Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1796
Parameters: 2 7 7 80 10 50 1000
Length:  21876

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6032--6090
1
59.0
1
77
0
55
88
6
5
0
0.64
6032--6090
14
4.1
14
85
12
75
88
6
5
0
0.64
6031--6090
25
2.4
25
88
5
86
86
8
5
0
0.69
7059--7327
55
4.9
55
93
1
450
28
29
21
20
1.98
7305--7362
30
1.9
30
100
0
116
27
25
20
25
1.99
7250--7412
85
1.9
85
96
0
299
28
29
21
20
1.98
7335--7881
55
9.9
55
86
6
712
28
29
20
22
1.98
7193--7472
140
2.0
140
95
1
508
27
30
20
21
1.98
7085--7582
250
2.0
250
94
0
872
28
30
20
21
1.98
7059--7881
305
2.6
316
85
8
1093
28
29
20
22
1.98
8692--8773
19
5.1
16
79
20
68
35
12
14
37
1.84
8712--8749
13
2.9
13
100
0
76
36
15
15
31
1.90
8811--8836
13
2.0
13
100
0
52
30
15
15
38
1.88
8791--8857
33
2.0
33
88
0
98
25
14
16
43
1.86
11180--11509
52
6.3
53
71
16
186
30
24
12
33
1.92
11177--11512
104
3.2
103
71
13
297
30
25
11
32
1.92
11497--11573
28
2.8
28
87
0
100
23
33
19
23
1.97
11175--11580
212
1.9
212
87
3
593
28
26
13
31
1.93
11235--11644
107
3.8
107
72
9
262
27
26
14
30
1.95
12760--12811
20
2.5
20
87
3
68
42
9
17
30
1.81
12860--12911
22
2.5
22
87
6
72
30
19
13
36
1.90
17835--17878
16
2.8
16
85
0
61
43
36
18
2
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18350--18379
16
1.9
15
93
6
51
53
3
16
26
1.59
19287--19373
16
5.4
16
83
0
102
36
34
19
9
1.84
19287--19373
32
2.7
32
87
0
129
36
34
19
9
1.84
20731--20771
20
2.0
21
86
13
59
48
7
14
29
1.71
20779--20829
20
2.5
20
100
0
102
35
13
5
45
1.68

Tables:   1

The End!