genome.fa.s1791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1791
Parameters: 2 7 7 80 10 50 1000
Length:  79370

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6096--6150	20	2.8	20	86	5	67	38	12	14	34	1.84
7033--7741	49	15.6	49	72	16	363	29	18	25	25	1.98
7017--7257	101	2.4	101	85	2	315	31	17	26	24	1.97
7219--7687	39	11.0	39	70	17	236	27	20	25	26	1.99
7266--7735	88	5.3	88	90	0	708	28	19	25	25	1.99
7748--7806	31	1.9	31	90	10	95	22	16	28	32	1.96
7839--7954	27	4.0	27	79	16	133	32	13	31	21	1.92
7799--8191	68	6.1	61	80	10	292	36	11	31	20	1.89
7921--8225	34	9.0	34	79	5	287	38	11	31	19	1.87
8121--9177	95	11.2	96	74	11	294	32	15	29	22	1.95
8255--9329	31	34.2	30	76	10	751	31	15	29	23	1.95
8268--9321	95	11.2	90	77	9	804	31	15	29	23	1.95
8254--9329	409	2.6	404	80	10	1140	31	15	29	23	1.95
8315--9262	379	2.5	378	88	2	1391	31	15	28	23	1.95
10593--10634	13	3.5	12	87	6	59	0	2	14	83	0.75
10599--10649	13	3.8	13	87	7	59	1	9	13	74	1.15
10612--10651	14	2.9	14	88	3	55	5	12	10	72	1.26
17832--17870	21	1.9	20	94	5	69	30	12	20	35	1.90
21968--22058	13	6.1	13	72	26	65	36	12	17	34	1.87
21953--22085	32	4.2	32	97	0	239	35	12	18	34	1.87
21983--22077	19	5.6	19	72	27	106	33	12	18	34	1.89
22106--22162	20	2.8	20	100	0	114	40	14	10	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22149--22201	20	2.7	20	100	0	106	26	15	15	43	1.85
22106--22182	40	1.9	39	87	10	111	36	14	11	37	1.82
30869--30921	15	3.6	15	82	5	63	83	15	1	0	0.74
30875--30914	21	1.9	21	89	0	62	82	17	0	0	0.67
30883--30930	14	3.4	14	83	11	62	81	16	0	2	0.79
30869--30931	29	2.2	28	82	2	81	80	14	3	1	0.90
30881--30930	15	3.4	14	76	17	57	82	16	0	2	0.77
32211--32602	28	13.7	28	81	5	374	31	27	15	26	1.96
32211--32602	86	4.6	84	81	6	396	31	27	15	26	1.96
32212--32593	114	3.4	113	80	5	405	31	27	15	25	1.96
33485--33536	19	2.7	20	96	3	97	32	11	19	36	1.87
33622--33750	52	2.5	52	96	0	240	35	18	17	27	1.94
36884--36918	14	2.6	13	95	4	61	60	2	14	22	1.48
42663--42704	21	2.0	21	95	0	75	28	21	9	40	1.84
42748--42774	13	2.1	13	100	0	54	29	14	14	40	1.86
43393--43501	42	2.6	41	73	12	96	41	11	27	19	1.86
43523--43806	61	4.8	58	78	11	274	27	19	27	26	1.99
43527--43808	122	2.4	118	86	7	369	27	18	27	25	1.98
43646--43833	55	3.3	54	79	6	196	25	18	28	28	1.98
43689--43963	155	1.8	148	84	8	374	26	18	29	25	1.98
43849--44078	115	1.9	117	86	7	322	24	19	28	27	1.99
43577--44206	270	2.3	270	92	2	1018	26	19	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43844--44103	61	4.5	56	82	10	287	24	20	28	26	1.99
45174--45266	1	93.0	1	71	0	69	0	3	10	86	0.69
45176--45267	9	10.0	9	82	9	105	0	3	11	84	0.73
45178--45266	37	2.4	35	78	12	90	0	3	11	85	0.71
45176--45266	28	3.3	28	84	7	123	0	3	10	85	0.70
59107--59145	21	1.9	20	94	5	69	30	12	20	35	1.90
63203--63286	19	4.6	19	73	19	72	39	14	15	30	1.87
63241--63299	13	4.1	13	76	23	64	37	13	16	32	1.88
63226--63326	32	3.2	32	95	0	175	36	12	16	33	1.87
63256--63318	19	3.6	19	74	24	75	34	12	17	34	1.88
72112--72159	14	3.4	14	83	11	62	81	16	0	2	0.79
72111--72159	15	3.3	15	80	11	57	81	16	0	2	0.78
72100--72159	27	2.2	27	85	8	77	81	15	1	1	0.85
73439--73830	28	13.7	28	81	5	374	31	26	15	26	1.96
73439--73830	86	4.6	84	82	6	396	31	26	15	26	1.96
73440--73821	114	3.4	113	80	5	414	31	26	15	26	1.96
74716--74767	19	2.7	20	96	3	97	32	11	19	36	1.87
74820--74891	13	5.9	13	80	18	84	33	15	13	37	1.87
74799--74880	34	2.4	34	100	0	164	34	17	12	36	1.87
74900--75028	52	2.5	52	94	0	231	35	17	17	28	1.93

Tables:   1

The End!