Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4432388
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 63034 characters in sequence are not A, C, G, or T
File 11 of 27
Found at i:1592859 original size:33 final size:33
Alignment explanation
Indices: 1592817--1592883 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1592807 AAAATTTCCA
***
1592817 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1592850 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1592883 A
1 A
1592884 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1592927 original size:19 final size:18
Alignment explanation
Indices: 1592903--1592970 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1592893 CAGTAGCTAA
1592903 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1592922 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1592937 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1592954 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1592971 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1592943 original size:13 final size:13
Alignment explanation
Indices: 1592925--1592949 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1592915 ACAATACTTA
1592925 TGTATCGATACAT
1 TGTATCGATACAT
1592938 TGTATCGATACA
1 TGTATCGATACA
1592950 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1592947 original size:32 final size:32
Alignment explanation
Indices: 1592906--1592968 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1592896 TAGCTAATTA
*
1592906 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1592938 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1592969 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1593050 original size:21 final size:21
Alignment explanation
Indices: 1593026--1593082 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1593016 CATTTGTAGG
1593026 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
1593047 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
1593068 ATGTATCGATACATT
1 ATGTATCGATACATT
1593083 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:1593776 original size:55 final size:55
Alignment explanation
Indices: 1593692--1594369 Score: 1007
Period size: 55 Copynumber: 12.3 Consensus size: 55
1593682 ATAAATTGTA
* * * * * *
1593692 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
1593747 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
1593802 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
1593857 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGCGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
1593912 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1593967 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1594022 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
1594077 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
1594132 TCCTGCTCTTTGGGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
1594187 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
1594242 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1594297 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
1594352 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
1594370 AAAAAGCGGA
Statistics
Matches: 587, Mismatches: 27, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
54 14 0.02
55 561 0.96
56 12 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:1593987 original size:26 final size:26
Alignment explanation
Indices: 1593958--1594102 Score: 87
Period size: 26 Copynumber: 5.3 Consensus size: 26
1593948 GTGTGGGCTT
1593958 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
1593984 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
*
1594011 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
** * * *
1594039 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
* *
1594066 TTTAAGAGGTGTCCTGCTCTTTGGGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
1594094 TGAAAGGTG
1 TGAAAGGTG
1594103 CCACCAACTT
Statistics
Matches: 85, Mismatches: 24, Indels: 20
0.66 0.19 0.16
Matches are distributed among these distances:
25 6 0.07
26 25 0.29
27 16 0.19
28 16 0.19
29 16 0.19
30 6 0.07
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:1594131 original size:29 final size:29
Alignment explanation
Indices: 1593988--1594131 Score: 108
Period size: 29 Copynumber: 5.2 Consensus size: 29
1593978 GAGGACTGAA
1593988 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
** * * * *
1594017 AGGTGTCCTGC-TCTT-TGAGGAC-TGAA-
1 AGGTG-CCACCAACTTGTGTGGGCTTTAAG
1594043 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
** * *
1594072 AGGTGTCCTGC-TCTT-TG-GGGAC-TGAA-
1 AGGTG-CCACCAACTTGTGTGGG-CTTTAAG
1594098 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1594127 AGGTG
1 AGGTG
1594132 TCCTGCTCTT
Statistics
Matches: 83, Mismatches: 20, Indels: 24
0.65 0.16 0.19
Matches are distributed among these distances:
25 6 0.07
26 16 0.19
27 17 0.20
28 17 0.20
29 21 0.25
30 6 0.07
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.28
Consensus pattern (29 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAG
Found at i:1595393 original size:9 final size:9
Alignment explanation
Indices: 1595335--1595394 Score: 52
Period size: 9 Copynumber: 6.8 Consensus size: 9
1595325 CTTAAGTAGG
1595335 TTTTTTTCT
1 TTTTTTTCT
* *
1595344 TTTCTCTCT
1 TTTTTTTCT
*
1595353 TTTTCTTTGT
1 TTTT-TTTCT
*
1595363 TTTGTTT-T
1 TTTTTTTCT
*
1595371 TTTTGTT-T
1 TTTTTTTCT
1595379 TTTTTTTCT
1 TTTTTTTCT
1595388 TTTTTTT
1 TTTTTTT
1595395 TGAAGAGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
8 13 0.32
9 21 0.52
10 6 0.15
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:1597869 original size:19 final size:18
Alignment explanation
Indices: 1597845--1597912 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1597835 CAGTAGCTAA
1597845 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1597864 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1597879 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1597896 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1597913 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1597885 original size:13 final size:13
Alignment explanation
Indices: 1597867--1597891 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1597857 ACAATACTTA
1597867 TGTATCGATACAT
1 TGTATCGATACAT
1597880 TGTATCGATACA
1 TGTATCGATACA
1597892 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1597889 original size:32 final size:32
Alignment explanation
Indices: 1597848--1597910 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1597838 TAGCTAATTA
*
1597848 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1597880 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1597911 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1597992 original size:21 final size:21
Alignment explanation
Indices: 1597968--1598015 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
1597958 CATTTGTAGG
1597968 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
1597989 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
1598010 ATGTAT
1 ATGTAT
1598016 ACATTTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:1598031 original size:1 final size:1
Alignment explanation
Indices: 1598025--1598071 Score: 67
Period size: 1 Copynumber: 47.0 Consensus size: 1
1598015 TACATTTAAA
***
1598025 TTTTTTTTTTTTTTTTTTTTTCAATTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1598072 CAAACACTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.04, C:0.02, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:1598055 original size:24 final size:24
Alignment explanation
Indices: 1598023--1598069 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
1598013 TATACATTTA
1598023 AATTTTTTTTTTTTTTTTTTTTTC
1 AATTTTTTTTTTTTTTTTTTTTTC
1598047 AATTTTTTTTTTTTTTTTTTTTT
1 AATTTTTTTTTTTTTTTTTTTTT
1598070 TTCAAACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.09, C:0.02, G:0.00, T:0.89
Consensus pattern (24 bp):
AATTTTTTTTTTTTTTTTTTTTTC
Found at i:1598061 original size:26 final size:26
Alignment explanation
Indices: 1598025--1598074 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1598015 TACATTTAAA
1598025 TTTTTTTTTTTTTTTTTTTTTCAATT
1 TTTTTTTTTTTTTTTTTTTTTCAATT
1598051 TTTTTTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTTTTTTCAA
1598075 ACACTTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.08, C:0.04, G:0.00, T:0.88
Consensus pattern (26 bp):
TTTTTTTTTTTTTTTTTTTTTCAATT
Found at i:1598395 original size:51 final size:51
Alignment explanation
Indices: 1598317--1598462 Score: 224
Period size: 50 Copynumber: 2.9 Consensus size: 51
1598307 TTTTAACTAG
* *
1598317 ATGTATCGATACATTG-AGAAATATATCGATACATCTAGGTAAAAAGACAGA
1 ATGTATCGATACATTGAAG-AATGTATCGATACATCTGGGTAAAAAGACAGA
1598368 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGT-AAAAGACAGA
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAAGACAGA
* * *
1598418 ATGCATCGATACATTGAAAAATGTATAGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAA
1598463 TGTGACTTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
50 47 0.53
51 39 0.44
52 2 0.02
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (51 bp):
ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAAGACAGA
Found at i:1599737 original size:28 final size:28
Alignment explanation
Indices: 1599644--1600866 Score: 595
Period size: 28 Copynumber: 42.3 Consensus size: 28
1599634 GGCTTTAAAA
*
1599644 AAAAG-GTGCCACTAACTTGTGTGAGCTTTG
1 AAAAGAGTGCCACTGACTTGTG-G-GC-TTG
1599674 AAAAGAGTTGCCACTGACTTGTGTGGGCTTTG
1 AAAAGAG-TGCCACTGAC-T-TGTGGGC-TTG
*
1599706 -AAAGAGTGCCACTGACTTGTGGGCTTC
1 AAAAGAGTGCCACTGACTTGTGGGCTTG
*
1599733 AAAAGGGTGCCACTGACTTGTGGGCTTCG
1 AAAAGAGTGCCACTGACTTGTGGGCTT-G
* *
1599762 AAATG-GTGCCACTAACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* *
1599790 AAATGA-TGCCACCGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* *
1599818 -AAAGGGTATGCCACTGACTTGTGCGCTTCG
1 AAAAGAG--TGCCACTGACTTGTGGGCTT-G
* *
1599848 -AAAGGGTGCCACTGACTTATGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
*
1599876 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* * *
1599904 -GAACAGTGCCACCGA-TT-T----TTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTG
* * * *
1599925 -GAAGGGTGCCACCGATTTGTGTGGGCTTTG
1 AAAAGAGTGCCACTGA-CT-TGTGGGC-TTG
* * *
1599955 AAAAGAGTTGCCACCGACTTATGTGGACTTT
1 AAAAGAG-TGCCACTGAC-T-TGTGGGCTTG
* * *
1599986 AAAA-AGGTGCCTCTGACTTGTGGACTTC
1 AAAAGA-GTGCCACTGACTTGTGGGCTTG
*
1600014 AAAATGA-TGCCACTAACTTGTGGGCTTTG
1 AAAA-GAGTGCCACTGACTTGTGGGC-TTG
* * * * *
1600043 ACATGA-TCCCACTGTCTTATGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* *
1600071 AAAGGA-TGCCA-TCGACTTGTGGGCTTT
1 AAAAGAGTGCCACT-GACTTGTGGGCTTG
* * * * *
1600098 CAAAGGGTATGCCACTGACTAGTGTGCTTC
1 AAAAGAG--TGCCACTGACTTGTGGGCTTG
*
1600128 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* * *
1600157 -GAAGGGTATGCCATTGACTTGTGGGCTTCG
1 AAAAGAG--TGCCACTGACTTGTGGGCTT-G
*
1600187 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* * *
1600215 -GAAG-GTTTCCACTGATTTGTGTGGGCTTTG
1 AAAAGAG-TGCCACTGA-CT-TGTGGGC-TTG
* * * *
1600245 GAAAG-GTGCCACTAATTTGTGTGGGCTTTA
1 AAAAGAGTGCCACTGA-CT-TGTGGGC-TTG
*
1600275 AAAAGAGTTGCCACCGACTTGTGTGGACTTTG
1 AAAAGAG-TGCCACTGACTTGTG-GG-C-TTG
* * *
1600307 AAAGGAGTTACCACTGACTTGTGGTCTTCG
1 AAAAGAG-TGCCACTGACTTGTGGGCTT-G
* * *
1600337 AAATG-GTGCCACTAACTTGTGGGCTTT
1 AAAAGAGTGCCACTGACTTGTGGGCTTG
* * * *
1600364 AAAATGA-TCCCACTGTCTTATGGGCTTT
1 AAAA-GAGTGCCACTGACTTGTGGGCTTG
*
1600392 AAAAGGGTGCCA-TCGACTTGTGGGCTTTG
1 AAAAGAGTGCCACT-GACTTGTGGGC-TTG
* *
1600421 AAAAG-GTATGCCACTGACTAGTGGGCTTC
1 AAAAGAG--TGCCACTGACTTGTGGGCTTG
* * *
1600450 AAAAGGGTGCCACTGACATATGGGCTTTGG
1 AAAAGAGTGCCACTGACTTGTGGGC-TT-G
* *
1600480 AAAAGTA-TACCACTAACTTGTGGGCTTTG
1 AAAAG-AGTGCCACTGACTTGTGGGC-TTG
* *
1600509 -AAAGGGTGTCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* * *
1600537 -GAAG-GTTTCCACCT-ATTTGTGTGGGCTTTG
1 AAAAGAG-TGCCA-CTGA-CT-TGTGGGC-TTG
* *
1600567 GAAA-AGTGCCACTGATTTGTGTGGGCTTTG
1 AAAAGAGTGCCACTGA-CT-TGTGGGC-TTG
* * *
1600597 GAAAG-GTGCCACTGATTTGTGTGAGCTTT
1 AAAAGAGTGCCACTGACTTGTG-G-GCTTG
*
1600626 AAAACGAGTTGCCAGC-GACTTGTATGGACTTTG
1 AAAA-GAG-TGCCA-CTGACTTG--TGGGC-TTG
* *
1600659 AAAAGAGTTACCACTAACTTGTGGGCTTTG
1 AAAAGAG-TGCCACTGACTTGTGGGC-TTG
* * *
1600689 AAAAGGGTGCCACTAACTTGTGAGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
*
1600718 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* *
1600746 AAAGGA-TGCCACTAACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
*
1600774 AAAAGA-TGCCACTAACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
*
1600802 AAAAGA-TGCCACTAACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGC-TTG
* *
1600830 AGAAG-GATGCCACTGATTTGTGGGCCTTG
1 AAAAGAG-TGCCACTGACTTGTGGG-CTTG
1600859 AAAAGAGT
1 AAAAGAGT
1600867 CGTATTGATG
Statistics
Matches: 976, Mismatches: 133, Indels: 169
0.76 0.10 0.13
Matches are distributed among these distances:
21 16 0.02
23 1 0.00
24 1 0.00
25 1 0.00
26 1 0.00
27 20 0.02
28 454 0.47
29 102 0.10
30 244 0.25
31 34 0.03
32 86 0.09
33 10 0.01
34 6 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (28 bp):
AAAAGAGTGCCACTGACTTGTGGGCTTG
Found at i:1599754 original size:58 final size:56
Alignment explanation
Indices: 1599605--1600861 Score: 789
Period size: 58 Copynumber: 21.6 Consensus size: 56
1599595 GAAGTGGTTA
* * * *
1599605 CTTGAAAAGGGTTGCCACCGACTTGCATGGGCTTTAAAAAAAAGGTGCCACTAACTTGTGTGAG
1 CTTGAAAAGGG-TGCCACTGACTTG--TGGGCTTT---GAAAGGGTGCCACTGACTTGTG-G-G
* *
1599669 CTTTGAAAAGAGTTGCCACTGACTTGTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGG
1 C-TTGAAAAG-GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * *
1599729 CTTCAAAAGGGTGCCACTGACTTGTGGGCTTCGAAATGGTGCCACTAACTTGTGGG
1 CTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * *
1599785 CTTTG-AAATGATGCCACCGACTTGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGCG
1 C-TTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGG--TGCCACTGACTTGTGGG
*
1599843 CTTCG-AAAGGGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
1 CTT-GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * * *
1599899 CTTTGGAACA--GTGCCACCGA--T-T----TTTGGAAGGGTGCCACCGATTTGTGTGGG
1 C-TT-GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA-CT-TGTGGG
* * * * * * *
1599950 CTTTGAAAAGAGTTGCCACCGACTTATGTGGACTTTAAAAAGGTGCCTCTGACTTGTGGA
1 C-TTGAAAAG-GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * * * * * * * *
1600010 CTTCAAAATGATGCCACTAACTTGTGGGCTTTGACATGATCCCACTGTCTTATGGG
1 CTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * *
1600066 CTTTG-AAAGGATGCCA-TCGACTTGTGGGCTTTCAAAGGGTATGCCACTGACTAGTGTG
1 C-TTGAAAAGGGTGCCACT-GACTTGTGGGCTTTGAAAGGG--TGCCACTGACTTGTGGG
* * *
1600124 CTTCAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGGTATGCCATTGACTTGTGGG
1 CTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGG--TGCCACTGACTTGTGGG
* * * *
1600182 CTTCG-AAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGTTTCCACTGATTTGTGTGGG
1 CTT-GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA-CT-TGTGGG
* * * * * *
1600240 CTTTGGAAA-GGTGCCACTAATTTGTGTGGGCTTTAAAAAGAGTTGCCACCGACTTGTGTGG
1 C-TTGAAAAGGGTGCCACTGA-CT-TGTGGGCTTT-GAAAG-GGTGCCACTGACTTGTG-GG
* * * * *
1600301 ACTTTG-AAAGGAGTTACCACTGACTTGTGGTCTTCGAAATGGTGCCACTAACTTGTGGG
1 -C-TTGAAAAGG-G-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * * * * *
1600360 CTTTAAAATGATCCCACTGTCTTATGGGCTTTAAAAGGGTGCCA-TCGACTTGTGGG
1 CTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACT-GACTTGTGGG
* * ** * *
1600416 CTTTGAAAAGGTATGCCACTGACTAGTGGGCTTCAAAAGGGTGCCACTGACATATGGG
1 C-TTGAAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
** * * *
1600474 CTTTGGAAAAGTATACCACTAACTTGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGG
1 C-TT-GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * * * *
1600532 CTTTG-GAAGGTTTCCACCT-ATTTGTGTGGGCTTTGGAAA-AGTGCCACTGATTTGTGTGGG
