genome.fa.s1793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1793
Parameters: 2 7 7 80 10 50 1000
Length:  126524

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10311--10413	27	3.8	28	84	3	129	23	18	33	24	1.96
10401--10519	51	2.3	53	85	7	154	33	11	22	31	1.90
12891--12916	13	2.0	13	100	0	52	38	15	15	30	1.88
12870--12936	33	2.0	33	88	0	98	43	16	14	25	1.86
12956--13023	19	3.9	18	76	23	83	38	14	11	35	1.83
12978--13002	13	1.9	13	100	0	50	32	16	16	36	1.90
12959--13021	32	2.0	32	96	0	117	36	15	12	34	1.86
18395--18446	19	2.7	20	87	6	79	28	13	15	42	1.85
20522--20564	20	2.1	20	82	4	50	9	27	44	18	1.80
23101--23141	15	2.7	15	84	3	55	17	19	17	46	1.85
31552--31577	13	2.0	13	100	0	52	30	15	15	38	1.88
32144--32187	22	2.1	20	87	8	61	38	4	13	43	1.65
32094--32190	50	2.0	49	82	10	117	38	9	13	39	1.77
35086--35135	20	2.6	19	90	3	73	36	16	10	38	1.82
37677--37705	2	14.5	2	100	0	58	48	0	51	0	1.00
38055--38079	1	25.0	1	100	0	50	0	100	0	0	0.00
44968--44995	2	14.0	2	100	0	56	0	0	50	50	1.00
50668--50730	30	2.1	30	93	0	108	33	15	28	22	1.95
53769--53803	2	17.5	2	100	0	70	51	0	0	48	1.00
60809--60835	12	2.2	12	100	0	54	33	33	25	7	1.84
64496--64815	156	2.1	155	80	3	367	41	17	13	26	1.87
64496--64815	155	2.1	156	80	3	369	41	17	13	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65813--65846	2	17.0	2	100	0	68	50	0	0	50	1.00
66437--66495	6	9.8	6	81	7	66	74	3	0	22	0.96
67802--67907	41	2.6	40	83	7	124	51	14	16	16	1.76
68367--68589	76	2.9	76	79	6	229	44	14	13	26	1.83
77489--77838	110	3.2	108	79	6	355	34	18	12	33	1.89
77526--77903	110	3.5	108	79	5	305	33	20	12	33	1.90
78718--78809	12	7.2	12	71	16	60	1	19	0	79	0.80
78718--78806	8	10.5	8	76	17	56	1	20	0	78	0.81
78753--78782	4	7.5	4	100	0	60	0	23	0	76	0.78
78780--78823	22	2.0	22	82	8	54	0	27	0	72	0.85
78775--78827	26	2.1	24	82	6	61	0	30	0	69	0.88
80628--80666	2	20.0	2	94	5	71	51	0	0	48	1.00
84685--84741	2	28.5	2	96	0	105	0	52	0	47	1.00
91879--91908	2	15.0	2	92	0	51	53	0	0	46	1.00
92793--92907	56	2.1	56	83	3	142	45	5	21	27	1.73
96074--96152	32	2.5	32	87	2	115	29	18	13	37	1.90
98496--98855	81	4.5	79	79	7	365	29	25	11	33	1.90
101386--101433	24	2.0	24	100	0	96	29	29	16	25	1.97
103894--103961	34	2.0	34	100	0	136	23	23	23	29	1.99
106441--106522	28	2.9	28	80	7	96	26	17	31	24	1.97
106505--106675	51	3.3	51	81	4	216	32	10	26	30	1.90
106658--106733	27	2.8	28	88	6	102	21	21	34	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106449--106840	212	1.8	212	85	3	556	30	12	27	29	1.93
108917--108942	13	2.0	13	100	0	52	38	15	15	30	1.88
108896--108962	33	2.0	33	88	0	98	43	16	14	25	1.86
108982--109049	19	3.9	18	76	23	83	38	14	11	35	1.83
109004--109028	13	1.9	13	100	0	50	32	16	16	36	1.90
108985--109047	32	2.0	32	96	0	117	36	15	12	34	1.86
109085--109158	21	3.6	21	89	7	107	33	13	16	36	1.88
109883--111487	55	29.0	54	88	6	2185	21	20	29	28	1.98
109909--109998	26	3.3	26	66	19	67	20	18	33	27	1.96
110725--110810	29	3.1	29	65	21	83	18	19	32	29	1.96
112470--112522	1	53.0	1	78	0	52	0	3	7	88	0.61
112470--112523	15	3.7	14	83	14	65	0	3	9	87	0.67
112470--112522	17	3.2	16	89	5	70	0	3	7	88	0.61
125504--125546	9	4.7	9	80	13	52	83	13	0	2	0.74
125501--125559	21	2.6	22	89	7	84	81	15	1	1	0.86
125509--125559	12	4.4	12	82	7	61	84	13	1	0	0.71
125511--125561	18	2.8	17	82	14	57	84	13	1	0	0.71

Tables:   1

The End!