
Alignment explanation
Indices: 963782--963906 Score: 110
Period size: 42 Copynumber: 3.0 Consensus size: 42
963772 TTTTTTGCCC
* * *
963782 TTTGTCTGCCCGTTGGCTTAGAACCGGGATACCTCTTTATCT
1 TTTGTCTGCCCGTTGGCTTAGAACCGGGAGACCTCTCTATCA
* * **
963824 TTTGTCTGCCCTTTGGCTTAG-ACTCGTGAGATTTCTCTATCA
1 TTTGTCTGCCCGTTGGCTTAGAAC-CGGGAGACCTCTCTATCA
* * * * *
963866 TTTGTTTGCCCATCGACTTAG-ACCTGGGAGACTTCTCTATC
1 TTTGTCTGCCCGTTGGCTTAGAACC-GGGAGACCTCTCTATC
963907 TTTTATTTGC
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 3 0.04
42 65 0.96
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (42 bp):
TTTGTCTGCCCGTTGGCTTAGAACCGGGAGACCTCTCTATCA
Found at i:963916 original size:42 final size:42
Alignment explanation
Indices: 963851--963931 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
963841 TTAGACTCGT
* * *
963851 GAGATTTCTCTATCATTTGTTTGCCCATCGACTTAGACCTGG
1 GAGACTTCTCTATCATTTATTTGCCCATCAACTTAGACCTGG
* *
963893 GAGACTTCTCTATCTTTTATTTGCCCATCAACTTTGACC
1 GAGACTTCTCTATCATTTATTTGCCCATCAACTTAGACC
963932 CAAAAGACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.40
Consensus pattern (42 bp):
GAGACTTCTCTATCATTTATTTGCCCATCAACTTAGACCTGG
Found at i:963940 original size:42 final size:42
Alignment explanation
Indices: 963856--963940 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
963846 CTCGTGAGAT
* * ****
963856 TTCTCTATCATTTGTTTGCCCATCGACTTAGACCTGGGAGAC
1 TTCTCTATCATTTATTTGCCCATCAACTTAGACCCAAAAGAC
* *
963898 TTCTCTATCTTTTATTTGCCCATCAACTTTGACCCAAAAGAC
1 TTCTCTATCATTTATTTGCCCATCAACTTAGACCCAAAAGAC
963940 T
1 T
963941 CTATTGCCTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (42 bp):
TTCTCTATCATTTATTTGCCCATCAACTTAGACCCAAAAGAC
Found at i:964184 original size:85 final size:85
Alignment explanation
Indices: 964031--964187 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 85
964021 GACTTCTTAC
* * *
964031 CCCTTAAGTCTACTGGTCGACTTTGACCCTGGAGACTTCTTCCCTTTTAAGTTTGCTTATCCGTT
1 CCCTTAAGTCTACTGGTCGACTTTGACCCTGGAGACTTCTTCCCTCTTAAGTTTGCCTATCCGGT
964096 TTGACCTGCAAACTTCCTCA
66 TTGACCTGCAAACTTCCTCA
* * * * **
964116 CCCTTAAGTCTGTCT-GTCGGCTTTGACCTTGGAGACTTTGTTCCC-CTTAAGTTTGCCTATTGG
1 CCCTTAAGTCT-ACTGGTCGACTTTGACCCTGGAGAC-TTCTTCCCTCTTAAGTTTGCCTATCCG
964179 GTTTGACCT
64 GTTTGACCT
964188 AGGTTACCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 52 0.85
86 9 0.15
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.39
Consensus pattern (85 bp):
CCCTTAAGTCTACTGGTCGACTTTGACCCTGGAGACTTCTTCCCTCTTAAGTTTGCCTATCCGGT
TTGACCTGCAAACTTCCTCA
Found at i:964280 original size:42 final size:42
Alignment explanation
Indices: 964234--964336 Score: 100
Period size: 42 Copynumber: 2.5 Consensus size: 42
964224 GAGACCTTTT
** * *
964234 TATCTTTTGTCTACTTATTGGCTTAGACTCGAGAA-ACTTCTC
1 TATCTTTTGTCTACCCATCGGCTTAGACCCGA-AAGACTTCTC
** * *
964276 TATCTTTTACCTGCCCATCGGCTTAGACCCGAAAGACTTTTC
1 TATCTTTTGTCTACCCATCGGCTTAGACCCGAAAGACTTCTC
* *
964318 TATCTTTTGTTTGCCCATC
1 TATCTTTTGTCTACCCATC
964337 AACTTTAACT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.04
42 47 0.96
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (42 bp):
TATCTTTTGTCTACCCATCGGCTTAGACCCGAAAGACTTCTC
Found at i:965067 original size:42 final size:42
Alignment explanation
Indices: 964983--965069 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
964973 AGTCGGCTTA
* *
964983 GACTTGGGAGACTTTCTAATCTTTTGTCTGCCTATCAGCTTT
1 GACTTGGGAGACTTTCTAATCTTTTGTCTGCCCATCAACTTT
*
965025 GACTTGGGAGACTTCTCT-ATCTTTTGTCTGCCCGTCAACTTT
1 GACTTGGGAGACTT-TCTAATCTTTTGTCTGCCCATCAACTTT
965067 GAC
1 GAC
965070 CCGAGATACT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 38 0.93
43 3 0.07
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (42 bp):
GACTTGGGAGACTTTCTAATCTTTTGTCTGCCCATCAACTTT
Found at i:965178 original size:42 final size:42
Alignment explanation
Indices: 965132--965251 Score: 197
Period size: 42 Copynumber: 2.9 Consensus size: 42
965122 GATCCATCTC
965132 AAGTTTGCCA-GTCGACTTTGACCTTGGAGACTTCTTTGCCCT
1 AAGTTTG-CATGTCGACTTTGACCTTGGAGACTTCTTTGCCCT
*
965174 AAGTTTGCATGTCGACTTTAACCTTGGAGACTTCTTTGCCCT
1 AAGTTTGCATGTCGACTTTGACCTTGGAGACTTCTTTGCCCT
* *
965216 AAGTCTGCATGTTGACTTTGACCTTGGAGACTTCTT
1 AAGTTTGCATGTCGACTTTGACCTTGGAGACTTCTT
965252 CCTTCTTTAT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 2 0.03
42 71 0.97
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (42 bp):
AAGTTTGCATGTCGACTTTGACCTTGGAGACTTCTTTGCCCT
Found at i:965290 original size:44 final size:42
Alignment explanation
Indices: 965132--965355 Score: 157
Period size: 42 Copynumber: 5.2 Consensus size: 42
965122 GATCCATCTC
* * * * **
965132 AAGTTTGCCAGTCGACTTTGACCTTGGAGACTTCTTTGCCC-T
1 AAGTCTGCCTGTCGACTTTGACC-TAGAGACTTCCTCACCCTT
* * * * * **
965174 AAGTTTGCATGTCGACTTTAACCTTGGAGACTTCTTTGCCC-T
1 AAGTCTGCCTGTCGACTTTGACC-TAGAGACTTCCTCACCCTT
* * * * *
965216 AAGTCTGCATGTTGACTTTGACCTTGGAGACTTCTTC-CTTCTTT
1 AAGTCTGCCTGTCGACTTTGACC-TAGAGACTTCCTCAC--CCTT
*
965260 ATGTCTGCCTGTCGACTTTGAGCCTAGAGACTTCCTCACCCTT
1 AAGTCTGCCTGTCGACTTTGA-CCTAGAGACTTCCTCACCCTT
** **
965303 AAGTCTGCCCATCGACTTTGACCCTAGAGACTTTTTCACCCTT
1 AAGTCTGCCTGTCGACTTTGA-CCTAGAGACTTCCTCACCCTT
965346 AAGTCTGCCT
1 AAGTCTGCCT
965356 ATCAGCTTTA
Statistics
Matches: 156, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 72 0.46
43 50 0.32
44 30 0.19
45 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (42 bp):
AAGTCTGCCTGTCGACTTTGACCTAGAGACTTCCTCACCCTT
Found at i:966639 original size:425 final size:425
Alignment explanation
Indices: 966118--967002 Score: 982
Period size: 425 Copynumber: 2.1 Consensus size: 425
966108 CACCTTTTTC
* * * * *
966118 AGTCTGCCTATCGGCTTTGACCCTAGAGACTT-TTTCCCTTTTAAGTCTACTTATTGGCTTTGAC
1 AGTCTGCCTATCGGCTTTGA-CCTAGAGACTTCTTACCCTCTTAAGTCTACTTATCGACTTTAAC
** * *
966182 CCTAGAAACTACTTCCCCCTTTAAGTTTGCCTGTTGGCTTTGA-CCTGAGAGACTTCCTCACCCT
65 CCTAGAAACTACTTCCCCCTTTAAGTTTGCCTG-TCACTTTGACCCTG-CAGACTTCCTCACCCC
* * * ** *
966246 TAAGTCTGCCTATCGACTTTGACACTGGAGACTTCATTCCCCTTAAGTTTGTTTGTT-AGCTTTG
128 TAAGTCTGCCTATCAACTTTGACACTAGAGACTTCATTCCCCTTAAGTCTACTTGTTGA-CTTCG
** ** * * *
966310 ACTTAGGAGA-TTTTCTTTACCCTTTATCT-TCTCGTCGGGTTAGACCCCAGAGACC-TCTCTAC
192 ACACAAAAGACTTTT-TTCACCCTTTATCTGCCT-GTCGGCTTAGACCCCAGAGACCAT-TCTAC
* * * * * **
966372 CTTTTGCCTGTC-GTCGGCTTAGACTTGGGAGACTTTTCTATCTTTTGTCTGCCTATTGGCTTAG
254 CTTTTGCCTGCCTGTCAGCTTAGACTTGAGAGACTTCTCTATCTTTTGTCTGCCCACCGGCTTAG
* * *
966436 ACCTAG-GAGACTTATCTATCATTTGTCTGCACGTCAGCTTTGACCT-GGGATACTTCTTTACCC
319 A-CTAGAGAGACTTATCTATCATTTATCTGCACGTCAGCTTTGA-CTAGGGAAACTTCTTTAACC
* *
966499 TTCGTCTACCCATCGGCTTAAACCCGGGAGACTGCTTCATCTCA
382 TTCGTCTACCCATCGGCTTAAACCCGAGAGACTACTTCATCTCA
* * * * *
966543 TGTCTGCCTGTCGACTTTGACACTAGAGACTTCTTACCC-CTTAAGTCTGCTTCTCGACTTTAAC
1 AGTCTGCCTATCGGCTTTGAC-CTAGAGACTTCTTACCCTCTTAAGTCTACTTATCGACTTTAAC
* * * * *
966607 CCTAGAGACTTCTT-CCCCTCTTAAGTTTGCCTGTCATTTTGACCCTGCAGATTTTCTCACCCCT
65 CCTAGAAACTACTTCCCCCT-TTAAGTTTGCCTGTCACTTTGACCCTGCAGACTTCCTCACCCCT
* * *
966671 AAGTCTGCCTGTCAACTTTGACCCTAGAGACTTCATTCCTCTTAAGTCTACTTGTTGACTTCGAC
129 AAGTCTGCCTATCAACTTTGACACTAGAGACTTCATTCCCCTTAAGTCTACTTGTTGACTTCGAC
* * ** *
966736 ACAAAAGACTTTTTTCACCCTTTGTCTGCCTGTTGGCTTAGACCTGAGAGACCATTCTATCTTTT
194 ACAAAAGACTTTTTTCACCCTTTATCTGCCTGTCGGCTTAGACCCCAGAGACCATTCTACCTTTT
* * * *
966801 GTCTGCCTGTCAGCTTATACTTGAGAGACTTCTCTATCTTTTGTTTGCCCACCGGCTTAGACTCG
259 GCCTGCCTGTCAGCTTAGACTTGAGAGACTTCTCTATCTTTTGTCTGCCCACCGGCTTAGACTAG
* * * * *
966866 AGAGACTTCTCTATCTTTTATCTGCTCGTTAGCTTTGACTAGGGAAACTTCTTTAACCTTTGTCT
324 AGAGACTTATCTATCATTTATCTGCACGTCAGCTTTGACTAGGGAAACTTCTTTAACCTTCGTCT
* ** *
966931 ATCTGTTGGCTTAAACCCGAGAGACTACTTCATCTCA
389 ACCCATCGGCTTAAACCCGAGAGACTACTTCATCTCA
* *
966968 AGTCTGCTTATCGGCTTTGACCTTAAAGACTTCTT
1 AGTCTGCCTATCGGCTTTGACC-TAGAGACTTCTT
967003 CATAGTTTAG
Statistics
Matches: 378, Mismatches: 70, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
424 133 0.35
425 240 0.63
426 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (425 bp):
AGTCTGCCTATCGGCTTTGACCTAGAGACTTCTTACCCTCTTAAGTCTACTTATCGACTTTAACC
CTAGAAACTACTTCCCCCTTTAAGTTTGCCTGTCACTTTGACCCTGCAGACTTCCTCACCCCTAA
GTCTGCCTATCAACTTTGACACTAGAGACTTCATTCCCCTTAAGTCTACTTGTTGACTTCGACAC
AAAAGACTTTTTTCACCCTTTATCTGCCTGTCGGCTTAGACCCCAGAGACCATTCTACCTTTTGC
CTGCCTGTCAGCTTAGACTTGAGAGACTTCTCTATCTTTTGTCTGCCCACCGGCTTAGACTAGAG
AGACTTATCTATCATTTATCTGCACGTCAGCTTTGACTAGGGAAACTTCTTTAACCTTCGTCTAC
CCATCGGCTTAAACCCGAGAGACTACTTCATCTCA
Found at i:966817 original size:42 final size:42
Alignment explanation
Indices: 966756--966890 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
966746 TTTTTCACCC
**
966756 TTTGTCTGCCTGTTGGCTTAGACCTGAGAGACCAT-TCTATCT
1 TTTGTCTGCCTGTCAGCTTAGACCTGAGAGA-CATCTCTATCT
* * *
966798 TTTGTCTGCCTGTCAGCTTATACTTGAGAGACTTCTCTATCT
1 TTTGTCTGCCTGTCAGCTTAGACCTGAGAGACATCTCTATCT
* *** * *
966840 TTTGTTTGCCCACCGGCTTAGA-CTCGAGAGACTTCTCTATCT
1 TTTGTCTGCCTGTCAGCTTAGACCT-GAGAGACATCTCTATCT
*
966882 TTTATCTGC
1 TTTGTCTGC
966891 TCGTTAGCTT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 3 0.04
42 74 0.96
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (42 bp):
TTTGTCTGCCTGTCAGCTTAGACCTGAGAGACATCTCTATCT
Found at i:967186 original size:135 final size:134
Alignment explanation
Indices: 966936--967188 Score: 296
Period size: 135 Copynumber: 1.9 Consensus size: 134
966926 TGTCTATCTG
*
966936 TTGGCTTAAACCCGAGAGACTACTTCATCTCAAGTCTGCTTATCGGCTTTGACCTTAAAGACTTC
1 TTGGCTTAAACCCGAGAGACTACTTCATCTCAAGACTGCTTATCGGCTTTGACCTTAAAGACTTC
* * * * * *
967001 TTCATAGTTTAGTCTACTTATCGGCTTTGACCCTGGAAAATTTTTTGCTCTTTTGTCATTCATCT
66 TTCACACTTTAGTCTACCTATCGACTTTAACCCT-GAAAATTTTTCGCTCTTTTGTCATTCATCT
967066 ACCCA
130 ACCCA
* * * * *
967071 TTGGCTTAAACCC-ATGAGACTGCTTCATCTCGAGACTGGTTGTCGGCTTTGAGCTTAGAA-ACT
1 TTGGCTTAAACCCGA-GAGACTACTTCATCTCAAGACTGCTTATCGGCTTTGACCTTA-AAGACT
** * *
967134 TCTTTGCCCTTTAGTCTACCTGTCGACTTTAACCCT-AAAGATTTCTTCGCTCTTT
64 TCTTCACACTTTAGTCTACCTATCGACTTTAACCCTGAAA-ATTT-TTCGCTCTTT
967189 AGTCTGCCTG
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
133 3 0.03
134 5 0.05
135 88 0.90
136 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (134 bp):
TTGGCTTAAACCCGAGAGACTACTTCATCTCAAGACTGCTTATCGGCTTTGACCTTAAAGACTTC
TTCACACTTTAGTCTACCTATCGACTTTAACCCTGAAAATTTTTCGCTCTTTTGTCATTCATCTA
CCCA
Found at i:967323 original size:84 final size:85
Alignment explanation
Indices: 967208--967433 Score: 197
Period size: 84 Copynumber: 2.7 Consensus size: 85
967198 GTCGGCTTTG
* * * * *
967208 ACCCTAAAGACTTTTTCGCCCTTAAGTTTGCCTGTTGGGTTTGACCCCAGATACTTCTTCGCCC-
1 ACCCTAAAGACTTTTTCGCCCTTAAGATTGCCTATCGGCTTTGACCCCAGAGACTTCTTCGCCCT
967272 TAAGTTCGAGTGCCGAATTC
66 TAAGTTCGAGTGCCGAATTC
* * * * *
967292 ACCCTAGAGACTTTTTTGCCCGTT-AGATTGCCTATCGGCTTTGACCCTAGAGACTTTTTTGCCC
1 ACCCTAAAGACTTTTTCGCCC-TTAAGATTGCCTATCGGCTTTGACCCCAGAGACTTCTTCGCCC
* ** * * **
967356 TTAAGTTTGCCTATCGGCTTTC
65 TTAAGTTCGAGT-GCCGAATTC
* * * * * *
967378 ACCCTGAAGACTTCTTCGCACTTTAG-TATGCTTATCGGCTTTGACCCCAAAGACTT
1 ACCCTAAAGACTTTTTCGCCCTTAAGAT-TGCCTATCGGCTTTGACCCCAGAGACTT
967434 ATTCCTCTTT
Statistics
Matches: 112, Mismatches: 25, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
84 51 0.46
85 13 0.12
86 48 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (85 bp):
ACCCTAAAGACTTTTTCGCCCTTAAGATTGCCTATCGGCTTTGACCCCAGAGACTTCTTCGCCCT
TAAGTTCGAGTGCCGAATTC
Found at i:967581 original size:130 final size:129
Alignment explanation
Indices: 967320--967554 Score: 308
Period size: 130 Copynumber: 1.8 Consensus size: 129
967310 CCCGTTAGAT
* * *
967320 TGCCTATCGGCTTTGACCCTAGAGACTTTTTTGCCCTTAAGTTTGCCTATCGGCTTTCACCCTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTTTTTCCCCTAAAGTCTGCCTATCGGCTTTCACCCTGA
* * * * * * *
967385 AGACTTCTTCGCACTTTAGTATGCTTATCGGCTTTGACCCCAAAGACTTATTCCTCTTTAAGTC
66 AGACTTCCTCACACTTAAGTATACCTATCAGCTTTGACCCCAAAGACTTATTCCTCCTTAAGTC
* * * *
967449 TGCCTATCGGCTTTGATCCTGGAGACTTTTTTTCCCCTAAAGTCTGCCTATCGGCTTTGACCTTG
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTTTTTCCCCTAAAGTCTGCCTATCGGCTTTCACCCTG
* * *
967514 GAGACTTCCTCACCCTTAAGTCTACCTATCAGCTTTGACCC
65 AAGACTTCCTCACACTTAAGTATACCTATCAGCTTTGACCC
967555 TGGAGATTTC
Statistics
Matches: 89, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
129 24 0.27
130 65 0.73
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (129 bp):
TGCCTATCGGCTTTGACCCTAGAGACTTTTTTCCCCTAAAGTCTGCCTATCGGCTTTCACCCTGA
AGACTTCCTCACACTTAAGTATACCTATCAGCTTTGACCCCAAAGACTTATTCCTCCTTAAGTC
Found at i:968163 original size:130 final size:128
Alignment explanation
Indices: 967971--968274 Score: 283
Period size: 130 Copynumber: 2.4 Consensus size: 128
967961 CTGTCTGTCG
* * ** * * *
967971 GCTTTGACCTTGGAAACTTCATCCCTCTTAAGTCTGCCTGTCAGCTTCGACCCTTGAGACTTCGT
1 GCTTTTACCTTGGAGACTTCATCCCTCTTAAGTCTGCCAATCAGCTTCGAACCTTGAAACTTCAT
* * **
968036 CCCCCTTAAGTCTGCCAGACGGCTTTGACCTTA-TAGACTTCTTCCCCCCTTAAGTCTGCTTGTT
66 CCCCCTTAAGTCTGCCAGACAGCTTTCACC-TAGTAGACTTC--CCCCCCTTAAGTCTGCCAGTT
968100 A
128 A
** * *
968101 GCTTTTACCTTGGAGACTTCATCCCTCTTAAGTCTGCCAATTGGGTT-TAACCTTGGAAACTTCA
1 GCTTTTACCTTGGAGACTTCATCCCTCTTAAGTCTGCCAATCAGCTTCGAACCTT-GAAACTTCA
** * * * * *
968165 TCCCTTTTAAGTTTTCCTGTCAGCTTTCACCTAGTAGACTTCGCCCCCTTAAGTCTGCCAGTTA
65 TCCCCCTTAAGTCTGCCAGACAGCTTTCACCTAGTAGACTTCCCCCCCTTAAGTCTGCCAGTTA
* ** * * *
968229 G-TTTTGACCCTGGAGACTTTTTCCC-CCTAAGTCTACCTATCAGCTT
1 GCTTTT-ACCTTGGAGACTTCATCCCTCTTAAGTCTGCCAATCAGCTT
968275 TCACCTAGAG
Statistics
Matches: 140, Mismatches: 31, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
127 19 0.14
128 36 0.26
129 7 0.05
130 78 0.56
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (128 bp):
GCTTTTACCTTGGAGACTTCATCCCTCTTAAGTCTGCCAATCAGCTTCGAACCTTGAAACTTCAT
CCCCCTTAAGTCTGCCAGACAGCTTTCACCTAGTAGACTTCCCCCCCTTAAGTCTGCCAGTTA
Found at i:969370 original size:84 final size:84
Alignment explanation
Indices: 969204--969370 Score: 178
Period size: 84 Copynumber: 2.0 Consensus size: 84
969194 TCTATCTTTT
* ** ***
969204 GTCTACCCATTGGCTTAGACCCGGGAGACTTCTCTATCTTTTGTTTGCCCATCAACTTTGACTTG
1 GTCTACCCATTGGCTTAAACCCGGGAGACCGCTCTATCTCAAGTTTGCCCATCAACTTTGACTTG
* **
969269 GGATACTCTTTTTCCCTTC
66 GGAGACTCTTTCGCCCTTC
* * *
969288 GTCTACCCATTGGCTTAAACCTGGGAGACCGCT-TCATCTCAAGTTTGCCTATCGACTTTGATCT
1 GTCTACCCATTGGCTTAAACCCGGGAGACCGCTCT-ATCTCAAGTTTGCCCATCAACTTTGA-CT
969352 T-GGAGACT-TCTTCGCCCTT
64 TGGGAGACTCT-TTCGCCCTT
969371 AAGTCTTCCT
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
83 2 0.03
84 63 0.93
85 3 0.04
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.37
Consensus pattern (84 bp):
GTCTACCCATTGGCTTAAACCCGGGAGACCGCTCTATCTCAAGTTTGCCCATCAACTTTGACTTG
GGAGACTCTTTCGCCCTTC
Found at i:969608 original size:303 final size:303
Alignment explanation
Indices: 969215--969764 Score: 701
Period size: 303 Copynumber: 1.8 Consensus size: 303
969205 TCTACCCATT
** * * * * * *
969215 GGCTTAGACCCGGGAGACTTCTCTATCTTTTGTTTGCCCATCAACTTTGACTTGGGATACTCTTT
1 GGCTTAGACCCGAAAGACTTCTCTATCTTTTCTCTACCCATCAACTTTGACCTGAGAGACTCTTT
* * ** * *
969280 TTCCCTTCGTCTACCCATTGGCTTAAACCTGGGAGACCGCTTCATCTCAAGTTTGCCTATCGACT
66 TTCCATTCGTCTACCCATCGGCTTAAACCCAGGAGACCGCTTCATCTCAAGTCTGCCAATCGACT
* * * * * *
969345 TTGATCTTGGAGACTTCTTCGCCCTTAAGTCTTCCTGTTAG-CTTTGACTCTAGAGACTTCATC-
131 TTGACCTTAGAGACTTCTTCGCCCTTAAGTCTACCTG-TAGACTTTAACCCTAAAGACTTCATCG
* *
969408 CCTCTTAAGTCTGCCTATCGGCTTTGACCCTAGAGACTTCTTCGCTCTTAAGTTAGCCTATCGGC
195 CC-CTTAAGTCTGCCTATCGGCTTTGACCCTAGAAACTTCTTCGCCCTTAAGTTAGCCTATCGGC
969473 TTTGACCTTGGAGACAAGACTTTGTCCCCGTTAAGTCTGCTCATC
259 TTTGACCTTGGAGACAAGACTTTGTCCCCGTTAAGTCTGCTCATC
*
969518 GGCTTAGACCCGAAAGACTTCTCTATCTTTTCTCTACCCGTCAACTTTGACCTGAGAGACT-TTT
1 GGCTTAGACCCGAAAGACTTCTCTATCTTTTCTCTACCCATCAACTTTGACCTGAGAGACTCTTT
** * * *
969582 TTGTTATTCGTCTACCCATCGGCTTAAACCCATGAGACTGCTTCCTCTCAAGTCTGCCAATCGAC
66 TT-CCATTCGTCTACCCATCGGCTTAAACCCAGGAGACCGCTTCATCTCAAGTCTGCCAATCGAC
* * * * *
969647 TTTGACCTTAGAGACTTCTTTGCCCTTTAGTCTACCTGTCGACTTTAACCCTAAAGATTTCTTCG
130 TTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTACCTGTAGACTTTAACCCTAAAGACTTCATCG
* * * * * *
969712 CCCTTTAGTCTGTCTGTCGGCTTTGACCCTGGAAACTTTTTTGCCCTTAAGTT
195 CCCTTAAGTCTGCCTATCGGCTTTGACCCTAGAAACTTCTTCGCCCTTAAGTT
969765 TGCTTGTTGG
Statistics
Matches: 205, Mismatches: 39, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
302 7 0.03
303 196 0.96
304 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (303 bp):
GGCTTAGACCCGAAAGACTTCTCTATCTTTTCTCTACCCATCAACTTTGACCTGAGAGACTCTTT
TTCCATTCGTCTACCCATCGGCTTAAACCCAGGAGACCGCTTCATCTCAAGTCTGCCAATCGACT
TTGACCTTAGAGACTTCTTCGCCCTTAAGTCTACCTGTAGACTTTAACCCTAAAGACTTCATCGC
CCTTAAGTCTGCCTATCGGCTTTGACCCTAGAAACTTCTTCGCCCTTAAGTTAGCCTATCGGCTT
TGACCTTGGAGACAAGACTTTGTCCCCGTTAAGTCTGCTCATC
Found at i:969738 original size:86 final size:85
Alignment explanation
Indices: 969646--969894 Score: 250
Period size: 85 Copynumber: 2.9 Consensus size: 85
969636 TGCCAATCGA
* * * * *
969646 CTTTGACCTTAGAGACTTCTTTGCCCTTTAGTCTACCTGTCGACTTTAACCCTAAAGATTTCTTC
1 CTTTGACCCTGGAGACTTTTTTGCCCTTTAGT-TACCTGTCGACTTTAACCCTAGAGACTTCTTC
* * *
969711 GCCCTTTAGTCTGTC-TGTCGG
65 GCCCTTAAGTCTGACATG-CCG
* * * * * * * *
969732 CTTTGACCCTGGAAACTTTTTTGCCCTTAAGTTTGCTTGTTGGCTTTAATCCTAGATACTTCTTC
1 CTTTGACCCTGGAGACTTTTTTGCCCTTTAG-TTACCTGTCGACTTTAACCCTAGAGACTTCTTC
*
969797 GCCCTTAAGT-TCACATGCCG
65 GCCCTTAAGTCTGACATGCCG
** * * *
969817 AATTCACCCTGGAGACTTTTTTGCCCTTTAGATTACCTGTCGACTTTGACCCTAGAGACTTGTTC
1 CTTTGACCCTGGAGACTTTTTTGCCCTTTAG-TTACCTGTCGACTTTAACCCTAGAGACTTCTTC
969882 GCCCTTAAGTCTG
65 GCCCTTAAGTCTG
969895 CCTATCGGTA
Statistics