1 C-TTGAAAAGGGTGCCA-CTGA-CT-TGTGGGCTTT-GAAAGGGTGCCACTGA-CT-TGTGGG
* * * * *
1600592 CTTTGGAAA-GGTGCCACTGATTTGTGTGAGCTTTAAAACGAGTTGCCAGC-GACTTGTATGGA
1 C-TTGAAAAGGGTGCCACTGACTTGTG-G-GCTTTGAAA-G-GGTGCCA-CTGACTTG--TGGG
* * * * *
1600654 CTTTGAAAAGAGTTACCACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGAG
1 C-TTGAAAAG-GGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGG
* *
1600713 CTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGG
1 C-TTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * * *
1600769 CTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGG
1 C-TTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * *
1600825 CTTTGAGAAGGATGCCACTGATTTGTGGGCCTTGAAA
1 C-TTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAA
1600862 AGAGTCGTAT
Statistics
Matches: 958, Mismatches: 163, Indels: 151
0.75 0.13 0.12
Matches are distributed among these distances:
49 17 0.02
50 5 0.01
51 10 0.01
53 10 0.01
54 1 0.00
55 2 0.00
56 266 0.28
57 76 0.08
58 297 0.31
59 49 0.05
60 61 0.06
61 28 0.03
62 79 0.08
63 7 0.01
64 21 0.02
65 25 0.03
66 2 0.00
67 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (56 bp):
CTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
Found at i:1599926 original size:21 final size:21
Alignment explanation
Indices: 1599900--1599942 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
1599890 ACTTGTGGGC
1599900 TTTGGAACAGTGCCACCGATT
1 TTTGGAACAGTGCCACCGATT
**
1599921 TTTGGAAGGGTGCCACCGATT
1 TTTGGAACAGTGCCACCGATT
1599942 T
1 T
1599943 GTGTGGGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (21 bp):
TTTGGAACAGTGCCACCGATT
Found at i:1600405 original size:322 final size:319
Alignment explanation
Indices: 1599632--1600854 Score: 1317
Period size: 322 Copynumber: 3.8 Consensus size: 319
1599622 CCGACTTGCA
* * **
1599632 TGGGCTTTAAAAAAAAGGTGCCACTAACTTGTGTGAGCTTTGAAAAGAGTTGCCACTGACTTGTG
1 TGGGCTTT-AAAAAGAGTTGCCACCGACTTGTGTGAGCTTTG-AAAGAGTTGCCACTGAC-T-TG
* * * * * * * *
1599697 TGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTTC
62 TGGACTTCGAAATGAGTGCCACTAACTTGTGGGCTTTAAAAGGATCCCACTGACTTATGGGCTTT
* * * * * **
1599761 GAAATGGTGCCACTAACTTGTGGGCTTTGAAATGATGCCACCGACTTGTGGGCTTTGAAAGGGTA
127 GAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTAGTGGGCTTCAAAAGGG--
* * * * * *
1599826 TGCCACTGACTTGTGCGC-TTCGAAAGGGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTG
190 TGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTG
* * * * *
1599890 ACTTGTGGGCTTTGGAACAG-TGCCACCGA----T-T----TTTGGAAGGGTGCCACCGATTTGT
255 ACTTGTGGGCTTTGGAA-GGTTTCCACTGATTTGTGTGGGCTTTGGAAAGGTGCCACTGATTTGT
1599945 G
319 G
* * * * *
1599946 TGGGCTTTGAAAAGAGTTGCCACCGACTTATGTG-GACTTT-AAAAAGGTGCCTCTGACTTGTGG
1 TGGGCTTTAAAAAGAGTTGCCACCGACTTGTGTGAG-CTTTGAAAGAGTTGCCACTGACTTGTGG
* * * * *
1600009 ACTTCAAAATGA-TGCCACTAACTTGTGGGCTTTGACATGATCCCACTGTCTTATGGGCTTTGAA
65 ACTTCGAAATGAGTGCCACTAACTTGTGGGCTTTAAAAGGATCCCACTGACTTATGGGCTTTGAA
* * *
1600073 AGGATGCCA-TCGACTTGTGGGCTTTCAAAGGGTATGCCACTGACTAGTGTGCTTCAAAAGGGTG
130 AGGGTGCCACT-GACTTGTGGGCTTTGAAA-GG-ATGCCACTGACTAGTGGGCTTCAAAAGGGTG
** * * *
1600137 CCACTGACTTGTGGGCTTTGGAAGGGTATGCCATTGACTTGTGGGCTTCGAAAGGGTGCCACTGA
192 CCACTGACTTGTGGGCTTTGGAAAAG-ATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGA
*
1600202 CTTGTGGGCTTTGGAAGGTTTCCACTGATTTGTGTGGGCTTTGGAAAGGTGCCACTAATTTGTG
256 CTTGTGGGCTTTGGAAGGTTTCCACTGATTTGTGTGGGCTTTGGAAAGGTGCCACTGATTTGTG
*
1600266 TGGGCTTTAAAAAGAGTTGCCACCGACTTGTGTG-GACTTTGAAAGGAGTTACCACTGACTTGTG
1 TGGGCTTTAAAAAGAGTTGCCACCGACTTGTGTGAG-CTTTGAAA-GAGTTGCCACTGACTTGTG
* * * *
1600330 GTCTTCGAAATG-GTGCCACTAACTTGTGGGCTTTAAAATGATCCCACTGTCTTATGGGCTTTAA
64 GACTTCGAAATGAGTGCCACTAACTTGTGGGCTTTAAAAGGATCCCACTGACTTATGGGCTTTGA
1600394 AAGGGTGCCA-TCGACTTGTGGGCTTTGAAAAGGTATGCCACTGACTAGTGGGCTTCAAAAGGGT
129 AAGGGTGCCACT-GACTTGTGGGCTTTG-AAAGG-ATGCCACTGACTAGTGGGCTTCAAAAGGGT
* * * *
1600458 GCCACTGACATATGGGCTTTGGAAAAGTATACCACTAACTTGTGGGCTTTGAAAGGGTGTCACTG
191 GCCACTGACTTGTGGGCTTTGGAAAAG-ATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTG
*
1600523 ACTTGTGGGCTTTGGAAGGTTTCCACCT-ATTTGTGTGGGCTTTGGAAAAGTGCCACTGATTTGT
255 ACTTGTGGGCTTTGGAAGGTTTCCA-CTGATTTGTGTGGGCTTTGGAAAGGTGCCACTGATTTGT
1600587 G
319 G
** * * *
1600588 TGGGCTTTGGAAAG-G-TGCCACTGATTTGTGTGAGCTTTAAAACGAGTTGCCAGC-GACTTGTA
1 TGGGCTTTAAAAAGAGTTGCCACCGACTTGTGTGAGCTTTGAAA-GAGTTGCCA-CTGACTTG--
* * * * * * * *
1600650 TGGACTTTGAAAAGAGTTACCACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGAGCT
62 TGGACTTCGAAATGAG-TGCCACTAACTTGTGGGCTTT-AAAAGGATCCCACTGACTTATGGGCT
* * *
1600715 TTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAA-G
125 TTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTAGTGGGC-TTCAAAAGG
* * *
1600779 ATGCCACTAACTTGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCAC
189 GTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGA-AAGGGTGCCAC
*
1600843 TGATTTGTGGGC
253 TGACTTGTGGGC
1600855 CTTGAAAAGA
Statistics
Matches: 777, Mismatches: 100, Indels: 56
0.83 0.11 0.06
Matches are distributed among these distances:
308 1 0.00
309 93 0.12
310 12 0.02
311 95 0.12
312 1 0.00
313 24 0.03
314 8 0.01
315 1 0.00
316 1 0.00
320 96 0.12
321 29 0.04
322 295 0.38
323 42 0.05
324 31 0.04
325 47 0.06
326 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (319 bp):
TGGGCTTTAAAAAGAGTTGCCACCGACTTGTGTGAGCTTTGAAAGAGTTGCCACTGACTTGTGGA
CTTCGAAATGAGTGCCACTAACTTGTGGGCTTTAAAAGGATCCCACTGACTTATGGGCTTTGAAA
GGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTAGTGGGCTTCAAAAGGGTGCCAC
TGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGT
GGGCTTTGGAAGGTTTCCACTGATTTGTGTGGGCTTTGGAAAGGTGCCACTGATTTGTG
Found at i:1619326 original size:10 final size:10
Alignment explanation
Indices: 1619313--1619340 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
1619303 TTAATTATTT
1619313 TAAATTAAAA
1 TAAATTAAAA
1619323 TAAATTAAAA
1 TAAATTAAAA
1619333 TAAATTAA
1 TAAATTAA
1619341 TTAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
TAAATTAAAA
Found at i:1620599 original size:6 final size:6
Alignment explanation
Indices: 1620588--1620617 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
1620578 AGGAAGGGGT
*
1620588 GAATAG GAATAG GAATAT GAATAG GAATAG
1 GAATAG GAATAG GAATAG GAATAG GAATAG
1620618 TGATAGTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (6 bp):
GAATAG
Found at i:1624977 original size:20 final size:20
Alignment explanation
Indices: 1624952--1625029 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
1624942 TCTGAGTAAA
1624952 AAAAATGTATCGATACATTG
1 AAAAATGTATCGATACATTG
*
1624972 AAAAATGTATCGATACATTC
1 AAAAATGTATCGATACATTG
* * * *
1624992 ATACATGGATCGATGCATTG
1 AAAAATGTATCGATACATTG
*
1625012 AAAAATGTATCAATACAT
1 AAAAATGTATCGATACAT
1625030 CTGGGTAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (20 bp):
AAAAATGTATCGATACATTG
Found at i:1626208 original size:28 final size:28
Alignment explanation
Indices: 1626023--1626209 Score: 189
Period size: 28 Copynumber: 6.6 Consensus size: 28
1626013 CAGCAACTTG
* * *
1626023 TGTGGGCTTTAGAGAAAGTTGCCACCGATTT
1 TGTGGGCTTT-GA-AAAGGTGCCACTGA-CT
*
1626054 GTGTGGGCTTTG-AAAGGATGCCACTGATT
1 -TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1626083 TGTGGGCTTTGAAAAGAT-CCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1626110 TGTGAGCTTTGAGAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* ** * *
1626138 TCTAAGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1626166 TGTGGGCTATGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1626194 TGTGGGCTTTGAAAAG
1 TGTGGGCTTTGAAAAG
1626210 AGGTCGTATT
Statistics
Matches: 133, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
27 22 0.17
28 82 0.62
29 10 0.08
30 8 0.06
31 1 0.01
32 10 0.08
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:1627514 original size:14 final size:14
Alignment explanation
Indices: 1627495--1627558 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
1627485 GGACCCCTCC
*
1627495 TTTTTTTGTGTTGT
1 TTTTTTTTTGTTGT
*
1627509 TTTTTTTTTGTTTT
1 TTTTTTTTTGTTGT
*
1627523 TGTTTTTTTTCTTGT
1 T-TTTTTTTTGTTGT
* *
1627538 TTTTTATTT-TTAT
1 TTTTTTTTTGTTGT
1627551 TTTTTTTT
1 TTTTTTTT
1627559 GCTTTTTGAG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
13 10 0.24
14 20 0.48
15 12 0.29
ACGTcount: A:0.03, C:0.02, G:0.09, T:0.86
Consensus pattern (14 bp):
TTTTTTTTTGTTGT
Found at i:1627517 original size:17 final size:16
Alignment explanation
Indices: 1627495--1627537 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
1627485 GGACCCCTCC
1627495 TTTTTTTGTGTTGTTT
1 TTTTTTTGTGTTGTTT
*
1627511 TTTTTTTGTTTTTGTTT
1 TTTTTTTG-TGTTGTTT
1627528 TTTTTCTTGT
1 TTTTT-TTGT
1627538 TTTTTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 13 0.54
18 3 0.12
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.84
Consensus pattern (16 bp):
TTTTTTTGTGTTGTTT
Found at i:1627522 original size:6 final size:6
Alignment explanation
Indices: 1627505--1627566 Score: 53
Period size: 6 Copynumber: 10.5 Consensus size: 6
1627495 TTTTTTTGTG
1627505 TTGTTT TT-TTT TTGTTT TTGTTT TT-TTT CTTGTTT TT-TATT TT-TATT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT -TTGTTT TTGT-TT TTGT-TT
1627552 TT-TTT TTGCTTT TTG
1 TTGTTT TTG-TTT TTG
1627567 AGAAGGACAC
Statistics
Matches: 50, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
5 13 0.26
6 28 0.56
7 9 0.18
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.84
Consensus pattern (6 bp):
TTGTTT
Found at i:1627528 original size:29 final size:28
Alignment explanation
Indices: 1627495--1627559 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
1627485 GGACCCCTCC
* *
1627495 TTTTTTTGTGTTGTTTTTT-TTTTGTTTT
1 TTTTTTTGTCTTGTTTTTTATTTT-TATT
*
1627523 TGTTTTTTTTCTTGTTTTTTATTTTTATT
1 T-TTTTTTGTCTTGTTTTTTATTTTTATT
1627552 TTTTTTTG
1 TTTTTTTG
1627560 CTTTTTGAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 7 0.23
29 20 0.65
30 4 0.13
ACGTcount: A:0.03, C:0.02, G:0.11, T:0.85
Consensus pattern (28 bp):
TTTTTTTGTCTTGTTTTTTATTTTTATT
Found at i:1627537 original size:18 final size:17
Alignment explanation
Indices: 1627495--1627565 Score: 76
Period size: 18 Copynumber: 4.1 Consensus size: 17
1627485 GGACCCCTCC
*
1627495 TTTTTTTG-TGTTGTTT
1 TTTTTTTGTTTTTGTTT
1627511 TTTTTTTGTTTTTGTTT
1 TTTTTTTGTTTTTGTTT
1627528 TTTTTCTTGTTTTT-TATT
1 TTTTT-TTGTTTTTGT-TT
1627546 TTTATTTT-TTTTTGCTTT
1 TTT-TTTTGTTTTTG-TTT
1627564 TT
1 TT
1627566 GAGAAGGACA
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
16 8 0.17
17 18 0.38
18 19 0.40
19 3 0.06
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.85
Consensus pattern (17 bp):
TTTTTTTGTTTTTGTTT
Found at i:1627565 original size:25 final size:24
Alignment explanation
Indices: 1627510--1627557 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
1627500 TTGTGTTGTT
*
1627510 TTTTTTTTGTTTTTGTTTTTTTTC
1 TTTTTTTTATTTTTGTTTTTTTTC
*
1627534 TTGTTTTTTATTTTTATTTTTTTT
1 TT-TTTTTTATTTTTGTTTTTTTT
1627558 TGCTTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.04, C:0.02, G:0.06, T:0.88
Consensus pattern (24 bp):
TTTTTTTTATTTTTGTTTTTTTTC
Found at i:1636618 original size:21 final size:21
Alignment explanation
Indices: 1636575--1636647 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
1636565 CACACCCAGA
1636575 TGTATCGATACAT-GCTC--AT
1 TGTATCGATACATGGC-CAAAT
1636594 TGTATCGATACATGGCCAAAT
1 TGTATCGATACATGGCCAAAT
*
1636615 TGTATCGATACATGG-TACAA-
1 TGTATCGATACATGGCCA-AAT
1636635 TGTATCGATACAT
1 TGTATCGATACAT
1636648 TGTATCGATA
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
19 14 0.29
20 16 0.33
21 19 0.39
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATGGCCAAAT
Found at i:1636651 original size:13 final size:13
Alignment explanation
Indices: 1636630--1636660 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1636620 CGATACATGG
*
1636630 TACAATGTATCGA
1 TACATTGTATCGA
1636643 TACATTGTATCGA
1 TACATTGTATCGA
1636656 TACAT
1 TACAT
1636661 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1636655 original size:33 final size:32
Alignment explanation
Indices: 1636613--1636680 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
1636603 ACATGGCCAA
1636613 ATTGTATCGATACATG-GTACAATGTATCGATAC
1 ATTGTATCGATACATGAG-A-AATGTATCGATAC
1636646 ATTGTATCGATACATGAAGAAATGTATCGATAC
1 ATTGTATCGATACATG-AGAAATGTATCGATAC
1636679 AT
1 AT
1636681 AGCATGTAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 31 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (32 bp):
ATTGTATCGATACATGAGAAATGTATCGATAC
Found at i:1641511 original size:20 final size:20
Alignment explanation
Indices: 1641488--1641542 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1641478 AAGTACCCAG
*
1641488 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTATCA
* *
1641508 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTATCA
*
1641528 ATGTATTGATACATT
1 ATGTATCGATACATT
1641543 CTGTCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTATCA
Found at i:1643564 original size:79 final size:79
Alignment explanation
Indices: 1643470--1643691 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 79
1643460 ACAACGGGGC
1643470 TGGAGTATCCCCGATTATGGAAAATTTG-TATTTTGGAAATAAAATCGGGGTTGGAGTATCCCC-
1 TGGAGTATCCCCGATTATGGAAAA-TTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCG
*
1643533 TCGAAAATAA-GGGCGT
65 T-GAAAATAACGGG-AT
* * * * ***
1643549 TGGAGTATCCCCGATTGTGGAAAATCGATACTTTAGAAATAAGGCCGGGGTTGGAGTATCCCCGT
1 TGGAGTATCCCCGATTATGGAAAATTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCGT
1643614 GAAAATAACGGGAT
66 GAAAATAACGGGAT
* * * * * *
1643628 TGAAGTATTCCCGATTAT-GAGAAATTGATGTTTTGGAAATAAAATCAGAGTTTGAGTATCCCCG
1 TGGAGTATCCCCGATTATGGA-AAATTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCG
1643692 ATTATGAAAA
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
78 4 0.03
79 110 0.93
80 4 0.03
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
TGGAGTATCCCCGATTATGGAAAATTGATATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCGT
GAAAATAACGGGAT
Found at i:1643692 original size:51 final size:51
Alignment explanation
Indices: 1643631--1643741 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 51
1643621 ACGGGATTGA
* * * * *
1643631 AGTATTCCCGATTATGAGAAATTGATGTTTTGGAAATAAAATCAGAGTTTG
1 AGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCAGAGTTAG
* *
1643682 AGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAATCAGGGTTAG
1 AGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCAGAGTTAG
1643733 AGTATCCCC
1 AGTATCCCC
1643742 TCGGAAAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (51 bp):
AGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCAGAGTTAG
Found at i:1643869 original size:108 final size:107
Alignment explanation
Indices: 1643681--1643876 Score: 259
Period size: 108 Copynumber: 1.8 Consensus size: 107
1643671 ATCAGAGTTT
* ** *
1643681 GAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCGG
1 GAGTACCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCAGGGTTAGAGTATCCCCTCGG
1643746 AAAAAACGGGATTGGAGTATCCCTAATGACATAACGGGGTTG
66 AAAAAACGGGATTGGAGTATCCCTAATGACATAACGGGGTTG
* * * * *
1643788 GAGTACCCCCGATTATGAAAAAATTAATATTTTAGATATAAAGCCGGGGTTGGAGTATCTCCTC-
1 GAGTACCCCCGATTATG-AAAAATTAATATTTTAGAAATAAAACCAGGGTTAGAGTATCCCCTCG
* * *
1643852 GAAAATAATGGGGTTGGAGTTTCCC
65 GAAAA-AACGGGATTGGAGTATCCC
1643877 CAATTGTGAA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
107 21 0.28
108 54 0.72
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (107 bp):
GAGTACCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCAGGGTTAGAGTATCCCCTCGG
AAAAAACGGGATTGGAGTATCCCTAATGACATAACGGGGTTG
Found at i:1643954 original size:238 final size:237
Alignment explanation
Indices: 1643539--1643979 Score: 514
Period size: 238 Copynumber: 1.9 Consensus size: 237
1643529 CCCCTCGAAA
* * * * *
1643539 ATAAGGGCGTTGGAGTATCCCCGATTGTGGAAAATCGATACTTTAGAAATAAGGCCGGGGTTGGA
1 ATAAGGGCGTTGGAGTACCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCGGGGTTGGA
* *
1643604 GTATCCCCGTGAAAATAACGGGATTGAAGTATTCCCGATTATGAGAAATTGATGTTTTGGAAATA
66 GTATCCCCGTGAAAATAACGGGATTGAAGTATTCCCAATTATGAGAAATTGATGTTTTCGAAATA
* * * * *
1643669 AAATCAGAGTTTGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAATCAGG-GTTAG
131 AAATCAGAGTTGGAGTATCCCCGATTACGAAAAATCGATACTTTAGAAATAAAA-CAGGAGTTAG
1643733 AGTATCCCCTCGGAAAAAACGGGATTGGAGTATCCCTAATGAC
195 AGTATCCCCTCGGAAAAAACGGGATTGGAGTATCCCTAATGAC
* * *
1643776 ATAACGGG-GTTGGAGTACCCCCGATTATGAAAAAATTAATATTTTAGATATAAAGCCGGGGTTG
1 ATAA-GGGCGTTGGAGTACCCCCGATTATG-AAAAATCAATACTTTAGAAATAAAGCCGGGGTTG
* * * * *
1643840 GAGTATCTCC-TCGAAAATAATGGGGTTGGAGT-TTCCCCAATTGTGA-AAAGTTGATGTTTTCG
64 GAGTATCCCCGT-GAAAATAACGGGATTGAAGTATT-CCCAATTATGAGAAA-TTGATGTTTTCG
* * * * * * ** * *
1643902 CAATACAATCGGAGTTGGAGTATCCTCGGTTGCGGTAAATCGATGCTTTAGAAATAAAACCGGAG
126 AAATAAAATCAGAGTTGGAGTATCCCCGATTACGAAAAATCGATACTTTAGAAATAAAACAGGAG
*
1643967 TTGGAGTATCCCC
191 TTAGAGTATCCCC
1643980 AATTAAGAAA
Statistics
Matches: 167, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
237 32 0.19
238 135 0.81
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (237 bp):
ATAAGGGCGTTGGAGTACCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCGGGGTTGGA
GTATCCCCGTGAAAATAACGGGATTGAAGTATTCCCAATTATGAGAAATTGATGTTTTCGAAATA
AAATCAGAGTTGGAGTATCCCCGATTACGAAAAATCGATACTTTAGAAATAAAACAGGAGTTAGA
GTATCCCCTCGGAAAAAACGGGATTGGAGTATCCCTAATGAC
Found at i:1646423 original size:50 final size:50
Alignment explanation
Indices: 1646350--1646444 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
1646340 TACATTGTAA
* * * *
1646350 AATGTATGGATACATCTGGGTAAATCCAGAATGTATCGATACAATTTTGC
1 AATGTATCGATAAATCTAGGTAAACCCAGAATGTATCGATACAATTTTGC
*
1646400 AATGTATCGATAAATCTAGGTAAACCCAGAATGTTTCGATACAAT
1 AATGTATCGATAAATCTAGGTAAACCCAGAATGTATCGATACAAT
1646445 GTATCGATAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (50 bp):
AATGTATCGATAAATCTAGGTAAACCCAGAATGTATCGATACAATTTTGC
Found at i:1646476 original size:13 final size:13
Alignment explanation
Indices: 1646429--1646458 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1646419 GTAAACCCAG
*
1646429 AATGTTTCGATAC
1 AATGTATCGATAC
1646442 AATGTATCGATAC
1 AATGTATCGATAC
1646455 AATG
1 AATG
1646459 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1647091 original size:40 final size:40
Alignment explanation
Indices: 1647045--1647147 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 40
1647035 TATCCCACTT
* *
1647045 TTGAGGACGAA-GAAAAAGAGAATGAAATGGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAGAGAAGGAAA-GGGTCTTGCTCC
* * * *
1647085 TTGAGGACAAAGGAAGAAAGAAAAGGAAAGTGTCTTTCTCT
1 TTGAGGACAAAGGAA-AAAGAGAAGGAAAGGGTCTTGCTCC
1647126 TTGAGGACAAAGTGAAAAAGAG
1 TTGAGGACAAAG-GAAAAAGAG
1647148 TACGTCCTGC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
40 10 0.19
41 29 0.55
42 14 0.26
ACGTcount: A:0.42, C:0.10, G:0.29, T:0.19
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAGAGAAGGAAAGGGTCTTGCTCC
Found at i:1647130 original size:41 final size:41
Alignment explanation
Indices: 1647044--1647454 Score: 153
Period size: 45 Copynumber: 9.6 Consensus size: 41
1647034 GTATCCCACT
* * *
1647044 TTTGAGGACGAA-GAAAAAGAGAATGAAATGGGTCTTGCTC
1 TTTGAGGACAAAGGAAAAAGAAAAGGAAATGGGTCTTGCTC
* * *
1647084 CTTGAGGACAAAGGAAGAAAGAAAAGGAAA-GTGTCTTTCTC
1 TTTGAGGACAAAGGAA-AAAGAAAAGGAAATGGGTCTTGCTC
** * *
1647125 TTTGAGGACAAAGTGAAAAAG---A-G---TACGTCCTGCTT
1 TTTGAGGACAAAG-GAAAAAGAAAAGGAAATGGGTCTTGCTC
* * *
1647160 TTTGAGGACAAAGGAAAAAAAAGGAAAACGAAATGCGTCCTGCTC
1 TTTGAGGACAAAGG---AAAAA-GAAAAGGAAATGGGTCTTGCTC
* * ** *
1647205 TTTGAGGACAAAAGAAAAAGGAAAA-TAAAGTGCATCCTGCTC
1 TTTGAGGACAAAGGAAAAA-GAAAAGGAAA-TGGGTCTTGCTC
* * ** *
1647247 TTTGAGGACAAAAGGGAAAAGAAGAAAATGAAGTACGTCCTGCTC
1 TTTGAGGAC-AAA-GG-AAA-AAGAAAAGGAAATGGGTCTTGCTC
* * * *
1647292 TTTGAGGACAAAAAGGGGAAAATAGGAAAATGG-CACGTGTCCTGCTC
1 TTTGAGGAC--AAA--GGAAAA-A-GAAAA-GGAAATGGGTCTTGCTC
* * * *
1647339 TTTGAGGACAAAGGAAAAGAGGAAAA-TAAAGTGCGTCCTACTC
1 TTTGAGGACAAAGGAAAA-A-GAAAAGGAAA-TGGGTCTTGCTC
* * * * *
1647382 TTTGAGGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCCTGCTC
1 TTTGAGGA-CAAA-GG-AAA-AAGAAAAGGAAATGGGTCTTGCTC
*
1647427 TTTGAGGATAAAGGAGAAAAGGAAAAGG
1 TTTGAGGACAAAGGA-AAAA-GAAAAGG
1647455 CCTCCTTCTC
Statistics
Matches: 294, Mismatches: 42, Indels: 67
0.73 0.10 0.17
Matches are distributed among these distances:
34 1 0.00
35 19 0.06
37 6 0.02
38 2 0.01
40 10 0.03
41 32 0.11
42 50 0.17
43 42 0.14
44 7 0.02
45 78 0.27
46 19 0.06
47 27 0.09
48 1 0.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.19
Consensus pattern (41 bp):
TTTGAGGACAAAGGAAAAAGAAAAGGAAATGGGTCTTGCTC
Found at i:1647402 original size:135 final size:132
Alignment explanation
Indices: 1647146--1647446 Score: 404
Period size: 135 Copynumber: 2.3 Consensus size: 132
1647136 AGTGAAAAAG
* *
1647146 AGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAG
1 AGTACGTCCTGCTCTTTGAGGACAAAGGAAAAAAAAGGAAAACGAAACGCGTCCTGCTCTTTGAG
*
1647211 GACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGAAAAT
66 GACAAAAGAAAAAGGAAAATAAAGTGCATCCTACTCTTTGAGGACAAAAGGGAAAAGAAGAAAAT
1647276 GA
131 GA
** * * ** *
1647278 AGTACGTCCTGCTCTTTGAGGACAAAAAGGGGAAAATAGGAAAATGGCACGTGTCCTGCTCTTTG
1 AGTACGTCCTGCTCTTTGAGGAC--AAAGGAAAAAAAAGGAAAACGAAACGCGTCCTGCTCTTTG
* * * *
1647343 AGGACAAAGGAAAAGAGGAAAATAAAGTGCGTCCTACTCTTTGAGGATAAAAGGGAAAAGAAGGA
64 AGGACAAAAGAAAA-AGGAAAATAAAGTGCATCCTACTCTTTGAGGACAAAAGGGAAAAGAAGAA
1647408 AATGA
128 AATGA
* ** * *
1647413 AATGTGTCCTGCTCTTTGAGGATAAAGGAGAAAA
1 AGTACGTCCTGCTCTTTGAGGACAAAGGAAAAAA
1647447 GGAAAAGGCC
Statistics
Matches: 147, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
132 22 0.15
133 10 0.07
134 45 0.31
135 70 0.48
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (132 bp):
AGTACGTCCTGCTCTTTGAGGACAAAGGAAAAAAAAGGAAAACGAAACGCGTCCTGCTCTTTGAG
GACAAAAGAAAAAGGAAAATAAAGTGCATCCTACTCTTTGAGGACAAAAGGGAAAAGAAGAAAAT
GA
Found at i:1647434 original size:88 final size:87
Alignment explanation
Indices: 1647151--1647452 Score: 321
Period size: 88 Copynumber: 3.4 Consensus size: 87
1647141 AAAAGAGTAC
* * * *
1647151 GTCCTGCTTTTTGAGGACAAAGGAAAAAAAAGGAAAACGAAA-TGCGTCCTGCTCTTTGAGGACA
1 GTCCTGCTCTTTGAGGACAAAGG--AAAAGAGGAAAA-TAAAGTGCGTCCTGCTCTTTGAGGAAA
1647215 AAA--G-AAAAAGGAAAAT-AAAGT
63 AAAGGGAAAAAAGGAAAATGAAAGT
* * *
1647236 GCATCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGAAAATGAAGTACGTCCTGCTCTTTGAGGAC
1 G--TCCTGCTCTTTGAGGAC-AAA-GGAAAAGAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGA-
* * *
1647301 AAAAAGGGGAAAATAGGAAAATGGCACGT
61 AAAAA-GGGAAAAAAGGAAAAT-GAAAGT
* *
1647330 GTCCTGCTCTTTGAGGACAAAGGAAAAGAGGAAAATAAAGTGCGTCCTACTCTTTGAGGATAAAA
1 GTCCTGCTCTTTGAGGACAAAGGAAAAGAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGAAAAAA
1647395 GGGAAAAGAAGG-AAATGAAATGT
66 GGGAAAA-AAGGAAAATGAAA-GT
*
1647418 GTCCTGCTCTTTGAGGATAAAGGAGAAA-AGGAAAA
1 GTCCTGCTCTTTGAGGACAAAGGA-AAAGAGGAAAA
1647453 GGCCTCCTTC
Statistics
Matches: 183, Mismatches: 19, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
85 1 0.01
86 2 0.01
87 47 0.26
88 50 0.27
89 12 0.07
90 35 0.19
91 4 0.02
92 28 0.15
94 4 0.02
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.19
Consensus pattern (87 bp):
GTCCTGCTCTTTGAGGACAAAGGAAAAGAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGAAAAAA
GGGAAAAAAGGAAAATGAAAGT
Found at i:1647447 original size:45 final size:45
Alignment explanation
Indices: 1647150--1647447 Score: 285
Period size: 45 Copynumber: 6.7 Consensus size: 45
1647140 AAAAAGAGTA
* * * * *
1647150 CGTCCTGCTTTTTGAGGACAAAGGAAAAAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGAAAAAGGGAAAAGAAGGAAAATGAAATG
1647195 CGTCCTGCTCTTTGAGGACAAAA--G-AAA-AAGGAAAAT-AAAGTG
1 CGTCCTGCTCTTTGAGGA-AAAAGGGAAAAGAAGGAAAATGAAA-TG
* * *
1647237 CATCCTGCTCTTTGAGGACAAAAGGGAAAAGAA-GAAAATGAAGTA
1 CGTCCTGCTCTTTGAGGA-AAAAGGGAAAAGAAGGAAAATGAAATG
* ** *
1647282 CGTCCTGCTCTTTGAGGACAAAAAGGGGAAAA-TAGGAAAATGGCACG
1 CGTCCTGCTCTTTGAGG--AAAAA-GGGAAAAGAAGGAAAATGAAATG
* *
1647329 TGTCCTGCTCTTTGAGGACAAA-GGAAAAG-AGGAAAAT-AAAGTG
1 CGTCCTGCTCTTTGAGGAAAAAGGGAAAAGAAGGAAAATGAAA-TG
*
1647372 CGTCCTACTCTTTGAGGATAAAAGGGAAAAGAAGG-AAATGAAATG
1 CGTCCTGCTCTTTGAGGA-AAAAGGGAAAAGAAGGAAAATGAAATG
* *
1647417 TGTCCTGCTCTTTGAGGATAAAGGAGAAAAG
1 CGTCCTGCTCTTTGAGGAAAAAGG-GAAAAG
1647448 GAAAAGGCCT
Statistics
Matches: 210, Mismatches: 25, Indels: 36
0.77 0.09 0.13
Matches are distributed among these distances:
41 3 0.01
42 33 0.16
43 34 0.16
44 9 0.04
45 82 0.39
46 18 0.09
47 31 0.15
ACGTcount: A:0.41, C:0.13, G:0.27, T:0.19
Consensus pattern (45 bp):
CGTCCTGCTCTTTGAGGAAAAAGGGAAAAGAAGGAAAATGAAATG
Found at i:1647633 original size:61 final size:61
Alignment explanation
Indices: 1647443--1647991 Score: 430
Period size: 61 Copynumber: 9.1 Consensus size: 61
1647433 GATAAAGGAG
* * * * *** **
1647443 AAAAGGAAAAGGCCTCCTTCTCTTTGAGGATTAA-AAAGTGCCACCAGCCCATGTGGGTTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGA-CAAGAAAGTGCCACCAACTTGTGTGGGCCTT
* * * * * * * *
1647504 GAAAGGAAAAGGCATCCAGCTCTTTCAGGGCTACAA-AAAGGTGCCACCAGCTCGTGCGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGA-GG--ACAAGAAA-GTGCCACCAACTTGTGTGGGCCTT
* * *
1647568 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACAAGGAGGTGCCACCAACTTGTGTGGGCCTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCCTT
* * * * * * *
1647629 AAAA-GAAACATGCATCCTGCTCTTGGAGAACTAGAAGGTGCCAACAACTTGTGTGGG-CTT
1 AAAAGGAAA-AGGCGTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCCTT
* * * *
1647689 ----TG-AAAGGCGTCCTGCTCTTTGAGGACTAAAAAAGTGCCACCGACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGAC-AAGAAAGTGCCACCAACTTGTGTGGGCCTT
* * *
1647746 AAAAGGAAAAGGCGTCCTGCTCCTTGAGGAC-TGAAAAGTGCCACCAACTGGTGTGGG-CTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACAAG-AAAGTGCCACCAACTTGTGTGGGCCTT
* ** * ** * *
1647806 ----TG-AAAGGCGTCCCACTGTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCCTT
* * ** *
1647862 AAAAAGAAAAGGCGTCTTGCTCTTTGAGGACTTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACAAG-AAAGTGCCACCAACTTGTGTGGGCCTT
* * *
1647924 AAAAGGAAAAAGCGTCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTGT-GGCCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACAAG-AAAGTGCCACCAACTTGTGTGGGCC-TT
1647986 AAAAGG
1 AAAAGG
1647992 CGTCCTACTC
Statistics
Matches: 396, Mismatches: 68, Indels: 47
0.77 0.13 0.09
Matches are distributed among these distances:
55 59 0.15
56 27 0.07
57 3 0.01
60 10 0.03
61 137 0.35
62 110 0.28
63 7 0.02
64 43 0.11
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (61 bp):
AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCCTT
Found at i:1647764 original size:117 final size:116
Alignment explanation
Indices: 1647450--1647991 Score: 491
Period size: 117 Copynumber: 4.5 Consensus size: 116
1647440 GAGAAAAGGA
* * * * *** * *
1647450 AAAGGCCTCCTTCTCTTTGAGGA-TTAAAAAGTGCCACCAGCCCATGTGGGTTTTGAAAGGAAAA
1 AAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * * * * * *
1647514 GGCATCCAGCTCTTTCAGGGCTACAAAAAGGTGCCACCAGCTCGTGCGGGCTTTAAAAGG
66 GGCGTCCTGCTC-TTGAGGACT--GAAAA-GTGCCACCAACTTGTGTGGGCTTT-----G
** * *
1647574 AAAAGGCGTCCTACTCTTTGAGGAC-AAGGAGGTGCCACCAACTTGTGTGGGCCTTAAAA-GAAA
1 -AAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
* * * * *
1647637 CATGCATCCTGCTCTTGGAGAACT-AGAAGGTGCCAACAACTTGTGTGGGCTTTG
65 -AGGCGTCCTGCTCTT-GAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTG
* *
1647691 AAAGGCGTCCTGCTCTTTGAGGACTAAAAAAGTGCCACCGACTTGTGTGGGCTTTAAAAGGAAAA
1 AAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
*
1647756 GGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTG
66 GGCGTCCTGCT-CTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG
* * ** *
1647808 AAAGGCGTCCCACTGTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAA
1 AAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
*
1647872 GGCGTCTTGCTCTTTGAGGACTTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
66 GGCGTCCTGCTC-TTGAGGAC-TGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G
* * * * *
1647930 AAAAAGCGTCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGG
1 -AAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1647992 CGTCCTACTC
Statistics
Matches: 349, Mismatches: 51, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
115 1 0.00
116 72 0.21
117 126 0.36
118 8 0.02
122 22 0.06
123 28 0.08
124 33 0.09
125 59 0.17
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (116 bp):
AAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
GGCGTCCTGCTCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG
Found at i:1647875 original size:178 final size:175
Alignment explanation
Indices: 1647494--1648012 Score: 548
Period size: 178 Copynumber: 2.9 Consensus size: 175
1647484 CACCAGCCCA
* * * * * *
1647494 TGTGGGTTTTGAAAGGAAAAGGCATCCAGCTCTTTCAGGGCTACAAAAAGGTGCCACCAGCTCGT
1 TGTGGGCTTT-AAA-GAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAAA-GTGCCACCA-CTTGT
* * *
1647559 GCGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAGGAC--AAGGAGGTGCCACCAACTTGTGT
61 GTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAA--AAGTGCCACCAACTTGTGT
* * * * **
1647622 GGGCCTTAAAAGAAACAT-GCATCCTGCTCTTGGAGAACTAGAAGGTGCCAACAACTTG
124 GGGCTTTAAAAG--GCGTCCCA--CTG-T-TT-GAGAACTAGAAAATGCCAACAACTTG
1647680 TGTGGGCTTT---G-AAAGGCGTCCTGCTCTTTGAGGACTAAAAAAGTGCCACCGACTTGTGTGG
1 TGTGGGCTTTAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAAGTGCCACC-ACTTGTGTGG
* *
1647741 GCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTT
65 GCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT
* * * *
1647806 TGAAAGGCGTCCCACTGTTTGAGGACTGGAAAATGCCACCAACTTG
130 TAAAAGGCGTCCCACTGTTTGAGAACTAGAAAATGCCAACAACTTG
* **
1647852 TGTGGGCTTTAAAAAGAAAAGGCGTCTTGCTCTTTGAGGACTTGAAAAGTGCCACCAACTTGTGT
1 TGTGGGCTTT--AAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAAGTGCCACC-ACTTGTGT
* * *
1647917 GGGCTTTAAAAGGAAAAAGCGTCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGC
63 GGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGG
* * *
1647982 CTTTAAAAGGCGTCCTACTCTTTGAGTACTA
127 CTTTAAAAGGCGTCCCACTGTTTGAGAACTA
1648013 AAAGGCAAAA
Statistics
Matches: 287, Mismatches: 35, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
172 31 0.11
173 2 0.01
174 1 0.00
175 3 0.01
176 2 0.01
177 3 0.01
178 156 0.54
179 55 0.19
180 24 0.08
181 1 0.00
186 9 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (175 bp):
TGTGGGCTTTAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAAGTGCCACCACTTGTGTGGG
CTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
AAAAGGCGTCCCACTGTTTGAGAACTAGAAAATGCCAACAACTTG
Found at i:1647939 original size:62 final size:62
Alignment explanation
Indices: 1647823--1647991 Score: 268
Period size: 62 Copynumber: 2.7 Consensus size: 62
1647813 CGTCCCACTG
* * * *
1647823 TTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTCTTGCTC
1 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCGTCCTGCTC
* *
1647884 TTTGAGGACTTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCGTCCTGCTT
1 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCGTCCTGCTC
*
1647946 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGG
1 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1647992 CGTCCTACTC
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
61 15 0.15
62 85 0.85
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (62 bp):
TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCGTCCTGCTC
Found at i:1648115 original size:61 final size:60
Alignment explanation
Indices: 1648019--1648441 Score: 418
Period size: 61 Copynumber: 7.1 Consensus size: 60
1648009 ACTAAAAGGC
* * ** **
1648019 AAAAGGAGAGAGCGTCCTGCTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAG-GCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
** * ** *
1648080 AAAAGGAGAAGGCACCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGA-AAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
1648141 AAAAGGTGAAGGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGG-AAAGGCGTCCTACTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