Matches: 128, Mismatches: 32, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
85 65 0.51
86 62 0.48
87 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.39
Consensus pattern (85 bp):
CTTTGACCCTGGAGACTTTTTTGCCCTTTAGTTACCTGTCGACTTTAACCCTAGAGACTTCTTCG
CCCTTAAGTCTGACATGCCG
Found at i:969966 original size:171 final size:171
Alignment explanation
Indices: 969657--969966 Score: 374
Period size: 171 Copynumber: 1.8 Consensus size: 171
969647 TTTGACCTTA
* *
969657 GAGACTTCTTTGCCCTTTAGTCTACCTGTCGACTTTAACCCTAAAGATTTCTTCGCCCTTTAGTC
1 GAGACTTCTTTGCCCTTTAGTCTACCTGTCGACTTTAACCCTAAAGACTTCTTCGCCCTTAAGTC
* * * * * * * * * * * *
969722 TGTCTGTCGGCTTTGACCCTGGAAACTTTTTTGCCCTTAAGTTTGCTTGTTGGCTTTAATCCTAG
66 TGCCTATCGGCTTTCACCCTGGAAAATTCTTCGCCCTTAAGTATGCTTATCGGCGTTAACCCTAA
*
969787 ATACTTCTTCGCCCTTAAGTTCACATGCCGAATTCACCCTG
131 AGACTTCTTCGCCCTTAAGTTCACATGCCGAATTCACCCTG
* * * *
969828 GAGACTTTTTTGCCCTTTAGAT-TACCTGTCGACTTTGACCCTAGAGACTTGTTCGCCCTTAAGT
1 GAGACTTCTTTGCCCTTTAG-TCTACCTGTCGACTTTAACCCTAAAGACTTCTTCGCCCTTAAGT
* * *
969892 CTGCCTATCGG-TATTCACCCT-GAAGAATTCTTCGTCCTTTAGTATGCTTATCGGCGTTGACCC
65 CTGCCTATCGGCT-TTCACCCTGGAA-AATTCTTCGCCCTTAAGTATGCTTATCGGCGTTAACCC
969955 TAAAGACTTCTT
128 TAAAGACTTCTT
969967 TTTCTTTTAG
Statistics
Matches: 114, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
170 4 0.04
171 109 0.96
172 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.38
Consensus pattern (171 bp):
GAGACTTCTTTGCCCTTTAGTCTACCTGTCGACTTTAACCCTAAAGACTTCTTCGCCCTTAAGTC
TGCCTATCGGCTTTCACCCTGGAAAATTCTTCGCCCTTAAGTATGCTTATCGGCGTTAACCCTAA
AGACTTCTTCGCCCTTAAGTTCACATGCCGAATTCACCCTG
Found at i:970267 original size:41 final size:41
Alignment explanation
Indices: 970146--970280 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
970136 TTTTTTACCC
* * * * *
970146 TTTGTCTTCTCGTCGGCCTAGACCCAAGAGACCTTTCTACCT
1 TTTGTCTGCCCGTCGGCTTAGACCCAAGA-AACTTTCTATCT
* * * * *
970188 TTTG-CATG-TCG-CTGGCTTAAACCCAGGAGACATCTCTATCT
1 TTTGTC-TGCCCGTC-GGCTTAGACCCAAGAAAC-TTTCTATCT
970229 TTTGTCTGCCCGTCGGCTTAGACCCAAGAAACTTTCTATCT
1 TTTGTCTGCCCGTCGGCTTAGACCCAAGAAACTTTCTATCT
970270 TTTGTCTGCCC
1 TTTGTCTGCCC
970281 ATCAGCTCTG
Statistics
Matches: 74, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
40 2 0.03
41 48 0.65
42 23 0.31
43 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.34
Consensus pattern (41 bp):
TTTGTCTGCCCGTCGGCTTAGACCCAAGAAACTTTCTATCT
Found at i:971889 original size:42 final size:41
Alignment explanation
Indices: 971768--971897 Score: 129
Period size: 42 Copynumber: 3.1 Consensus size: 41
971758 ATCTTTACCC
* * * * *
971768 TTTGTCTTCCCGTCGGCTTAGACCCGAGAGACCTCTCTAACT
1 TTTGTC-TACCGTCGGCTTAGACCAGGGAGACTTCTCTATCT
* * * *
971810 TTTGTCTATCGTCGACTTCGACTTTA-GG-GACTTCTCTATCT
1 TTTGTCTACCGTCGGCTTAGAC--CAGGGAGACTTCTCTATCT
971851 TTTGTCTACCTGTCGGCTTAGACCAGGGAGACTTCTCTATCT
1 TTTGTCTACC-GTCGGCTTAGACCAGGGAGACTTCTCTATCT
971893 TTTGT
1 TTTGT
971898 TTGCCAATCA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
40 1 0.01
41 34 0.49
42 35 0.50
ACGTcount: A:0.15, C:0.27, G:0.19, T:0.38
Consensus pattern (41 bp):
TTTGTCTACCGTCGGCTTAGACCAGGGAGACTTCTCTATCT
Found at i:972398 original size:298 final size:298
Alignment explanation
Indices: 971862--972408 Score: 661
Period size: 298 Copynumber: 1.8 Consensus size: 298
971852 TTGTCTACCT
* * * * *
971862 GTCGGCTTAGACCAGGGAGACTTCTCTATCTTTTGTTTGCCAATCAACTTTGACTTGGGATACTC
1 GTCGGCTTAGACCAGGGAGACTTCTCTATCTTTTCTCTACCAATCAACTTTGACTTGAGAGACTC
* * * *
971927 CTTTGCCCTTCGTATACCTGTCGACTTAAACCCGAGAGATCGCTTCATCTCAAGTTTGCCTTTTG
66 CTTTGCCCTTCGTATACCCGTCGACTTAAACCCGAGAGATCGCTTCATCTCAAGTCTGCCTATCG
* * * * * * * * *
971992 ACTTTGACCTTGGAGACTTCTTTGCCCTTAAGTTTGCTTGTCGGCTTTGACTCTAGAGACTTTGT
131 ACTTTAACCTTAGAAACTTCTTCGCCCTTAAGTCTACTTGTCGACTTTAACCCTAGAGACTTTGT
* * * * *
972057 CCCCCTTAAGTCTGCCTATCGACTTTGACCATGGAGACTTCTTCGCTCTTAAGTCAGCCTATTGG
196 CCCCCTTAAGTCTACATACCGACTTTGACCATGGAAACTTCTTCGCCCTTAAGTCAGCCTATTGG
972122 CTTTGACCCTGGAGACTTCATCCCCCTTAAGTCTGCCA
261 CTTTGACCCTGGAGACTTCATCCCCCTTAAGTCTGCCA
**
972160 GTCGGCTTAGACCCA-GGAGACTTCTCTATCTTTTCTCTACCCGTCAACTTTGACTTGAGAGACT
1 GTCGGCTTAGA-CCAGGGAGACTTCTCTATCTTTTCTCTACCAATCAACTTTGACTTGAGAGACT
* * * * *
972224 TCTTTGTCCTTCGTCTACCCGTCGGCTTAAACTC-ATGAGA-CTGCTTCATCTCAAGTCTGCCTA
65 CCTTTGCCCTTCGTATACCCGTCGACTTAAACCCGA-GAGATC-GCTTCATCTCAAGTCTGCCTA
* *
972287 TCGGCTTTAACCTTAGAAACTTCTTCGCCCTTTAGTCTACTTGTCGACTTTAACCCTAGAGA-TT
128 TCGACTTTAACCTTAGAAACTTCTTCGCCCTTAAGTCTACTTGTCGACTTTAACCCTAGAGACTT
* ** * ** * * *
972351 TCTTTGCCTTTTGGTCTACATGCCGGCTTTGACCTTGGAAACTTCTTCGCCCTTAAGT
193 T-GTCCCCCTTAAGTCTACATACCGACTTTGACCATGGAAACTTCTTCGCCCTTAAGT
972409 TTACCTGTCG
Statistics
Matches: 204, Mismatches: 41, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
297 5 0.02
298 196 0.96
299 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (298 bp):
GTCGGCTTAGACCAGGGAGACTTCTCTATCTTTTCTCTACCAATCAACTTTGACTTGAGAGACTC
CTTTGCCCTTCGTATACCCGTCGACTTAAACCCGAGAGATCGCTTCATCTCAAGTCTGCCTATCG
ACTTTAACCTTAGAAACTTCTTCGCCCTTAAGTCTACTTGTCGACTTTAACCCTAGAGACTTTGT
CCCCCTTAAGTCTACATACCGACTTTGACCATGGAAACTTCTTCGCCCTTAAGTCAGCCTATTGG
CTTTGACCCTGGAGACTTCATCCCCCTTAAGTCTGCCA
Found at i:972861 original size:42 final size:42
Alignment explanation
Indices: 972759--972899 Score: 126
Period size: 42 Copynumber: 3.4 Consensus size: 42
972749 TATCTTCTCG
* * * * * * *
972759 TTGGCTTAGACCCGAAAGACCTCTCTACCTTTTGTTTG-TCG
1 TTGGCTTAGACCCGAGAGACTTCTTTATCTTTTGTCTGCCCA
* * * *
972800 TCGGTTTAGACTCGGGAGACTTCTTTATCTTTTGTCTGCCCA
1 TTGGCTTAGACCCGAGAGACTTCTTTATCTTTTGTCTGCCCA
*
972842 TTGGCTTAGACCCGAGAGACTT-TTCTATCTTTTGTCTGCCTA
1 TTGGCTTAGACCCGAGAGACTTCTT-TATCTTTTGTCTGCCCA
*
972884 TTAGCTCT-GACCCGAG
1 TTGGCT-TAGACCCGAG
972900 GTGCTCTTTT
Statistics
Matches: 80, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
41 31 0.39
42 48 0.60
43 1 0.01
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.38
Consensus pattern (42 bp):
TTGGCTTAGACCCGAGAGACTTCTTTATCTTTTGTCTGCCCA
Found at i:974000 original size:388 final size:382
Alignment explanation
Indices: 972964--974117 Score: 993
Period size: 388 Copynumber: 3.0 Consensus size: 382
972954 CTCTTGTCTA
* * *
972964 CCTGTCGGCTTTGACACTAAAGACTTCTTCCCCCCTTAAGTCTGCTTGTAGGCTTTGACCTTGGA
1 CCTGTCGGCTTTGACACTAGAGACTTC-TCCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGA
* ** ** * *
973029 AACTTCTTCCCTTCTTAAGTCTGCCTGTC-AGCTTTGACTTTGGAGACTTCCTCACCCTTAAATC
65 AACTTTTTCCC-TCTTAAGTCTGCCTGTCGA-CTTTGACCCTGGAGACTTTTTTACCCTTAAGTC
* * * * * * *
973093 TGCCT-GTCGACTTTGACCTTGGAAACTTTGTCCATCTTAAGTTTGCCTGTCAGCTTTGCCCCCT
128 TG-CTAGTCGGCTTTGACCTTGGAAACTTCGTCCCT-TTAAGTCTGCCTGTC-GATTT-CACCAT
* * * *
973157 AGAGACTTCATCCCCCTTAAGTCTGCTAGTTGGCTTTGACCTTGGAAACTTTTTCCCCCCTTAAG
189 AGAGACTTCATCCCCCTTAAGTCTCCT-GTCGGCTTTGACCTTGGAGACTTCTT--CCCCTTAAG
* * * * *
973222 TCTGCGTGTC-AGCTTTTACCCT-AGAGACTTCGTCCCCCTTAAGTCTACCAATCGAG-TTTGAC
251 TCTGCCTGTCGA-CTTTGACCCTGAGAAACTTTGT-CCCCTTAAGTCTACCTATC-AGCTTTGAC
* * * ** * *
973284 CATTGAAACTTCATCCCCCTTAAGTTTGCCTGTCAACTTTCACCTTGGAGACTTCGTCCCCCTTA
313 C-TAGAGACTTCATCCCCCTTAAGTTTGCCAGTCGGCTTTGACCTTGGAGACTTCTTCCCCCTTA
***
973349 AGTTTT
377 AGTCAG
* * * * * *
973355 CCAGTCGGCTTTGACCCTAGAGACTTCTTCCCCC-TAAGTTTGCTTGTCAGCTTTGA-CCTGGAG
1 CCTGTCGGCTTTGACACTAGAGACTTCTCCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAA
* * * * * * * *
973418 ACATTTTCCCCCCTTAAGTTTGCCTCTTGGCTTTGACCCTGGATACTTTTTTACCCTTAAGTATG
66 AC-TTTTTCCCTCTTAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTTTTTACCCTTAAGTCTG
* * * * * * * * * * *
973483 CCAGCCAGCTTTGACCCTGGAAACTTCGTCCCCCTGAAGTCTGCTTGTCAACTTTGACCTTGGAG
130 CTAGTCGGCTTTGACCTTGGAAACTTCGT-CCCTTTAAGTCTGCCTGTCGA-TTTCACCATAGAG
* * * ** *
973548 ACTTCTTCCTCCCTCAAGTCTGGCC-ATCAACTTTGATCC-TGGAGACTTCCTCACCCTTAAGTC
193 ACTTCATCC-CCCTTAAGTCT--CCTGTCGGCTTTGA-CCTTGGAGACTTCTTC-CCCTTAAGTC
* * * * * *
973611 TGCTTATCGACTTTGA-CCTGAGAAACTTTGTCCCTCTTAAGTCTGCCTGTTAGCTTTGACTCTG
253 TGCCTGTCGACTTTGACCCTGAGAAACTTTGTCCC-CTTAAGTCTACCTATCAGCTTTGAC-CTA
*
973675 GAGACTTCGTCCCCCTTAAGTTTGCCAGTCGGCTTTGACCTTGGAGACTTCTTCCCCCTTAAGTC
316 GAGACTTCATCCCCCTTAAGTTTGCCAGTCGGCTTTGACCTTGGAGACTTCTTCCCCCTTAAGTC
973740 AG
381 AG
* * * * * ** *
973742 CTTGTCAGCTTTTACACTAGAGACTTCGCCCCCCTTATGTCTGCTACTCGGCTTTGACCCTGAAA
1 CCTGTCGGCTTTGACACTAGAGACTTCTCCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAA
* * * * *
973807 ACTTTTTCCCTCTTAAATCTACCTGTCGACTTTGACCCTAGAGACTTTTTTGCCTTTAAGTCTGC
66 ACTTTTTCCCTCTTAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTTTTTACCCTTAAGTCTGC
* *
973872 TAGTCGGCTTTGACCTTGGAAACTTCGTCTCCTTTAAGTCTGCCTATCGGATTTTACCATAGAGA
131 TAGTCGGCTTTGACCTTGGAAACTTCGTC-CCTTTAAGTCTGCCTGTC-GATTTCACCATAGAGA
* *
973937 CTTC-GCCCCCTTTAAGTCTACCTGTCGGCTTTGACCTTCGAGACTTCTTCCCCTATTAAGTCTG
194 CTTCATCCCCC-TTAAGTCT-CCTGTCGGCTTTGACCTTGGAGACTTCTTCCCC--TTAAGTCTG
* * * * *
974001 CCTGTCGGCTTTGACCCTG-GAAGCTTTCTCACCCTTAAGTCTCCCTATCAGCTTTGACCCTAAA
255 CCTGTCGACTTTGACCCTGAGAAACTTTGTC-CCCTTAAGTCTACCTATCAGCTTTGA-CCTAGA
* ** ** * *
974065 GACTTCTTTGCCCAAAAGTTTACCTA-TCGGCTTTGACCTTGGAGACTCCTTCC
318 GACTTCATCCCCCTTAAGTTTGCC-AGTCGGCTTTGACCTTGGAGACTTCTTCC
974118 TACTTATGTC
Statistics
Matches: 600, Mismatches: 135, Indels: 59
0.76 0.17 0.07
Matches are distributed among these distances:
386 19 0.03
387 177 0.29
388 328 0.55
389 45 0.08
390 7 0.01
391 24 0.04
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (382 bp):
CCTGTCGGCTTTGACACTAGAGACTTCTCCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAA
ACTTTTTCCCTCTTAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTTTTTACCCTTAAGTCTGC
TAGTCGGCTTTGACCTTGGAAACTTCGTCCCTTTAAGTCTGCCTGTCGATTTCACCATAGAGACT
TCATCCCCCTTAAGTCTCCTGTCGGCTTTGACCTTGGAGACTTCTTCCCCTTAAGTCTGCCTGTC
GACTTTGACCCTGAGAAACTTTGTCCCCTTAAGTCTACCTATCAGCTTTGACCTAGAGACTTCAT
CCCCCTTAAGTTTGCCAGTCGGCTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCAG
Found at i:974000 original size:431 final size:428
Alignment explanation
Indices: 972960--974059 Score: 1066
Period size: 431 Copynumber: 2.5 Consensus size: 428
972950 TCATCTCTTG
* * *
972960 TCTACCTGTCGGCTTTGACACTAAAGACTTCTTCCCCCCTTAAGTCTGCTTGTAGGCTTTGACCT
1 TCTACCTGTCGACTTTGACCCTAGAGACTT-TTCCCCCCTTAAGTCTGC-TGTAGGCTTTGACCT
* **
973025 TGGAAACTTCTTC-CCTTCTTAAGTCTGCCTGTCAGCTTTGACTTTGGAGACTTC-CTCACCCTT
64 TGGAAACTTCTTCTCC-T-TTAAGTCTGCCTATCAGCTTTGACCATGGAGACTTCGC-C-CCCTT
* * * *
973088 AAATCTGCCTGTCGACTTTGACCTTGGAAACTT-TGT-CCATCTTAAGTTTGCCTGTCAGCTTTG
125 AAGTCTGCCTGTCGACTTTGACCTTGGAGACTTCT-TCCCCTCTTAAGTCTGCCTGTCAGCTTTG
* * * * * * *
973151 CCCCCTAGAGACTTCATCCCCCTTAAGTCTGCTAGTTGGCTTTGACCTTGGAAACTTTTTCCCCC
189 -ACCCTGGAGACTTCCTCACCCTTAAGTCTGCTA-TCGACTTTGACCTTGGAAACTTTGTCCCCC
* *
973216 CTTAAGTCTGCGTGTCAGCTTTTACCCTAGAGACTTCGTCCCCCTTAAGTCTACCAATCGAGTTT
252 CTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTACCAATCGAGTTT
** * *
973281 GACCATTGAAACTTCATCCCCCTTAAGTTTGCCTGTCAACTTTCACCTTGGAGACTTCGTCCCCC
317 GACCATTGAAACTTCATCCCCCTTAAGTCAGCCTGTCAACTTTCACCTTAGAGACTTCGCCCCCC
* * * * *
973346 TTAAGTTTTCCAGTCGGCTTTGACCCTAGAGACTTCTTCCCCCTAAG
382 TTAAGTCTGCCACTCGGCTTTGACCCTAGAAACTTCTTCCCCCTAAA
* * * * * * *
973393 TTTGCTTGTC-AGCTTTGA-CCTGGAGACATTTTCCCCCCTTAAGTTTGCCTCTTGGCTTTGACC
1 TCTACCTGTCGA-CTTTGACCCTAGAGAC-TTTTCCCCCCTTAAGTCTG-CTGTAGGCTTTGACC
* * * * * * * * *
973456 CTGGATACTT-TTTTACCCTTAAGTATGCC-AGCCAGCTTTGACCCTGGAAACTTCGTCCCCCTG
63 TTGGAAACTTCTTCT-CCTTTAAGTCTGCCTA-TCAGCTTTGACCATGGAGACTTCG-CCCCCTT
* * * * *
973519 AAGTCTGCTTGTCAACTTTGACCTTGGAGACTTCTTCCTCC-CTCAAGTCTGGCC-ATCAACTTT
125 AAGTCTGCCTGTCGACTTTGACCTTGGAGACTTCTTCC-CCTCTTAAGTCT-GCCTGTCAGCTTT
*
973582 GATCCTGGAGACTTCCTCACCCTTAAGTCTGCTTATCGACTTTGACC-TGAGAAACTTTGT-CCC
188 GACCCTGGAGACTTCCTCACCCTTAAGTCTGC-TATCGACTTTGACCTTG-GAAACTTTGTCCCC
* * * * * * *
973645 TCTTAAGTCTGCCTGTTAGCTTTGACTCTGGAGACTTCGTCCCCCTTAAGTTTGCCAGTCG-GCT
251 CCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTACCAATCGAG-T
* * * * *
973709 TTGACC-TTGGAGACTTCTTCCCCCTTAAGTCAGCTTGTCAGCTTTTACAC-TAGAGACTTCGCC
315 TTGACCATT-GAAACTTCATCCCCCTTAAGTCAGCCTGTCAACTTTCAC-CTTAGAGACTTCGCC
* * * *
973772 CCCCTTATGTCTGCTACTCGGCTTTGACCCT-GAAAACTTTTTCCCTCTTAAA
378 CCCCTTAAGTCTGCCACTCGGCTTTGACCCTAG-AAACTTCTTCCC-CCTAAA
*** * *
973824 TCTACCTGTCGACTTTGACCCTAGAGACTTTTTTGCCTTTAAGTCTGCTAGTCGGCTTTGACCTT
1 TCTACCTGTCGACTTTGACCCTAGAGACTTTTCCCCCCTTAAGTCTGCT-GTAGGCTTTGACCTT
* * * * *
973889 GGAAACTTCGTCTCCTTTAAGTCTGCCTATCGGATTTTACCATAGAGACTTCGCCCCCTTTAAGT
65 GGAAACTTCTTCTCCTTTAAGTCTGCCTATCAGCTTTGACCATGGAGACTTCGCCCCC-TTAAGT
* * * * *
973954 CTACCTGTCGGCTTTGACCTTCGAGACTTCTTCCCCTATTAAGTCTGCCTGTCGGCTTTGACCCT
129 CTGCCTGTCGACTTTGACCTTGGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCAGCTTTGACCCT
* *
974019 GGA-AGCTTTCTCACCCTTAAGTCTCCCTATC-AGCTTTGACC
194 GGAGA-CTTCCTCACCCTTAAGTCT-GCTATCGA-CTTTGACC
974060 CTAAAGACTT
Statistics
Matches: 534, Mismatches: 103, Indels: 62
0.76 0.15 0.09
Matches are distributed among these distances:
429 4 0.01
430 157 0.29
431 275 0.51
432 75 0.14
433 23 0.04
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (428 bp):
TCTACCTGTCGACTTTGACCCTAGAGACTTTTCCCCCCTTAAGTCTGCTGTAGGCTTTGACCTTG
GAAACTTCTTCTCCTTTAAGTCTGCCTATCAGCTTTGACCATGGAGACTTCGCCCCCTTAAGTCT
GCCTGTCGACTTTGACCTTGGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCAGCTTTGACCCTGG
AGACTTCCTCACCCTTAAGTCTGCTATCGACTTTGACCTTGGAAACTTTGTCCCCCCTTAAGTCT
GCCTGTCAGCTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTACCAATCGAGTTTGACCATTGA
AACTTCATCCCCCTTAAGTCAGCCTGTCAACTTTCACCTTAGAGACTTCGCCCCCCTTAAGTCTG
CCACTCGGCTTTGACCCTAGAAACTTCTTCCCCCTAAA
Found at i:974198 original size:216 final size:216
Alignment explanation
Indices: 973789--974198 Score: 447
Period size: 216 Copynumber: 1.9 Consensus size: 216
973779 TGTCTGCTAC
* * *
973789 TCGGCTTTGACCCTGAAAACTTTTTCCCTCTTAAATCTACCTGTCGACTTTGACCCTAGAGACTT
1 TCGGCTTTGACCCTGAAAACTTTCTCCCTCTTAAATCTACCTATCGACTTTGACCCTAAAGACTT
* *** * * *
973854 TTTTGCCTTTAAGTCTGCTAGTCGGCTTTGACCTTGGAAACTTCGTCTCCTTTAAGTCTGCCTAT
66 CTTTGCCCAAAAGTCTCCTAGTCGGCTTTGACCTTGGAAACTTCCTCTCCTTTAAGTCTACCTAT
* * * * ***
973919 CGGATTTTACCATAGAGACTTCGCCCCCTTTAAGTCTACCTGTCGGCTTTGACCTTCGAGACTTC
131 CCGATTTAACCATAGAGACTTCGCCCCCTTTAAGTCTACCTATCGGCTTAGACCCAAGAGACTTC
973984 TTCCCCTATTAAGTCTGCCTG
196 TTCCCCTATTAAGTCTGCCTG
* * * *
974005 TCGGCTTTGACCCTGGAAGCTTTCTCACC-CTTAAGTCTCCCTATC-AGCTTTGACCCTAAAGAC
1 TCGGCTTTGACCCTGAAAACTTTCTC-CCTCTTAAATCTACCTATCGA-CTTTGACCCTAAAGAC
* * *
974068 TTCTTTGCCCAAAAGTTTACCTA-TCGGCTTTGACCTTGGAGAC-TCCT-TCCTACTTATGTCTA
64 TTCTTTGCCCAAAAGTCT-CCTAGTCGGCTTTGACCTTGGAAACTTCCTCTCCT--TTAAGTCTA
* ** * *
974130 CCTA-CCGACTTTAACCTTAGAGACTTCATTCCCC-TTAAGTCTGCCTATTGGCTTAGACCCAAG
126 CCTATCCGA-TTTAACCATAGAGACTTC-GCCCCCTTTAAGTCTACCTATCGGCTTAGACCCAAG
974193 AGACTT
189 AGACTT
974199 TCTTTACCCT
Statistics
Matches: 158, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
214 4 0.03
215 7 0.04
216 138 0.87
217 9 0.06
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.35
Consensus pattern (216 bp):
TCGGCTTTGACCCTGAAAACTTTCTCCCTCTTAAATCTACCTATCGACTTTGACCCTAAAGACTT
CTTTGCCCAAAAGTCTCCTAGTCGGCTTTGACCTTGGAAACTTCCTCTCCTTTAAGTCTACCTAT
CCGATTTAACCATAGAGACTTCGCCCCCTTTAAGTCTACCTATCGGCTTAGACCCAAGAGACTTC
TTCCCCTATTAAGTCTGCCTG
Found at i:974268 original size:42 final size:42
Alignment explanation
Indices: 974179--974343 Score: 124
Period size: 42 Copynumber: 3.9 Consensus size: 42
974169 TCTGCCTATT
** * * * * * *
974179 GGCTTAGACCCAAGAGACTTTCTTTACCCTTTCTCTTCTTGTG
1 GGCTTAGACCCGGGAGAC-TTCTCTATCTTTTGTCTGCTTGTA
*
974222 GGCTTAGACCCGGGAGATTTCTCTATCTTTTGTCTGCTTGTA
1 GGCTTAGACCCGGGAGACTTCTCTATCTTTTGTCTGCTTGTA
* *
974264 GGCTTAGACTCGATGG-G-CTTCTCTATCTTTTGTTTGCCTAT-TA
1 GGCTTAGACCCG--GGAGACTTCTCTATCTTTTGTCTG-CT-TGTA
**
974307 -GCTTAGACTTGGGAGACTTCT-TAATCTTTTGTCTGCT
1 GGCTTAGACCCGGGAGACTTCTCT-ATCTTTTGTCTGCT
974344 CGCCAACTTT
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 4 0.04
42 72 0.71
43 20 0.20
44 3 0.03
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.42
Consensus pattern (42 bp):
GGCTTAGACCCGGGAGACTTCTCTATCTTTTGTCTGCTTGTA
Found at i:974494 original size:43 final size:42
Alignment explanation
Indices: 974419--974724 Score: 209
Period size: 43 Copynumber: 7.1 Consensus size: 42
974409 GCTACATCTC
* * * ** *
974419 AAGTCTGCCTGTCGGCTTTGACTTTAGAGACTTCTTCGCCCTA
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTTC-CCCTT
* * * *
974462 AAGTCTACCTATCGACTCTGACCCTGGTGACTTCATCCACCTT
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTTCC-CCTT
* * *
974505 AAGTCTGCCTATAGACTTTGACCTTAGAGACTTCTTCCCCTCTT
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTT-CCC-CTT
* * * * * *
974549 AAGTCTGCCTGTCGACTTTGAGCCTAAAGATTTCCTCACCCTT
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTTC-CCCTT
* * * * * *
974592 AAGTATGCCTGTCGGCTTTGACCTTGGAGACTTCTTCGCCCTT
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTTC-CCCTT
* * * * *
974635 AAGTCTGCTTGTCGACTTTGTCCCTAGAGATTTC-TCCTGCCTT
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTTCC--CCTT
* ** * *
974678 AAGTTTGCCTATCGGTTTTGACCCTAAAGACTTCGTTCCCCTT
1 AAGTCTGCCTATCGACTCTGACCCTAGAGACTTC-TTCCCCTT
974721 AAGT
1 AAGT
974725 TCGCTTGTCG
Statistics
Matches: 207, Mismatches: 48, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
41 1 0.00
42 3 0.01
43 164 0.79
44 36 0.17
45 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (42 bp):
AAGTCTGCCTATCGACTCTGACCCTAGAGACTTCTTCCCCTT
Found at i:974678 original size:86 final size:84
Alignment explanation
Indices: 970393--974739 Score: 449
Period size: 86 Copynumber: 50.8 Consensus size: 84
970383 GACTTCTTCC