1648202 -----GAAAGGCGTGCTACTCTTTGAGGACTAAAAAAGTGCCACCGACTTGTATGGGTTTT
1 AAAAGGAAAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1648258 AAAAGGAAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGCATT
1 AAAAGG-AAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1648319 -----GAAGGGCGTCCTACTCTTTAAGGACTGAAAAATGCCACCAACTTGTATGGGCTTT
1 AAAAGGAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* **
1648374 AAAAGGAAAAGGCATCCTGTTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGG-AAAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
1648436 AAAAGG
1 AAAAGG
1648442 CATCCTGCTC
Statistics
Matches: 296, Mismatches: 48, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
55 68 0.23
56 25 0.08
57 1 0.00
60 1 0.00
61 144 0.49
62 57 0.19
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (60 bp):
AAAAGGAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:1648289 original size:117 final size:118
Alignment explanation
Indices: 1648030--1648460 Score: 512
Period size: 117 Copynumber: 3.6 Consensus size: 118
1648020 AAAGGAGAGA
** ** *
1648030 GCGTCCTGCTCTTTGAAAACT-GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* **** * * **
1648094 CCCTACTCTTTGAGGA-TTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGAAG
60 TCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
* *
1648152 GCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTGCTAC
1 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTAC
* *
1648216 TCTTTGAGGACTAAAAAAGTGCCACCGACTTGTATGGGTTTTAAAAGGAAAAG
66 TCTTTGAGGACTAAAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
* * * *
1648269 GCGTCCTGCTCCTTGAGGACT-GAAAAGTGCCACCAACTAGTGTGGGCATTGAAGGGCGTCCTAC
1 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTAC
* *
1648333 TCTTTAAGGACTGAAAAA-TGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
66 TCTTTGAGGACTAAAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
* * * * *
1648385 GCATCCTGTTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
1 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTAC
1648450 TCTTTGAGGAC
66 TCTTTGAGGAC
1648461 CAAAGGGCGA
Statistics
Matches: 268, Mismatches: 37, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
116 70 0.26
117 153 0.57
122 44 0.16
123 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTAC
TCTTTGAGGACTAAAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
Found at i:1648355 original size:55 final size:55
Alignment explanation
Indices: 1648149--1648460 Score: 266
Period size: 55 Copynumber: 5.4 Consensus size: 55
1648139 TTAAAAGGTG
* ** *
1648149 AAGGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTGA
1 AAGGCGTCCTACTCTTTGAGGACTGA-AAAATGCCACCAACTTGTATGGGCTTTGA
* * * *
1648204 AAGGCGTGCTACTCTTTGAGGACTAAAAAAGTGCCACCGACTTGTATGGGTTTTAAAAGGAA
1 AAGGCGTCCTACTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTATGGGCTTT-----G-A
* * * * * *
1648266 AAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGCATTGA
1 AAGGCGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTATGGGCTTTGA
* *
1648321 AGGGCGTCCTACTCTTTAAGGACTGAAAAATGCCACCAACTTGTATGGGCTTTAAAAGGAA
1 AAGGCGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTATGGGCTTT-----G-A
* ** * * *
1648382 AAGGCATCCTGTTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAA
1 AAGGCGTCCTACTCTTTGAGGACT-GAAAAATGCCACCAACTTGTATGGGCTTTGA
* *
1648438 AAGGCATCCTGCTCTTTGAGGAC
1 AAGGCGTCCTACTCTTTGAGGAC
1648461 CAAAGGGCGA
Statistics
Matches: 208, Mismatches: 34, Indels: 29
0.77 0.13 0.11
Matches are distributed among these distances:
55 70 0.34
56 45 0.22
60 1 0.00
61 39 0.19
62 53 0.25
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (55 bp):
AAGGCGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTATGGGCTTTGA
Found at i:1648400 original size:178 final size:175
Alignment explanation
Indices: 1648054--1648441 Score: 442
Period size: 178 Copynumber: 2.2 Consensus size: 175
1648044 GAAAACTGGG
* * * **
1648054 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCACCCTACTCTTTGAGGATTGGGAAGT
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCACCCTACTCCTTGAGGACTGAAAAGT
* * * * **
1648119 GCCACCAACTCGTGTGGGCTTTAAAAGGTGAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
66 GCCACCAACTAGTGTGGGCATTAAAA-G-G-AGGCGTCCTACTCTTTAAGGACTAGAAAATGCCA
* * *
1648184 CCAACTTGTGTGGGCTTTGAAAGGCGTGCTACTCTTTGAGGACTAAAA
128 CCAACTTGTATGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAA
* * * ** *
1648232 AAGTGCCACCGACTTGTATGGGTTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGT
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCACCCTACTCCTTGAGGACTGAAAAGT
*
1648297 GCCACCAACTAGTGTGGGCATT-GAA-G-GGCGTCCTACTCTTTAAGGACT-GAAAAATGCCACC
66 GCCACCAACTAGTGTGGGCATTAAAAGGAGGCGTCCTACTCTTTAAGGACTAG-AAAATGCCACC
** *
1648358 AACTTGTATGGGCTTTAAAAGGAAAAGGCATCCTGTTCTTTGAGGACTAGAA
130 AACTTGTATGGGCTTT-----G-AAAGGCATCCTACTCTTTGAGGACTAAAA
1648410 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1648442 CATCCTGCTC
Statistics
Matches: 176, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
171 1 0.01
172 44 0.25
174 1 0.01
177 3 0.02
178 127 0.72
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (175 bp):
AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCACCCTACTCCTTGAGGACTGAAAAGT
GCCACCAACTAGTGTGGGCATTAAAAGGAGGCGTCCTACTCTTTAAGGACTAGAAAATGCCACCA
ACTTGTATGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAA
Found at i:1648442 original size:450 final size:441
Alignment explanation
Indices: 1647579--1651980 Score: 1402
Period size: 450 Copynumber: 10.4 Consensus size: 441
1647569 AAAGGAAAAG
** ** * *
1647579 GCGTCCTACTCTTTGAGGACAAGGAGGTGCCACCAACTTGTGTGGGCCTTAAAA-GA-AACATGC
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAA-A-GC
* * * * * * * * *
1647642 ATCCTGCTCTTGGAGAACT-AGAAGGTGCCAACAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
64 ACCCTACTCTTTGAGGATTGGGAA-GTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTC
* * *
1647706 TTTGAGGACTAAAAAAGTGCCACCGACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTT
128 TTTGAGGACT-AGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTT
* * **
1647771 GAGGACT-GAAAAGTGCCACCAACTGGTGTGGGCTTTGAAAGGCGTCCCACTGTTTGAGGACTGG
186 GAGGACTAAAAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGG
* * * * *
1647835 AAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTCTTGCTCTTTGAGGACTTGAAAA
251 AAAATGCCACCAACTAGTGTGGGCATT----AGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAA
* * *
1647900 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCGTCCTGCTTTTTGAGGACTAGAAAAGTG
312 ATGCCACCAACTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTG
* * *
1647965 CCACCAACTTGTGTGGCCTTTAAAAGGCGTCCTACTCTTTGAGTACTAAAAGGC-AAAAGGAGAG
377 CCACCAACTTGTGTGGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGG-GAG
1648029 A
441 A
* * *
1648030 GCGTCCTGCTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAC
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
1648095 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGAAGGCGTCCTG
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTT--AA----AAGGCGTCCTG
* * *
1648160 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTGCTACTCTTTGAGG
125 CTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
* * * **
1648225 ACTAAAAAAGTGCCACCGACTTGTATGGGTTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACT
190 ACTAAAAAAGTGCCACCAACTGGTATGGGCTTT-----G-AAAGGCGTCCCACTCCTTGAGGACT
*
1648290 -GAAAAGTGCCACCAACTAGTGTGGGCATT-G-AAGGGCGTCCTACTCTTTAAGGAC-TGAAAAA
249 GGAAAA-TGCCACCAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAA
*
1648351 TGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCTG-TTCTTTGAGGACTAGAAAAGTG
313 TGCCACCAACTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTT-TTTGAGGACTAGAAAAGTG
* * *
1648415 CCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACCAAAGGGCGAAAAGGGAGA
377 CCACCAACTTGTGTGGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGGGAGA
* *
1648480 GCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAT
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
*
1648545 CCTACTCTTTGAGGATTGGGAAGTGCCATCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
1648610 GAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC---
131 GAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
* * * * * ** * * ** *
1648671 AAAAGGGCGA--AA-----A---G---AGAGA-GCATCCTGCTCTTTGAGGACTAGAAGGTGCCG
195 AAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAATGCCA
* * * *
1648722 CCAACTTGTGTGGGC-TTTG-AAAGGCGTCCCACTCTTT---GA---G----A----ACTAA---
260 CCAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCACCAACTT
* * * * * * *
1648768 --A-GGG---TGAAAGGAGAGAGCATCGTGCTCTTTGAGGAATAG--ATGTGCCACCAACTTGTG
325 GTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTG
** * * * * *
1648825 TAGG-CTTTAAAAGGTGTCCTGCTCTTTGTGGACTAAAGGGCG-AAAGGAGAGG
390 T-GGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGG-GAGA
*** * * *
1648877 GCGTCCTACTCTTTGGGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCAT
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
* * * * * *
1648942 CCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCACTTT
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
* * * * *
1649007 GAGGACT-GAAAAATGCCGCCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACT--
131 GAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
* * * * * * **
1649069 -AAAGCGCGA--AA--GG-A--------GAGA-GCGTCCTACTCTTTGAGGACTAGAAGGTGCCA
195 AAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAATGCCA
* * * * *
1649119 CCAACTTGTGTGGGC-TTGAAAAGGAAAAGGCGTCCTGCTCTTTGAA-GACTAGAAAAGTGCTAC
260 CCAACTAGTGTGGGCATT----A-GAAAAGGCGTCCTACTCTTT-AAGGACTTGAAAAATGCCAC
* * * * * * **
1649182 CAACTTGTGTGGCCTTTAAAA-G----A-CGTCCTACTCTTTGAGTACTACAAGGCAAAAG-GAG
319 CAACTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACT---A-G-AAAAGTGCC
* * * * * * * * * *
1649240 A-GAGC--GTCCT-GCTCTTTGAAGACTGGGAAGTAACACCAACT-TATGTGGGCTTTAAAA-G-
379 ACCAACTTGT-GTGGC-CTTT-AA-A--AGGCA-T----CCTACTCTTTGAGGAC--CAAAAGGC
*
1649298 G---A-GAAG-
431 GAAAAGGGAGA
* ** * * * * * *
1649304 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGG-TTATAAAAGGTGAAGGCG
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCAT-TAAAAGGAGAAAGCA
* * * * * * *
1649368 TCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTCTGGGCTTTGAAAGGCGTCCTACTCT
65 CCCTACTCTTTGAGGATTGGGAA-GTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* * * * *
1649432 TTGAGGACTAAAAAAGTGCCACCGACATGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTG
129 TTGAGGACT-AGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTG
** * * ** * *
1649497 AGGA-TTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCGTCCTGCTCTTTAAGGACTGGA
187 AGGACTAAAAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGA
* * * * ** * * *
1649561 AAATGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCGGCTCTTTGAGGACTAGAAAAG
252 AAATGCCACCAACTAGTGTGGGCATT---A-GAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAA
* * * * * *
1649626 TGCCCCCAACTTGTGTGGGCTTTAAAA-G-----GCATCCTACTCTTTGAGGGCGA-AAGGAGAG
313 TGCCACCAACTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAA--A-AG
** * * * * *** * **
1649684 TGCGTCCTA-TTATTTGAAGAC-TGGGAAGTGCCA-CCAACT-TGTGTG-GGCATTAAAA-G-G-
375 TGCCACCAACTTGTGTG--GCCTTTAAAAG-G-CATCCTACTCT-T-TGAGG-ACCAAAAGGCGA
*
1649741 --A-GAAG-
433 AAAGGGAGA
* * ** * * *
1649746 GCATCCTAGTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGC--TATAAA--AG---GCG
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTA-AAAGGAGAAAGCA
* * * ** * *
1649804 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
65 CCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
*** * * *
1649869 TGAGGAC-A-AAAG-G--GTGAA----TG-GAG---TG--A-GCATCCTGCTCTCTGAGGACT-A
130 TGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
* * ** * * * * **
1649917 GAAGGTGCTGCCAACTTGTGTGGGCTTTGAAAGGCATCCCACTCTTTGAGGACT---AAA-G-GG
195 AAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAATGCCA
** * * * **
1649977 TGAA--AG-GT--G-A-T-----A-GCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTT
260 CCAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCACCAACTT
** * * * * * *
1650028 GTGCGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTCGAGAACTGGAAAA-TGCCACCAACTTGCG
325 GTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTG
* * * *
1650092 TAGG-CTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCG-AAAGGAGAGG
390 T-GGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGG-GAGA
* ** * * * * * * * *
1650144 GCGTCCTTCTCTTTGAGCAGTAGGAAGTGCCACGAACTTATGTGGGCTTTAAAAAGCGAAAGCAT
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
* * * * * * *
1650209 CCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTAT
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
* * * * * * *
1650274 GAGGACT--AAAGGGCGA--AA--------AG----AAAATGCGTCCTGCTCCTTGAGGACT-GA
131 GAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAA
* * ** * * *
1650322 AAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCGTCCTGCTCTTTAAGGACTGAAAAATGCCAC
196 AAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAATGCCAC
* * * * * * * * * *
1650387 CAACTTGTTTAGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACTAA
261 CAACTAGTGTGGGCATT---A-GAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCACCAA
* * * *
1650452 CTTGTGTGGGCTTTAAAA-G-----GCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAG
322 CTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACT--A----GAAA--AGTG-C
* * * *** * * **
1650511 TATCCAACTCTTTGAAGG-C-TGGGAAGTGCCA-CCAACT-TGTGTAGGCATTAAAA-G-G---A
378 CA-CCAACT-TGTG-TGGCCTTTAAAAG-G-CATCCTACTCTTTG-AGG-ACCAAAAGGCGAAAA
*
1650567 -GAAG-
436 GGGAGA
** * * * **
1650571 GCGTCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGC-TTTAAA--AG---GCGT
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
* * *** * * * *
1650630 CCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
* ** * * * * *
1650695 GAGGAC-A-AAAG-G--------GTGAAT-GG---AGAGA-GCATCCTGCTTTTTGAGGACT-AG
131 GAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAA
* *** * * * * **
1650743 AAGGTGTTGCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTTTGAGGACT---AAA-G-GGC
196 AAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAATGCCAC
* * * * * * * * *
1650803 GAA--A-----GG----AG-AGA-GCGTCATACTCTTTGAGCACTAG-GAAGTGCCACTAACTTG
261 CAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCACCAACTTG
* * * * * *
1650854 TGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGT
326 TATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTGT
* ** * ** *
1650918 GGGCTTTAAAAGGCATCCTACTCTTTGAGGA-CTGAA----AAATGCCACCA
391 GGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGGGA-GA
* * *** * ** ** *** *
1650965 TCTTGT-GTGGGCTTT-AAAA--GGCATCCTGCTCTATGAGGAC-T-AAAGGGC--GAAAA-GA-
1 GC--GTCCTACTCTTTGAAAACTGGGA-AGTGC-C-ACCA--ACTTGTGTGGGCATTAAAAGGAG
** * * ** * * *
1651020 AAAGGCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCGTCC
59 AAA-GCACCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
* ** * * *
1651085 TGCTCTTTGAGGAC-A-AAAGGGTGA--AA--------GG---AGAGA-GCATCCTGCTCTTTGA
123 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* * * * * *
1651134 GGACT-AGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCGTCCCACTCTTTGAGGACT--AA
188 GGACTAAAAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAA
*** * ** * * ** *
1651196 AA-G--GTGAA--A-----GG----AG-ATA-GCGTCCCGCTCTTTGAGGACTAG-AAGGTTCCA
253 AATGCCACCAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCA
* * * * * *
1651244 CCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTCGAGAACTGGAAAA-TGCCACCA
318 CCAACTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTGCCACCA
** * * * * *
1651308 ACTTGCATAGG-CTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGC-AAAAGGAGAGG
383 ACTTGTGT-GGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGG-GAGA
** * * * * *
1651367 GCGTCCTACTCTTTGAGCACTAGGAAGTGCCACCAACTTGTGGGGGCTTTAAAAAGAGAAAGCAT
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
** * * * *
1651432 CCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTT
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
* * * * *
1651497 GAGGACT-GAAAAATGCCACCAACTTGTGTGGGCTGT-AAAGGCATCCTACTCTATGAGGACT--
131 GAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
* * * *
1651558 -AAAGGGCGA--AA-----A---G----AAAAGGCGTCCTACTCCTTGAGGACT-GAAAAGTGCC
195 AAAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAA-TGCC
** * * *
1651607 ACCAACGGGTGTGGGC-TTTG-AAGGGCGTCCTGCTCTTTAAGGAC-TGAAAAATGCCACCAACT
259 ACCAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCACCAACT
* * * *
1651669 TGTATGGGCTTCAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAATTTGT
324 TGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGT
* * *
1651733 GTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGA-CTAAAGAGCG-AAAGGAGAGA
389 GTGGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAG-GCGAAAAGG-GAGA
* * * **
1651786 GCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGGCATTAAAAGGAGAAGGCGT
1 GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
* *
1651851 CCAACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTTT
66 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
* * *
1651916 GAGGACT-GAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGCATCCTCCTCTTTGAGGACTAA
131 GAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
1651980 A
195 A
1651981 GGGCAAAAGG
Statistics
Matches: 3120, Mismatches: 529, Indels: 632
0.73 0.12 0.15
Matches are distributed among these distances:
390 30 0.01
391 36 0.01
392 28 0.01
393 29 0.01
394 12 0.00
395 16 0.01
396 25 0.01
397 296 0.09
398 353 0.11
399 60 0.02
400 8 0.00
401 14 0.00
402 15 0.00
403 50 0.02
404 227 0.07
405 7 0.00
406 9 0.00
407 4 0.00
408 11 0.00
409 6 0.00
410 3 0.00
411 1 0.00
412 2 0.00
413 61 0.02
414 3 0.00
415 4 0.00
416 7 0.00
417 11 0.00
418 18 0.01
419 285 0.09
420 41 0.01
421 206 0.07
422 9 0.00
423 6 0.00
424 7 0.00
425 8 0.00
426 41 0.01
427 189 0.06
428 29 0.01
429 4 0.00
430 4 0.00
431 2 0.00
432 23 0.01
433 24 0.01
434 34 0.01
436 74 0.02
437 3 0.00
438 2 0.00
439 2 0.00
440 4 0.00
441 11 0.00
442 60 0.02
443 3 0.00
444 77 0.02
446 2 0.00
447 4 0.00
448 6 0.00
449 6 0.00
450 361 0.12
451 139 0.04
452 7 0.00
453 3 0.00
456 32 0.01
457 66 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (441 bp):
GCGTCCTACTCTTTGAAAACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCAC
CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
GAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAA
AAAGTGCCACCAACTGGTATGGGCTTTGAAAGGCGTCCCACTCCTTGAGGACTGGAAAATGCCAC
CAACTAGTGTGGGCATTAGAAAAGGCGTCCTACTCTTTAAGGACTTGAAAAATGCCACCAACTTG
TATGGGCTTTAAAAGGAAAAAGCATCCTGCTTTTTGAGGACTAGAAAAGTGCCACCAACTTGTGT
GGCCTTTAAAAGGCATCCTACTCTTTGAGGACCAAAAGGCGAAAAGGGAGA
Found at i:1648565 original size:61 final size:59
Alignment explanation
Indices: 1648470--1648644 Score: 207
Period size: 61 Copynumber: 3.0 Consensus size: 59
1648460 CCAAAGGGCG
*
1648470 AAAAGG-GAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTGGGCATT
1 AAAAGGAGA-AGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TT
* * * *
1648530 AAAAGGAGAAAGCATCCTACTCTTTGAGGATTGGGAAGTGCCATCAACTCGTGTGGGCTT
1 AAAAGGAG-AAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT
* * **
1648590 TAAA--AG--GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT
1 AAAAGGAGAAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT
1648645 TGAAAGGCGT
Statistics
Matches: 100, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
55 42 0.42
58 2 0.02
60 11 0.11
61 44 0.44
62 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (59 bp):
AAAAGGAGAAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT
Found at i:1648633 original size:55 final size:55
Alignment explanation
Indices: 1648480--1648670 Score: 229
Period size: 55 Copynumber: 3.4 Consensus size: 55
1648470 AAAAGGGAGA
* *
1648480 GCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAG
1 GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TTTAAA--AG
* * * *
1648538 AAAGCATCCTACTCTTTGAGGATTGGGAAGTGCCATCAACTCGTGTGGGCTTTAAAAG
1 ---GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* ** *
1648596 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
1648651 GCGTCCTGCTCTTTGAGGAC
1 GCGTCCTACTCTTTGAGGAC
1648671 AAAAGGGCGA
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
55 67 0.58
58 2 0.02
60 5 0.04
61 42 0.36
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:1648678 original size:210 final size:208
Alignment explanation
Indices: 1648269--1652252 Score: 1238
Period size: 210 Copynumber: 19.2 Consensus size: 208
1648259 AAAGGAAAAG
* * * * * *
1648269 GCGTCCTGCTCCTTGAGGACT-GAAAAGTGCCACCAACTAGTGTGGGCATT-GAAGG----GCGT
1 GCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAAGCAT
* * * * *
1648328 CCTACTCTTTAAGGACTGAAAAATGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCTG
64 CCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCGTCCTG
*
1648393 TTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
123 CTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
*
1648458 GACCAAAGGGCGAAAAGG-GAGA
187 GACTAAAGGGCG-AAAGGAGAGA
* *
1648480 GCGTCCTACTCTTTGAAGACTGGGAA-GTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAAGCA
1 GCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGA-AAAGCA
* * * *
1648544 TCCTACTCTTTGAGGATTGGGAAGTGCCATCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
63 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * *
1648609 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACAAA
128 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
*
1648674 AGGGCGAAAAGAGAGA
193 AGGGCGAAAGGAGAGA
* * * * * *
1648690 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTT----TGAAAGGCGTCC
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGCATCC
* * * ** * * * *
1648751 CACTCTTTGAGAACT--AAAGGGTGA--AA-----G-GAG-----AGA-GCATCGTGCTCTTTGA
66 TACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
* * * * ** *
1648800 GGAAT-AGATGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCCTGCTCTTTGTGGACTAAAGG
131 GGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGG
*
1648864 GCGAAAGGAGAGG
196 GCGAAAGGAGAGA
* * *
1648877 GCGTCCTACTCTTTGGGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCA
1 GCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGA-AAAGCA
* * *
1648941 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCACTT
63 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * *
1649006 TGAGGACTGAAAAATGCCGCCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACTAA
128 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
*
1649071 AGCGCGAAAGGAGAGA
193 AGGGCGAAAGGAGAGA
*
1649087 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTGAAAAGGAAAAGGCGT
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTT-AAAAGGAAAA-GCAT
* * * * * * *
1649152 CCTGCTCTTTGAAGACTAGAAAAGTGCTACCAACTTGTGTGGCCTTTAAAAGACGTCCTACTCTT
64 CCTACTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * * ** *** * ** * * * ** *
1649217 TGAGTACT-ACAAG-GCAAAAGGAGAGAGCGTCCTGCTCTTTGAAGACTGGGAAGTAACACCAAC
128 TGAGGACTGAAAAGTGC--CACCA-A-CTTGT-GTGGGCTTT-AA-A--AGGCA-T-CCTGC-TC
* * **
1649280 TTATGTGGGCTTTA-----AAAGGAGA-A
181 TT-TGAGGACTAAAGGGCGAAAGGAGAGA
* * * * * * * *
1649303 GGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGGTTATAAAAGGTGAAGGCG
1 -GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCT-TAAAAGG-AAAAGCA
* * * * *
1649368 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTCTGGGCTTTGAAAGGCGTCCTACTCTT
63 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * * *
1649433 TGAGGACTAAAAAAGTGCCACCGACATGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGA
128 TGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCATCCTGCTCTTTGA
* * * * *
1649498 GGATTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGG
186 GGACT--AAAGGGCGA--AA--------GG---AG-AGA
* * * ** *
1649537 GCGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAA-GCAT
** * * * *
1649602 CCGGCTCTTTGAGGACTAGAAAAGTGCCCCCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTT
64 CCTACTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* ** * * * * *** **
1649667 TGAGGGC-GAAAGGAGAGTGCGTCCTA-TTATTTGAAGAC-TGGGAAGTGCCA-CCAACT-TGTG
128 TGAGGACTG-AA--A-AGTGCCACCAACTTGTGTG--GGCTTTAAAAG-G-CATCCTGCTCT-T-
* *
1649727 TG-GGCATTAAA-AG-G--A-GA-AG-
183 TGAGG-ACTAAAGGGCGAAAGGAGAGA
* * * * * *
1649746 GCATCCTAGTCTTTGAGGATTGGGAA-GTGCCACCAACTCGTGTGGGCTATAAAA-G----GCGT
1 GCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCT-TAAAAGGAAAAGCAT
* * *
1649805 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
64 CCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
*** * * *
1649870 GAGGAC--AAAAG-G--GTGAA----TG-GAG---T--GA-GCATCCTGCTCTCTGAGGACTAGA
129 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTA-A
* * *
1649919 AGGTGCTGCCAACTTGTGTGGGCTTTGAAA
193 AGG-GC-G--AA-------AGG---AGAGA
* * * *
1649949 GGCATCCCACTCTTTGAGGACTA-AAGGGTG--A--AA--------GG--T-----G-ATAGCGT
1 -GCGTCCTACTCTTTGAGGACTAGAA-GGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGCAT
* * * * *
1649993 CCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGAAAGCATCCTG
64 CCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG---GCGTCCTG
* * * *
1650058 CTCTTCGAGAACTGGAAAA-TGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTCTTTGAG
123 CTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
*
1650122 GACTAAAGGGCGAAAGGAGAGG
187 GACTAAAGGGCGAAAGGAGAGA
* * * * *
1650144 GCGTCCTTCTCTTTGAGCAGTAGGAA-GTGCCACGAACTTATGTGGGCTTTAAAAAGCG-AAAGC
1 GCGTCCTACTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGC-TT-AAAAG-GAAAAGC
* * *
1650207 ATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
62 ATCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* * * * * * *
1650272 ATGAGGACT--AAAGGGCGA--AA--------AG----AAAATGCGTCCTGCTCCTTGAGGACTG
127 TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT-
* * * *
1650321 AAAAGTGCCACCAACTGGTGTGGGCTTTGAAGG
191 -AAAGGGCGA--AA--------GG---AG-AGA
* * ** * *
1650354 GCGTCCTGCTCTTTAAGGACT-GAAAAATGCCACCAACTTGTTTAGGCTTTAAAAGGAAAAGGCA
1 GCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAA-GCA
* * * *
1650418 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
63 TCCTACTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* ** * ** *** **
1650483 TTGAGGACTAAAGGGCGAAAGGAGAGAGTATCCAACTCTTTGAAGGC-TGGGAAGTGCCA-CCAA
127 TTGAGGACT-------GAAA--AGTG-CCA-CCAACT-TGTGTGGGCTTTAAAAG-G-CATCCTG
* * *
1650546 CT-TGTGTAGGCATTAAA-AG-G--A-GA-AG-
178 CTCTTTG-AGG-ACTAAAGGGCGAAAGGAGAGA
* * * *
1650571 GCGTCCTACTCTTTGAGGATTGGGAA-GTGCCACCAACTCGTGTGGGCTTTAAAA-G----GCGT
1 GCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAAGCAT
* ** * * *
1650630 CCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
64 CCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
*** * * *
1650695 GAGGAC--AAAAG-G--GTGAA----TG-GAG-----AGA-GCATCCTGCTTTTTGAGGACTAGA
129 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTA-A
* * *
1650744 AGGTGTTGCCAACTTGTGTAGGCTTTGAAA
193 A-G-G--GCGAA-------AGG---AGAGA
* * * *
1650774 GGCGTCCCACTCTTTGAGGACTA-AAGG-GCGA--AA--------GG------A-G-AGAGCGTC
1 -GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGCATC
* * * * *
1650819 ATACTCTTTGAGCACTAGG-AAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTA
65 CTACTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCGTCCTG
*
1650883 CTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAG
123 CTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
*
1650947 GACT-------GAAA--A-A-T
187 GACTAAAGGGCGAAAGGAGAGA
** * * * ** *** *
1650958 GCCACC-A-TCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGAC-T-AAAGGGC-GAAAA
1 GCGTCCTACTCTT-TGAGGAC--TAGAAGG-----TGC-C-ACCA--ACTTGTGTGGGCTTAAAA
* * * * * *
1651018 -GAAAAGGCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCG
54 GGAAAA-GCATCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* ** * *
1651082 TCCTGCTCTTTGAGGAC--AAAAGGGTGA--AA-----G-GAG-----AGA-GCATCCTGCTCTT
118 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
* * *
1651131 TGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAA
183 TGAGGACTA-AAGG-G-CG--AA-------AGG---AGAGA
* * * *
1651172 GGCGTCCCACTCTTTGAGGACTAAAAGGTG--A--AA--------GG------A-G-ATAGCGTC
1 -GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGCATC
** * * * *
1651217 CCGCTCTTTGAGGACTAGAAGGTTCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGC
65 CTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG---GCGTCCTGC
* * ** * *
1651282 TCTTCGAGAACTGGAAAA-TGCCACCAACTTGCATAGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
124 TCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
* *
1651346 ACTAAAGGGCAAAAGGAGAGG
188 ACTAAAGGGCGAAAGGAGAGA
* * *
1651367 GCGTCCTACTCTTTGAGCACTAGGAA-GTGCCACCAACTTGTGGGGGCTTTAAAAAGAGAAAGCA
1 GCGTCCTACTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGA-AAAGCA
* * *
1651431 TCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTT
63 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * * *
1651496 TGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTGT-AAAGGCATCCTACTCTATGAGGACTAA
128 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
* *
1651560 AGGGCGAAAAGA-AAA
193 AGGGCGAAAGGAGAGA
* * ** ** *
1651575 GGCGTCCTACTCCTTGAGGACT-GAAAAGTGCCACCAACGGGTGTGGGCTTTGAAGG----GCGT
1 -GCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGCAT
* * * * * * *
1651635 CCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTATGGGCTTCAAAAGGAAAAGGCATCCTG
64 CCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTT------TAAAAGGCGTCCTG
*
1651700 CTCTTTGAGGACT-AGAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
123 CTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
*
1651764 GACTAAAGAGCGAAAGGAGAGA
187 GACTAAAGGGCGAAAGGAGAGA
* * * * *
1651786 GCGTCCTACTCTTTGAAGACTGGGAA-GTGCCACCAACTTGTGTAGGCATTAAAAGGAGAAGGCG
1 GCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGA-AAAGCA
* * * * *
1651850 TCCAACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
63 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * *
1651915 TGAGGACTGAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGCATCCTCCTCTTTGAGGACTAA
128 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
*
1651980 AGGGCAAAAGGAGAGA
193 AGGGCGAAAGGAGAGA
* * * * *
1651996 GCGTCCTACTCTTTGAAGACTGGAA-GTGCCA-CAATCATGTGTGGGCATTAAAAGGAGAAGGCG
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAA-CTTGTGTGGGC-TTAAAAGGA-AAAGCA
* * * * * * *
1652059 TCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAA-GCATCCTGCTTTT
63 TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * * * * * *
1652123 TGAGGAATGGAAAGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTCCTGCACTTTGAGGACAAA
128 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
* *
1652188 AGGGTGAATGGAGAGA
193 AGGGCGAAAGGAGAGA
* * *
1652204 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTT
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTT
1652253 TGAAAGGCGT
Statistics
Matches: 2841, Mismatches: 515, Indels: 837
0.68 0.12 0.20
Matches are distributed among these distances:
181 16 0.01
182 25 0.01
183 8 0.00
184 5 0.00
185 8 0.00
186 1 0.00
187 102 0.04
188 174 0.06
189 13 0.00
190 5 0.00
191 9 0.00
192 6 0.00
193 21 0.01
194 126 0.04
195 16 0.01
196 14 0.00
197 20 0.01
198 20 0.01
199 6 0.00
200 12 0.00
201 8 0.00
202 67 0.02
203 71 0.02
204 81 0.03
205 7 0.00
206 8 0.00
207 8 0.00
208 131 0.05
209 327 0.12
210 687 0.24
211 196 0.07
212 13 0.00
213 11 0.00
214 23 0.01
215 16 0.01
216 189 0.07
217 164 0.06
218 15 0.01
219 8 0.00
220 4 0.00
221 4 0.00
222 10 0.00
223 2 0.00
224 1 0.00
226 2 0.00
229 3 0.00
230 6 0.00