* * * * * * * *
970393 CCCCTTAAGTTTGCCTGTAGGCTTTAACCTTGGAGACTTCTTCCCCCCTTAAGTTTGCCTGT-TA
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTT-CGCCCTTAAGTCTGCCTGTCGA
* * * *
970457 GCTTTGACCTTGGACACTTCTTT
65 -CTTTGACCCTAGAGA-TT-TCT
* * * * * * ** *
970480 GCCCTTAAATCTGCCTGTCAGCTTTGACCTTGGAAACTTAATC-CTTCTTAAGTCTGCCTGTC-A
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGC-CCTTAAGTCTGCCTGTCGA
*
970543 GCTTTGACCCT-GAAGACTTCGT
65 -CTTTGACCCTAG-AGATTTC-T
* * *
970565 CCCCTTTAAGTTTG-CTAGTCGGCTTTGACCTTAGAGACTTCTTCCCCCCTTAAGTCTGCTTGTC
1 CCCC-TTAAGTCTGCCTA-TCGGCTTTGACCTTAGAGACTTCTT-CGCCCTTAAGTCTGCCTGTC
* * *
970629 -AGCTTTTACACTAGAGACTTCAT
63 GA-CTTTGACCCTAGAGATTTC-T
* * * * * * *
970652 CCCCCTTAAGTCTGCCAATCGGGTTTGACCTTGGAAAATTCATC-CCCTTTAAGTCTGCCTATC-
1 -CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCC-TTAAGTCTGCCTGTCG
* * *
970715 AGCTTTCA-CCTTGAAGACTTCGT
64 A-CTTTGACCCTAG-AGATTTC-T
* * * * * *
970738 CCCCCTTAAGTCTGCC-AGTCAGTTTTGACCTTGGAGACTTCTGC-CCCCTAAGTCTACCTGTC-
1 -CCCCTTAAGTCTGCCTA-TCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCG
*
970800 AGCTTTGA-CCTGAAGACATCTTC-
64 A-CTTTGACCCT--AGAGAT-TTCT
* * * * * * * * *
970823 CCCCTTTAAGTCTGCCTGTCGACTTTGACCCTAGATACTTCGTCCCCCTGAAGTCTGCTTGTCAA
1 CCCC-TTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* *
970888 CTTTGACCTTAGAGACATCTTCC
65 CTTTGACCCTAGAG--AT-TTCT
* * * * * * *
970911 CCCCTCAAGTCT-CGCTGTCGACTTTGACCTTGGAGACTTCCTCACCCTTAAGTCTGCCTGTCGG
1 CCCCTTAAGTCTGC-CTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* * * *
970975 TTTTGACCGT-GAAAACTTCAT
65 CTTTGACCCTAG-AGATTTC-T
* * * * * * * *
970996 CCCTTTTAAGTCTGCCTATCAGCTTTGACTTTGGAGACTTCGTCCCCCTTAAGTCTGCCAGTCGG
1 CCC-CTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* * *
971061 CTTTGACCTTTGAGACTTTTT
65 CTTTGACCCTAGAGA-TTTCT
* * * * * * * * **
971082 CCCCCTTTAAGTCAGCTTGTCGGCTTTCACAC-TAAAGACTTCGTCTCCCTTAAGTTTGCCAATC
1 -CCCC-TTAAGTCTGCCTATCGGCTTTGAC-CTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTC
* * *
971146 GGCTTTGA-CCT-GAAAACTTTTTCC
63 GACTTTGACCCTAG-AGA---TTTCT
* * * * * *
971170 CCCCTTAAGTTTGCCTATCGGCTTTGACCCTAGAGACTTTTTTGCCTTTAAGTCTG-CTAGTCTA
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCT-GTCGA
* * * *
971234 CTTTGACCTTGGAAACTTCGT
65 CTTTGACCCTAGAGATTTC-T
** * * * * * * * *
971255 CCCCTTTAAGTCTGTTTGTCGGCTTTGACCTTGGAGACTT-TGCCCCCCTGAAATCTACCTGTGG
1 CCCC-TTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCT-TCGCCCTTAAGTCTGCCTGTCG
* * * *
971319 ACTTTGACCTTGGGGACTTCTT
64 ACTTTGACCCTAGAGATTTC-T
* * * * * * * * * * *
971341 CCTCATTAAGTCGGCCTGTCGGCTTTGACCCTGGAAAATTTTTTGCCCTTTAGTCTGCTTGTC-A
1 CC-CCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* * * *
971405 GCTTTGACCGTGGAAATTTTTT
65 -CTTTGACCCTAGAGA-TTTCT
* * * * * * *
971427 CCCCTTTAAGTCTGCCTGTCAGCGTTGATGC-TAGAGACTTTTTCG-CTTGTAAGTC-ACCTTGT
1 CCCC-TTAAGTCTGCCTATCGGCTTTGA-CCTTAGAGACTTCTTCGCCCT-TAAGTCTGCC-TGT
* * *
971489 CGGCTTT--CCCATTTGAGACTTCT
62 CGACTTTGACCC--TAGAGATTTCT
* * *
971512 ----TTATAGTTTGCCTATCGGCTTTGACCTTAGAGACTTTTTC-CCCTTTAAGTCTG-TTGATC
1 CCCCTTA-AGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCC-TTAAGTCTGCCTG-TC
* * *
971571 -AGCTTTAACCCTGGAGACTTCTTT
63 GA-CTTTGACCCTAGAGA-TT-TCT
* * * * * * * * *
971595 CCGCTTAAGT-TTCCGTGTCGACTTTGACCCT-GAAAACTTCCTCTCCCTTAAGT-T---TGTTG
1 CCCCTTAAGTCTGCC-TATCGGCTTTGACCTTAG-AGACTTCTTCGCCCTTAAGTCTGCCTGTCG
* *
971654 GCTTTGACCCTAGAGACTTCGTT
64 ACTTTGACCCTAGAGATTTC--T
* * * * * * * * * * *
971677 CCCTTTAAATCTGCTTGTCGGCTTTCACCCTGGAGACTTCGTTC-CCTTTAAATCTGCTTGTCGG
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTC-TTCGCCCTTAAGTCTGCCTGTCGA
971741 CTTTGA-CCTAG-GATACTATCTTT
65 CTTTGACCCTAGAGAT--T-TC--T
* * * ** * ** * *** ** **
971764 ACCCTT-TGTCTTCCCGTCGGCTTAGACCCGAGAGACCTC-TCTAACTTTTGTCTATC-GTCGAC
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGAC
* ** * *
971826 TTCGACTTTAGGGACTTCT
66 TTTGACCCTAGAGATTTCT
** ** * * * *** *** ** * ** *
971845 CTATCTTTTGTCTACCTGTCGGCTTAGACCAGGGAGACTTC-TCTATCTTTTGTTTGCCAATCAA
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* * *
971909 CTTTGA--CTTGGGATACTCCTTT
65 CTTTGACCCTAGAGAT--T--TCT
* * * * * * ** ** * ** * * * *
971931 GCCCTT-CGTATACCTGTCGACTTAAACCCGAGAGA-TCGCTTC-ATCTCAAGTTTGCCTTTTGA
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACT-TCTTCGCCCTTAAGTCTGCCTGTCGA
* * *
971993 CTTTGACCTTGGAGACTTCTTT
65 CTTTGACCCTAGAGA-TT-TCT
* * * * * *
972015 GCCCTTAAGTTTGCTTGTCGGCTTTGA-CTCTAGAGACTT-TGTCCCCCTTAAGTCTGCCTATCG
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCT-TAGAGACTTCT-TCGCCCTTAAGTCTGCCTGTCG
* * *
972078 ACTTTGACCATGGAGACTTCTT
64 ACTTTGACCCTAGAGATTTC-T
* * * * * * * * *
972100 CGCTCTTAAGTCAGCCTATTGGCTTTGACCCTGGAGACTTCATCCCCCTTAAGTCTGCCAGTCGG
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* *
972165 CTTAGACCC-AGGAGACTTCT
65 CTTTGACCCTA-GAGATTTCT
** *** * ** ** * * * * *
972185 CTATCTTTTCTCTACCCGTCAACTTTGA-CTTGAGAGACTTCTTTGTCCTT-CGTCTACCCGTCG
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTT-AGAGACTTCTTCGCCCTTAAGTCTGCCTGTCG
* ** * * *
972248 GCTTAAACTC-ATGAGACTGCTT
64 ACTTTGACCCTA-GAGATTTC-T
** * * * * * *
972270 CATCTCAAGTCTGCCTATCGGCTTTAACCTTAGAAACTTCTTCGCCCTTTAGTCTACTTGTCGAC
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGAC
*
972335 TTTAACCCTAGAGATTTCTTT
66 TTTGACCCTAGAGATTTC--T
* * ** * * ** * * * *
972356 GCCTTTTGGTCTACATGCCGGCTTTGACCTTGGAAACTTCTTCGCCCTTAAGTTTACCTGTCGAC
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGAC
* *
972421 TTTGACCCTAGATACTTCTT
66 TTTGACCCTAGAGATTTC-T
* ** * * * * * * * *
972441 CGCCCTTAAGT-TCGCATGCCGG-ATTCACCTTGGAGACTTTTTTGCCCTTTAGAT-TACCTATC
1 C-CCCTTAAGTCT-GCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAG-TCTGCCTGTC
* * *
972503 GGCTTTGACCTTAGAGACTTCTT
63 GACTTTGACCCTAGAGATTTC-T
* * * * * * * *
972526 CGCTCTTAAGTCTGCCAATCGGCTTTCACCCTAAAGACTTCTTCGTCCTTTAGTTTG-CTAGTCG
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCT-GTCG
*
972590 ACTTTGACCTTAGAGATTTCTT
64 ACTTTGACCCTAGAGATTTC-T
* * * * *
972612 CCTCTTTAAGTCTGCCTATCGGCTTTGATCC-TGGATACTT-TCTCACCCTTAAGTCTGCCTATC
1 CC-CCTTAAGTCTGCCTATCGGCTTTGA-CCTTAGAGACTTCT-TCGCCCTTAAGTCTGCCTGTC
* *
972675 AACTTTGACCCTAGAGACTTCATT
63 GACTTTGACCCTAGAGATTTC--T
* ** * * * ** *
972699 CCCTTTAAGTCTGTTTATCAGCTTT-AACTCATGAGACTTTCTTTACCCTCT-A-TCT-TCTCGT
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTA-GAGAC-TTCTTCGCCCT-TAAGTCTGCCT-GT
* * * * * **
972760 TGGCTTAGACCCGAAAGACCTCT
62 CGACTTTGACCCTAGAGATTTCT
* ** * * * ** *** ** ** *
972783 CTACCTTTTGTTTGTC-GTCGG-TTTAGA-CTCGGGAGACTTCTT-TATCTTTTGTCTGCCCATT
1 C-CCCTTAAGTCTGCCTATCGGCTTT-GACCT-TAGAGACTTCTTCGCCCTTAAGTCTGCCTGTC
* * *
972844 GGCTTAGACCCGAGAGACTTT-T
63 GACTTTGACCCTAGAGA-TTTCT
** ** ** * ** * * * * *
972866 CTATCTTTTGTCTGCCTATTAGCTCTGACCCGAG-GTGC-TCTTTTGCCCTT-CGTCTACCCGTC
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAG-ACTTC-TTCGCCCTTAAGTCTGCCTGTC
** * *
972928 -AGCTTAAACTCGAGAGACTACTTCAT
63 GA-CTTTGACCCTAGAGA-T--TTC-T
* * * * * * *
972954 -CTCTT--GTCTACCTGTCGGCTTTGACAC-TAAAGACTTCTTCCCCCCTTAAGTCTGCTTGTAG
1 CCCCTTAAGTCTGCCTATCGGCTTTGAC-CTTAGAGACTTCTT-CGCCCTTAAGTCTGCCTGTCG
* * * * *
973015 GCTTTGACCTTGGAAACTTCTT
64 ACTTTGACCCTAGAGATTTC-T
* * * * * * *
973037 CCCTTCTTAAGTCTGCCTGTCAGCTTTGACTTTGGAGACTTCCTCACCCTTAAATCTGCCTGTCG
1 CCC--CTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCG
* * * *
973102 ACTTTGACCTTGGAAACTTTGT
64 ACTTTGACCCTAGAGA-TTTCT
* * * * * * * * *
973124 CCATCTTAAGTTTGCCTGTCAGCTTTGCCCCCTAGAGACTTCATCCCCCTTAAGTCTG-CTAGTT
1 CC-CCTTAAGTCTGCCTATCGGCTTTG-ACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCT-GTC
* * * * *
973188 GGCTTTGACCTTGGAAACTTTTTCC
63 GACTTTGACCCTAGAGA---TTTCT
* * * * * * * * ** *
973213 CCCCTTAAGTCTGCGTGTCAGCTTTTACCCTAGAGACTTCGTCCCCCTTAAGTCTACCAATCGAG
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGAC
* * * *
973278 TTTGACCATTGAAACTTCAT
66 TTTGACCCTAGAGATTTC-T
* * ** * * * * * * * *
973298 CCCCCTTAAGTTTGCCTGTCAACTTTCACCTTGGAGACTTCGTCCCCCTTAAGTTTTCCAGTCGG
1 -CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
*
973363 CTTTGACCCTAGAGACTTCTT
65 CTTTGACCCTAGAGATTTC-T
* * * * * * * * * *
973384 CCCCCTAAGTTTGCTTGTCAGCTTTGACC-TGGAGACATT-TTCCCCCCTTAAGTTTGCCTCTTG
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGAC-TTCTT-CGCCCTTAAGTCTGCCTGTCG
* * * *
973447 GCTTTGACCCTGGATACTTTTTT
64 ACTTTGACCCTAGAGA--TTTCT
* * * * * * * * * * * *
973470 ACCCTTAAGTATGCC-AGCCAGCTTTGACCCTGGAAACTTCGTCCCCCTGAAGTCTGCTTGTCAA
1 CCCCTTAAGTCTGCCTA-TCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* * *
973534 CTTTGACCTTGGAGACTTCTT
65 CTTTGACCCTAGAGATTTC-T
* ** * * * * *
973555 CCTCCCTCAAGTCTGGCC-ATCAACTTTGATCC-TGGAGACTTCCTCACCCTTAAGTCTGCTTAT
1 -C-CCCTTAAGTCT-GCCTATCGGCTTTGA-CCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGT
* *
973618 CGACTTTGA-CCTGAGAAACTTTGT
62 CGACTTTGACCCT-AGAGA-TTTCT
* ** * * * * *
973642 CCCTCTTAAGTCTGCCTGTTAGCTTTGA-CTCTGGAGACTTCGTCCCCCTTAAGTTTGCCAGTCG
1 CCC-CTTAAGTCTGCCTATCGGCTTTGACCT-TAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCG
* * * *
973706 GCTTTGACCTTGGAGACTTCTT
64 ACTTTGACCCTAGAGATTTC-T
* * * * * ** * * *
973728 CCCCCTTAAGTCAGCTTGTCAGCTTTTACAC-TAGAGACTTCGCCCCCCTTATGTCTG-CTACTC
1 -CCCCTTAAGTCTGCCTATCGGCTTTGAC-CTTAGAGACTTCTTCGCCCTTAAGTCTGCCT-GTC
* * *
973791 GGCTTTGACCCT-GAAAACTTTTT
63 GACTTTGACCCTAG-AGA-TTTCT
* * * * * * * *
973814 CCCTCTTAAATCTACCTGTCGACTTTGACCCTAGAGACTTTTTTGCCTTTAAGTCTG-CTAGTCG
1 CCC-CTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCT-GTCG
* * * * *
973878 GCTTTGACCTTGGAAACTTCGT
64 ACTTTGACCCTAGAGATTTC-T
* * * * * * *
973900 CTCCTTTAAGTCTGCCTATCGGATTTTACCATAGAGACTTC-GCCCCCTTTAAGTCTACCTGTCG
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCC-TTAAGTCTGCCTGTCG
* * * *
973964 GCTTTGACCTTCGAGACTTCTT
64 ACTTTGACCCTAGAGATTTC-T
* * * * * *
973986 CCCCTATTAAGTCTGCCTGTCGGCTTTGACCCTGGA-AGCTT-TCTCACCCTTAAGTCTCCCTAT
1 CCCC--TTAAGTCTGCCTATCGGCTTTGACCTTAGAGA-CTTCT-TCGCCCTTAAGTCTGCCTGT
* *
974049 C-AGCTTTGACCCTAAAGACTTCTTT
62 CGA-CTTTGACCCTAGAGA-TT-TCT
* ** * * * * * * * **
974074 GCCCAAAAGTTTACCTATCGGCTTTGACCTTGGAGACTCCTTC-CTACTTATGTCTACCTACCGA
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGC-CCTTAAGTCTGCCTGTCGA
* * *
974138 CTTTAACCTTAGAGACTTCATT
65 CTTTGACCCTAGAGATTTC--T
* * ** ** ** * * * *
974160 CCCCTTAAGTCTGCCTATTGGCTTAGACCCAAGAGACTTTCTTTACCCTT-TCTCTTCTTGTGGG
1 CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGAC-TTCTTCGCCCTTAAGTCTGCCTGTCGA
* **
974224 CTTAGACCCGGGAGATTTCT
65 CTTTGACCCTAGAGATTTCT
** ** * * * * * * *** ** * *
974244 CTATCTTTTGTCTGCTTGTAGGCTTAGA-C-TCGATGGGCTTC-TCTATCTTTTGTTTGCCTAT-
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGA--GACTTCTTCGCCCTTAAGTCTGCCTGTC
* * * * *
974305 TAGCTTAGA-CTTGGGAGACTTCTT
63 GA-CTTTGACCCT-AGAGATTTC-T
*** ** ** ** ** * * * *
974329 AATCTTTTGTCTG-CTCGCCAACTTTGACCTGGGATAC-TCTTTTGCCCTTCA-TCTACCCT-TC
1 CCCCTTAAGTCTGCCT-ATCGGCTTTGACCTTAGAGACTTC-TTCGCCCTTAAGTCT-GCCTGTC
* * * * *
974390 -AGC-TTAAACTTGAGGGATTGCT
63 GA-CTTTGACCCT-AGAGATTTCT
** * * * * * *
974412 ACATCTCAAGTCTGCCTGTCGGCTTTGACTTTAGAGACTTCTTCGCCCTAAAGTCTACCTATCGA
1 -CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
* * * *
974477 CTCTGACCCTGGTGACTTCAT
65 CTTTGACCCTAGAGATTTC-T
* * *
974498 CCACCTTAAGTCTGCCTATAGACTTTGACCTTAGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCG
1 CC-CCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCC-CTTAAGTCTGCCTGTCG
* *
974563 ACTTTGAGCCTAAAGATTTCCT
64 ACTTTGACCCTAGAGATTT-CT
* * * *
974585 CACCCTTAAGTATGCCTGTCGGCTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCTTGTCGA
1 C-CCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGA
*
974650 CTTTGTCCCTAGAGATTTCT
65 CTTTGACCCTAGAGATTTCT
* * * * *
974670 CCTGCCTTAAGTTTGCCTATCGGTTTTGACCCTAAAGACTTCGTTC-CCCTTAAGT-TCGCTTGT
1 CC--CCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTC-TTCGCCCTTAAGTCT-GCCTGT
974733 CGACTTT
62 CGACTTT
974740 TATGCATTAG
Statistics
Matches: 3141, Mismatches: 862, Indels: 515
0.70 0.19 0.11
Matches are distributed among these distances:
80 7 0.00
81 50 0.02
82 61 0.02
83 120 0.04
84 328 0.10
85 425 0.14
86 1453 0.46
87 601 0.19
88 90 0.03
89 6 0.00
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (84 bp):
CCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCGAC
TTTGACCCTAGAGATTTCT
Found at i:974734 original size:129 final size:130
Alignment explanation
Indices: 972972--974739 Score: 367
Period size: 129 Copynumber: 13.7 Consensus size: 130
972962 TACCTGTCGG
* * * * * * * * * *
972972 CTTTGACACTAAAGACTTCTTCCCCCCTTAAGTCTGCTTGTAGGCTTTGACCTTGGAA-ACTTCT
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATCGACTTTGACCCT-AAAGACTTCC
* * * * * *
973036 TC-CCTTCTTAAGTCTGCCTGTC-AGCTTTGACTTTGGAGACTTCCTCACCCTTAAATCTGCCTG
65 TCACC--CTTAAGTATGCCTGTCGA-CTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTA
*
973099 TCGA
127 TAGA
* * * * * * * *
973103 CTTTGACCTTGGAAACTT-TGT-CCATCTTAAGTTTGCCTGTC-AGCTTTGCCCCCTAGAGACTT
1 CTTTGACCCTAGAGACTTCT-TCCCCTCTTAAGTCTGCCTATCGA-CTTTG-ACCCTAAAGACTT
* * * * * * * * *
973165 CATCCCCCTTAAGTCTG-CTAGTTGGCTTTGACCTTGGAAACTTTTTCCCCCCTTAAGTCTGCGT
63 CCTCACCCTTAAGTATGCCT-GTCGACTTTGACCTTGGAGACTTCTT-CGCCCTTAAGTCTGCCT
*
973229 GTCAG-
126 AT-AGA
* * * * * * * *
973234 CTTTTACCCTAGAGACTTCGTCCCC-CTTAAGTCTACCAATCGAGTTTGACCATTGAA-ACTTCA
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATCGACTTTGACC-CTAAAGACTTCC
* * * * * * * * *
973297 TCCCCCTTAAGTTTGCCTGTCAACTTTCACCTTGGAGACTTCGTCCCCCTTAAGTTTTCC-AGTC
65 TCACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTA-TA
*
973361 GG
129 GA
* * * **
973363 CTTTGACCCTAGAGACTTCTTCCCC-C-TAAGTTTGCTTGTC-AGCTTTGA-CCTGGAGACATTT
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATCGA-CTTTGACCCTAAAGAC---T
* * * * * * * ** *
973424 TCC-C-CCCTTAAGTTTGCCTCTTGGCTTTGACCCTGGATACTTTTTTACCCTTAAGTATGCC-A
62 TCCTCACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTA
*
973486 GCCAG-
127 --TAGA
* * * * * * * * ** *
973491 CTTTGACCCTGGAAACTTCGTCCCC-CTGAAGTCTGCTTGTCAACTTTGACCTTGGAGACTTCTT
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATCGACTTTGACCCTAAAGACTTCCT
* * * * * * * *
973555 CCTCCCTCAAGTCTGGCC-ATCAACTTTGATCC-TGGAGACTTCCTCACCCTTAAGTCTGCTTAT
66 -CACCCTTAAGTAT-GCCTGTCGACTTTGA-CCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTAT
*
973618 CGA
128 AGA
* * * * **
973621 CTTTGA-CCTGAGAAACTT-TGT-CCCTCTTAAGTCTGCCTGT-TAGCTTTGACTCTGGAGACTT
1 CTTTGACCCT-AGAGACTTCT-TCCCCTCTTAAGTCTGCCTATCGA-CTTTGACCCTAAAGACTT
* * * * * * * * *
973682 CGTCCCCCTTAAGTTTGCCAGTCGGCTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCAGCTTGT
63 CCTCACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTAT
973747 CAG-
128 -AGA
* * * * * * *
973750 CTTTTACACTAGAGACTTC-GCCCCCCTTATGTCTG-CTACTCGGCTTTGACCCTGAAA-ACTTT
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTA-TCGACTTTGACCCT-AAAGACTTC
* * * * * * * * *
973812 TTC-CCTCTTAAATCTACCTGTCGACTTTGACCCTAGAGACTTTTTTGCCTTTAAGTCTG-CTAG
64 CTCACC-CTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTA-
* *
973875 TCGG
127 TAGA
* * * * * * * *
973879 CTTTGACCTTGGAAACTTCGTCTCCT-TTAAGTCTGCCTATCGGA-TTTTACCATAGAGACTTCG
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATC-GACTTTGACCCTAAAGACTTC-
* * * *
973942 C-C-CCCTTTAAGTCTACCTGTCGGCTTTGACCTTCGAGACTTCTTC-CCCTATTAAGTCTGCCT
64 CTCACCC-TTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCC--TTAAGTCTGCCT
* * *
974004 GTCGG
126 ATAGA
* * *
974009 CTTTGACCCTGGA-AGCTT-TCTCACC-CTTAAGTCTCCCTATC-AGCTTTGACCCTAAAGACTT
1 CTTTGACCCTAGAGA-CTTCT-TCCCCTCTTAAGTCTGCCTATCGA-CTTTGACCCTAAAGACTT
* ** ** * * * * * * * *
974070 CTTTGCCCAAAAGTTTACCTATCGGCTTTGACCTTGGAGACTCCTTC-CTACTTATGTCTACCTA
63 CCTCACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGC-CCTTAAGTCTGCCTA
**
974134 CCGA
127 TAGA
* * * * *
974138 CTTTAACCTTAGAGACTTCATT-CCC-CTTAAGTCTGCCTATTGGCTTAGACCC-AAGAGACTTT
1 CTTTGACCCTAGAGACTTC-TTCCCCTCTTAAGTCTGCCTATCGACTTTGACCCTAA-AGAC-TT
* * ** * * * * * * ** * *** ** * *
974200 CTTTACCCTT-TCTCTTCTTGTGGGCTTAGACCCGGGAGATTTC-TCTATCTTTTGTCTGCTTGT
63 CCTCACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTAT
*
974263 AGG
128 AGA
* * * * ** ** * * * * **
974266 CTTAGACTCGATG-GGCTTC-T-CTATCTTTTGTTTGCCTAT-TAGCTTAGA-CTTGGGAGACTT
1 CTTTGACCCTA-GAGACTTCTTCCCCTCTTAAGTCTGCCTATCGA-CTTTGACCCT-AAAGACTT
* ** ** * * * * * * * *
974326 -CTTAATCTTTTGTCTG-CTCGCCAACTTTGACCTGGGATAC-TCTTTTGCCCTTCA-TCTACCC
63 CCTCACCCTTAAGTATGCCT-GTCGACTTTGACCTTGGAGACTTC-TTCGCCCTTAAGTCT-GCC
974387 T-TCAG-
125 TAT-AGA
* * * * * * * * * ** *
974392 C-TTAAACTTGAGGGA-TTGC-T-ACATCTCAAGTCTGCCTGTCGGCTTTGACTTTAGAGACTTC
1 CTTTGACCCT-AGAGACTT-CTTCCCCTCTTAAGTCTGCCTATCGACTTTGACCCTAAAGACTTC
* * * * * * * * * *
974453 TTCGCCCTAAAGTCTACCTATCGACTCTGACCCTGGTGACTTCATC-CACCTTAAGTCTGCCTAT
64 CTCACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGC-CCTTAAGTCTGCCTAT
974517 AGA
128 AGA
* * * *
974520 CTTTGACCTTAGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCGACTTTGAGCCTAAAGATTTCCT
1 CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATCGACTTTGACCCTAAAGACTTCCT
* * * *
974585 CACCCTTAAGTATGCCTGTCGGCTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCTTGTCGA
66 CACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTATAGA
* * * * **
974650 CTTTGTCCCTAGAGATTTC-TCCTGC-CTTAAGTTTGCCTATCGGTTTTGACCCTAAAGACTTCG
1 CTTTGACCCTAGAGACTTCTTCC-CCTCTTAAGTCTGCCTATCGACTTTGACCCTAAAGACTTC-
* *
974713 TTC-CCCTTAAGT-TCGCTTGTCGACTTT
64 CTCACCCTTAAGTAT-GCCTGTCGACTTT
974740 TATGCATTAG
Statistics
Matches: 1191, Mismatches: 343, Indels: 208
0.68 0.20 0.12
Matches are distributed among these distances:
125 14 0.01
126 59 0.05
127 70 0.06
128 141 0.12
129 406 0.34
130 406 0.34
131 89 0.07
132 6 0.01
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (130 bp):
CTTTGACCCTAGAGACTTCTTCCCCTCTTAAGTCTGCCTATCGACTTTGACCCTAAAGACTTCCT
CACCCTTAAGTATGCCTGTCGACTTTGACCTTGGAGACTTCTTCGCCCTTAAGTCTGCCTATAGA
Found at i:974847 original size:42 final size:42
Alignment explanation
Indices: 974763--974895 Score: 117
Period size: 42 Copynumber: 3.2 Consensus size: 42
974753 TTCTTTGACC
* * * * ** * *
974763 TTTGTCTGTCCATCGGCTTAGACCCAGGAGACCTCCCTATCT
1 TTTGTCTGCCCGTCAGCTTAGACCGAGGAGATTTCTCAATCT
* * *
974805 TTTGTCTGCCTGTCGGTTTAGACTCGA-GAGACTTT-TCAATCT
1 TTTGTCTGCCCGTCAGCTTAGAC-CGAGGAGA-TTTCTCAATCT
* *
974847 TTTATCTGCCCGTCAGCTTAGACCTAGGAGATTTCTCAATCT
1 TTTGTCTGCCCGTCAGCTTAGACCGAGGAGATTTCTCAATCT
974889 TTTGTCT
1 TTTGTCT
974896 ACCCATCAAC
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
41 5 0.07
42 64 0.89
43 3 0.04
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (42 bp):
TTTGTCTGCCCGTCAGCTTAGACCGAGGAGATTTCTCAATCT
Found at i:975038 original size:43 final size:42
Alignment explanation
Indices: 974990--975138 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 42
974980 GCCTGTCGGT
* *
974990 TTTGACACTGGAGACTTCTTTCTCCTTAAGTCTGCTTATCGAC
1 TTTGACCCTAGAGACTTCTTTCTCCTTAAGTCTGCTTATC-AC
* * * *
975033 TTTGACCCTAGAGACTTCTTCCCTCCTTAAGTTTGCCTATCAT
1 TTTGACCCTAGAGACTTCTT-TCTCCTTAAGTCTGCTTATCAC
* * * *
975076 TTTGACCCTACAGACTTC-CTCACCCTTAAGTCTGCTTGTCAGC
1 TTTGACCCTAGAGACTTCTTTC-TCCTTAAGTCTGCTTATCA-C
*
975119 TTTGACCCTAGAAACTTCTT
1 TTTGACCCTAGAGACTTCTT
975139 ACCCTTCAAC
Statistics
Matches: 85, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
41 1 0.01
42 15 0.18
43 52 0.61
44 17 0.20
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (42 bp):
TTTGACCCTAGAGACTTCTTTCTCCTTAAGTCTGCTTATCAC
Found at i:975153 original size:43 final size:43
Alignment explanation
Indices: 975013--975168 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 43
975003 ACTTCTTTCT
* * * * * *
975013 CCTTAAGTCTGCTTATC-GACTTTGACCCTAGAGACTTCTTCCC
1 CCTTAACTCTGCCTATCAG-CTTTGACCCTACAAACTTCCTCAC
* * * *
975056 TCCTTAAGTTTGCCTATCA-TTTTGACCCTACAGACTTCCTCAC
1 -CCTTAACTCTGCCTATCAGCTTTGACCCTACAAACTTCCTCAC
* * * * *
975099 CCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAAACTT-CTTAC
1 CCTTAACTCTGCCTATCAGCTTTGACCCTACAAACTTCCTCAC
*
975141 CCTTCAACTCTGCCTATCAGCTTAGACC
1 CCTT-AACTCTGCCTATCAGCTTTGACC
975169 TAAAAAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 23 0.25
43 54 0.59
44 15 0.16
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.35
Consensus pattern (43 bp):
CCTTAACTCTGCCTATCAGCTTTGACCCTACAAACTTCCTCAC
Found at i:975306 original size:42 final size:42
Alignment explanation
Indices: 975203--975328 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 42
975193 CTACCCGTTG
* * **
975203 ACTTAGACCCGAGAGGCCTT-TCTATCTTTTTTCTGCCCGTTG
1 ACTTAGACCCGAGA-GACTTCTCTATCTTTTGTCTGCCCGTCA
* * *
975245 GC-TAGACTCAAGAGACTTCTCTATCTTTTGTCTGCCCGTCA
1 ACTTAGACCCGAGAGACTTCTCTATCTTTTGTCTGCCCGTCA
* * *
975286 ACTTAGACCCGGGAGACTTCTCTATCTTTTGCCTGCCCATCA
1 ACTTAGACCCGAGAGACTTCTCTATCTTTTGTCTGCCCGTCA
975328 A
1 A
975329 ATTTGACTCG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
40 4 0.06
41 29 0.42
42 36 0.52
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.34
Consensus pattern (42 bp):
ACTTAGACCCGAGAGACTTCTCTATCTTTTGTCTGCCCGTCA
Found at i:975341 original size:42 final size:42
Alignment explanation
Indices: 975256--975345 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
975246 CTAGACTCAA
* * *
975256 GAGACTTCTCTATCTTTTGTCTGCCCGTCAACTTAGACCCGG
1 GAGACTTCTCTATCTTTTGCCTGCCCATCAAATTAGACCCGG
* *
975298 GAGACTTCTCTATCTTTTGCCTGCCCATCAAATTTGACTCGG
1 GAGACTTCTCTATCTTTTGCCTGCCCATCAAATTAGACCCGG
975340 GAGACT
1 GAGACT
975346 CCTTTGCCCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (42 bp):
GAGACTTCTCTATCTTTTGCCTGCCCATCAAATTAGACCCGG
Found at i:975550 original size:44 final size:42
Alignment explanation
Indices: 975412--975711 Score: 213
Period size: 43 Copynumber: 7.0 Consensus size: 42
975402 TGCCTATCGA
* * * *
975412 CTTTGACTCTAAAGACTTTTTCGCCCTTAAGTCTGCCTATCGG
1 CTTTGACCCTAAAGACTTCTTC-CCCTTAAGTCTGCCTGTCAG
* * * * *
975455 CTTTGACCTTAGAGACTTCGTCCCCCTTAAGTCTGCTTGTTAG
1 CTTTGACCCTAAAGACTTC-TTCCCCTTAAGTCTGCCTGTCAG
* *
975498 CTTTGACCCTAAAGACTTCTTCCTCCCTTAAGTTTGCCTGTCAA
1 CTTTGACCCTAAAGACTTCTT-C-CCCTTAAGTCTGCCTGTCAG
* * * * * * * *
975542 ATTCGACCCTACAGACTTCCTCACCTTTAAATCTACCTGTCGG
1 CTTTGACCCTAAAGACTTCTTC-CCCTTAAGTCTGCCTGTCAG
** *
975585 CTTTGACCCTGGAGACTTCTTCGCCCTTAAGTTTGCCTGTCAG
1 CTTTGACCCTAAAGACTTCTTC-CCCTTAAGTCTGCCTGTCAG
* * ** * * * *
975628 CTTTGATCTTGGAGATTTCTTCCCCCTTATGTCTGCTTGTCGG
1 CTTTGACCCTAAAGACTTCTT-CCCCTTAAGTCTGCCTGTCAG
* * ** *
975671 CTTTGACCCTCAAGGCTTCATTCTTCTTAAGTTTGCCTGTC
1 CTTTGACCCTAAAGACTTC-TTCCCCTTAAGTCTGCCTGTC
975712 GCCATTAACC
Statistics
Matches: 196, Mismatches: 56, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
42 1 0.01
43 157 0.80
44 38 0.19
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (42 bp):
CTTTGACCCTAAAGACTTCTTCCCCTTAAGTCTGCCTGTCAG
Found at i:975700 original size:86 final size:85
Alignment explanation
Indices: 975412--975711 Score: 285
Period size: 86 Copynumber: 3.5 Consensus size: 85
975402 TGCCTATCGA
* * * * * * *
975412 CTTTGACTCTAAAGACTTTTTCGCCCTTAAGTCTGCCTATCGGCTTTGACCTTAGAGACTTCGTC
1 CTTTGACCCTAAAGACTTCTTC-TCCTTAAGTTTGCCTGTCAGCTTTGACCTTAGAGACTTCCTC
**
975477 CCCCTTAAGTCTGCTTGTTAG
65 CCCCTTAAGTCTGCTTGTCGG
** * * *
975498 CTTTGACCCTAAAGACTTCTTCCTCCCTTAAGTTTGCCTGTCAAATTCGACCCTACAGACTTCCT
1 CTTTGACCCTAAAGACTTCTT-CT-CCTTAAGTTTGCCTGTCAGCTTTGACCTTAGAGACTTCCT
* * * * *
975563 CACCTTTAAATCTACCTGTCGG
64 CCCCCTTAAGTCTGCTTGTCGG
** * * * * *
975585 CTTTGACCCTGGAGACTTCTTCGCCCTTAAGTTTGCCTGTCAGCTTTGATCTTGGAGATTTCTTC
1 CTTTGACCCTAAAGACTTCTTC-TCCTTAAGTTTGCCTGTCAGCTTTGACCTTAGAGACTTCCTC
*
975650 CCCCTTATGTCTGCTTGTCGG
65 CCCCTTAAGTCTGCTTGTCGG
* * *
975671 CTTTGACCCTCAAGGCTTCATTCTTCTTAAGTTTGCCTGTC
1 CTTTGACCCTAAAGACTTC-TTCTCCTTAAGTTTGCCTGTC
975712 GCCATTAACC
Statistics
Matches: 168, Mismatches: 42, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
86 99 0.59
87 69 0.41
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (85 bp):
CTTTGACCCTAAAGACTTCTTCTCCTTAAGTTTGCCTGTCAGCTTTGACCTTAGAGACTTCCTCC
CCCTTAAGTCTGCTTGTCGG
Found at i:975861 original size:42 final size:42
Alignment explanation
Indices: 975741--975894 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
975731 TTCTATACCC
*
975741 TTTGTTTGCCCGTCAGCTTAGACTTGGGAGACCTT-TCTATCT
1 TTTGTTTGCCCGTCAGCTTAGACTTGGGAGA-CTTCTTTATCT
* * * *
975783 TTTGTCTACCCGTCAGCTAAGACTTGGGAGATTTCTTTATCT
1 TTTGTTTGCCCGTCAGCTTAGACTTGGGAGACTTCTTTATCT
* * *
975825 TTTGTTTGCTCGTCAGCTTAGACCTT-GAAGGCTTCTTTATCT
1 TTTGTTTGCCCGTCAGCTTAGA-CTTGGGAGACTTCTTTATCT
** * *
975867 TTTGTTTGCCTATCAGCTTTGACATGGG
1 TTTGTTTGCCCGTCAGCTTAGACTTGGG
975895 GTACTCTTTT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 4 0.04
42 84 0.92
43 3 0.03
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (42 bp):
TTTGTTTGCCCGTCAGCTTAGACTTGGGAGACTTCTTTATCT
Found at i:976139 original size:555 final size:548
Alignment explanation
Indices: 975013--977066 Score: 1966
Period size: 555 Copynumber: 3.7 Consensus size: 548
975003 ACTTCTTTCT
* * * * * * * *
975013 CCTT-AAGTCTGCTTATCGACTTTGACCCTAGAGACTTCTTCCCTCCTTAAGTTTGCCTATCA-T
1 CCTTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCGC-CCTTAAATCTGCCTGTCAGC
* * * * * * *
975076 TTTGACCCTACAGACTTCCTCAC-CCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAAACTTC-TT
65 TTTGATCTTAGAGACTTCTTC-CTCCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATT
* * * * * * * * *
975139 AC-CCTTCAACTCTGCCTATCAG-CTTAGACCTAAAAAATTTTCTTTACCCTTTATCTACCCGT-
129 -CTTCTT-AAGTCTGCCTGTCAGCCTTA-ACCCAAGAGACTTTCTTTACCCTTTGT-TTCCCGTC
* ** * * * * * *
975201 TGACTTAGACCCGAGAGGCCTTTCTATCTTTTTTCTGCCCGTTGGC-TAGACTCAAGAGACTTCT
190 AG-CTTAGACTTGGGAGACCTCTCTATCTTTTGTCTACCCGTCGGCTTAGACTCAAGAGACTTCT
* * * *
975265 CTATCTTTTGTCTGCCCGTCAACTTAGACCCGGGAGACTTCTCTATCTTTTGCCTGCCCATCAAA
254 CTATCTTTTGTCTGCCCGTCAGCTTAGACCTGGGAGACTTCTCTATCTTTTGTCTGCCCATCAAC
* * * * * *
975330 TTTGACTCGGGAGACTCCTTTGCCCTTTGTTTACCCGTT-GAATAAACCCAGGAGACTACTTCAT
319 TTTGACTAGGG-GACTCTTTTGCCCTTCGTCTACCCATTGGATTAAACCCAGGAGACTACTTCAT
* * * * *
975394 CTCAAGTTTGCCTATCGACTTTGACTCTAAAGACTTTTTCGCCCTTAAGTCTGCCTATCGGCTTT
383 CTCAAGTCTGCCTGTCGACTTTGACTCTAGAGA-TTTTTCGCCCTTAAGTCTGCTTGTC-GCTTT
* * * * * *
975459 GACCTTAGAGACTTCGTCCCCCTTAAGTCTGCTTGTTAGCTTTGACCCT-AAAGACTTCTTCCTC
446 GACCAT-GAGACTTCGTCCCCCTTAAGTCTACCTGTTGGCTTTGACCATGGAA-ACTTCTTCC-C
* ** * * *
975523 CCTTAAGTTTGCCTGTCAAATTCGACCCTACAGACTTCCTCA
508 CCTTAAGTTTGCTTGTCAGCTTTGACCCTAGAGA-TTTCTCA
* * * *
975565 CCTTTAAA-TCTACCTGTCGGCTTTGACCCTGGAGACTTCTTCGCCCTTAAGTTTGCCTGTCAGC
1 CC-TTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGC
* * * * * *
975629 TTTGATCTTGGAGATTTCTTCCCCCTTATGTCTGCTTGTCGGCTTTGACCCTCA-AGGCTTCATT
65 TTTGATCTTAGAGACTTCTTCCTCCTTAAGTCTGCCTGTCGGCTTTGACCCT-AGAGACTTCATT
* * *
975693 CTTCTTAAGTTTGCCTGTC-GCCATTAACCCAAGAGAATTTCTATACCCTTTGTTTGCCCGTCAG
129 CTTCTTAAGTCTGCCTGTCAGCC-TTAACCCAAGAGACTTTCTTTACCCTTTGTTT-CCCGTCAG
* * * *** * *
975757 CTTAGACTTGGGAGACCTTTCTATCTTTTGTCTACCCGTCAGCTAAGACTTGGGAGATTTCTTTA
192 CTTAGACTTGGGAGACCTCTCTATCTTTTGTCTACCCGTCGGCTTAGACTCAAGAGACTTCTCTA
* * * * * * * * *
975822 TCTTTTGTTTGCTCGTCAGCTTAGACCTTGAAGGCTTCTTTATCTTTTGTTTGCCTATCAGCTTT
257 TCTTTTGTCTGCCCGTCAGCTTAGACCTGGGAGACTTCTCTATCTTTTGTCTGCCCATCAACTTT
* * *
975887 GAC-ATGGGGTACTCTTTTGCCCTTCGTCTACCCATTGGTTTAAACCCAAGAGACTGCTTCATCT
322 GACTA-GGGG-ACTCTTTTGCCCTTCGTCTACCCATTGGATTAAACCCAGGAGACTACTTCATCT
* * * * *
975951 CAAATCTGCCTGTCAACTTTGAC-CCAGGAGATTTTGTTGCCCTTAAGTCTGCTTGTCAGCTTTA
385 CAAGTCTGCCTGTCGACTTTGACTCTA-GAGATTTT-TCGCCCTTAAGTCTGCTTGTC-GCTTTG
** * * * * *
976015 ACCATGGAGACTTAATCCCCTTTAAGTTTACCTATTGGCCTTGACCTTGGAAACTTCTTCCCCTC
447 ACCAT-GAGACTTCGTCCCCCTTAAGTCTACCTGTTGGCTTTGACCATGGAAACTTCTTCCCC-C
*
976080 TTAAGTTTGCTTGTCGGCTTTGACCCTAGAGATTTCTTCA
510 TTAAGTTTGCTTGTCAGCTTTGACCCTAGAGATTTC-TCA
* * * * * * * *
976120 CCCTAAAGTCTGTCTGTCGGCTTTGACCTTAGAGATTTCTTCACCCTTAAATCTACTTGTCAACT
1 CCTTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGCT
*
976185 TTGA-CACTAGAGACTTCTTCCTCCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTC
66 TTGATC-TTAGAGACTTCTTCCTCCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTC
** * * * *
976249 CCCTTATGTCTGCCTGTCGGCC-TAGACCCAAGAGACTTTCTTTACACTTTGTCTTCCCATC-GA
130 TTCTTAAGTCTGCCTGTCAGCCTTA-ACCCAAGAGACTTTCTTTACCCTTTGT-TTCCCGTCAG-
* * * *
976312 CTTAGACCTGGGAGACCTCTCTATTTTTTATCTACCCGTCGGCTTAGACTCAATGA-ACTTTTCT
192 CTTAGACTTGGGAGACCTCTCTATCTTTTGTCTACCCGTCGGCTTAGACTCAA-GAGACTTCTCT
* * * * * * *
976376 ATCTTTTATCTGCCCGTCGGCTTAGACCTGGGAGACTTCTTTATCTTTTCTCTACCCGTCAGCTT
256 ATCTTTTGTCTGCCCGTCAGCTTAGACCTGGGAGACTTCTCTATCTTTTGTCTGCCCATCAACTT
* * * ** * * *
976441 TGACTTGGGATACTCTTTTACCCTTCGTCTA-CC-TGTCAACTTAAACTCGGGAGACTACTACAT
321 TGACTAGGG-GACTCTTTTGCCCTTCGTCTACCCAT-TGGA-TTAAACCCAGGAGACTACTTCAT
* * * *
976504 CTCAAGTCTGCCTGTCGGCTTTGACTCTAGAGATTTCTTCACCCTAAAGTCTACTTGTCGACTTT
383 CTCAAGTCTGCCTGTCGACTTTGACTCTAGAGATTT-TTCGCCCTTAAGTCTGCTTGTCG-CTTT
* * * * *
976569 GACCCTTATGACTTCGTCCCCCTTAAGTCTACCTGTCGACTTTGACCATGGAGACTTCTTCCCCC
446 GACCATGA-GACTTCGTCCCCCTTAAGTCTACCTGTTGGCTTTGACCATGGAAACTTCTT-CCCC
*
976634 CTTAAGTCTGCTTGTCAGCTTTGACCCTAGAGACTTTCTCA
509 CTTAAGTTTGCTTGTCAGCTTTGACCCTAGAGA-TTTCTCA
*
976675 CCTTAAAGTCTGGCTGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGCT
1 CCTTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGCT
*
976740 TTGAT-TCTAGAGACTTCTTCCTCCTTAAGTCTGCCTGTCGGCTTTGACCCTATAGACTTC-TT-
66 TTGATCT-TAGAGACTTCTTCCTCCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTC
* * * * *
976802 TTCCCTTAAGTCTGCTTGTCAGCTTTGACCCAAGAGACTTTCTTTGCCCTTTGTTTACTCGTCAG
130 TT--CTTAAGTCTGCCTGTCAGCCTTAACCCAAGAGACTTTCTTTACCCTTTGTTT-CCCGTCAG
* * *
976867 CTTAGACTTGGGAGACCTCTCTATCTTTTGTCTGCCCGTCGGCTTAGACTCGAGAGACTTCTTTA
192 CTTAGACTTGGGAGACCTCTCTATCTTTTGTCTACCCGTCGGCTTAGACTCAAGAGACTTCTCTA
* * * * *
976932 TCTTTTGTTTGCTCGTCGGCTTAGACCCGGGGGACTTCTCTATCTTTTGTCTGCCCATCAACTTT
257 TCTTTTGTCTGCCCGTCAGCTTAGACCTGGGAGACTTCTCTATCTTTTGTCTGCCCATCAACTTT
* * * * *
976997 GACCTAGGAGACTCTATTGCCCTTTGTCTACCCATT-GACTTAAACTC-GGAGA-TGGCTTCATC
322 GA-CTAGGGGACTCTTTTGCCCTTCGTCTACCCATTGGA-TTAAACCCAGGAGACT-ACTTCATC
*
977059 TCATGTCT
384 TCAAGTCT
977067 ACGAGTCAGG
Statistics
Matches: 1222, Mismatches: 230, Indels: 98
0.79 0.15 0.06
Matches are distributed among these distances:
552 22 0.02
553 155 0.13
554 156 0.13
555 859 0.70
556 29 0.02
557 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (548 bp):
CCTTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGCT
TTGATCTTAGAGACTTCTTCCTCCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTCT
TCTTAAGTCTGCCTGTCAGCCTTAACCCAAGAGACTTTCTTTACCCTTTGTTTCCCGTCAGCTTA
GACTTGGGAGACCTCTCTATCTTTTGTCTACCCGTCGGCTTAGACTCAAGAGACTTCTCTATCTT
TTGTCTGCCCGTCAGCTTAGACCTGGGAGACTTCTCTATCTTTTGTCTGCCCATCAACTTTGACT
AGGGGACTCTTTTGCCCTTCGTCTACCCATTGGATTAAACCCAGGAGACTACTTCATCTCAAGTC
TGCCTGTCGACTTTGACTCTAGAGATTTTTCGCCCTTAAGTCTGCTTGTCGCTTTGACCATGAGA
CTTCGTCCCCCTTAAGTCTACCTGTTGGCTTTGACCATGGAAACTTCTTCCCCCTTAAGTTTGCT
TGTCAGCTTTGACCCTAGAGATTTCTCA
Found at i:976145 original size:43 final size:42
Alignment explanation
Indices: 976082--976290 Score: 204
Period size: 43 Copynumber: 4.9 Consensus size: 42
976072 TTCCCCTCTT
* *
976082 AAGTTTGCTTGTCGGCTTTGACCCTAGAGATTTCTTCACCCTA
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTC-CCCTA
* *
976125 AAGTCTGTCTGTCGGCTTTGACCTTAGAGATTTCTTCACCCTTA
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTC-CCC-TA
* * ** * * *
976169 AA-TCTACTTGTCAACTTTGACACTAGAGACTTCTTCCTCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTCC-CCTA
* *
976211 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTCCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTC-TTCCCCTA
* * * *
976254 ATGTCTGCCTGTCGGCCTAGACCCAAGAGACTTTCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGA-TTTCTT
976291 TACACTTTGT
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
42 4 0.03
43 123 0.89
44 11 0.08
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (42 bp):
AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTCCCCTA
Found at i:976283 original size:86 final size:86
Alignment explanation
Indices: 976091--976841 Score: 327
Period size: 86 Copynumber: 8.8 Consensus size: 86
976081 TAAGTTTGCT
* * * *
976091 TGTCGGCTTTGACCCTAGAGATTTCTTCACCCTAAAGTCTGTCTGTCGGCTTTGACCTTAGAGAT
1 TGTCGGCTTTGACCCTAGAGACTTCTTCACCCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC
*
976156 TTCTTCACCCTTAAATCTACT
66 TTCTTCACCCTTAAATCTACC
** * *
976177 TGTCAACTTTGACACTAGAGACTTCTTC-CTCCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGA
1 TGTCGGCTTTGACCCTAGAGACTTCTTCAC-CCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGA
** *
976241 CTTCATTC-CCCTTATGTCTGCC
65 CTTC-TTCACCCTTAAATCTACC
* * * * * ** * ** * * *
976263 TGTCGGCCTAGACCCAAGAGACTTTCTTTACACT-TTGTCTTCCCATCGACTTAGA-CCTGGGAG
1 TGTCGGCTTTGACCCTAGAGAC-TTCTTCACCCTAAAGTCTGCCTGTCGGCTTTGACCCT-AGAG
* ** **
976326 ACCTC-TCTA-TTTTTTATCTACC
64 ACTTCTTC-ACCCTTAAATCTACC
* * * * * * ** * * *
976348 CGTCGGCTTAGACTCAATGA-ACTT-TTCTATCTTTTA-TCTGCCCGTCGGCTTAGA-CCTGGGA
1 TGTCGGCTTTGACCCTA-GAGACTTCTTC-ACCCTAAAGTCTGCCTGTCGGCTTTGACCCT-AGA
* * ***
976409 GACTTCTTTA-TCTTTTCTCTACC
63 GACTTCTTCACCCTTAAATCTACC
* * * * * * ** * ** ** * **
976432 CGTCAGCTTTGA-CTTGGGATAC-TCTTTTACCCT-TCGTCTACCTGTCAACTTAAACTCGGGAG
1 TGTCGGCTTTGACCCT-AGAGACTTC-TTCACCCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAG
* * * * * *
976494 ACTACTACA-TCTCAAGTCTGCC
64 ACTTCTTCACCCTTAAATCTACC
* * * * * *
976516 TGTCGGCTTTGACTCTAGAGATTTCTTCACCCTAAAGTCTACTTGTCGACTTTGACCCTTA-TGA
1 TGTCGGCTTTGACCCTAGAGACTTCTTCACCCTAAAGTCTGCCTGTCGGCTTTGACCC-TAGAGA
* * *
976580 CTTCGTCCCCCTTAAGTCTACC
65 CTTCTTCACCCTTAAATCTACC
* * * * * * *
976602 TGTCGACTTTGACCATGGAGACTTCTTCCCCCCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAGA
1 TGTCGGCTTTGACCCTAGAGACTTCTT-CACCCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGA
**
976667 CTT-TCTCA-CCTTAAAGTCTGGC
65 CTTCT-TCACCCTTAAA-TCTACC
* * **
976689 TGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAA-TCTGCCTGTCAGCTTTGATTCTAGAGA
1 TGTCGGCTTTGACCCTAGAGACTTCTTCACCC-TAAAGTCTGCCTGTCGGCTTTGACCCTAGAGA
* *
976753 CTTCTTC-CTCCTTAAGTCTGCC
65 CTTCTTCAC-CCTTAAATCTACC
* ** * * * *
976775 TGTCGGCTTTGACCCTATAGACTTCTTTTCCCTTAAGTCTGCTTGTCAGCTTTGACCCAAGAGAC
1 TGTCGGCTTTGACCCTAGAGACTTCTTCACCCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC
976840 TT
66 TT
976842 TCTTTGCCCT
Statistics
Matches: 501, Mismatches: 133, Indels: 62
0.72 0.19 0.09
Matches are distributed among these distances:
83 6 0.01
84 111 0.22
85 62 0.12
86 240 0.48
87 81 0.16
88 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (86 bp):
TGTCGGCTTTGACCCTAGAGACTTCTTCACCCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC
TTCTTCACCCTTAAATCTACC
Found at i:976302 original size:43 final size:43
Alignment explanation
Indices: 976208--976302 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
976198 CTTCTTCCTC
* * * * * *
976208 CTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTCCC
1 CTTATGTCTGCCTGTCGGCCTAGACCCAAGAGACTTCATTACA
*
976251 CTTATGTCTGCCTGTCGGCCTAGACCCAAGAGACTTTCTTTACA
1 CTTATGTCTGCCTGTCGGCCTAGACCCAAGAGAC-TTCATTACA
976295 CTT-TGTCT
1 CTTATGTCT
976303 TCCCATCGAC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 35 0.80
44 9 0.20
ACGTcount: A:0.17, C:0.31, G:0.18, T:0.35
Consensus pattern (43 bp):
CTTATGTCTGCCTGTCGGCCTAGACCCAAGAGACTTCATTACA
Found at i:976327 original size:129 final size:129
Alignment explanation
Indices: 976057--976327 Score: 269
Period size: 129 Copynumber: 2.1 Consensus size: 129
976047 TATTGGCCTT
* * * *
976057 GACCTTGGAAACTTCTTCCCCTCTTAAGTTTGCTTGTCGGCTTTGACCCTAGAGATTTCTTCACC
1 GACC-TGGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCACC
* * * ** * *** *
976122 CTAAAGTCTGTCTGTCGGCTTTGACCTTAGAGATTTCTTCACCCTTAAATCTACTTGTCAACTTT
65 CTAAAGTCTGCCTGTCGGCCTAGACCCAAGAGATTTCTTCACACTTAAATCTACCCATCAACTTA
* *
976187 GACACTAGAGACTTCTTCCTC-CTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCATTC-C
1 GAC-CTGGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTC-TTCAC
* * * ** * *
976250 CCTTATGTCTGCCTGTCGGCCTAGACCCAAGAGACTTTCTTTACACTT-TGTCTTCCCATCGACT
64 CCTAAAGTCTGCCTGTCGGCCTAGACCCAAGAGA-TTTCTTCACACTTAAATCTACCCATCAACT
976314 TA
128 TA
976316 GACCTGGGAGAC
1 GACCT-GGAGAC
976328 CTCTCTATTT
Statistics
Matches: 113, Mismatches: 24, Indels: 9
0.77 0.16 0.06
Matches are distributed among these distances:
128 2 0.02
129 80 0.71
130 30 0.27
131 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (129 bp):
GACCTGGAGACTTCTTCCCCTCTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCACCC
TAAAGTCTGCCTGTCGGCCTAGACCCAAGAGATTTCTTCACACTTAAATCTACCCATCAACTTA
Found at i:976421 original size:42 final size:42
Alignment explanation
Indices: 976312--976458 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 42
976302 TTCCCATCGA
* * *
976312 CTTAGACCTGGGAGACCTCTCTATTTTTTATCTACCCGTCGG
1 CTTAGACCTGGGAGACTTCTTTATCTTTTATCTACCCGTCGG
*** *
976354 CTTAGACTCAATGA-ACTT-TTCTATCTTTTATCTGCCCGTCGG
1 CTTAGAC-CTGGGAGACTTCTT-TATCTTTTATCTACCCGTCGG
* *
976396 CTTAGACCTGGGAGACTTCTTTATCTTTTCTCTACCCGTCAG
1 CTTAGACCTGGGAGACTTCTTTATCTTTTATCTACCCGTCGG
* * *
976438 CTTTGACTTGGGATAC-TCTTT
1 CTTAGACCTGGGAGACTTCTTT
976459 TACCCTTCGT
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 9 0.11
42 71 0.84
43 5 0.06
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (42 bp):
CTTAGACCTGGGAGACTTCTTTATCTTTTATCTACCCGTCGG
Found at i:976555 original size:43 final size:43
Alignment explanation
Indices: 976507--976841 Score: 345
Period size: 43 Copynumber: 7.8 Consensus size: 43
976497 ACTACATCTC
* * *
976507 AAGTCTGCCTGTCGGCTTTGACTCTAGAGATTTCTTCACCCTA
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTT
* * * * * *
976550 AAGTCTACTTGTCGACTTTGACCCTTA-TGACTTCGTCCCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCC-TAGAGACTTCTTCACCCTT
* * * * *
976593 AAGTCTACCTGTCGACTTTGACCATGGAGACTTCTTCCCCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTT-CACCCTT
* *
976637 AAGTCTGCTTGTCAGCTTTGACCCTAGAGACTT-TCTCA-CCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCT-TCACCCTT
* *
976679 AAAGTCTGGCTGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTT
1 -AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTT
* * **
976723 AAATCTGCCTGTCAGCTTTGATTCTAGAGACTTCTTC-CTCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCAC-CCTT
* **
976766 AAGTCTGCCTGTCGGCTTTGACCCTATAGACTTCTTTTCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTT
* * *
976809 AAGTCTGCTTGTCAGCTTTGACCCAAGAGACTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT
976842 TCTTTGCCCT
Statistics
Matches: 243, Mismatches: 40, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
42 6 0.02
43 194 0.80
44 43 0.18
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (43 bp):
AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTT
Found at i:976664 original size:130 final size:129
Alignment explanation
Indices: 976507--976841 Score: 385
Period size: 130 Copynumber: 2.6 Consensus size: 129
976497 ACTACATCTC
* *
976507 AAGTCTGCCTGTCGGCTTTGACTCTAGAGATTTCTTCACCCTAAAGTCTACTTGTCGACTTTGAC
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTCACCCTAAAGTCTGCTTGTCGACTTTGAC
* * *
976572 CCTTA-TGACTTCGTCCCCCTTAAGTCTACCTGTC-GACTTTGA-CCATGGAGACTTCTTCCCCC
66 CC-TAGAGACTTCGTCCCCCTTAAATCTACCTGTCAG-CTTTGATCC-TAGAGACTTCTT-CCCC
976634 CTT
127 CTT
* * * *
976637 AAGTCTGCTTGTCAGCTTTGACCCTAGAGACTTTC-TCACCTTAAAGTCTGGC-TGTCGGCTTTG
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGA-TTTCTTCACCCTAAAGTCT-GCTTGTCGACTTTG
* * * * *
976700 ACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGCTTTGATTCTAGAGACTTCTTCCTCCT
64 ACCCTAGAGACTTCGTCCCCCTTAAATCTACCTGTCAGCTTTGATCCTAGAGACTTCTTCCCCCT
976765 T
129 T
* * ** *
976766 AAGTCTGCCTGTCGGCTTTGACCCTATAGACTTCTTTTCCCTTAAGTCTGCTTGTC-AGCTTTGA
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTCACCCTAAAGTCTGCTTGTCGA-CTTTGA
*
976830 CCCAAGAGACTT
65 CCCTAGAGACTT
976842 TCTTTGCCCT
Statistics
Matches: 173, Mismatches: 24, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
128 5 0.03
129 66 0.38
130 95 0.55
131 7 0.04
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (129 bp):
AAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTCTTCACCCTAAAGTCTGCTTGTCGACTTTGAC
CCTAGAGACTTCGTCCCCCTTAAATCTACCTGTCAGCTTTGATCCTAGAGACTTCTTCCCCCTT
Found at i:976912 original size:42 final size:42
Alignment explanation
Indices: 976861--976987 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 42
976851 TTTGTTTACT
* * *
976861 CGTCAGCTTAGACTTGGGAGACCTCTCTATCTTTTGTCTGCC
1 CGTCGGCTTAGACTCGGGAGACTTCTCTATCTTTTGTCTGCC
* * * *
976903 CGTCGGCTTAGACTCGAGAGACTTCTTTATCTTTTGTTTGCT
1 CGTCGGCTTAGACTCGGGAGACTTCTCTATCTTTTGTCTGCC
* *
976945 CGTCGGCTTAGACCCGGGGGACTTCTCTATCTTTTGTCTGCC
1 CGTCGGCTTAGACTCGGGAGACTTCTCTATCTTTTGTCTGCC
976987 C
1 C
976988 ATCAACTTTG
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.13, C:0.28, G:0.23, T:0.37
Consensus pattern (42 bp):
CGTCGGCTTAGACTCGGGAGACTTCTCTATCTTTTGTCTGCC
Found at i:977008 original size:84 final size:84
Alignment explanation
Indices: 976824--977023 Score: 206
Period size: 84 Copynumber: 2.4 Consensus size: 84
976814 TGCTTGTCAG
* * * **
976824 CTTTGACCCAAGAGACTTTCTTTGCCCTTTGTTTACTCGTCAGCTTAGACTTGGGAGACCTCTCT
1 CTTTGACCTAGGAGAC-TTCTTTACCCTTTGTTTACTCGTCAGCTTAGACCCGGGAGACCTCTCT
* **
976889 ATCTTTTGTCTGCCCGTCGG
65 ATCTTTTGTCTGCCCATCAA
* * * * * * * *
976909 CTTAGA-CTCGAGAGACTTCTTTATCTTTTGTTTGCTCGTCGGCTTAGACCCGGGGGACTTCTCT
1 CTTTGACCTAG-GAGACTTCTTTACCCTTTGTTTACTCGTCAGCTTAGACCCGGGAGACCTCTCT
976973 ATCTTTTGTCTGCCCATCAA
65 ATCTTTTGTCTGCCCATCAA
*
976993 CTTTGACCTAGGAGAC-TCTATTGCCCTTTGT
1 CTTTGACCTAGGAGACTTCT-TTACCCTTTGT
977024 CTACCCATTG
Statistics
Matches: 91, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
83 3 0.03
84 75 0.82
85 13 0.14
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (84 bp):
CTTTGACCTAGGAGACTTCTTTACCCTTTGTTTACTCGTCAGCTTAGACCCGGGAGACCTCTCTA
TCTTTTGTCTGCCCATCAA
Found at i:977237 original size:43 final size:42
Alignment explanation
Indices: 977088--977265 Score: 178
Period size: 43 Copynumber: 4.1 Consensus size: 42
977078 TTCACACTAA
* * * *
977088 AGACTTCTTACCCCTTAAGTTTGCTTATCGGCTTTAACCTTAG
1 AGACTTCTT-CCCCTTAAGTCTGCTTGTCGGCTTTGACCCTAG
* ** *
977131 AGACTTCTTCCCCTTTTAAGTTTGCTTGTC-ATTTTGACCCTAC
1 AGACTTCTTCCCC--TTAAGTCTGCTTGTCGGCTTTGACCCTAG
* *
977174 AGACTTCCTCACCCTTAAGTCTGCTTGTCGGCTTTGACCCTGG
1 AGACTTCTTC-CCCTTAAGTCTGCTTGTCGGCTTTGACCCTAG
* * * *
977217 TGACTTCGTTCCCCTTAAGTCTGCCTGTGGGCTTTGACCCAAG
1 AGACTTC-TTCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTAG
977260 AGACTT
1 AGACTT
977266 TCTTTATCCT
Statistics
Matches: 111, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
42 18 0.16
43 74 0.67
44 19 0.17
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (42 bp):
AGACTTCTTCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTAG
Found at i:977380 original size:42 final size:41
Alignment explanation
Indices: 977298--977405 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 41
977288 TGGCTTATAC
*
977298 CCGAGAGACCTT-TCTATCTTTTGTCTGCCCGTCGACTTAGA
1 CCGAGAGA-CTTCTCTATCTTTTGTCTACCCGTCGACTTAGA
* *
977339 CTCGAGAGACTTCTCTATCTTTTTTCTACCCGTC-AGTTTAGA
1 C-CGAGAGACTTCTCTATCTTTTGTCTACCCGTCGA-CTTAGA
* * *
977381 CCTGGGAGATTTCTCTATCCTTTGT
1 CC-GAGAGACTTCTCTATCTTTTGT
977406 TTGCTTGTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 6 0.11
42 50 0.89
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.39
Consensus pattern (41 bp):
CCGAGAGACTTCTCTATCTTTTGTCTACCCGTCGACTTAGA
Found at i:977533 original size:43 final size:43
Alignment explanation
Indices: 977485--977589 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
977475 GCTTTATCTA
* * * *
977485 AAGTCTGCTCGTCGGCTTTGACCTTAGAGACTTCTTCGTCTTT
1 AAGTCTGCTCGTCAGCTTTGACCATAGAGACTTCTTCGCCCTT
*
977528 AAGTCTGCTTGTCAGCTTTGACCATAGAGACTTCTTCGCCCTT
1 AAGTCTGCTCGTCAGCTTTGACCATAGAGACTTCTTCGCCCTT
* *
977571 AAGTCTTCTTGTCAGCTTT
1 AAGTCTGCTCGTCAGCTTT
977590 AACCCTGGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39
Consensus pattern (43 bp):
AAGTCTGCTCGTCAGCTTTGACCATAGAGACTTCTTCGCCCTT
Found at i:977604 original size:43 final size:43
Alignment explanation
Indices: 977485--977620 Score: 137
Period size: 43 Copynumber: 3.2 Consensus size: 43
977475 GCTTTATCTA
* * * * * * *
977485 AAGTCTGCTCGTCGGCTTTGACCTTAGAGACTTCTTCGTCTTT
1 AAGTCTGCTTGTCAGCTTTAACCATAGAAACTTCTTCGCCCTT
* *
977528 AAGTCTGCTTGTCAGCTTTGACCATAGAGACTTCTTCGCCCTT
1 AAGTCTGCTTGTCAGCTTTAACCATAGAAACTTCTTCGCCCTT
* * * * * *
977571 AAGTCTTCTTGTCAGCTTTAACCCTGGAAACTTCGTCTCCCTC
1 AAGTCTGCTTGTCAGCTTTAACCATAGAAACTTCTTCGCCCTT
977614 AAGTCTG
1 AAGTCTG
977621 TTTAGCGGCT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (43 bp):
AAGTCTGCTTGTCAGCTTTAACCATAGAAACTTCTTCGCCCTT
Found at i:977620 original size:424 final size:420
Alignment explanation
Indices: 976637--977636 Score: 1022
Period size: 424 Copynumber: 2.4 Consensus size: 420
976627 TTCCCCCCTT
* * *
976637 AAGTCTGCTTGTCAGCTTTGACCCTAGAGACTT-TCTCACCTTAAAGTCTGGC-TGTCGGCTTTG
1 AAGTCTGCTAGTCGGCTTTGA-CCTAGAGACTTCT-TC-CCTTTAAGTCT-GCTTGTCGGCTTTG
* * * * ** *
976700 ACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCAGCTTTGATTCTAGAGACTTCTTCCTCCT
62 ACCATAGAGACTTCTTCGCCCTTAAGTCTTCTTGTCAGCTTTGACCCTAGAGACTTCCTCC-CCT
* * * *
976765 TAAGTCTGCCTGTCGGCTTTGACCCTATAGACTTCTTTTCCCTTAAGTCTGCTTGTCAGCTTTGA
126 TAAGTCTGCTTGTCGGCTTTGACCCTATAGACTTCGTTCCCCTTAAGTCTGCCTGTCAGCTTTGA
* * ** *
976830 CCCAAGAGACTTTCTTTGCCCTTTGTTTACTCGTCAGCTTAGACTTGGGAGACCTCTCTATCTTT
191 CCCAAGAGACTTTCTTTACCCTTTGTCTACTCGTCAGCTTAGACCCGAGAGACCTCTCTATCTTT
* * * * *
976895 TGTCTGCCCGTCGGCTTAGACTCGAGAGACTTCTTTATCTTTTGTTTGCTCGTCGGCTTAGACCC
256 TGTCTGCCCGTCGACTTAGACTCGAGAGACTTCTCTATCTTTTGTTTACCCGTCAGCTTAGACCC
* * * *
976960 GGGGGACTTCTCTATCTTTTGTCTGCCCATCAACTTTGACCTAGGAGACTCTATTGCCCTTTGTC
321 GGGAGACTTCTCTATCCTTTGTCTGCCCATCAAATTTGACCTAGGAGACTCTATTGCCCTTCGTC
* * *
977025 TACCCATTGACTTAAACTCGGAGATGGCTTCATCTC
386 TACCCATGGAC-TAAACTCGGAGATCGCTTCATCTA
* * * * * * * * *
977061 ATGTCTACGAGTCAGG-TTTCACACTAAAGACTTCTTACCCCTTAAGTTTGCTTATCGGCTTTAA
1 AAGTCTGCTAGTC-GGCTTTGAC-CTAGAGACTTCTT-CCCTTTAAGTCTGCTTGTCGGCTTTGA
* * *
977125 CCTTAGAGACTTCTTC-CCCTTTTAAGT-TTGCTTGTCA-TTTTGACCCTACAGACTTCCTCACC
63 CCATAGAGACTTCTTCGCCC--TTAAGTCTT-CTTGTCAGCTTTGACCCTAGAGACTTCCTC-CC
* **
977187 CTTAAGTCTGCTTGTCGGCTTTGACCCTGGT-GACTTCGTTCCCCTTAAGTCTGCCTGTGGGCTT
124 CTTAAGTCTGCTTGTCGGCTTTGACCCT-ATAGACTTCGTTCCCCTTAAGTCTGCCTGTCAGCTT
* * * * *
977251 TGACCCAAGAGACTTTCTTTATCCTTTGTCT-GTCAG-CTGGCTTATACCCGAGAGACCTTTCTA
188 TGACCCAAGAGACTTTCTTTACCCTTTGTCTACTC-GTC-AGCTTAGACCCGAGAGACCTCTCTA
*
977314 TCTTTTGTCTGCCCGTCGACTTAGACTCGAGAGACTTCTCTATCTTTT-TTCTACCCGTCAGTTT
251 TCTTTTGTCTGCCCGTCGACTTAGACTCGAGAGACTTCTCTATCTTTTGTT-TACCCGTCAGCTT
* * * *** * * *
977378 AGACCTGGGAGATTTCTCTATCCTTTGTTTGCTTGTCAAATTTGACTTGGGAGGCTCCT-TTGCC
315 AGACCCGGGAGACTTCTCTATCCTTTGTCTGCCCATCAAATTTGACCTAGGAGACT-CTATTGCC
*
977442 CTTCGAT-TACCCATCGGA-TAAAC-CTGAGAGATCGCTTTATCTA
379 CTTCG-TCTACCCAT-GGACTAAACTC-G-GAGATCGCTTCATCTA
* * *
977485 AAGTCTGCTCGTCGGCTTTGACCTTAGAGACTTCTTCGTCTTTAAGTCTGCTTGTCAGCTTTGAC
1 AAGTCTGCTAGTCGGCTTTGACC-TAGAGACTTCTTC-CCTTTAAGTCTGCTTGTCGGCTTTGAC
* * * * *
977550 CATAGAGACTTCTTCGCCCTTAAGTCTTCTTGTCAGCTTTAACCCTGGAAACTTCGTCTCCCTCA
64 CATAGAGACTTCTTCGCCCTTAAGTCTTCTTGTCAGCTTTGACCCTAGAGACTTCCTC-CCCTTA
*
977615 AGTCTGTTTAG-CGGCTTTGACC
128 AGTCTGCTT-GTCGGCTTTGACC
977637 TGTGAAACTT
Statistics
Matches: 468, Mismatches: 83, Indels: 50
0.78 0.14 0.08
Matches are distributed among these distances:
422 1 0.00
423 34 0.07
424 408 0.87
425 25 0.05
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.37
Consensus pattern (420 bp):
AAGTCTGCTAGTCGGCTTTGACCTAGAGACTTCTTCCCTTTAAGTCTGCTTGTCGGCTTTGACCA
TAGAGACTTCTTCGCCCTTAAGTCTTCTTGTCAGCTTTGACCCTAGAGACTTCCTCCCCTTAAGT
CTGCTTGTCGGCTTTGACCCTATAGACTTCGTTCCCCTTAAGTCTGCCTGTCAGCTTTGACCCAA
GAGACTTTCTTTACCCTTTGTCTACTCGTCAGCTTAGACCCGAGAGACCTCTCTATCTTTTGTCT
GCCCGTCGACTTAGACTCGAGAGACTTCTCTATCTTTTGTTTACCCGTCAGCTTAGACCCGGGAG
ACTTCTCTATCCTTTGTCTGCCCATCAAATTTGACCTAGGAGACTCTATTGCCCTTCGTCTACCC
ATGGACTAAACTCGGAGATCGCTTCATCTA
Found at i:977813 original size:43 final size:43
Alignment explanation
Indices: 977760--977913 Score: 139
Period size: 43 Copynumber: 3.6 Consensus size: 43
977750 CATTAACTTA
* * *
977760 GACCCAGGAGACTTCTTTGCCCTTAAGTCTGCCTGTCGGCTTT
1 GACCCTGGAGACTTCTTTCCCCTTAAGTCTGCCTGTCAGCTTT
* * *
977803 GACCCTGGAGATTTCTTTCCCCTTATGTCTGCTTGTCAGCTTT
1 GACCCTGGAGACTTCTTTCCCCTTAAGTCTGCCTGTCAGCTTT
* * * * * *
977846 GACCCTCGAGACTT-TGTTCTCTTTAAGTTTGCATGTCACCTTT
1 GACCCTGGAGACTTCT-TTCCCCTTAAGTCTGCCTGTCAGCTTT
* ** *
977889 AACCCAAGAGACTTTCTTTACCCTT
1 GACCCTGGAGAC-TTCTTTCCCCTT
977914 TGTTTGCCCG
Statistics
Matches: 88, Mismatches: 20, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
42 1 0.01
43 79 0.90
44 7 0.08
45 1 0.01
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.38
Consensus pattern (43 bp):
GACCCTGGAGACTTCTTTCCCCTTAAGTCTGCCTGTCAGCTTT
Found at i:978018 original size:42 final size:42
Alignment explanation
Indices: 977896--978054 Score: 156
Period size: 42 Copynumber: 3.8 Consensus size: 42
977886 TTTAACCCAA
* * * * *
977896 GAGACTTTCTTTACCCTTTGTTTGCCCGTCAGCATAGACTTGG
1 GAGAC-TTCTTTATCTTTTGTCTGCCCATCAGCATAGACCTGG
* * * * * *
977939 GAGACCTCTCTATTTTTTGTCTACCCATCGGCTTAGACCTGG
1 GAGACTTCTTTATCTTTTGTCTGCCCATCAGCATAGACCTGG
* * *
977981 GAGACTTCTTTATCTTTTGTCTGCTCATCAGCCTAGACCTTG
1 GAGACTTCTTTATCTTTTGTCTGCCCATCAGCATAGACCTGG
* * *
978023 GAGGCTTCTTTATCTTTTGTTTGCCTATCAGC
1 GAGACTTCTTTATCTTTTGTCTGCCCATCAGC
978055 TTTGACACGG
Statistics
Matches: 93, Mismatches: 23, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
42 88 0.95
43 5 0.05
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.40
Consensus pattern (42 bp):
GAGACTTCTTTATCTTTTGTCTGCCCATCAGCATAGACCTGG
Found at i:978237 original size:43 final size:43
Alignment explanation
Indices: 978132--978457 Score: 212
Period size: 43 Copynumber: 7.6 Consensus size: 43
978122 CAAATCTGCT
* * * * *
978132 TGTCAGCTTTAACCC-AGTAGACTTCTTCACCCTTAAGTCTGCT
1 TGTCGGCTTTGACCCTAG-AGACTTCTTCCCCCTTAAGTCTACC
* * *** * * *
978175 TGTCGCCTTTAATAATGGAGACTTCATCCCCCTCAAGTCTACC
1 TGTCGGCTTTGACCCTAGAGACTTCTTCCCCCTTAAGTCTACC
* * * * *
978218 TGTCGGCTTTGACCTTGGAGACTTCTTTCCCCTTTAAGTGTACT
1 TGTCGGCTTTGACCCTAGAGACTTC-TTCCCCCTTAAGTCTACC
** * * **
978262 TGTTAGCTTTGACCCTAGAGACTTAC-T-CACCTTAAAGTTTGTC
1 TGTCGGCTTTGACCCTAGAGACTT-CTTCCCCCTT-AAGTCTACC
* * * *
978305 TATCGGCTTTGACCCTAAAGACTTCTTCGCCCTTAAATCTACC
1 TGTCGGCTTTGACCCTAGAGACTTCTTCCCCCTTAAGTCTACC
* * * * * *
978348 TATTGGCTTTGACCCTAAAGCCTTCTTCCTCCTTAAGTCTGCC
1 TGTCGGCTTTGACCCTAGAGACTTCTTCCCCCTTAAGTCTACC
* * *
978391 TGTCGACTTTGACCCT-GCAGACTTCGTT-CCCTTTAAGTCTGCC
1 TGTCGGCTTTGACCCTAG-AGACTTC-TTCCCCCTTAAGTCTACC
* *
978434 TGTCAGCTTTGACCCAAGAGACTT
1 TGTCGGCTTTGACCCTAGAGACTT
978458 TCTTTGCCTT
Statistics
Matches: 217, Mismatches: 57, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
42 5 0.02
43 170 0.78
44 41 0.19
45 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (43 bp):
TGTCGGCTTTGACCCTAGAGACTTCTTCCCCCTTAAGTCTACC
Found at i:978443 original size:86 final size:85
Alignment explanation
Indices: 978209--978457 Score: 234
Period size: 86 Copynumber: 2.9 Consensus size: 85
978199 CATCCCCCTC
* * * * *
978209 AAGTCTACCTGTCGGCTTTGACCTTGGAGACTTCTTTCCCCTTTAAGTGTACTTGTTAGCTTTGA
1 AAGTCTGCCTGTCGGCTTTGACCCTGAAGACTTC-TT-CCCTTTAAGTCTACCTGTTAGCTTTGA
*
978274 CCCTAGAGACTTACTCACCTTA
64 CCCTAAAGACTTACTCACCTTA
* * * * * * * *
978296 AAGTTTGTCTATCGGCTTTGACCCTAAAGACTTCTTCGCCCTTAAATCTACCTATTGGCTTTGAC
1 AAGTCTGCCTGTCGGCTTTGACCCTGAAGACTTCTTC-CCTTTAAGTCTACCTGTTAGCTTTGAC
* *
978361 CCTAAAGCCTT-CTTCCTCCTT-
65 CCTAAAGACTTAC-T-CACCTTA
* * * *
978382 AAGTCTGCCTGTCGACTTTGACCCTGCAGACTTCGTTCCCTTTAAGTCTGCCTGTCAGCTTTGAC
1 AAGTCTGCCTGTCGGCTTTGACCCTGAAGACTTC-TTCCCTTTAAGTCTACCTGTTAGCTTTGAC
978447 CC-AAGAGACTT
65 CCTAA-AGACTT
978458 TCTTTGCCTT
Statistics
Matches: 128, Mismatches: 29, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
85 4 0.03
86 89 0.70
87 35 0.27
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (85 bp):
AAGTCTGCCTGTCGGCTTTGACCCTGAAGACTTCTTCCCTTTAAGTCTACCTGTTAGCTTTGACC
CTAAAGACTTACTCACCTTA
Found at i:978511 original size:42 final size:42
Alignment explanation
Indices: 978465--978573 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
978455 CTTTCTTTGC
* *
978465 CTTTTGTTTACCCGTCAACTTAGACTCGGGAGACCACTT-TAT
1 CTTTTGTTTACCCGTCAGCTTAGACTCGAGAGA-CACTTCTAT
* * * **
978507 CTTTTGTTTGCCCGTTAGCTTAGGCTCGAGAGACTTTTCTAT
1 CTTTTGTTTACCCGTCAGCTTAGACTCGAGAGACACTTCTAT
* *
978549 CTTTTATTTACCCATCAGCTTAGAC
1 CTTTTGTTTACCCGTCAGCTTAGAC
978574 CCGAAAAACT
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 3 0.06
42 51 0.94
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (42 bp):
CTTTTGTTTACCCGTCAGCTTAGACTCGAGAGACACTTCTAT
Found at i:978741 original size:43 final size:41
Alignment explanation
Indices: 978675--978872 Score: 114
Period size: 43 Copynumber: 4.6 Consensus size: 41
978665 ATGGCTTTAT
* * *
978675 CTTATGTCTGCCTGTCCAGTTTGACACTGAAGACTTCTTACCC
1 CTTAAGTCTGCCTGTCGACTTTGAC-CTGAAGACTTCTT-CCC
* *
978718 CTTAAGTCTGCTTGTCGACTTTGACCTCGGAGACTTCTTCCCCC
1 CTTAAGTCTGCCTGTCGACTTTGACCT-GAAGACTTCTT--CCC
* * * * *
978762 CTAAAGTTTGCCTGTCG-TTTTGATCCT-ACAGACTTCCTCAAC
1 CTTAAGTCTGCCTGTCGACTTTGA-CCTGA-AGACTTCTTC-CC
* ** * *
978804 CTTAAGTCTGCTTGTC-AGCTTTGACCCTGGTGACTTCATTTCA
1 CTTAAGTCTGCCTGTCGA-CTTTGA-CCTGAAGACTTC-TTCCC
* * *
978847 CTTAAGTCTCCCTATCGGCTTTGACC
1 CTTAAGTCTGCCTGTCGACTTTGACC
978873 CAAGAGACTT
Statistics
Matches: 117, Mismatches: 28, Indels: 21
0.70 0.17 0.13
Matches are distributed among these distances:
41 1 0.01
42 18 0.15
43 77 0.66
44 21 0.18
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.36
Consensus pattern (41 bp):
CTTAAGTCTGCCTGTCGACTTTGACCTGAAGACTTCTTCCC
Found at i:978942 original size:42 final size:42
Alignment explanation
Indices: 978892--979032 Score: 133
Period size: 42 Copynumber: 3.4 Consensus size: 42
978882 TTTTTTACCC
*
978892 TTTGTCTGCCTGTTAGCTTAGACCCAAGAAACCTT-TCTATCT
1 TTTGTCTGCCTGTCAGCTTAGACCCAAGAAA-CTTCTCTATCT
* * * *
978934 TTTGTCTG-CTCGTCGGCTTAGACTCGAGAGACTTCTCTATCT
1 TTTGTCTGCCT-GTCAGCTTAGACCCAAGAAACTTCTCTATCT
* **** * *
978976 TTTGTCTGCCCGTCAGCTTAGACTTGGGAGACTTCTCTATCC
1 TTTGTCTGCCTGTCAGCTTAGACCCAAGAAACTTCTCTATCT
*
979018 TTTGTCTGCCCGTCA
1 TTTGTCTGCCTGTCA
979033 AGTTTGACCC
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
41 5 0.06
42 80 0.93
43 1 0.01
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.38
Consensus pattern (42 bp):
TTTGTCTGCCTGTCAGCTTAGACCCAAGAAACTTCTCTATCT
Found at i:979169 original size:43 final size:43
Alignment explanation
Indices: 979109--979339 Score: 186
Period size: 43 Copynumber: 5.4 Consensus size: 43
979099 CTAAAGTATG
* * *
979109 CTTGTCGGCTTTAACCCTGGAGACTTCTTCGCCCTTAAGTCTA
1 CTTGTCAGCTTTGACCCTGGAGACTTCTTCACCCTTAAGTCTA
* *
979152 CTTATCAGCTTTGACCCTGGAGACTTCTTCACCCTTAAGTCTT
1 CTTGTCAGCTTTGACCCTGGAGACTTCTTCACCCTTAAGTCTA
* * * * *
979195 CTTTTCGGCTTTGACCTTGGAAACTT-TATC-CCCTCAAGTC-A
1 CTTGTCAGCTTTGACCCTGGAGACTTCT-TCACCCTTAAGTCTA
* * * *
979236 GCCTGTCAGCCTTGA-CCTAGGAGACTTCTTCACCCTTAAGTATG
1 -CTTGTCAGCTTTGACCCT-GGAGACTTCTTCACCCTTAAGTCTA
* * * * * *
979280 CTTGTCAGCATT-ATCCCTAGAGACTTTTTCCCCCGTAAGTCTG
1 CTTGTCAGCTTTGA-CCCTGGAGACTTCTTCACCCTTAAGTCTA
*
979323 CCTGTCAAG-TTTGACCC
1 CTTGTC-AGCTTTGACCC
979340 ATGAAACTTT
Statistics
Matches: 149, Mismatches: 29, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.01
42 30 0.20
43 111 0.74
44 6 0.04
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (43 bp):
CTTGTCAGCTTTGACCCTGGAGACTTCTTCACCCTTAAGTCTA
Found at i:979306 original size:85 final size:83
Alignment explanation
Indices: 979102--979329 Score: 219
Period size: 85 Copynumber: 2.7 Consensus size: 83
979092 ACTTCATCTA
* * * *
979102 AAGTATGCTTGTCGGCTTTAACCCTGGAGACTTCTTCGCCCTTAAGTCTA-CTTATCAGCTTTGA
1 AAGTATGCTTGTCGGCTTT-ACCCTGGAGACTT-TTC-CCCTCAAGTC-AGCCTGTCAGCCTTGA
979166 CCCTGGAGACTTCTTCACCCTT
62 CCCTGGAGACTTCTTCACCCTT
* * * * *
979188 AAGTCTTCTTTTCGGCTTTGACCTTGGAAACTTTATCCCCTCAAGTCAGCCTGTCAGCCTTGA-C
1 AAGTATGCTTGTCGGCTTT-ACCCTGGAGACTTT-TCCCCTCAAGTCAGCCTGTCAGCCTTGACC
979252 CTAGGAGACTTCTTCACCCTT
64 CT-GGAGACTTCTTCACCCTT
* * * *
979273 AAGTATGCTTGTCAGCATTATCCCTAGAGACTTTTTCCCC-CGTAAGTCTGCCTGTCA
1 AAGTATGCTTGTCGGCTTTA-CCCTGGAGAC-TTTTCCCCTC--AAGTCAGCCTGTCA
979330 AGTTTGACCC
Statistics
Matches: 116, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
84 6 0.05
85 65 0.56
86 45 0.39
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.34
Consensus pattern (83 bp):
AAGTATGCTTGTCGGCTTTACCCTGGAGACTTTTCCCCTCAAGTCAGCCTGTCAGCCTTGACCCT
GGAGACTTCTTCACCCTT
Found at i:979632 original size:43 final size:42
Alignment explanation
Indices: 979584--980332 Score: 237
Period size: 43 Copynumber: 17.5 Consensus size: 42
979574 TGCCTGTCGA
*
979584 CTTTGACCTTGGAGACTTCCCCACCCTTAAGTCTACCTATCGG
1 CTTTGACCTTGGAGACTTCTCC-CCCTTAAGTCTACCTATCGG
* * *
979627 CTTTGA-CTCTAGAGACTTCATCCCCTTTAAGTCTACCTACCGG
1 CTTTGACCT-TGGAGACTTC-TCCCCCTTAAGTCTACCTATCGG
* * * * *
979670 CTTTGACATTGGAGACTTCTTCGCCCTTAAGCCTGCCTGTCGG
1 CTTTGACCTTGGAGACTTC-TCCCCCTTAAGTCTACCTATCGG
* * * * * *
979713 CTTTGATCGTGGAGACTTTGTCCCCCTTAAGTCTGCCCATCGA
1 CTTTGACCTTGGAGAC-TTCTCCCCCTTAAGTCTACCTATCGG
* *** *** * **
979756 CTTTGACC-CGAGAGACTTCTCTATCTTTTCTCTGTCC-ATCAA
1 CTTTGACCTTG-GAGACTTCTCCCCCTTAAGTCT-ACCTATCGG
* * *** * * *
979798 CTTTGA-CTCGAGAGACTACTTTGTCCTT-CGTCTACCTGTCAG
1 CTTTGACCTTG-GAGACTTC-TCCCCCTTAAGTCTACCTATCGG
** * * * *** * *
979840 CTTAAACC-CGTGAGACTGCTTCATTTTAAGTCTGCCTGTCGG
1 CTTTGACCTTG-GAGACTTCTCCCCCTTAAGTCTACCTATCGG
* * * * * * *
979882 TTTTGACCCTAGAGACTTCTTTGCCCTTTAA-TCTACCTGTCGA
1 CTTTGACCTTGGAGACTTC--TCCCCCTTAAGTCTACCTATCGG
* ** * * ** *
979925 CTTTGACCTTGGAGATTTCTTTGCCCTTTAGTCTGCCCGTTGG
1 CTTTGACCTTGGAGACTTC-TCCCCCTTAAGTCTACCTATCGG
* * * * * **
979968 CTTTGACCCTAGAAACTTCTTCGCCCTTAAGTCTGCCTATCCT
1 CTTTGACCTTGGAGACTTC-TCCCCCTTAAGTCTACCTATCGG
* * * * *
980011 CTTTGACCCTAGG-TACTTTTTCACCCTTAAGT-T-CGCATGTCGG
1 CTTTGA-CCTTGGAGAC-TTCTCCCCCTTAAGTCTAC-C-TATCGG
* * *
980054 CTTTCACCTTGGAGACTTCTTCGCCCCTT-AGACTAAC-AGTCGG
1 CTTTGACCTTGGAGACTTC-TC-CCCCTTAAGTCTACCTA-TCGG
* * * * *
980097 CTTTGACCCTAGAGACTTCTTCGCCCTTAAGTCCACCTATCAG
1 CTTTGACCTTGGAGACTTC-TCCCCCTTAAGTCTACCTATCGG
* * ** * * * *
980140 CTTTCACCTTGGGGACTTCTTTGCCCTTTAGTCTGCTTGTCGG
1 CTTTGACCTTGGAGACTTC-TCCCCCTTAAGTCTACCTATCGG
* * * * *
980183 CTTTGACCTTAGAGACTTTTTCCCCTTTTAAGTCTATCGT-TCAG
1 CTTTGACCTTGGAGAC-TTCTCCCC-CTTAAGTCTA-CCTATCGG
* * * * *
980227 CTTTGTCCCTAGAGACTTCTTTCCCCCTTAAGTCTACCTGTTGG
1 CTTTGACCTTGGAGACTTC--TCCCCCTTAAGTCTACCTATCGG
* * ** *
980271 CTTTGACCTTAGAAACTTCCTAACCCTTAAGTCTACCTATCAG
1 CTTTGACCTTGGAGACTT-CTCCCCCTTAAGTCTACCTATCGG
980314 CTTTGACCTTGGAGACTTC
1 CTTTGACCTTGGAGACTTC
980333 ATTCGCCTTA
Statistics
Matches: 520, Mismatches: 152, Indels: 69
0.70 0.21 0.09
Matches are distributed among these distances:
41 8 0.02
42 97 0.19
43 330 0.63
44 77 0.15
45 8 0.02
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.36
Consensus pattern (42 bp):
CTTTGACCTTGGAGACTTCTCCCCCTTAAGTCTACCTATCGG
Found at i:980136 original size:129 final size:128
Alignment explanation
Indices: 979887--980339 Score: 392
Period size: 129 Copynumber: 3.5 Consensus size: 128
979877 GTCGGTTTTG
* * * * * * *
979887 ACCCTAGAGACTTCTTTGCCCTTTAA-TCTACCTGTCGACTTTGACCTTGGAGATTTCTTTGCCC
1 ACCCTAGGGACTTCTTTACCC-TTAAGTCTGCATGTCGGCTTTGACCTTGGAGACTTCTTCGCCC
** * * * ** *
979951 TTTAGTCTGCCCGTTGGCTTTGACCCTAGAAACTTCTTCGCCCTTAAGTCTGCCTATCCTCTTTG
65 TTTAGTCT-AACGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAGTCTACCTATCAGCTTTC
* *
980016 ACCCTAGGTACTT-TTTCACCCTTAAGT-TCGCATGTCGGCTTTCACCTTGGAGACTTCTTCGCC
1 ACCCTAGGGACTTCTTT-ACCCTTAAGTCT-GCATGTCGGCTTTGACCTTGGAGACTTCTTCGCC
* * *
980079 CCTTAGACTAACAGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAGTCCACCTATCAGCTTT
64 CTTTAGTCTAAC-GTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAGTCTACCTATCAGCTTT
980144 C
128 C
* * * * * * *
980145 ACCTTGGGGACTTCTTTGCCCTTTAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTTTTC-CCCT
1 ACCCTAGGGACTTCTTTACCCTTAAGTCTGCATGTCGGCTTTGACCTTGGAGACTTCTTCGCCC-
* * * * * **
980209 TTTAAGTCTATCGTTCAGCTTTGTCCCTAGAGACTTCTTTCCCCCTTAAGTCTACCTGTTGGCTT
65 TTT-AGTCTAACG-TCGGCTTTGACCCTAGAGACTTC-TTCGCCCTTAAGTCTACCTATCAGCTT
*
980274 TG
127 TC
* ** * * * * * *
980276 ACCTTAGAAACTTCCTAACCCTTAAGTCTACCTATCAGCTTTGACCTTGGAGACTTCATTCGCC
1 ACCCTAGGGACTTCTTTACCCTTAAGTCTGCATGTCGGCTTTGACCTTGGAGACTTC-TTCGCC
980340 TTAAGTTTGC
Statistics
Matches: 259, Mismatches: 53, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
128 12 0.05
129 144 0.56
130 31 0.12
131 67 0.26
132 3 0.01
133 2 0.01
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.36
Consensus pattern (128 bp):
ACCCTAGGGACTTCTTTACCCTTAAGTCTGCATGTCGGCTTTGACCTTGGAGACTTCTTCGCCCT
TTAGTCTAACGTCGGCTTTGACCCTAGAGACTTCTTCGCCCTTAAGTCTACCTATCAGCTTTC
Found at i:980298 original size:131 final size:130
Alignment explanation
Indices: 980096--980331 Score: 292
Period size: 131 Copynumber: 1.8 Consensus size: 130
980086 CTAACAGTCG
* * ** *
980096 GCTTTGACCCTAGAGACTTCTTCGCCCTTAAGTCCACCTATCAGCTTTCACCTTGGGGACTTCTT
1 GCTTTGACCCTAGAGACTTCTTCCCCCTTAAGTCCACCTATCAGCTTTCACCTTAGAAACTTCCT
** * * * * *
980161 TGCCCTTTAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTTTTCCCCTTTTAAGTCTATCGTTCA
66 AACCCTTAAGTCTACCTATCAGCTTTGACCTTAGAGACTTTTTCCCCTTTTAAGTCTATCGTTCA
* * * ** *
980226 GCTTTGTCCCTAGAGACTTCTTTCCCCCTTAAGTCTACCTGTTGGCTTTGACCTTAGAAACTTCC
1 GCTTTGACCCTAGAGACTTC-TTCCCCCTTAAGTCCACCTATCAGCTTTCACCTTAGAAACTTCC
*
980291 TAACCCTTAAGTCTACCTATCAGCTTTGACCTTGGAGACTT
65 TAACCCTTAAGTCTACCTATCAGCTTTGACCTTAGAGACTT
980332 CATTCGCCTT
Statistics
Matches: 86, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
130 19 0.22
131 67 0.78
ACGTcount: A:0.17, C:0.29, G:0.16, T:0.37
Consensus pattern (130 bp):
GCTTTGACCCTAGAGACTTCTTCCCCCTTAAGTCCACCTATCAGCTTTCACCTTAGAAACTTCCT
AACCCTTAAGTCTACCTATCAGCTTTGACCTTAGAGACTTTTTCCCCTTTTAAGTCTATCGTTCA
Found at i:980646 original size:44 final size:44
Alignment explanation
Indices: 980598--980686 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
980588 TTATCTCTTA
* *
980598 TTTGCCTGTTGGCTTTGAA-ACTGGAGACATCCTCCCCCCTTAAG
1 TTTGCCTGTAGGCTTTGAACA-TGGAAACATCCTCCCCCCTTAAG
* * *
980642 TTTGCCTGTAGGCTTTGACCATGGAAACTTCTTCCCCCCTTAAG
1 TTTGCCTGTAGGCTTTGAACATGGAAACATCCTCCCCCCTTAAG
980686 T
1 T
980687 CTACCTGTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 38 0.97
45 1 0.03
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (44 bp):
TTTGCCTGTAGGCTTTGAACATGGAAACATCCTCCCCCCTTAAG
Found at i:980781 original size:43 final size:41
Alignment explanation
Indices: 980633--981976 Score: 654
Period size: 43 Copynumber: 31.3 Consensus size: 41
980623 GACATCCTCC
* * *
980633 CCCCTTAAGTTTGCCTGT-AGGCTTTGACCATGGAAACTTCTT
1 CCCCTTAAGTCTGCCTGTCA-GCTTTGACCTTGGAGACTT-TT
* * * *
980675 CCCCCCTTAAGTCTACCTGTCGGCCTTAACCTTGGAGACTTCCTT
1 --CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT--TT
* * * *
980720 ACCCTTAACTCTGTCTGTCAGCTTTGACCTTGGAAACTTTGT
1 CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTT-T
* * * * *
980762 CCCCTTTAAGTCTACCTGTCAGCTTTCACATTAGAGACTTCGTC
1 CCCC-TTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT--TT
* ** *
980806 CCCCTTAAGTCTGCCAGTTGGCCTTGA-CTCTGGAGACTTCTT
1 CCCCTTAAGTCTGCCTGTCAGCTTTGACCT-TGGAGACTT-TT
* *
980848 CCCCCTTAAGTCTGCCTGTCAACTTTGACC-CGGAGACATTTT
1 -CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGAC-TTTT
* * *
980890 CCCCCTTTAAGTTTGCCTATCAGCTTTGACCCTGGAGACTTCTT
1 -CCCC-TTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
* * * *
980934 CACCCTTAAGTATGCCAGTC-GACTTTGACCTTGGAAACTTCAT
1 C-CCCTTAAGTCTGCCTGTCAG-CTTTGACCTTGGAGACTT-TT
* * * * *
980977 CCTCCTTAAGTTTGCTTGTTAGCTTTGACCTTAGAGACATATT
1 CC-CCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGAC-TTTT
* * *
981020 CCTCCTTAAGTCT-CGTTGCCACCTTTGA-CTCTGGAGACTTCCTT
1 CC-CCTTAAGTCTGC-CTGTCAGCTTTGACCT-TGGAGACTT--TT
** * * * *
981064 ATCCTTAAGTCTGTCTGTCAGCTTTGACCCTGGAAACTTAT
1 CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTTT
* * * * *
981105 CTCCCTTAAGTTTGCTTGTCAGCTTTGACCCTAGAGACTTCAT
1 C-CCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
* * ** *
981148 CCTCCTTAAGTTTGCCAGTTGGCTTTGA-CTCTAGAGACTTCTTT
1 CC-CCTTAAGTCTGCCTGTCAGCTTTGACCT-TGGAGAC-T-TTT
*
981192 CCCC-TAAGTCTGCCTGTCAGCTTTGACC-TGGAGACATCTT
1 CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGAC-TTTT
* *
981232 CCCCTTTTAAGTTTGCCTGTCAGCTTTGACATT-GAGACTTCTT
1 CCCC--TTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
* * * * * * *
981275 CACCCCTAAGTATGCCGGTCGGCTTTAACCTTGGAAACTTCAT
1 C-CCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
* * * * *
981318 CCTCCTTAAGTTTGCTTATCGGCTTTGACCTTGGAGACATATTC
1 CC-CCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGAC-T-TTT
* * * * *
981362 CCCCTTAAGTCTGGCTGCCACCTTTGA-CTCTAGAGACTTCCT
1 CCCCTTAAGTCTGCCTGTCAGCTTTGACCT-TGGAGACTT-TT
* * * * *
981404 CATCTTTAAGTCTGCCTGTCAGCATTGACCCTGGAAACTTTAT
1 C-CCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTT-T
* *
981447 CCCCCTTAAGTCTGCTTGTCAGCTTTGACCCTGGAGACTTTGT
1 -CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTT-T
** *
981490 CCACCTTAAGTCTGCAAGTCGGCTTTGACCTTGGAGACTTCTT
1 CC-CCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
* * * ** *
981533 CCCCCTTAAGTCTGCTTGTCGGCTTTTATATTGGAGACTTCAT
1 -CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
** * * * *
981576 CCCCTTAAGTCT-ATTAGTCAACTTTGACCCTGAAAACTTCTT
1 CCCCTTAAGTCTGCCT-GTCAGCTTTGACCTTGGAGACTT-TT
* * * * *
981618 CCCCACTTAAGTTTGCCTGTCGGCTTTGACCCTAGAGATTTTTT
1 -CCC-CTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGA-CTTTT
* * * * * * *
981662 CACCTTTAAGTCAAG--TACTCAGCTTTGACCCTAGAAACTTCATC
1 C-CCCTTAAGTC-TGCCT-GTCAGCTTTGACCTTGGAGACTT--TT
* *
981706 CCCCTTAAGTCTACCTGTC-GACTTTAACCTTGGAGACTTTGT
1 CCCCTTAAGTCTGCCTGTCAG-CTTTGACCTTGGAGACTTT-T
* * * *
981748 CCCCCTTCAGCCTGCCTATCAGCTTTGACGTTGGAGACTTCTT
1 -CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT-TT
* * * ** *
981791 CCCCCATTAAGCCCGGCTGTC-GACTTTGACCCCGGAGACTTCCT
1 -CCCC-TTAAGTCTGCCTGTCAG-CTTTGACCTTGGAGACTT-TT
* * *
981835 CACCCTTAAATCTGCCTGTC-GACTTTGACCCTAGAGACTTCTT
1 C-CCCTTAAGTCTGCCTGTCAG-CTTTGACCTTGGAGACTT-TT
* * * * *
981878 CGCCCTTAAGTTTGCCTATCAGCATTGAGCATGGAGACTTTCT
1 C-CCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTT-T
* * * * * *
981921 CCTCTTTATGTCTACCTATC-GACTTTGACCCTAGAGACTTTGTT
1 CC-CCTTAAGTCTGCCTGTCAG-CTTTGACCTTGGAGAC-TT-TT
981965 CCCCTTAAGTCT
1 CCCCTTAAGTCT
981977 ACCTATCGGC
Statistics
Matches: 1000, Mismatches: 224, Indels: 153
0.73 0.16 0.11
Matches are distributed among these distances:
40 6 0.01
41 13 0.01
42 142 0.14
43 691 0.69
44 138 0.14
45 10 0.01
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (41 bp):
CCCCTTAAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTTT
Found at i:980900 original size:86 final size:84
Alignment explanation
Indices: 980600--981917 Score: 734
Period size: 86 Copynumber: 15.3 Consensus size: 84
980590 ATCTCTTATT
** * * * *
980600 TGCCTGTTGGCTTTGAAACTGGAGACATCCTCCCCCCTTAAGTTTGCCTGT-AGGCTTTGACCAT
1 TGCCTGTCAGCTTTG-ACCTGGAGAC-TTCTTCCCCCTTAAGTTTGCCAGTCA-GCTTTGACC-T
*
980664 GGAAACTTCTTCCCCCCTTAAGTC
62 GGAGACTTCTT-CCCCCTTAAGTC
* * * * * * * * *
980688 TACCTGTCGGCCTTAACCTTGGAGACTTCCTT-ACCCTTAACTCTGTCTGTCAGCTTTGACCTTG
1 TGCCTGTCAGCTTTGACC-TGGAGACTT-CTTCCCCCTTAAGTTTGCCAGTCAGCTTTGACC-TG
* *
980752 GAAACTT-TGTCCCCTTTAAGTC
63 GAGACTTCT-TCCCCCTTAAGTC
* * * * * * ** *
980774 TACCTGTCAGCTTTCACATTAGAGACTTCGTCCCCCTTAAGTCTGCCAGTTGGCCTTGACTCTGG
1 TGCCTGTCAGCTTTGAC-CTGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAGCTTTGAC-CTGG
980839 AGACTTCTTCCCCCTTAAGTC
64 AGACTTCTTCCCCCTTAAGTC
* *
980860 TGCCTGTCAACTTTGACCCGGAGACATT-TTCCCCCTTTAAGTTTGCCTA-TCAGCTTTGACCCT
1 TGCCTGTCAGCTTTGACCTGGAGAC-TTCTTCCCCC-TTAAGTTTGCC-AGTCAGCTTTGA-CCT
* *
980923 GGAGACTTCTTCACCCTTAAGTA
62 GGAGACTTCTTCCCCCTTAAGTC
* * * * ** * *
980946 TGCCAGTC-GACTTTGACCTTGGAAACTTCATCCTCCTTAAGTTTGCTTGTTAGCTTTGACCTTA
1 TGCCTGTCAG-CTTTGACC-TGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAGCTTTGACC-TG
* * *
981010 GAGACATATTCCTCCTTAAGTC
63 GAGACTTCTTCCCCCTTAAGTC
* * * ** * * *
981032 T-CGTTGCCACCTTTGACTCTGGAGACTTCCTT-ATCCTTAAGTCTGTCTGTCAGCTTTGACCCT
1 TGC-CTGTCAGCTTTGAC-CTGGAGACTT-CTTCCCCCTTAAGTTTGCCAGTCAGCTTTGA-CCT
* * * *
981095 GGAAACTT-ATCTCCCTTAAGTT
62 GGAGACTTCTTCCCCCTTAAGTC
* * * * ** *
981117 TGCTTGTCAGCTTTGACCCTAGAGACTTCATCCTCCTTAAGTTTGCCAGTTGGCTTTGACTCTAG
1 TGCCTGTCAGCTTTGA-CCTGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAGCTTTGAC-CTGG
*
981182 AGACTTCTTTCCCC-TAAGTC
64 AGACTTCTTCCCCCTTAAGTC
* * * * *
981202 TGCCTGTCAGCTTTGACCTGGAGACATCTTCCCCTTTTAAGTTTGCCTGTCAGCTTTGACATTGA
1 TGCCTGTCAGCTTTGACCTGGAGACTTCTTCCCC-CTTAAGTTTGCCAGTCAGCTTTGACCTGGA
*
981267 GACTTCTTCACCCC-TAAGTA
65 GACTTCTTC-CCCCTTAAGTC
* * * * * * * *
981287 TGCCGGTCGGCTTTAACCTTGGAAACTTCATCCTCCTTAAGTTTGCTTA-TCGGCTTTGACCTTG
1 TGCCTGTCAGCTTTGACC-TGGAGACTTCTTCCCCCTTAAGTTTGC-CAGTCAGCTTTGACC-TG
* *
981351 GAGACATATTCCCCCTTAAGTC
63 GAGACTTCTTCCCCCTTAAGTC
* * * * * ** * * * *
981373 TGGCTGCCACCTTTGACTCTAGAGACTTCCTCATCTTTAAGTCTGCCTGTCAGCATTGACCCTGG
1 TGCCTGTCAGCTTTGAC-CTGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAGCTTTGA-CCTGG
*
981438 AAACTT-TATCCCCCTTAAGTC
64 AGACTTCT-TCCCCCTTAAGTC
* * * * *
981459 TGCTTGTCAGCTTTGACCCTGGAGACTT-TGTCCACCTTAAGTCTGCAAGTCGGCTTTGACCTTG
1 TGCCTGTCAGCTTTGA-CCTGGAGACTTCT-TCCCCCTTAAGTTTGCCAGTCAGCTTTGACC-TG
981523 GAGACTTCTTCCCCCTTAAGTC
63 GAGACTTCTTCCCCCTTAAGTC
* * * ** * * *** * *
981545 TGCTTGTCGGCTTTTATATTGGAGACTTCAT-CCCCTTAAGTCTATTAGTCAACTTTGACCCTGA
1 TGCCTGTCAGCTTTGA-CCTGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAGCTTTGA-CCTGG
* *
981609 AAACTTCTTCCCCACTTAAGTT
64 AGACTTCTTCCCC-CTTAAGTC
* * * * * * ** * * *
981631 TGCCTGTCGGCTTTGACCCTAGAGATTTTTTCACCTTTAAGTCAAG-TACTCAGCTTTGACCCTA
1 TGCCTGTCAGCTTTGA-CCTGGAGACTTCTTCCCCCTTAAGT-TTGCCAGTCAGCTTTGA-CCTG
* *
981695 GAAACTTCATCCCCCTTAAGTC
63 GAGACTTCTTCCCCCTTAAGTC
* * * ** *
981717 TACCTGTC-GACTTTAACCTTGGAGACTT-TGTCCCCCTTCAGCCTGCCTA-TCAGCTTTGACGT
1 TGCCTGTCAG-CTTTGACC-TGGAGACTTCT-TCCCCCTTAAGTTTGCC-AGTCAGCTTTGAC-C
*
981779 TGGAGACTTCTTCCCCCATTAAGCC
61 TGGAGACTTCTTCCCCC-TTAAGTC
* * * * * * * *
981804 CGGCTGTC-GACTTTGACCCCGGAGACTTCCTCACCCTTAAATCTGCCTGTC-GACTTTGACCCT
1 TGCCTGTCAG-CTTTGA-CCTGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAG-CTTTGA-CCT
* * *
981867 AGAGACTTCTTCGCCCTTAAGTT
62 GGAGACTTCTTCCCCCTTAAGTC
* * *
981890 TGCCTATCAGCATTGAGCATGGAGACTT
1 TGCCTGTCAGCTTTGA-CCTGGAGACTT
981918 TCTCCTCTTT
Statistics
Matches: 946, Mismatches: 225, Indels: 120
0.73 0.17 0.09
Matches are distributed among these distances:
84 28 0.03
85 209 0.22
86 526 0.56
87 159 0.17
88 24 0.03
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.34
Consensus pattern (84 bp):
TGCCTGTCAGCTTTGACCTGGAGACTTCTTCCCCCTTAAGTTTGCCAGTCAGCTTTGACCTGGAG
ACTTCTTCCCCCTTAAGTC
Found at i:980984 original size:129 final size:127
Alignment explanation
Indices: 980632--981976 Score: 844
Period size: 129 Copynumber: 10.4 Consensus size: 127
980622 AGACATCCTC
* * * *
980632 CCCCCTTAAGTTTGCCTGT-AGGCTTTGACCATGGAAACTTCTTCCCCCCTTAAGTCTACCTGTC
1 CCCCCTTAAGTCTGCCTGTCA-GCTTTGACCCTGGAGACTTCTT-CCCCCTTAAGTCTGCCTGTC
* * * * * * *
980696 GGCCTTAACCTTGGAGACTTCCTT-ACCCTTAACTCTGTCTGTCAGCTTTGACCTTGGAAACTTT
64 GACTTTGACCTTGGAGACTT-CTTCCCCCTTAAGTCTGCCTGTCAGCTTTGACC-TGGAGACTTT
980760 GT
127 -T
* * * ** * * * * *
980762 CCCCTTTAAGTCTACCTGTCAGCTTTCACATTAGAGACTTCGTCCCCCTTAAGTCTGCCAGTTGG
1 CCCCCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGA
* * *
980827 CCTTGA-CTCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAACTTTGACCCGGAGACATTTT
66 CTTTGACCT-TGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAGCTTTGACCTGGAGAC-TTTT
* * * * *
980890 CCCCCTTTAAGTTTGCCTATCAGCTTTGACCCTGGAGACTTCTTCACCCTTAAGTATGCCAGTCG
1 CCCCC-TTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCG
* * * * * * * *
980955 ACTTTGACCTTGGAAACTTCATCCTCCTTAAGTTTGCTTGTTAGCTTTGACCTTAGAGACATATT
65 ACTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAGCTTTGACC-TGGAGAC-TTTT
* * * * * ** *
981020 CCTCCTTAAGTCT-CGTTGCCACCTTTGACTCTGGAGACTTCCTT-ATCCTTAAGTCTGTCTGTC
1 CCCCCTTAAGTCTGC-CTGTCAGCTTTGACCCTGGAGACTT-CTTCCCCCTTAAGTCTGCCTGTC
* * * * * * *
981083 -AGCTTTGACCCTGGAAACTT-ATCTCCCTTAAGTTTGCTTGTCAGCTTTGACCCTAGAGACTTC
64 GA-CTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAGCTTTGA-CCTGGAGACTT-
*
981146 AT
126 TT
* * * ** * * *
981148 CCTCCTTAAGTTTGCCAGTTGGCTTTGACTCTAGAGACTTCTTTCCCC-TAAGTCTGCCTGTC-A
1 CCCCCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGA
* * * * *
981211 GCTTTGACC-TGGAGACATCTTCCCCTTTTAAGTTTGCCTGTCAGCTTTGACATTGAGACTTCTT
66 -CTTTGACCTTGGAGACTTCTTCCCC-CTTAAGTCTGCCTGTCAGCTTTGACCTGGAGACTT-TT
* * * * * * * * * * *
981275 CACCCC-TAAGTATGCCGGTCGGCTTTAACCTTGGAAACTTCATCCTCCTTAAGTTTGCTTATCG
1 C-CCCCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCG
* * * * * * * *
981339 GCTTTGACCTTGGAGACATATTCCCCCTTAAGTCTGGCTGCCACCTTTGACTCTAGAGACTTCCT
65 ACTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAGCTTTGAC-CTGGAGACTT-TT
** * * * *
981404 CATCTTTAAGTCTGCCTGTCAGCATTGACCCTGGAAACTT-TATCCCCCTTAAGTCTGCTTGTC-
1 CCCCCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCT-TCCCCCTTAAGTCTGCCTGTCG
* * ** *
981467 AGCTTTGACCCTGGAGACTT-TGTCCACCTTAAGTCTGCAAGTCGGCTTTGACCTTGGAGACTTC
65 A-CTTTGACCTTGGAGACTTCT-TCCCCCTTAAGTCTGCCTGTCAGCTTTGACC-TGGAGACTT-
981531 TT
126 TT
* * * *** * ** *
981533 CCCCCTTAAGTCTGCTTGTCGGCTTTTATATTGGAGACTTCAT-CCCCTTAAGTCT-ATTAGTCA
1 CCCCCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCT-GTCG
* * * * * * *
981596 ACTTTGACCCTGAAAACTTCTTCCCCACTTAAGTTTGCCTGTCGGCTTTGACCCTAGAGATTTTT
65 ACTTTGACCTTGGAGACTTCTTCCCC-CTTAAGTCTGCCTGTCAGCTTTGA-CCTGGAGA-CTTT
981661 T
127 T
* * * * * * * *
981662 CACCTTTAAGTCAAG--TACTCAGCTTTGACCCTAGAAACTTCATCCCCCTTAAGTCTACCTGTC
1 CCCCCTTAAGTC-TGCCT-GTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTC
* * * * *
981725 GACTTTAACCTTGGAGACTT-TGTCCCCCTTCAGCCTGCCTATCAGCTTTGACGTTGGAGACTTC
64 GACTTTGACCTTGGAGACTTCT-TCCCCCTTAAGTCTGCCTGTCAGCTTTGAC-CTGGAGACTT-
981789 TT
126 TT
* * * * * * *
981791 CCCCCATTAAGCCCGGCTGTC-GACTTTGACCCCGGAGACTTCCTCACCCTTAAATCTGCCTGTC
1 CCCCC-TTAAGTCTGCCTGTCAG-CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTC
* * * * * * *
981855 GACTTTGACCCTAGAGACTTCTTCGCCCTTAAGTTTGCCTATCAGCATTGAGCATGGAGACTTTC
64 GACTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAGCTTTGA-CCTGGAGACTTT-
981920 T
127 T
* * * * * * *
981921 CCTCTTTATGTCTACCTATC-GACTTTGACCCTAGAGACTT-TGTTCCCCTTAAGTCT
1 CCCCCTTAAGTCTGCCTGTCAG-CTTTGACCCTGGAGACTTCT-TCCCCCTTAAGTCT
981977 ACCTATCGGC
Statistics
Matches: 955, Mismatches: 212, Indels: 97
0.76 0.17 0.08
Matches are distributed among these distances:
126 7 0.01
127 76 0.08
128 190 0.20
129 491 0.51
130 186 0.19
131 5 0.01
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (127 bp):
CCCCCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGA
CTTTGACCTTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCAGCTTTGACCTGGAGACTTTT
Found at i:981913 original size:130 final size:130
Alignment explanation
Indices: 981684--981917 Score: 292
Period size: 130 Copynumber: 1.8 Consensus size: 130
981674 AAGTACTCAG
* * * * *
981684 CTTTGACCCTAGAAACTTCATCCCCCTTAAGTCTACCTGTCGACTTTAACCTTGGAGACTTTGTC
1 CTTTGACCCCAGAAACTTCATCACCCTTAAATCTACCTGTCGACTTTAACCCTAGAGACTTTGTC
* * *
981749 CCCCTTCAGCCTGCCTATCAGCTTTGACGTTGGAGACTTCTTCCCCCATTAAGCCCGGCTGTCGA
66 CCCCTTAAGCCTGCCTATCAGCATTGACGATGGAGACTTCTTCCCCCATTAAGCCCGGCTGTCGA
* * * * *
981814 CTTTGACCCCGGAGACTTCCTCACCCTTAAATCTGCCTGTCGACTTTGACCCTAGAGACTTCT-T
1 CTTTGACCCCAGAAACTTCATCACCCTTAAATCTACCTGTCGACTTTAACCCTAGAGACTT-TGT
* **
981878 CGCCCTTAAGTTTGCCTATCAGCATTGA-GCATGGAGACTT
65 CCCCCTTAAGCCTGCCTATCAGCATTGACG-ATGGAGACTT
981918 TCTCCTCTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
129 1 0.01
130 84 0.98
131 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.18, T:0.31
Consensus pattern (130 bp):
CTTTGACCCCAGAAACTTCATCACCCTTAAATCTACCTGTCGACTTTAACCCTAGAGACTTTGTC
CCCCTTAAGCCTGCCTATCAGCATTGACGATGGAGACTTCTTCCCCCATTAAGCCCGGCTGTCGA
Found at i:982487 original size:42 final size:42
Alignment explanation
Indices: 982371--982524 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 42
982361 CCCGTCGCCT
* *
982371 TTAAGTTTGCCTGTCAGCTTTA-A-CCATGGAGACTTCTTCCCTC
1 TTAAGTCTGCCTGTCAGC-TTAGACCCA-AGAGACTTCTTCCC-C
* * * * **
982414 TTATGTCTACCTGTCGGCTTTGACCTTAGAGACTTCGTTCCCC
1 TTAAGTCTGCCTGTCAGCTTAGACCCAAGAGACTTC-TTCCCC
* *
982457 TTAAG-CTGCCTGTCAGCTTAGACCCAAGAGATTTTCTTTACCC
1 TTAAGTCTGCCTGTCAGCTTAGACCCAAGAGA-CTTC-TTCCCC
* *
982500 TT-AGTCTTCCGGTCAGCTTAGACCC
1 TTAAGTCTGCCTGTCAGCTTAGACCC
982525 GAGTGACCTC
Statistics
Matches: 87, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
42 25 0.29
43 56 0.64
44 6 0.07
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (42 bp):
TTAAGTCTGCCTGTCAGCTTAGACCCAAGAGACTTCTTCCCC
Found at i:983652 original size:78 final size:78
Alignment explanation
Indices: 983554--983754 Score: 235
Period size: 79 Copynumber: 2.6 Consensus size: 78
983544 AATAACAGGG
* * * *
983554 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTATGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
983617 GAAAAAAAATCGGGA
64 GAAAAAAAACCGGGA
* *
983632 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-TTTAG
* * * *
983697 GAATAAAGCCGGGG
65 AAAAAAAACCGGGA
* * *
983711 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
983755 GAAATAACGA
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
77 7 0.07
78 46 0.44
79 52 0.50
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (78 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAACCGGGA
Found at i:983742 original size:79 final size:78
Alignment explanation
Indices: 983551--983751 Score: 233
Period size: 78 Copynumber: 2.6 Consensus size: 78
983541 GATAATAACA
* * * * ** *
983551 GGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTATGAGAAATCGATGATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGATT
*
983616 AGAAAAAAAATCG
66 AGAAAAAAAACCG
* *
983629 GGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA--
* * * *
983693 TTGGGAATAAAGCCG
64 TTAGAAAAAAAACCG
* *
983708 GGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
983752 GATGAAATAA
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
77 1 0.01
78 52 0.50
79 50 0.49
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGATT
AGAAAAAAAACCG
Found at i:983746 original size:28 final size:28
Alignment explanation
Indices: 983706--983777 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
983696 GGAATAAAGC
** *
983706 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
983734 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
983762 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
983778 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:986271 original size:13 final size:13
Alignment explanation
Indices: 986253--986278 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
986243 ACAAAGATCC
986253 ATGTATCGATACA
1 ATGTATCGATACA
986266 ATGTATCGATACA
1 ATGTATCGATACA
986279 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:986274 original size:33 final size:33
Alignment explanation
Indices: 986232--986298 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
986222 AAAATTTCCA
***
986232 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
986265 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
986298 A
1 A
986299 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:986342 original size:19 final size:18
Alignment explanation
Indices: 986318--986385 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
986308 CAGTAGCTAA
986318 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
986337 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
986352 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
986369 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
986386 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:986358 original size:13 final size:13
Alignment explanation
Indices: 986340--986364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
986330 ACAATACTTA
986340 TGTATCGATACAT
1 TGTATCGATACAT
986353 TGTATCGATACA
1 TGTATCGATACA
986365 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:986362 original size:32 final size:32
Alignment explanation
Indices: 986321--986383 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
986311 TAGCTAATTA
*
986321 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
986353 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
986384 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:986465 original size:21 final size:21
Alignment explanation
Indices: 986441--986497 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
986431 CATTTGTAGG
986441 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
986462 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
986483 ATGTATCGATACATT
1 ATGTATCGATACATT
986498 TGGAATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:986525 original size:15 final size:15
Alignment explanation
Indices: 986505--986534 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
986495 ATTTGGAATT
986505 TTTTTTTTTTTTCAA
1 TTTTTTTTTTTTCAA
986520 TTTTTTTTTTTTCAA
1 TTTTTTTTTTTTCAA
986535 ACACTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTTTTTTTCAA
Found at i:986854 original size:43 final size:41
Alignment explanation
Indices: 986792--987465 Score: 277
Period size: 43 Copynumber: 15.8 Consensus size: 41
986782 CTTGCATCTC
* * *
986792 AAGTCTGCCTGTCAACTTTGACCCTGGAGACTTCTTCGTCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTC-CCTT
* *
986834 AAAGTCTGCCAGTCAGCTTTGACCCT-GAGACTTCATCCCTCTT
1 -AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTC-TTCC-CTT
* * * *
986877 AAGTCTGCTTGTC-GACTTTGACCTTGGAGACTTTTTCTCCCCTT
1 AAGTCTGCCTGTCAG-CTTTGACCCTAGAGAC---TTCTTCCCTT
* * * * *
986921 AAGTTTGTCTGTCGGCTTTGAGCCTAGAAACTTCCTTACCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTT-CTT-CCCTT
* *
986964 AAGTCTGCTTGTCAGCTTTGACCTTAGAGACTTCTTCGCCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTT--CCCTT
* * *
987007 AAGTCTGCTTGTCGGCTTTGTCCCTAGAGACTTCTTCCCCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTT--CCCTT
* * *
987050 AAGTTTGCCTATCGGCTTTGACCCTAGAGACTTCGTTTCCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTC--TTCCCTT
** * *
987093 AAGTCTG-CTGTTGGCTTTGACCCATA-AGACTTTCTTTGCTTT
1 AAGTCTGCCTGTCAGCTTTGACCC-TAGAGAC-TTC-TTCCCTT
*** ** * * * **
987135 TTTTCTGCCTGTTGGCTTAGA-CCTGGGAGATTTCTTTATCTT
1 AAGTCTGCCTGTCAGCTTTGACCCT-AGAGACTTC-TTCCCTT
** ** * * * *
987177 TTGTCTGCCCATCAACTTTGACTCGAGAGACTTTATTACCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-TTCTT-CCCTT
* * * * * ** * * *
987220 -CGTTTACCCGTCAACTTAAACCCGAGAGACTACTTCATCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTC-CCTT
* * * *
987261 ATGTCTGCCTGTCGGCTTTGACGCTGGAGACTTCTTTCCCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTC-TT-CCCTT
* * * *
987304 AAGTCTGCTTATC-GACTTTCACCCTAGATACTTCTTCCCCCCTT
1 AAGTCTGCCTGTCAG-CTTTGACCCTAGAGACTTCTT---CCCTT
* * * * **
987348 AAGTTTGCCTGTCA-TTTTGACCTTACAGACTTCCACACCCTT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTT-C-TTCCCTT
* * * * *
987390 AAGTTTGTCTGTCGGCTTTGACACTAGAGACTTTGTTCCCATT
1 AAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-TTCTTCCC-TT
* * * *
987433 AAATCTACCTATCGGCTTTGA-CCTAAGAGACTT
1 AAGTCTGCCTGTCAGCTTTGACCCT-AGAGACTT
987466 TTTTTGCCTT
Statistics
Matches: 482, Mismatches: 114, Indels: 71
0.72 0.17 0.11
Matches are distributed among these distances:
40 1 0.00
41 10 0.02
42 162 0.34
43 254 0.53
44 45 0.09
45 7 0.01
46 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (41 bp):
AAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTCTTCCCTT
Found at i:987128 original size:86 final size:85
Alignment explanation
Indices: 986792--987124 Score: 327
Period size: 86 Copynumber: 3.9 Consensus size: 85
986782 CTTGCATCTC
* ** * * * *
986792 AAGTCTGCCTGTCAACTTTGACCCTGGAGACTTCTTCGT--CTTAAAGTCTGCCAGTCAGCTTTG
1 AAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTCTTC-TCCCTT-AAGTCTG-CTGTCGGCTTTG
* *
986855 ACCCT-GAGACTTCATCCCTCTT
63 ACCCTAGAGACTTCTTCCCCCTT
* * * *
986877 AAGTCTGCTTGTCGACTTTGACCTTGGAGACTTTTTCTCCCCTTAAGTTTGTCTGTCGGCTTTGA
1 AAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTCTTCT-CCCTTAAGTCTG-CTGTCGGCTTTGA
* * *
986942 GCCTAGAAACTTCCTT-ACCCTT
64 CCCTAGAGACTT-CTTCCCCCTT
* * *
986964 AAGTCTGCTTGTCAGCTTTGACCTTAGAGACTTCTTCGCCCTTAAGTCTGCTTGTCGGCTTTGTC
1 AAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTCTTCTCCCTTAAGTCTGC-TGTCGGCTTTGAC
987029 CCTAGAGACTTCTTCCCCCTT
65 CCTAGAGACTTCTTCCCCCTT
* * * * *
987050 AAGTTTGCCTATCGGCTTTGACCCTAGAGACTTCGTT-TCCCTTAAGTCTGCTGTTGGCTTTGAC
1 AAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTC-TTCTCCCTTAAGTCTGCTGTCGGCTTTGAC
987114 CCATA-AGACTT
65 CC-TAGAGACTT
987125 TCTTTGCTTT
Statistics
Matches: 208, Mismatches: 31, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
84 1 0.00
85 56 0.27
86 101 0.49
87 48 0.23
88 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (85 bp):
AAGTCTGCTTGTCGGCTTTGACCTTAGAGACTTCTTCTCCCTTAAGTCTGCTGTCGGCTTTGACC
CTAGAGACTTCTTCCCCCTT
Found at i:987128 original size:129 final size:129
Alignment explanation
Indices: 986835--987124 Score: 370
Period size: 129 Copynumber: 2.2 Consensus size: 129
986825 CTTCGTCTTA
** * *
986835 AAGTCTGCCAGTCAGCTTTGACCCTGAGACTTCATCCCTCTTAAGTCTGCTTGTCGACTTTGACC
1 AAGTCTGCTTGTCAGCTTTGACCCTAAGACTTCTTCCCTCTTAAGTCTGCTTGTCGACTTTGACC
* * * * * *
986900 TTGGAGACTTTTTCTCCCCTTAAGTTTGTCTGTCGGCTTTGAGCCTAGAAACTTCCTTACCCTT
66 CTAGAGACTTCTTCTCCCCTTAAGTTTGCCTATCGGCTTTGACCCTAGAAACTTCCTTACCCTT
* * *
986964 AAGTCTGCTTGTCAGCTTTGACCTTAGAGACTTCTTCGCC-CTTAAGTCTGCTTGTCGGCTTTGT
1 AAGTCTGCTTGTCAGCTTTGACCCTA-AGACTTCTTC-CCTCTTAAGTCTGCTTGTCGACTTTGA
* * *
987028 CCCTAGAGACTTCTTC-CCCCTTAAGTTTGCCTATCGGCTTTGACCCTAGAGACTTCGTTTCCCT
64 CCCTAGAGACTTCTTCTCCCCTTAAGTTTGCCTATCGGCTTTGACCCTAGAAACTTCCTTACCCT
987092 T
129 T
**
987093 AAGTCTGC-TGTTGGCTTTGACCCATAAGACTT
1 AAGTCTGCTTGTCAGCTTTGACCC-TAAGACTT
987125 TCTTTGCTTT
Statistics
Matches: 139, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
128 18 0.13
129 75 0.54
130 44 0.32
131 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.37
Consensus pattern (129 bp):
AAGTCTGCTTGTCAGCTTTGACCCTAAGACTTCTTCCCTCTTAAGTCTGCTTGTCGACTTTGACC
CTAGAGACTTCTTCTCCCCTTAAGTTTGCCTATCGGCTTTGACCCTAGAAACTTCCTTACCCTT
Found at i:987535 original size:42 final size:42
Alignment explanation
Indices: 987473--987603 Score: 140
Period size: 42 Copynumber: 3.1 Consensus size: 42
987463 CTTTTTTTGC
* *
987473 CTTTTATCTGCCCGTTGGCTTAAACCCGAGAGACCTT-TCTAT
1 CTTTTATCTGCCCGTCGGCTTAAACCAGAGAGA-CTTCTCTAT
* * * * * *
987515 ATTTTGTCTGCCCATCGGCTTAGACTAGAAAGACTTCTCTAT
1 CTTTTATCTGCCCGTCGGCTTAAACCAGAGAGACTTCTCTAT
* *
987557 CTTTTATCTGTCCGTCGGCTTAGAA-CTGAGAGACTTCTCTAT
1 CTTTTATCTGCCCGTCGGCTTA-AACCAGAGAGACTTCTCTAT
987599 CTTTT
1 CTTTT
987604 GTCTACCTGT
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 3 0.04
42 67 0.94
43 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (42 bp):
CTTTTATCTGCCCGTCGGCTTAAACCAGAGAGACTTCTCTAT
Found at i:987870 original size:44 final size:43
Alignment explanation
Indices: 987755--987987 Score: 177
Period size: 43 Copynumber: 5.4 Consensus size: 43
987745 TTGACCTTGC
* * * * * *
987755 AGACTTCGTCCCTCTTAAGTCTGCCTATCGGCTTTGACCATAG
1 AGACTTCTTCCCCCTTAAGTTTGCTTATTGGCTTTGACCCTAG
* *
987798 CGACTTATTCCCCCTTAAGTTTGCTTATTGGCTTTGACCCTAG
1 AGACTTCTTCCCCCTTAAGTTTGCTTATTGGCTTTGACCCTAG
** *
987841 AGACTTCTTCCCCCCTTAAGTTTGCTTATTGAATTTGACCCTAT
1 AGACTTCTT-CCCCCTTAAGTTTGCTTATTGGCTTTGACCCTAG
** * * * * *
987885 AGACTT-TCTCATCCTAAAGTCTGCGTGTCGGCTTTGACCCT-G
1 AGACTTCT-TCCCCCTTAAGTTTGCTTATTGGCTTTGACCCTAG
* * * * *
987927 AACACTTCTTCGCCCTTAAGTCTGCCTGTTGGCTTT-AGCCC-AGG
1 -AGACTTCTTCCCCCTTAAGTTTGCTTATTGGCTTTGA-CCCTA-G
*
987971 AGATTTCTTCCCCCTTA
1 AGACTTCTTCCCCCTTA
987988 TATCTACTTG
Statistics
Matches: 151, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
42 1 0.01
43 110 0.73
44 40 0.26
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.36
Consensus pattern (43 bp):
AGACTTCTTCCCCCTTAAGTTTGCTTATTGGCTTTGACCCTAG
Found at i:988177 original size:42 final size:42
Alignment explanation
Indices: 988080--988178 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 42
988070 CCATTGTTTG
* *
988080 CCCAACAGCTTAGAGTTGGGAGACCTCTCTATCTTTTATCTA
1 CCCATCAGCTTAGACTTGGGAGACCTCTCTATCTTTTATCTA
* * * * *
988122 CCCGTCGGCTTAGACTTGGGATACTTCTCTATCTTTTGTCTA
1 CCCATCAGCTTAGACTTGGGAGACCTCTCTATCTTTTATCTA
*
988164 CCCATCAGTTTAGAC
1 CCCATCAGCTTAGAC
988179 CCTGGATGCA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.35
Consensus pattern (42 bp):
CCCATCAGCTTAGACTTGGGAGACCTCTCTATCTTTTATCTA
Found at i:988368 original size:43 final size:43
Alignment explanation
Indices: 988297--988591 Score: 208
Period size: 43 Copynumber: 6.8 Consensus size: 43
988287 TACCGGTCAG
** *
988297 CTTTGA-CCTAGGAGACTTTTTCGCCCTTAAGTCTGCTTGTCGA
1 CTTTGACCCTA-GAGACTTCGTCCCCCTTAAGTCTGCTTGTCGA
* * * * * *
988340 CTTTAACCATGGAGACTTCGTCCCCCTTAAATCTACCTGTCCG-
1 CTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTGCTTGT-CGA
* * * * * *
988383 CTTTGACCTTGGAGATTTTTC-CCCCCCTTAAGTTTGCTTGTCGG
1 CTTTGACCCTAGAGA--CTTCGTCCCCCTTAAGTCTGCTTGTCGA
* *
988427 CTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGTCTAT-T-GA
1 CTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTG-CT-TGTCGA
* * * * *
988470 CTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCGG
1 CTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTGCTTGTCGA
* * * * *
988513 CTTTGACCTTAGAGACATCATCCTCCTTAAGTCTGCTTGTCAA
1 CTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTGCTTGTCGA
* *
988556 CTTTGACCCT-GTAAAC-TCTGTTCCCCTTAAGTCTGC
1 CTTTGACCCTAG-AGACTTC-GTCCCCCTTAAGTCTGC
988592 CTACTGGCTT
Statistics
Matches: 197, Mismatches: 43, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 8 0.04
43 149 0.76
44 35 0.18
45 4 0.02
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (43 bp):
CTTTGACCCTAGAGACTTCGTCCCCCTTAAGTCTGCTTGTCGA
Found at i:988422 original size:87 final size:86
Alignment explanation
Indices: 988287--988456 Score: 216
Period size: 87 Copynumber: 2.0 Consensus size: 86
988277 TTATCAAGTT
* *
988287 TACCGGTCAGCTTTGACCTAGGAGACTTTTTCGCCCTTAAGTCTGCTTGTCGACTTTAACCATGG
1 TACCGGTCAGCTTTGACCTAGGAGACTTTTTCCCCCTTAAGTCTGCTTGTCGACTTTAACCATAG
* *
988352 AGACTTCGTCCCCCTTAAATC
66 AGACTTCCTCACCCTTAAATC
* * * * * * *
988373 TACCTGTCCGCTTTGACCTTGGAGA-TTTTTCCCCCCCTTAAGTTTGCTTGTCGGCTTTGACCCT
1 TACCGGTCAGCTTTGACCTAGGAGACTTTTT--CCCCCTTAAGTCTGCTTGTCGACTTTAACCAT
988437 AGAGACTTCCTCACCCTTAA
64 AGAGACTTCCTCACCCTTAA
988457 GTCTGTCTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
85 5 0.07
86 22 0.31
87 44 0.62
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.34
Consensus pattern (86 bp):
TACCGGTCAGCTTTGACCTAGGAGACTTTTTCCCCCTTAAGTCTGCTTGTCGACTTTAACCATAG
AGACTTCCTCACCCTTAAATC
Found at i:988603 original size:129 final size:129
Alignment explanation
Indices: 988351--988616 Score: 297
Period size: 129 Copynumber: 2.1 Consensus size: 129
988341 TTTAACCATG
* **
988351 GAGACTTCGTCCCCCTTAAATCTACCTGTCCGCTTTGACCTTGGAGATTTTTCCCCCCCTTAAGT
1 GAGACTTCGTCCCCCTTAAATCTACCTGTCCGCTTTGACCTTAGAGA-TCATCCCCCCCTTAAGT
* ** * * *
988416 TTGCTTGTCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGTCTATTGACTTTGACCCT-
65 CTGCTTGTCAACTTTGACCCTAGAAACTTCCTCACCCTTAAGTCTGCCTACTGACTTTGA-CCTA
988480 A
129 A
* * * * * *
988481 GAGACTTCTTCGCCCTTAAATCTGCCTGTCGGCTTTGACCTTAGAGA-CATCATCCTCCTTAAGT
1 GAGACTTCGTCCCCCTTAAATCTACCTGTCCGCTTTGACCTTAGAGATCATC-CCCCCCTTAAGT
** *
988545 CTGCTTGTCAACTTTGACCCT-GTAAACTCTGTTC-CCCTTAAGTCTGCCTACTGGCTTTGACCT
65 CTGCTTGTCAACTTTGACCCTAG-AAACT-TCCTCACCCTTAAGTCTGCCTACTGACTTTGACCT
988608 AA
128 AA
988610 GAGACTT
1 GAGACTT
988617 TCTTTACCCT
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
128 6 0.05
129 63 0.55
130 45 0.39
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (129 bp):
GAGACTTCGTCCCCCTTAAATCTACCTGTCCGCTTTGACCTTAGAGATCATCCCCCCCTTAAGTC
TGCTTGTCAACTTTGACCCTAGAAACTTCCTCACCCTTAAGTCTGCCTACTGACTTTGACCTAA
Found at i:988882 original size:43 final size:43
Alignment explanation
Indices: 988766--989615 Score: 487
Period size: 43 Copynumber: 19.8 Consensus size: 43
988756 TCTACCATTA
* * * * *
988766 GCTTTGACCCGGGATACTTCTTCGCCCTTAAGTCTACTTGTCG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * * *
988809 GC-TTGA-CCTAGGAGAATTCTTCGCCCTTAAGTCTTCTTGTCA
1 GCTTTGACCCT-GGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * * * *
988851 GCTTTGACCCTGGAAACTTCATCCCCTTTAAGTCTACCTGTCA
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * * * *
988894 GCTTTGACCCTAGAAACTTCGT-CCCTTTAAGT-TTGCCAGTCG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTT-CCTGTCG
* * * * *
988936 GCTTGGACCCTGGAGACTTCTTCCTCC-GAAGT-TTGCCTATCA
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTT-CCTGTCG
* * * * *
988978 ACTTTGA-CGTAGAGACATCTTCCCCCCTTAAGT-TTGCCTATCG
1 GCTTTGACCCTGGAGACTTCTT-CCCCCTTAAGTCTT-CCTGTCG
* * * * **
989021 GCTTTGACCTTGGAGACTTTTTCGCCCTTAAGTCTGCCAATCG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * * *
989064 GCTTTGACCCTAGAAACTT-TGTCCCCCTTAAGT-TTGCTTATCG
1 GCTTTGACCCTGGAGACTTCT-TCCCCCTTAAGTCTT-CCTGTCG
* * * * *
989107 GCTTCGGCCTTGGAGACATCTTCCCCCTAAAGTCTGT-CTGTCAG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCT-TCCTGTC-G
* * * *
989151 G-TTTGACCTTAGAGAC-T-TTCGCACCCTTAAGTCTGCTTGTCG
1 GCTTTGACCCTGGAGACTTCTTC-C-CCCTTAAGTCTTCCTGTCG
* * **** * * *
989193 GCTTTCACCCTGGAGACTTCGTCCCAAAAAAGTCTGCCAGTTG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* *
989236 GCTTTGACCC-GAGAGACTTCTTCCTCCCTTAAGTCTACTTGTCG
1 GCTTTGACCCTG-GAGACTTCTTCC-CCCTTAAGTCTTCCTGTCG
* * * * * * *
989280 ACTTTGACCTTAGAGATTTCATCCCCTTTAAGT-TTGCCAGTCG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTT-CCTGTCG
* * * *
989323 GCTTTGACCTTGGAAACTTCTTCCCCCTTAAGTCTGCCAGTCG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * *
989366 GCTTTGACCCTGGAGACTTCTTCGCCCCTCAAGTCTGCCT-ACG
1 GCTTTGACCCTGGAGACTTCTTC-CCCCTTAAGTCTTCCTGTCG
* * * ** * * *
989409 TGCTTT-AACCTAGAAACTTCGACCCCCTTAAGTCTGCTTGTCA
1 -GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * * * * *
989452 GCTTTGACCTTGAAGACTTCGTCCCCTTTAAGTCTACCTGTCA
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* * * * * * *
989495 GCTTTGACCCTAGAGTCTTCCTCACCCATAAGTCTACTTGTCG
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
* ** * *
989538 GCTTTGACCTTGGAGACTTCTTTGCCATTAAGT-TTGCCTGTCA
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTT-CCTGTCG
* * * *
989581 GCTTTGAGCATTGAGACTTCTGCCCCCTTAAGTCT
1 GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCT
989616 GCCTATCGAC
Statistics
Matches: 622, Mismatches: 153, Indels: 63
0.74 0.18 0.08
Matches are distributed among these distances:
41 17 0.03
42 115 0.18
43 417 0.67
44 70 0.11
45 3 0.00
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33
Consensus pattern (43 bp):
GCTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTTCCTGTCG
Found at i:989569 original size:86 final size:86
Alignment explanation
Indices: 988292--989617 Score: 645
Period size: 86 Copynumber: 15.5 Consensus size: 86
988282 AAGTTTACCG
** * * * *
988292 GTCAGCTTTGA-CCTAGGAGACTTTTTCGCCCTTAAGTCTGCTTGTCGACTTTAACCATGGAGAC
1 GTCAGCTTTGACCCTA-GAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGAC
* * *
988356 TTCGTCCCCCTTAAATCTACCT
65 TTCTTCCCCCTTAAGTCTGCCT
* * * * * *
988378 GTCCGCTTTGACCTTGGAGATTTTTCC-CCCCCTTAAGTTTGCTTGTCGGCTTTGACCCTAGAGA
1 GTCAGCTTTGACCCTAGAGA--CTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGA
* * *
988442 CTTCCTCACCCTTAAGTCTGTCT
64 CTTCTTCCCCCTTAAGTCTGCCT
* * * * * * * *
988465 AT-TGACTTTGACCCTAGAGACTTCTTCGCCCTTAAATCTGCCTGTCGGCTTTGACCTTAGAGAC
1 GTCAG-CTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGAC
* * * *
988529 ATCATCCTCCTTAAGTCTGCTT
65 TTCTTCCCCCTTAAGTCTGCCT
* * * * * * *
988551 GTCAACTTTGACCCT-GTAAAC-TCTGTTCCCCTTAAGTCTGCCT-ACTGGCTTTGA-CCTAAGA
1 GTCAGCTTTGACCCTAG-AGACTTC-CTCCCCCTTAAGTCTGCTTGTC-GGCTTTGACCCT-GGA
** * * *
988612 GACTTTCTTTACCCTT-TGTCTTCCC
62 GAC-TTCTTCCCCCTTAAGTCTGCCT
** * * * * ** * * ** * ** *
988637 GTTGGCTTAGA-CTTAGGAGGCCT-CTCTTTCTTTTA-TCTGCCCGTCAGCTTAAACTC-GGTAG
1 GTCAGCTTTGACCCTA-GAGACTTCCTC-CCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGG-AG
* *** ** * *
988698 ATTTCTT-TATCTTTTGTTTGCCC
63 ACTTCTTCCCCCTTAAGTCTGCCT
** * * * * * * * * *
988721 GTC-GACTAAGACCCTAGAGACTT-TTCCATCTTTTA-TCTACCAT-T-AGCTTTGACCCGGGAT
1 GTCAG-CTTTGACCCTAGAGACTTCCTCC-CCCTTAAGTCT-GCTTGTCGGCTTTGACCCTGGAG
* * *
988781 ACTTCTTCGCCCTTAAGTCTACTT
63 ACTTCTTCCCCCTTAAGTCTGCCT
* * * * * * *
988805 GTCGGC-TTGA-CCTAGGAGAATTCTTCGCCCTTAAGTCTTCTTGTCAGCTTTGACCCTGGAAAC
1 GTCAGCTTTGACCCTA-GAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGAC
* * *
988868 TTCATCCCCTTTAAGTCTACCT
65 TTCTTCCCCCTTAAGTCTGCCT
* * * * ** *
988890 GTCAGCTTTGACCCTAGAAACTTCGT-CCCTTTAAGTTTGCCAGTCGGCTTGGACCCTGGAGACT
1 GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
* * *
988954 TCTTCCTCC-GAAGTTTGCCT
66 TCTTCCCCCTTAAGTCTGCCT
* * * * * * * * *
988974 ATCAACTTTGA-CGTAGAGACATCTTCCCCCCTTAAGTTTGCCTATCGGCTTTGACCTTGGAGAC
1 GTCAGCTTTGACCCTAGAGACTTCCT-CCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGAC
* * *
989038 TTTTTCGCCCTTAAGTCTGCCA
65 TTCTTCCCCCTTAAGTCTGCCT
* * * ** * * * * * *
989060 ATCGGCTTTGACCCTAGAAACTTTGTCCCCCTTAAGTTTGCTTATCGGCTTCGGCCTTGGAGACA
1 GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
* *
989125 TCTTCCCCCTAAAGTCTGTCT
66 TCTTCCCCCTTAAGTCTGCCT
* * * * * *
989146 GTCAGGTTTGACCTTAGAGACTTTCGCACCCTTAAGTCTGCTTGTCGGCTTTCACCCTGGAGACT
1 GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
* **** *
989211 TCGTCCCAAAAAAGTCTGCCA
66 TCTTCCCCCTTAAGTCTGCCT
** * * * * * * *
989232 GTTGGCTTTGACCCGAGAGACTTCTTCCTCCCTTAAGTCTACTTGTCGACTTTGACCTTAGAGAT
1 GTCAGCTTTGACCCTAGAGACTTCCTCC-CCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGAC
* * * *
989297 TTCATCCCCTTTAAGTTTGCCA
65 TTCTTCCCCCTTAAGTCTGCCT
* * * * * **
989319 GTCGGCTTTGACCTTGGAAACTTCTTCCCCCTTAAGTCTGCCAGTCGGCTTTGACCCTGGAGACT
1 GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
*
989384 TCTTCGCCCCTCAAGTCTGCCT
66 TCTTC-CCCCTTAAGTCTGCCT
* * ** * * *
989406 ACGT--GCTTT-AACCTAGAAACTTCGACCCCCTTAAGTCTGCTTGTCAGCTTTGACCTTGAAGA
1 --GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGA
* * *
989468 CTTCGTCCCCTTTAAGTCTACCT
64 CTTCTTCCCCCTTAAGTCTGCCT
* * * * *
989491 GTCAGCTTTGACCCTAGAGTCTTCCTCACCCATAAGTCTACTTGTCGGCTTTGACCTTGGAGACT
1 GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
** * *
989556 TCTTTGCCATTAAGTTTGCCT
66 TCTTCCCCCTTAAGTCTGCCT
* * *
989577 GTCAGCTTTGAGCATTGAGACTT-CTGCCCCCTTAAGTCTGC
1 GTCAGCTTTGACCCTAGAGACTTCCT-CCCCCTTAAGTCTGC
989618 CTATCGACTT
Statistics
Matches: 929, Mismatches: 266, Indels: 90
0.72 0.21 0.07
Matches are distributed among these distances:
82 4 0.00
83 45 0.05
84 75 0.08
85 164 0.18
86 464 0.50
87 173 0.19
88 2 0.00
89 2 0.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (86 bp):
GTCAGCTTTGACCCTAGAGACTTCCTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
TCTTCCCCCTTAAGTCTGCCT
Found at i:989925 original size:43 final size:43
Alignment explanation
Indices: 989878--990154 Score: 223
Period size: 43 Copynumber: 6.4 Consensus size: 43
989868 TGCTTATTAA
* * * **
989878 CTTTGACCCTAGAGACTTCTTCTCCCTAAAGTCTGTTTGTCGG
1 CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGG
* * * * *
989921 CTTTGACCCTGAAGACTTCGTCCCTCTTAAGTCTGCCTATTGG
1 CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGG
** * * * **
989964 CTTTGACTTTGGAGACTTTTTCCCCCCTCAAGTCTGCTTGTCAA
1 CTTTGACCCTGGAGACTTCTT-CCCCCTTAAGTCTGCCTGTCGG
** ** * * * *
990008 CTTTGATGCTAAAGACTTCCTCACCCTTAACTCTGCCTGTCGA
1 CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGG
* * * * *
990051 CATTGACCCTGAAGACTTTTTCGCCCTTAAAT-TCGCCTGTCGG
1 CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCT-GCCTGTCGG
* * * *
990094 CTTTGACCGTGGAGACTTCTGCCCCCTTATGTCTACCTGTCGG
1 CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGG
990137 CTTTGACCCTGGAGACTT
1 CTTTGACCCTGGAGACTT
990155 TATTCCTTTT
Statistics
Matches: 178, Mismatches: 53, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
42 1 0.01
43 147 0.83
44 30 0.17
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.35
Consensus pattern (43 bp):
CTTTGACCCTGGAGACTTCTTCCCCCTTAAGTCTGCCTGTCGG
Found at i:990096 original size:130 final size:130
Alignment explanation
Indices: 989862--990111 Score: 288
Period size: 130 Copynumber: 1.9 Consensus size: 130
989852 TACTACATTG
* * * * * ** * *
989862 CAAGTCTGCTTATTAACTTTGACCCTAGAGACTTCTTCTCCCTAAAGTCTGTTTGTCGGCTTTGA
1 CAAGTCTGCTTATCAACTTTGACCCTAAAGACTTCCTCACCCTAAACTCTGCCTGTCGACATTGA
* **
989927 CCCTGAAGACTTCGTCCCTCTTAAGTCTGCCTATTGGCTTTGACTTTGGAGACTTTTTCCCCCCT
66 CCCTGAAGACTTCGTCCCTCTTAAGTCTGCCTATCGGCTTTGACCGTGGAGACTTTTTCCCCCCT
* ** *
989992 CAAGTCTGCTTGTCAACTTTGATGCTAAAGACTTCCTCACCCTTAACTCTGCCTGTCGACATTGA
1 CAAGTCTGCTTATCAACTTTGACCCTAAAGACTTCCTCACCCTAAACTCTGCCTGTCGACATTGA
** * *
990057 CCCTGAAGACTTTTTCGCC-CTTAAAT-TCGCCTGTCGGCTTTGACCGTGGAGACTT
66 CCCTGAAGACTTCGTC-CCTCTTAAGTCT-GCCTATCGGCTTTGACCGTGGAGACTT
990112 CTGCCCCCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
129 1 0.01
130 95 0.97
131 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (130 bp):
CAAGTCTGCTTATCAACTTTGACCCTAAAGACTTCCTCACCCTAAACTCTGCCTGTCGACATTGA
CCCTGAAGACTTCGTCCCTCTTAAGTCTGCCTATCGGCTTTGACCGTGGAGACTTTTTCCCCCCT
Found at i:990545 original size:44 final size:43
Alignment explanation
Indices: 990495--990708 Score: 199
Period size: 43 Copynumber: 5.0 Consensus size: 43
990485 GCAGGCTTTG
* * * * *
990495 TCCCCCTTAAGTTTACTTGTCGACTTTGA-CCTTGGAGACTTCT
1 TCCCCCTTAAGTCTGCTTATCGGCTTTGAGCC-TAGAGACTTCT
*
990538 TCCCCCCTTAAGTTTGC-TAGTCGGCTTTGAGCCTAGAGACTT-T
1 T-CCCCCTTAAGTCTGCTTA-TCGGCTTTGAGCCTAGAGACTTCT
* * *
990581 CTCACCCC-TAAGTCTGCCTATCGGCTTTGACCCTAGAGACTTGT
1 -TC-CCCCTTAAGTCTGCTTATCGGCTTTGAGCCTAGAGACTTCT
* *
990625 TCGCCCTTAAGTCTGCTTATCGGCTTT-ATCCGTAGAGACTTCT
1 TCCCCCTTAAGTCTGCTTATCGGCTTTGAGCC-TAGAGACTTCT
*
990668 TCCCCCTTAAGTCTG-TCTATCAGCTTTGA-CCTAAGAGACTT
1 TCCCCCTTAAGTCTGCT-TATCGGCTTTGAGCCT-AGAGACTT
990709 TCTTTGTCCT
Statistics
Matches: 147, Mismatches: 12, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
42 8 0.05
43 97 0.66
44 40 0.27
45 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (43 bp):
TCCCCCTTAAGTCTGCTTATCGGCTTTGAGCCTAGAGACTTCT
Found at i:990648 original size:86 final size:84
Alignment explanation
Indices: 990435--990708 Score: 234
Period size: 86 Copynumber: 3.2 Consensus size: 84
990425 CTTATTGCCC
* * * * * * * *
990435 TTGACCCTAGAGACTTTTTCGCCCTAAAGTCTACCTGTCAGCTTTGATCT-GCAGGCTTTGTCCC
1 TTGACCCTAGAGACTTCTTCGCCCTTAAGTCT-GCTATCGGCTTTGACCTAG-AGACTTTCTCCC
* * * * *
990499 CCTTAAGTTTACTTGTCGACT
64 CCTTAAGTCTGCCTATCGGCT
* * * *
990520 TTGACCTTGGAGACTTCTTCCCCCCTTAAGTTTGCTAGTCGGCTTTGAGCCTAGAGACTTTCTCA
1 TTGACCCTAGAGACTTCTT-CGCCCTTAAGTCTGCTA-TCGGCTTTGA-CCTAGAGACTTTCTC-
990585 CCCC-TAAGTCTGCCTATCGGCT
62 CCCCTTAAGTCTGCCTATCGGCT
*
990607 TTGACCCTAGAGACTTGTTCGCCCTTAAGTCTGCTTATCGGCTTT-ATCCGTAGAGAC-TTCTTC
1 TTGACCCTAGAGACTTCTTCGCCCTTAAGTCTGC-TATCGGCTTTGA-CC-TAGAGACTTTC-TC
* *
990670 CCCCTTAAGTCTGTCTATCAGCT
62 CCCCTTAAGTCTGCCTATCGGCT
990693 TTGA-CCTAAGAGACTT
1 TTGACCCT-AGAGACTT
990709 TCTTTGTCCT
Statistics
Matches: 154, Mismatches: 25, Indels: 19
0.78 0.13 0.10
Matches are distributed among these distances:
85 31 0.20
86 77 0.50
87 41 0.27
88 5 0.03
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (84 bp):
TTGACCCTAGAGACTTCTTCGCCCTTAAGTCTGCTATCGGCTTTGACCTAGAGACTTTCTCCCCC
TTAAGTCTGCCTATCGGCT
Found at i:990791 original size:42 final size:42
Alignment explanation
Indices: 990745--990846 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
990735 TTAGACCCAA
* * * * *
990745 GAGACCTCTCTATTTTTTATCTGCCTGTCGACTTAGACTCGG
1 GAGACTTCTCTATCTTTTACCTACCCGTCGACTTAGACTCGG
* * *
990787 GAGACTTCTCTATCTTTTGCCTACCCGTCGGCTTGGACTCGG
1 GAGACTTCTCTATCTTTTACCTACCCGTCGACTTAGACTCGG
*
990829 GAGATTTCTCTATCTTTT
1 GAGACTTCTCTATCTTTT
990847 GCTTGCCCAT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (42 bp):
GAGACTTCTCTATCTTTTACCTACCCGTCGACTTAGACTCGG
Found at i:990868 original size:42 final size:42
Alignment explanation
Indices: 990780--990876 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
990770 TGTCGACTTA
* *
990780 GACTCGGGAGACTTCTCTATCTTTTGCCTACCCGTCGGCTTG
1 GACTCGGGAGACTTCTCTATCTTTTGCCTACCCATCAGCTTG
* * * *
990822 GACTCGGGAGATTTCTCTATCTTTTGCTTGCCCATCAAG-TTT
1 GACTCGGGAGACTTCTCTATCTTTTGCCTACCCATC-AGCTTG
*
990864 GACTCGAGAGACT
1 GACTCGGGAGACT
990877 CTATTACCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.23, T:0.34
Consensus pattern (42 bp):
GACTCGGGAGACTTCTCTATCTTTTGCCTACCCATCAGCTTG
Done.