231 8 0.00
232 11 0.00
233 70 0.02
234 47 0.02
235 6 0.00
236 9 0.00
237 3 0.00
238 7 0.00
239 8 0.00
240 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (208 bp):
GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGCATCC
TACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
GGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGG
GCGAAAGGAGAGA
Found at i:1648860 original size:93 final size:94
Alignment explanation
Indices: 1648599--1648930 Score: 452
Period size: 94 Copynumber: 3.5 Consensus size: 94
1648589 TTAAAAGGCG
* *
1648599 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* *
1648664 TGAGGACAAAAGGGCGAAAAGAGAGAGCA
66 TGAGGACTAAAGGGCGAAAGGAGAGAGCA
* * **
1648693 TCCTGCTCTTTGAGGACT-AGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCGTCCCACTCT
1 TCCTGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* *
1648757 TTGAGAACTAAAGGGTGAAAGGAGAGAGCA
65 TTGAGGACTAAAGGGCGAAAGGAGAGAGCA
* * * * *
1648787 TCGTGCTCTTTGAGGAAT-AGATGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * *
1648851 TGTGGACTAAAGGGCGAAAGGAGAGGGCG
66 TGAGGACTAAAGGGCGAAAGGAGAGAGCA
* * *
1648880 TCCTACTCTTTGGGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 TCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1648931 AGAGAAAGCA
Statistics
Matches: 207, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
93 77 0.37
94 130 0.63
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (94 bp):
TCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
TGAGGACTAAAGGGCGAAAGGAGAGAGCA
Found at i:1648903 original size:397 final size:397
Alignment explanation
Indices: 1648385--1649139 Score: 1181
Period size: 397 Copynumber: 1.9 Consensus size: 397
1648375 AAAGGAAAAG
* * *
1648385 GCATCCTGTTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
1 GCATCCTGCTCTTTGAGGAATAG-AAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGC
1648450 TCTTTGAGGACCAAAGGGCGAAAAGGGAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCA
65 TCTTTGAGGACCAAAGGGCGAAAAGGGAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCA
* * * * *
1648515 ACTTGTGTGGGCATTAAAAGGAGAAAGCATCCTACTCTTTGAGGATTGGGAAGTGCCATCAACTC
130 ACTTGTGTGGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTC
* * *
1648580 GTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT
195 GTGTGGGCTTTAAAAGACGTCCTGCACTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTT
* * * * *
1648645 TGAAAGGCGTCCTGCTCTTTGAGGACAAAAGGGCGAAAAGAGAGAGCATCCTGCTCTTTGAGGAC
260 TAAAAGGCATCCTGCTCTATGAGGACAAAAGCGCGAAAAGAGAGAGCATCCTACTCTTTGAGGAC
*
1648710 TAGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCGTCCCACTCTTTGAGAACTAAAGGGTGA
325 TAGAAGGTGCCACCAACTTGTGTGGGC-TTGAAAGGCGTCCCACTCTTTGAGAACTAAAGGGTGA
1648775 AAGGAGAGA
389 AAGGAGAGA
* * **
1648784 GCATCGTGCTCTTTGAGGAATAG-ATGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCCTGCT
1 GCATCCTGCTCTTTGAGGAATAGAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCT
* * * **
1648848 CTTTGTGGACTAAAGGGCG-AAAGGAGAGGGCGTCCTACTCTTTGGGGACTGGGAAGTGCCACCA
66 CTTTGAGGACCAAAGGGCGAAAAGG-GAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCA
* *
1648912 ACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTT
130 ACTTGTGTGGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTC
*
1648977 GTGTGGGCTTTAAAAGACGTCCTGCACTTTGAGGACTGAAAAATGCCGCCAACTTGTGTGGGCTT
195 GTGTGGGCTTTAAAAGACGTCCTGCACTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTT
* * *
1649042 TAAAAGGCATCCTGCTCTATGAGGACTAAAGCGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGAC
260 TAAAAGGCATCCTGCTCTATGAGGACAAAAGCGCGAAAAGAGAGAGCATCCTACTCTTTGAGGAC
1649107 TAGAAGGTGCCACCAACTTGTGTGGGCTTGAAA
325 TAGAAGGTGCCACCAACTTGTGTGGGCTTGAAA
1649140 AGGAAAAGGC
Statistics
Matches: 323, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
396 11 0.03
397 292 0.90
399 20 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (397 bp):
GCATCCTGCTCTTTGAGGAATAGAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCT
CTTTGAGGACCAAAGGGCGAAAAGGGAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAA
CTTGTGTGGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCG
TGTGGGCTTTAAAAGACGTCCTGCACTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT
AAAAGGCATCCTGCTCTATGAGGACAAAAGCGCGAAAAGAGAGAGCATCCTACTCTTTGAGGACT
AGAAGGTGCCACCAACTTGTGTGGGCTTGAAAGGCGTCCCACTCTTTGAGAACTAAAGGGTGAAA
GGAGAGA
Found at i:1649020 original size:55 final size:55
Alignment explanation
Indices: 1648935--1649068 Score: 189
Period size: 55 Copynumber: 2.5 Consensus size: 55
1648925 TTAAAAAGAG
* * *
1648935 AAAG-CATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
1 AAAGACATCCTGCACTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTA
* *
1648989 AAAGACGTCCTGCACTTTGAGGACTGAAAAATGCCGCCAACTTGTGTGGGCTTTA
1 AAAGACATCCTGCACTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTA
* * *
1649044 AAAGGCATCCTGCTCTATGAGGACT
1 AAAGACATCCTGCACTTTGAGGACT
1649069 AAAGCGCGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
54 4 0.06
55 66 0.94
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (55 bp):
AAAGACATCCTGCACTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:1649046 original size:27 final size:27
Alignment explanation
Indices: 1648961--1649046 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
1648951 TGAGGACTGG
*
1648961 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCGCCAACTTGTGTGGGCTTT
* * * * **
1648988 AAAA-GACGTCCTGCACTT-TGAGGACTGA
1 AAAATGCCG-CC--AACTTGTGTGGGCTTT
1649016 AAAATGCCGCCAACTTGTGTGGGCTTT
1 AAAATGCCGCCAACTTGTGTGGGCTTT
1649043 AAAA
1 AAAA
1649047 GGCATCCTGC
Statistics
Matches: 41, Mismatches: 13, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
26 6 0.15
27 16 0.39
28 12 0.29
29 7 0.17
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (27 bp):
AAAATGCCGCCAACTTGTGTGGGCTTT
Found at i:1649046 original size:28 final size:28
Alignment explanation
Indices: 1648961--1649046 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 28
1648951 TGAGGACTGG
*
1648961 AAAATGCCACCAACTTGTGTGGGCTTTA
1 AAAATGCCGCCAACTTGTGTGGGCTTTA
* * * *
1648989 AAAGACGTCCTG-C-ACTT-TGAGGAC-TGA
1 AAA-ATG-CC-GCCAACTTGTGTGGGCTTTA
1649016 AAAATGCCGCCAACTTGTGTGGGCTTTA
1 AAAATGCCGCCAACTTGTGTGGGCTTTA
1649044 AAA
1 AAA
1649047 GGCATCCTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 14
0.65 0.14 0.22
Matches are distributed among these distances:
24 1 0.02
25 3 0.07
26 6 0.14
27 10 0.24
28 13 0.31
29 6 0.14
30 3 0.07
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (28 bp):
AAAATGCCGCCAACTTGTGTGGGCTTTA
Found at i:1649172 original size:61 final size:62
Alignment explanation
Indices: 1649087--1649203 Score: 173
Period size: 62 Copynumber: 1.9 Consensus size: 62
1649077 AAAGGAGAGA
* * *
1649087 GCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTGAAAAGGAAAAG
1 GCGTCCTACTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTGGCCTTGAAAAGGAAAAG
* * *
1649148 GCGTCCTGCTCTTTGAAGACTAGAAAAGTGCTACCAACTTGTGTGGCCTTTAAAAG
1 GCGTCCTACTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTGGCCTTGAAAAG
1649204 ACGTCCTACT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 21 0.43
62 28 0.57
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (62 bp):
GCGTCCTACTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTGGCCTTGAAAAGGAAAAG
Found at i:1649216 original size:56 final size:58
Alignment explanation
Indices: 1649086--1649219 Score: 157
Period size: 62 Copynumber: 2.3 Consensus size: 58
1649076 GAAAGGAGAG
* * *
1649086 AGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTGAAAAGGAAA
1 AGCGTCCTACTCTTTGAAGACTAGAAAGTGCCACCAACTTGTGTGGCCTTGAAAAGG--A
* * *
1649146 AGGCGTCCTGCTCTTTGAAGACTAGAAAAGTGCTACCAACTTGTGTGGCCTTTAAAA-G-
1 A-GCGTCCTACTCTTTGAAGACTAG-AAAGTGCCACCAACTTGTGTGGCCTTGAAAAGGA
1649204 A-CGTCCTACTCTTTGA
1 AGCGTCCTACTCTTTGA
1649220 GTACTACAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
56 14 0.22
58 1 0.02
60 1 0.02
61 22 0.34
62 27 0.42
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (58 bp):
AGCGTCCTACTCTTTGAAGACTAGAAAGTGCCACCAACTTGTGTGGCCTTGAAAAGGA
Found at i:1649255 original size:156 final size:153
Alignment explanation
Indices: 1648927--1649348 Score: 514
Period size: 156 Copynumber: 2.8 Consensus size: 153
1648917 TGTGGGCTTT
* * * *
1648927 AAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * * *
1648992 -G--A--CGTCCTGCACTTTGAGGACTGAAAAATGCCGCCAACTTGTGTGGGCTTTAAAAGGCAT
65 GGAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGACAT
*
1649052 CCTGCTCTATGAGGACTAAAGCGC
130 CCTACTCTATGAGGACTAAAGCGC
* * *
1649076 GAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTGAAAA
1 AAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAA
* *
1649141 GGAAAAGGCGTCCTGCTCTTTGAAGACTAGAAAAGTGCTACCAACTTGTGTGGCCTTTAAAAGAC
65 GG-AAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGAC
* * *
1649206 GTCCTACTCTTTGAGTACTACAAG-GC
128 ATCCTACTCTATGAGGACTA-AAGCGC
* * ** *
1649232 AAAAGGAGAGAGCGTCCTGCTCTTTGAAGACTGGGAAGTAACACCAACTTATGTGGGCTTTAAAA
1 AAAAGGAGAGAGCGTCCTACTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* *
1649297 GGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGG
65 GGA-AAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGG
1649349 GTTATAAAAG
Statistics
Matches: 232, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
148 2 0.01
149 55 0.24
150 1 0.00
153 1 0.00
155 40 0.17
156 127 0.55
157 6 0.03
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (153 bp):
AAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
GAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGACATC
CTACTCTATGAGGACTAAAGCGC
Found at i:1649309 original size:61 final size:61
Alignment explanation
Indices: 1649232--1649654 Score: 428
Period size: 61 Copynumber: 7.1 Consensus size: 61
1649222 ACTACAAGGC
* ** ** *
1649232 AAAAGGAG-AGAGCGTCCTGCTCTTTGAAGACTGGGAAGTAACACCAACTTATGTGGGCTTT
1 AAAAGGAGAAG-GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
1649293 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGG-TTAT
1 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT-T
* * * *
1649354 AAAAGGTGAAGGCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTCTGGGCTTT
1 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1649415 -----GA-AAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCGACATGTGTGGGCTTT
1 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
1649471 AAAAGGAAAAGGCATCCTGCTCCTTGAGGATTGAAAAGTGCCACCAACTGGTGTGGGCTTT
1 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
1649532 -----GA-AGGGCGTCCTGCTCTTTAAGGACTGGAAAA-TGCCACCAACTTGTATGGGCTTT
1 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1649587 AAAAGGAAAAGGCATCCGGCTCTTTGAGGACTAGAAAAGTGCCCCCAACTTGTGTGGGCTTT
1 AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
1649649 AAAAGG
1 AAAAGG
1649655 CATCCTACTC
Statistics
Matches: 303, Mismatches: 39, Indels: 39
0.80 0.10 0.10
Matches are distributed among these distances:
55 64 0.21
56 31 0.10
57 1 0.00
60 4 0.01
61 152 0.50
62 51 0.17
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (61 bp):
AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:1649498 original size:117 final size:116
Alignment explanation
Indices: 1649301--1649671 Score: 471
Period size: 117 Copynumber: 3.2 Consensus size: 116
1649291 TTAAAAGGAG
* * **
1649301 AAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGG-TTATAAAAGGTGAAG
1 AAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACT-GTGTGGGCTT-TAAAAGGAAAAG
* * * *
1649365 GCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTCTGGGCTTTGA
64 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGA
* *
1649417 AAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCGACATGTGTGGGCTTTAAAAGGAAAAG
1 AAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAAC-TGTGTGGGCTTTAAAAGGAAAAG
* * *
1649482 GCATCCTGCTCCTTGAGGA-TTGAAAAGTGCCACCAACTGGTGTGGGCTTTGA
64 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGA
* * * *
1649534 AGGGCGTCCTGCTCTTTAAGGACTGGAAAA-TGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
1 AAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAAC-TGTGTGGGCTTTAAAAGGAAAAG
* * *
1649598 GCATCCGGCTCTTTGAGGACTAGAAAAGTGCCCCCAACTTGTGTGGGCTTTAA
64 GCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGA
*
1649651 AAGGCATCCTACTCTTTGAGG
1 AAGGCGTCCTACTCTTTGAGG
1649672 GCGAAAGGAG
Statistics
Matches: 219, Mismatches: 31, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
116 73 0.33
117 143 0.65
118 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (116 bp):
AAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTGTGTGGGCTTTAAAAGGAAAAGGC
ATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGA
Found at i:1649612 original size:178 final size:175
Alignment explanation
Indices: 1649273--1649654 Score: 448
Period size: 178 Copynumber: 2.1 Consensus size: 175
1649263 TGGGAAGTAA
* * * * * *
1649273 CACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACC
1 CACCAACATGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACC
* **
1649338 AACTCGTGTGGGTTATAAAAGGTGAAGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACT
66 AACTCGTGTGGGTTATAAAA-G-G-AGGCGTCCTACTCTTTAAGGACTAGAAAATGCCACCAACT
* * *
1649403 TGTCTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAAAAGTGC
128 TGTATGGGCTTTGAAAGGCATCCGACTCTTTGAGGACTAAAAAAGTGC
* *
1649451 CACCGACATGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGGATTGAAAAGTGCCACC
1 CACCAACATGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACC
* * * *
1649516 AACTGGTGTGGGCTT-T-GAA-G-GGCGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTG
66 AACTCGTGTGGG-TTATAAAAGGAGGCGTCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTG
* *
1649577 TATGGGCTTTAAAAGGAAAAGGCATCCGGCTCTTTGAGGACTAGAAAAGTGC
130 TATGGGCTTT-----G-AAAGGCATCCGACTCTTTGAGGACTAAAAAAGTGC
* *
1649629 CCCCAACTTGTGTGGGCTTTAAAAGG
1 CACCAACATGTGTGGGCTTTAAAAGG
1649655 CATCCTACTC
Statistics
Matches: 174, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
172 45 0.26
174 1 0.01
177 3 0.02
178 123 0.71
179 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (175 bp):
CACCAACATGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACC
AACTCGTGTGGGTTATAAAAGGAGGCGTCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGT
ATGGGCTTTGAAAGGCATCCGACTCTTTGAGGACTAAAAAAGTGC
Found at i:1649770 original size:61 final size:58
Alignment explanation
Indices: 1649696--1649875 Score: 194
Period size: 55 Copynumber: 3.2 Consensus size: 58
1649686 CGTCCTATTA
*
1649696 TTTGAAGACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAGGCATCCTAG-TC
1 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TT-AAAGGA-AAGGCATCCT-GCTC
* * * *
1649757 TTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGC-TATA--AAAGGCGTCCTGCTC
1 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTAAAGGAAAGGCATCCTGCTC
** * *
1649812 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT---TGAAAGGCGTCCTGCTC
1 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTAAAGGAAAGGCATCCTGCTC
1649867 TTTGAGGAC
1 TTTGAGGAC
1649876 AAAAGGGTGA
Statistics
Matches: 106, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
54 1 0.01
55 67 0.63
56 2 0.02
58 2 0.02
59 1 0.01
61 33 0.31
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (58 bp):
TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTAAAGGAAAGGCATCCTGCTC
Found at i:1649965 original size:94 final size:94
Alignment explanation
Indices: 1649804--1650044 Score: 333
Period size: 94 Copynumber: 2.6 Consensus size: 94
1649794 ATAAAAGGCG
* * **
1649804 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCCACTCT
*
1649868 TTGAGGACAAAAGGGTGAATGGAG-TGAGCA
65 TTGAGGACAAAAGGGTGAAAGGAGAT-AGCA
* **
1649898 TCCTGCTCTCTGAGGACTAGAAGGTGCTGCCAACTTGTGTGGGCTTTGAAAGGCATCCCACTCTT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCCACTCTT
* * *
1649963 TGAGGACTAAAGGGTGAAAGGTGATAGCG
66 TGAGGACAAAAGGGTGAAAGGAGATAGCA
* *
1649992 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGG
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1650045 AGAAAGCATC
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
94 127 0.98
95 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (94 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCCACTCTT
TGAGGACAAAAGGGTGAAAGGAGATAGCA
Found at i:1650061 original size:61 final size:55
Alignment explanation
Indices: 1649992--1650130 Score: 145
Period size: 61 Copynumber: 2.4 Consensus size: 55
1649982 GGTGATAGCG
* *
1649992 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGAAAGCA
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGCGCAGGCTTT-AAA--AG---GCA
* * * ** *
1650053 TCCTGCTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGCGCAGGCTTTAAAAGGCA
1650108 TCCTGCTCTTTGAGGACTA-AAGG
1 TCCTGCTCTTTGAGGACTAGAAGG
1650131 GCGAAAGGAG
Statistics
Matches: 65, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
54 2 0.03
55 19 0.29
58 2 0.03
60 3 0.05
61 39 0.60
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGCGCAGGCTTTAAAAGGCA
Found at i:1650176 original size:155 final size:153
Alignment explanation
Indices: 1649537--1649821 Score: 230
Period size: 148 Copynumber: 1.9 Consensus size: 153
1649527 GCTTTGAAGG
* * *
1649537 GCGTCCTGCTCTTTAAGGACT-GGAAAATGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCA
1 GCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAA-GCA
* * * * *
1649601 TCCGGCTCTTTGAGGACTAGAAAAGTGCCCCCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCT
63 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCT
**
1649666 TT---G-----AGGGCGAAAGGAGAGT
127 TTGAGGACTAAAGGGCGAAAGGAGAAA
** * * * *
1649685 GCGTCCTATTATTTGAAGACTGGGAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAGAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AA-GCAT
* * * * * * *
1649750 CCTAG-TCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTATAAAAGGCGTCCTGCTCTT
64 CCT-GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTT
1649814 TGAGGACT
128 TGAGGACT
1649822 GAAAAGTGCC
Statistics
Matches: 110, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
147 38 0.35
148 68 0.62
149 3 0.03
150 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (153 bp):
GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCATCC
TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGA
GGACTAAAGGGCGAAAGGAGAAA
Found at i:1650343 original size:155 final size:154
Alignment explanation
Indices: 1649894--1650436 Score: 578
Period size: 155 Copynumber: 3.5 Consensus size: 154
1649884 GAATGGAGTG
* * ** ** * * **
1649894 AGCATCCTGCTCTCTGAGGACTAGAAGGTGCTGCCAACTTGTGTGGGCTTTGAAAGGCATCCCAC
1 AGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGC
* *** *
1649959 TCTTTGAGGACTAAAGGGTG-AAAGGTGATAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACC
66 TCTTTGAGGACTAAAGGGCGAAAAGAAAAT-GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACC
* *
1650023 AACTTGTGCGGGCTTTAAAAGGAGAA
130 AACTTGTGTGGGCTTTAAAAAG-GAA
* * *
1650049 AGCATCCTGCTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGC
1 AGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGC
* * ** * * * * *
1650114 TCTTTGAGGACTAAAGGGCGAAAGGAGAGGGCGTCCTTCTCTTTGAGCAGTAGGAAGTGCCACGA
66 TCTTTGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCA
*
1650179 ACTTATGTGGGCTTTAAAAAGCGAA
131 ACTTGTGTGGGCTTTAAAAAG-GAA
* * *
1650204 AGCATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
1 AGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGC
* *
1650269 TCTATGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCCTTGAGGACT-GAAAAGTGCCACC
66 TCTTTGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACC
* *
1650333 AACTGGTGTGGGCTTT--GAAGG--
130 AACTTGTGTGGGCTTTAAAAAGGAA
* * * *
1650354 -GCGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTTTAGGCTTTAAAAGGAAAAGGCA
1 AGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTT------AAAAGGCA
1650418 TCCTGCTCTTTGAGGACTA
60 TCCTGCTCTTTGAGGACTA
1650437 GAAAAGTGCC
Statistics
Matches: 322, Mismatches: 58, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
149 43 0.13
152 1 0.00
153 3 0.01
154 1 0.00
155 271 0.84
156 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (154 bp):
AGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGC
TCTTTGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCA
ACTTGTGTGGGCTTTAAAAAGGAA
Found at i:1650492 original size:56 final size:55
Alignment explanation
Indices: 1650302--1650491 Score: 227
Period size: 55 Copynumber: 3.3 Consensus size: 55
1650292 AGAAAATGCG
* * * * *
1650302 TCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * * *
1650357 TCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTTTAGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCA
*
1650418 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1650474 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
1650492 AAAGGGCGAA
Statistics
Matches: 114, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
55 41 0.36
56 26 0.23
61 22 0.19
62 25 0.22
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:1650580 original size:366 final size:364
Alignment explanation
Indices: 1649989--1650649 Score: 950
Period size: 366 Copynumber: 1.8 Consensus size: 364
1649979 AAAGGTGATA
* ** *
1649989 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGAAAGCAT
1 GCGTCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGCAGGCTTTAAAAGGAGAAAGCAT
*
1650054 CCTGCTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTCTTT
66 CCTGCTCTTCGAGAACTAGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTCTTT
* * ** *
1650119 GAGGACTAAAGGGCGAAAGGAGAGGGCGTCCTTCTCTTTGAGCAGTAGGAAGTGCCACGAACTTA
131 GAGGACTAAAGGGCGAAAGGAGAGAGCATCCAACTCTTTGAGCA-TAGGAAGTGCCACCAACTTA
* * * * *
1650184 TGTGGGCTTTAAAAAGCGAAAGCATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTG
195 TGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTG
1650249 GGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCCTTG
260 GGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCCTTG
1650314 AGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGG
325 AGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGG
**
1650354 GCGTCCTGCTCTTTAAGGACT-GAAAAATGCCACCAACTTGTTTAGGCTTTAAAAGGA-AAAGGC
1 GCGTCCTGCTCTTTAAGGACTAG-AAAATGCCACCAACTTGTGCAGGCTTTAAAAGGAGAAA-GC
* * * * *
1650417 ATCCTGCTCTTTGAGGACTAGAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCATCCTGCTC
64 ATCCTGCTCTTCGAGAACTAGAAAA-TGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTC
* *
1650482 TTTGAGGACTAAAGGGCGAAAGGAGAGAGTATCCAACTCTTTGAAGGC-TGGGAAGTGCCACCAA
128 TTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCAACTCTTTG-A-GCATAGGAAGTGCCACCAA
* * * * * * *
1650546 CTTGTGTAGGCATTAAAAGGAGAAGGCGTCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCG
191 CTTATGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCG
* *
1650611 TGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAA
256 TGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAA
1650650 AAGAGCCACC
Statistics
Matches: 258, Mismatches: 33, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
364 4 0.02
365 73 0.28
366 178 0.69
367 1 0.00
368 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (364 bp):
GCGTCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGCAGGCTTTAAAAGGAGAAAGCAT
CCTGCTCTTCGAGAACTAGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTCTTT
GAGGACTAAAGGGCGAAAGGAGAGAGCATCCAACTCTTTGAGCATAGGAAGTGCCACCAACTTAT
GTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGG
GCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCCTTGA
GGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGG
Found at i:1650658 original size:55 final size:55
Alignment explanation
Indices: 1650568--1650704 Score: 186
Period size: 55 Copynumber: 2.5 Consensus size: 55
1650558 TTAAAAGGAG
* * *** *
1650568 AAGGCGTCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAA
1 AAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTCGTGTGGGCTTTAA
* *
1650623 AAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGA
1 AAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTCGTGTGGGCTTTAA
*
1650678 AAGGCATCCTGCTCTTTGAGGAC-AAAA
1 AAGGCGTCCTGCTCTTTGAGGACTAAAA
1650705 GGGTGAATGG
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
54 4 0.05
55 69 0.95
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (55 bp):
AAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTCGTGTGGGCTTTAA
Found at i:1650768 original size:366 final size:364
Alignment explanation
Indices: 1649895--1650775 Score: 900
Period size: 366 Copynumber: 2.4 Consensus size: 364
1649885 AATGGAGTGA
* * * ** **
1649895 GCATCCTGCTCTCTGAGGACTAGAAGGTGCTGCCAACTTGTGTGGGCTTTGAAAGGCATCCCACT
1 GCATCCTGCTCTATGAGGACTAAAAGGAGCAACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
* * * *
1649960 CTTTGAGGACTAAAGGGTGAAAGGTGATAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAA
66 CTTTGAGGACAAAAGGGTGAATGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAA
** *
1650025 CTTGTGCGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTCGAGAACTGGAAAATGCCACCAACTTG
131 CTTGTGTAGGCTTTAAAAGGAGAAAGCATCCTGCTCTTCGAGAACTAGAAAATGCCACCAACTTG
* * **
1650090 CGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGGGCGTCCTTCTC
196 CGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCAACTC
* * * * *
1650155 TTTGAGCAGTAGGAAGTGCCACGAACTTATGTGGGCTTTAAAAAGCGAAAGCATCCTACTTTTTG
261 TTTGAGCA-TAGGAAGTGCCACCAACTTATGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTG
*
1650220 AGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
325 AGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAG
* * * ** ** * **
1650260 GCATCCTGCTCTATGAGGACTAAAGGGCGAAAAGAAAATGCGTCCTGCTCCTTG--AGG-A--CT
1 GCATCCTGCTCTATGAGGACTAAAAGGAGCAACCAACTTGTGT-GGGCT--TTGAAAGGCATCCT
***** ** ** ** * * * **
1650320 GAAAAGTG-CCACCAACTGGTGTGGGCTTTGA-AGGGCGTCCTGCTCTTTAAGGACT-GAAAAAT
63 GCTCTTTGAGGA-CAAAAGG-GT--GAATGGAGAGAGCGTCCTGCTCTTTGAGGACTAG-AAGGT
* * *
1650382 GCCACCAACTTGTTTAGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAGAAAAGTGC
123 GCCACCAACTTGTGTAGGCTTTAAAAGGAGAAA-GCATCCTGCTCTTCGAGAACTAGAAAA-TGC
* * *
1650446 CACTAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAG
186 CACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAG
* * * * * *
1650511 TATCCAACTCTTTGAAGGC-TGGGAAGTGCCACCAACTTGTGTAGGCATTAAAAGGAGAAGGCGT
251 CATCCAACTCTTTG-A-GCATAGGAAGTGCCACCAACTTATGTAGGCATTAAAAAGAGAAAGCAT
* * *
1650575 CCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
314 CCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAG
* * * *
1650626 GCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
1 GCATCCTGCTCTATGAGGACTAAAAGGAGCAACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
* * ***
1650691 CTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTTTTTGAGGACTAGAAGGTGTTGCCAA
66 CTTTGAGGACAAAAGGGTGAATGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAA
*
1650756 CTTGTGTAGGCTTTGAAAGG
131 CTTGTGTAGGCTTTAAAAGG
1650776 CGTCCCACTC
Statistics
Matches: 395, Mismatches: 101, Indels: 39
0.74 0.19 0.07
Matches are distributed among these distances:
362 1 0.00
363 10 0.03
364 6 0.02
365 116 0.29
366 242 0.61
367 4 0.01
368 15 0.04
369 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (364 bp):
GCATCCTGCTCTATGAGGACTAAAAGGAGCAACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
CTTTGAGGACAAAAGGGTGAATGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAA
CTTGTGTAGGCTTTAAAAGGAGAAAGCATCCTGCTCTTCGAGAACTAGAAAATGCCACCAACTTG
CGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCAACTC
TTTGAGCATAGGAAGTGCCACCAACTTATGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGA
GGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAG
Found at i:1650784 original size:825 final size:818
Alignment explanation
Indices: 1649471--1650950 Score: 2460
Period size: 825 Copynumber: 1.8 Consensus size: 818
1649461 TGTGGGCTTT
*
1649471 AAAAGGAAAAGGCATCCTGCTCCTTGAGGATTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAG
1 AAAAGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAG
* *
1649536 GGCGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCA
66 GGCGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTATAGGCTTTAAAAGGAAAAGGCA
*
1649601 TCCGGCTCTTTGAGGACTAGAAAAGTGCCCCCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCT
131 TCCGGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCT
* * * * *
1649666 TTGAGGGCGAAAGGAGAGTGCGTCCTATTATTTGAAGACTGGGAAGTGCCACCAACTTGTGTGGG
196 TTGAGGGCGAAAGGAGAGAGCATCCAACTATTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGG
*
1649731 CATTAAAAGGAGAAGGCATCCTAGTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTAT
261 CATTAAAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTAT
* * *
1649796 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
326 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
*
1649861 CTGCTCTTTGAGGACAAAAGGGTGAATGGAGTGAGCATCCTGCTCTCTGAGGACTAGAAGGTGCT
391 CTGCTCTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTCTGAGGACTAGAAGGTGCT
* * * *
1649926 GCCAACTTGTGTGGGCTTTGAAAGGCATCCCACTCTTTGAGGACTAAAGGGTGAAAGGTGATAGC
456 GCCAACTTGTGTAGGCTTTGAAAGGCATCCCACTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGC
* * * *
1649991 GTCCTGCTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGAAAGCATC
521 GTCATACTCTTTGAGCACTAGGAA-GTGCCACCAACTTGTGCGGGCTTTAAAAAGAGAAAGCATC
* *
1650055 CTGCTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTGCTCTTTG
585 CTACTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTACTCTTTG
1650120 AGGACTAAAGGGCGAAAGGAGAGGGCGTCCTTCTCTTTGAGCAGTAGGAAGTGCCACGAACTTAT
650 AGGACTAAAGGGCGAAAGGAGAGGGCGTCCTTCTCTTTGAGCAGTAGGAAGTGCCACGAACTTAT
1650185 GTGGGCTTTAAAAAGCGAAAGCATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGG
715 GTGGGCTTTAAAAAGCGAAAGCATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGG
1650250 GCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCG
780 GCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCG
* *
1650289 AAAA-GAAAATGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAG
1 AAAAGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAG
*
1650353 GGCGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTTTAGGCTTTAAAAGGAAAAGGCA
66 GGCGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTATAGGCTTTAAAAGGAAAAGGCA
* * *
1650418 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
131 TCCGGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCT
* * *
1650483 TTGAGGACTAAAGGGCGAAAGGAGAGAGTATCCAACTCTTTGAAGGCTGGGAAGTGCCACCAACT
196 TT---G-----AGGGCGAAAGGAGAGAGCATCCAACTATTTGAAGACTGGGAAGTGCCACCAACT
*
1650548 TGTGTAGGCATTAAAAGGAGAAGGCGTCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTG
253 TGTGTAGGCATTAAAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTG
*
1650613 TGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGA
318 TGGGCTATAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGA
* *
1650678 AAGGCATCCTGCTCTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTTTTTGAGGACTAG
383 AAGGCATCCTGCTCTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTCTGAGGACTAG
* *
1650743 AAGGTGTTGCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTTTGAGGACTAAAGGGCGAAAG
448 AAGGTGCTGCCAACTTGTGTAGGCTTTGAAAGGCATCCCACTCTTTGAGGACTAAAGGGCGAAAG
* *
1650808 GAGAGAGCGTCATACTCTTTGAGCACTAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAGA
513 GAGAGAGCGTCATACTCTTTGAGCACTAGGAAGTGCCACCAACTTGTGCGGGCTTTAAAAAGAGA
* * * *
1650873 AAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTA
578 AAGCATCCTACTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTA
1650938 CTCTTTGAGGACT
643 CTCTTTGAGGACT
1650951 GAAAAATGCC
Statistics
Matches: 608, Mismatches: 45, Indels: 11
0.92 0.07 0.02
Matches are distributed among these distances:
817 182 0.30
818 4 0.01
820 1 0.00
825 418 0.69
826 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (818 bp):
AAAAGGAAAAGGCATCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAG
GGCGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTATAGGCTTTAAAAGGAAAAGGCA
TCCGGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCT
TTGAGGGCGAAAGGAGAGAGCATCCAACTATTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGG
CATTAAAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTAT
AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
CTGCTCTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTCTGAGGACTAGAAGGTGCT
GCCAACTTGTGTAGGCTTTGAAAGGCATCCCACTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGC
GTCATACTCTTTGAGCACTAGGAAGTGCCACCAACTTGTGCGGGCTTTAAAAAGAGAAAGCATCC
TACTCTTCGAGAACTGGAAAATGCCACCAACTTGCGTAGGCTTTAAAAGGCATCCTACTCTTTGA
GGACTAAAGGGCGAAAGGAGAGGGCGTCCTTCTCTTTGAGCAGTAGGAAGTGCCACGAACTTATG
TGGGCTTTAAAAAGCGAAAGCATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGG
CTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCG
Found at i:1650790 original size:94 final size:94
Alignment explanation
Indices: 1650629--1651267 Score: 507
Period size: 94 Copynumber: 6.6 Consensus size: 94
1650619 TTAAAAGGCG
* * * * *
1650629 TCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
* *
1650694 TGAGGACAAAAGGGTGAATGGAGAGAGCA
66 TGAGGACAAAAGGGCGAAAGGAGAGAGCA
* * *** * * *
1650723 TCCTGCTTTTTGAGGACTAGAAGGTGTTGCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTT
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
* *
1650788 TGAGGACTAAAGGGCGAAAGGAGAGAGCG
66 TGAGGACAAAAGGGCGAAAGGAGAGAGCA
* * * *
1650817 TCATACTCTTTGAGCACTAGGAA-GTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCC
1 TCCTACTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCATCC
* * * *
1650881 TACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCA
59 TACTCTTTGAGGAC---AAAAGGGCGA--AA-----G-GAG-----AGA-GCA
** * * *
1650933 TCCTACTCTTTGAGGACT-GAAAAATGCCACCATCTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
1 TCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCT
* * * * *
1650997 ATGAGGACTAAAGGGCGAAAAGA-AAAGGCG
65 TTGAGGACAAAAGGGCGAAAGGAGAGA-GCA
* * * * * *
1651027 TCCTACTCCTTGAGGACT-GAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCGTCCTGCTCT
1 TCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCT
*
1651091 TTGAGGACAAAAGGGTGAAAGGAGAGAGCA
65 TTGAGGACAAAAGGGCGAAAGGAGAGAGCA
* * * *
1651121 TCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCGTCCCACTCTT
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
* * *
1651186 TGAGGACTAAAA-GGTGAAAGGAGATAGCG
66 TGAGGAC-AAAAGGGCGAAAGGAGAGAGCA
** * *
1651215 TCCCGCTCTTTGAGGACTAGAAGGTTCCACCAACTTGTGTGGGCTTTAAAAGG
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1651268 AGAAAGCATC
Statistics
Matches: 440, Mismatches: 75, Indels: 60
0.77 0.13 0.10
Matches are distributed among these distances:
94 323 0.73
95 10 0.02
99 2 0.00
100 21 0.05
102 3 0.01
103 3 0.01
104 2 0.00
106 2 0.00
107 3 0.01
108 3 0.01
109 1 0.00
110 22 0.05
111 1 0.00
114 1 0.00
115 4 0.01
116 39 0.09
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (94 bp):
TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
TGAGGACAAAAGGGCGAAAGGAGAGAGCA
Found at i:1650886 original size:61 final size:56
Alignment explanation
Indices: 1650820--1651005 Score: 218
Period size: 55 Copynumber: 3.3 Consensus size: 56
1650810 GAGAGCGTCA
* * *
1650820 TACTCTTTGAGCACTAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCC
1 TACTCTTTGAGGACT-GGAAATGCCACCAACTTGTGTGGGCTTTAAAAA-AG---GCATCC
1650881 TACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--AAAAGGCATCC
1 TACTCTTTGAGGACTGG-AAATGCCACCAACTTGTGTGGGCTTTAAAAAAGGCATCC
* *
1650936 TACTCTTTGAGGACTGAAAAATGCCACCATCTTGTGTGGGCTTT--AAAAGGCATCC
1 TACTCTTTGAGGACTG-GAAATGCCACCAACTTGTGTGGGCTTTAAAAAAGGCATCC
* *
1650991 TGCTCTATGAGGACT
1 TACTCTTTGAGGACT
1651006 AAAGGGCGAA
Statistics
Matches: 116, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
55 71 0.61
58 2 0.02
59 3 0.03
60 2 0.02
61 38 0.33
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (56 bp):
TACTCTTTGAGGACTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAAAGGCATCC
Found at i:1650957 original size:55 final size:55
Alignment explanation
Indices: 1650841--1651005 Score: 231
Period size: 55 Copynumber: 2.9 Consensus size: 55
1650831 CACTAGGAAG
* *
1650841 TGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCATCCTACTCTTTGAGGACTGAAAAA
1650902 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAAAA
* * *
1650957 TGCCACCATCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACT
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT
1651006 AAAGGGCGAA
Statistics
Matches: 99, Mismatches: 5, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
55 72 0.73
58 2 0.02
59 3 0.03
61 22 0.22
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (55 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAAAA
Found at i:1650983 original size:27 final size:27
Alignment explanation
Indices: 1650898--1650983 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
1650888 TGAGGACTGG
*
1650898 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCATCTTGTGTGGGCTTT
* * * **
1650925 AAAA-GGCATCCTACTCTT-TGAGGACTGA
1 AAAATGCCA-CC-A-TCTTGTGTGGGCTTT
1650953 AAAATGCCACCATCTTGTGTGGGCTTT
1 AAAATGCCACCATCTTGTGTGGGCTTT
1650980 AAAA
1 AAAA
1650984 GGCATCCTGC
Statistics
Matches: 43, Mismatches: 11, Indels: 10
0.67 0.17 0.16
Matches are distributed among these distances:
26 7 0.16
27 17 0.40
28 13 0.30
29 6 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (27 bp):
AAAATGCCACCATCTTGTGTGGGCTTT
Found at i:1650983 original size:28 final size:28
Alignment explanation
Indices: 1650898--1650983 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 28
1650888 TGAGGACTGG
*
1650898 AAAATGCCACCAACTTGTGTGGGCTTT-
1 AAAATGCCACCATCTTGTGTGGGCTTTA
* * * *
1650925 AAAA-GGCATCCTACTCTT-TGAGGAC-TGA
1 AAAATGCCA-CC-A-TCTTGTGTGGGCTTTA
1650953 AAAATGCCACCATCTTGTGTGGGCTTTA
1 AAAATGCCACCATCTTGTGTGGGCTTTA
1650981 AAA
1 AAA
1650984 GGCATCCTGC
Statistics
Matches: 43, Mismatches: 9, Indels: 13
0.66 0.14 0.20
Matches are distributed among these distances:
26 7 0.16
27 13 0.30
28 17 0.40
29 6 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (28 bp):
AAAATGCCACCATCTTGTGTGGGCTTTA
Found at i:1651161 original size:304 final size:303
Alignment explanation
Indices: 1650404--1651167 Score: 996
Period size: 304 Copynumber: 2.5 Consensus size: 303
1650394 TTTAGGCTTT
* *
1650404 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACTAACTTGTGTGGGCTTTAAA
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAA
* * * *
1650469 AGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGTATCCAACTCTTTGAAGG-CTGG
64 AGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTG-AGGACT-A
* * * * * * * *
1650533 GAAGTGCCACCAACTTGTGTAGGCATTAAAAGGAGAAGGCGTCCTACTCTTTGAGGATTGGGAAG
127 GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAA
* *
1650598 TGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAAC
192 TGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAAAGAGCCACCAAC
* * *
1650663 TTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACAAAAGGGTG
257 TTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACAAAAGGGCG
* * * * * *** *
1650710 -AATGGAGAGAGCATCCTGCTTTTTGAGGACT-AGAAGGTGTTGCCAACTTGTGTAGGCTTTGAA
1 AAAAGAAAAG-GCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTGAA
** * * *
1650773 AGGCGTCCCACTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCATACTCTTTGAGCACTAGG
64 AGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTA-G
*
1650838 AAGTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAAT
128 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAAT
* * *
1650903 GCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTGAAAAA-TGCCACCATC
193 GCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT-AAAAAGAGCCACCAAC
*
1650967 TTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCG
257 TTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACAAAAGGGCG
* * * * *
1651014 AAAAGAAAAGGCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGG
1 AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
1651079 GCGTCCTGCTCTTTGAGGACAAAAGGGTGAAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAG
66 GCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAA-
*
1651144 GTGCCGCCAACTTGTGTGGGCTTT
130 GTGCCACCAACTTGTGTGGGCTTT
1651168 GAAAGGCGTC
Statistics
Matches: 388, Mismatches: 62, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
303 6 0.02
304 348 0.90
305 34 0.09
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (303 bp):
AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
GCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAAG
TGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCC
ACCAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAAAGAGCCACCAACTTGT
GTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACAAAAGGGCG
Found at i:1651176 original size:398 final size:398
Alignment explanation
Indices: 1650621--1651348 Score: 1170
Period size: 398 Copynumber: 1.8 Consensus size: 398
1650611 TGTGGGCTTT
* * *
1650621 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGAGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
1 AAAAGGCGTCCTACTCCTTGAGGACTAAAAAGAGCCACCAACTGGTGTGGGCTTTGAAAGGCATC
* * **
1650686 CTGCTCTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTTTTTGAGGACTAGAAGGTGTT
66 CTGCTCTTTGAGGACAAAAGGGTGAAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCC
*
1650751 GCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGC
131 GCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGC
* *
1650816 GTCATACTCTTTGAGCACTAGGAA-GTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGCATC
196 GTCACACTCTTTGAGCACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATC
* * ** *
1650880 CTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
260 CTACTCTTCGAGAACTGGAAAATGCCACCAACTTGCATAGGCTTTAAAAGGCATCCTACTCTTTG
1650945 AGGACTGAAAAATGCCACCATCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAG
325 AGGACTGAAAAATGCCACCATCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAG
1651010 GGCGAAAAG
390 GGCGAAAAG
* * * *
1651019 AAAAGGCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACTGGTGTGGGCTTTGAAGGGCGTC
1 AAAAGGCGTCCTACTCCTTGAGGACTAAAAAGAGCCACCAACTGGTGTGGGCTTTGAAAGGCATC
1651084 CTGCTCTTTGAGGACAAAAGGGTGAAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCC
66 CTGCTCTTTGAGGACAAAAGGGTGAAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCC
* * *
1651149 GCCAACTTGTGTGGGCTTTGAAAGGCGTCCCACTCTTTGAGGACTAAAAGGTGAAAGGAGATAGC
131 GCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGC
* * * * *
1651214 GTCCCGCTCTTTGAGGACTAGAAGGTTCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
196 GTCACACTCTTTGAGCACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCC
* * *
1651279 TGCTCTTCGAGAACTGGAAAATGCCACCAACTTGCATAGGCTTTAAAAGGCGTCCTGCTCTTTGA
261 TACTCTTCGAGAACTGGAAAATGCCACCAACTTGCATAGGCTTTAAAAGGCATCCTACTCTTTGA
1651344 GGACT
326 GGACT
1651349 AAAGGGCAAA
Statistics
Matches: 299, Mismatches: 30, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
397 3 0.01
398 296 0.99
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (398 bp):
AAAAGGCGTCCTACTCCTTGAGGACTAAAAAGAGCCACCAACTGGTGTGGGCTTTGAAAGGCATC
CTGCTCTTTGAGGACAAAAGGGTGAAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCC
GCCAACTTGTGTAGGCTTTGAAAGGCGTCCCACTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGC
GTCACACTCTTTGAGCACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCC
TACTCTTCGAGAACTGGAAAATGCCACCAACTTGCATAGGCTTTAAAAGGCATCCTACTCTTTGA
GGACTGAAAAATGCCACCATCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGG
GCGAAAAG
Found at i:1651321 original size:155 final size:155
Alignment explanation
Indices: 1651108--1651508 Score: 543
Period size: 155 Copynumber: 2.6 Consensus size: 155
1651098 CAAAAGGGTG
* * ** * *
1651108 AAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG
1 AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
* ** * * *
1651173 GCGTCCCACTCTTTGAGGACTAAAAGGTGAAAGGAGATAGCGTCCCGCTCTTTGAGGACTA-GAA
66 GCGTCCTACTCTTTGAGGACTAAAAGGCAAAAGGAGAGAGCGTCCCACTCTTTGAGCACTAGGAA
* *
1651237 GGTTCCACCAACTTGTGTGGGCTTTA
131 -GTGCCACCAACTTGTGGGGGCTTTA
* * ** *
1651263 AAAGGAGAAAGCATCCTGCTCTTCGAGAACTGGAAAATGCCACCAACTTGCATAGGCTTTAAAAG
1 AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
1651328 GCGTCCTGCTCTTTGAGGACTAAAGGGCAAAAGGAGAGGGCGTCCTACTCTTTGAGCACTAGGAA
66 GCGTCCTACTCTTTGAGGACTAAAAGGCAAAAGGAGAGAGCGTCCCACTCTTTGAGCACTAGGAA
1651393 GTGCCACCAACTTGTGGGGGCTTTA
131 GTGCCACCAACTTGTGGGGGCTTTA
* * *
1651418 AAAAGAGAAAGCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1 AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1651483 GCGTCCTACTCTTTGAGGACTGAAAA
66 GCGTCCTACTCTTTGAGGACT-AAAA
1651509 ATGCCACCAA
Statistics
Matches: 211, Mismatches: 33, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
155 205 0.97
156 6 0.03
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (155 bp):
AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
GCGTCCTACTCTTTGAGGACTAAAAGGCAAAAGGAGAGAGCGTCCCACTCTTTGAGCACTAGGAA
GTGCCACCAACTTGTGGGGGCTTTA
Found at i:1651495 original size:55 final size:55
Alignment explanation
Indices: 1651370--1651556 Score: 225
Period size: 55 Copynumber: 3.3 Consensus size: 55
1651360 GGAGAGGGCG
* * *
1651370 TCCTACTCTTTGAGCACTAGG-AAGTGCCACCAACTTGTGGGGGCTTTAAAAAGAGAAAGCA
1 TCCTACTCTTTGAGGAC-AGGAAAATGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCA
*
1651431 TCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * *
1651486 TCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTGT-AAAGGCA
1 TCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
1651540 TCCTACTCTATGAGGAC
1 TCCTACTCTTTGAGGAC
1651557 TAAAGGGCGA
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
54 22 0.19
55 46 0.40
58 2 0.02
59 3 0.03
60 3 0.03
61 40 0.34
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (55 bp):
TCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:1651611 original size:209 final size:211
Alignment explanation
Indices: 1651220--1652253 Score: 1116
Period size: 209 Copynumber: 4.9 Consensus size: 211
1651210 TAGCGTCCCG
* ** *
1651220 CTCTTTGAGGACTAGAAGGTTCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCT
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAA--AG---GCATCCTGCTCT
* * ** * *
1651285 TCGAGAACTGGAAAA-TGCCACCAACTTGCATAGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
60 TTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
* * *
1651349 AAAGGGC-AAAAGGAGAGGGCGTCCTACTCTTTGAGCACT-AGGAAGTGCCACCAACTTGTGGGG
124 AAAGGGCGAAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGA-GAAGTGCCACCAACTTGTGTGG
* *
1651412 GCTTTAAAAAGAGAAAGCATCCTA
188 GCTTTAAAAAGAGAAGGCGTCCTA
* * *
1651436 CTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
* * * *
1651501 ACTGAAAAATGCCACCAACTTGTGTGGGCTGT-AAAGGCATCCTACTCTATGAGGACTAAAGGGC
66 ACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGC
* * * * **
1651565 GAAAAGAAAAG-GCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACGGGTGTGGGCTTT---
131 GAAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAA
* *
1651626 --GA-AGGGCGTCCTG
196 AAGAGAAGGCGTCCTA
* * * *
1651639 CTCTTTAAGGACTGAAAAATGCCACCAACTTGTATGGGCTTCAAAAGGAAAAGGCATCCTGCTCT
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTT------TAAAAGGCATCCTGCTCT
*
1651704 TTGAGGACT-AGAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
60 TTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
* * * *
1651768 AAAGAGCG-AAAGGAGAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGG
124 AAAGGGCGAAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGG
* * *
1651832 CATTAAAAGGAGAAGGCGTCCAA
189 CTTTAAAAAGAGAAGGCGTCCTA
* * * * **
1651855 CTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
* * *
1651920 ACTGAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGCATCCTCCTCTTTGAGGACTAAAGGGC
66 ACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGC
* * *
1651985 -AAAAGGAGAGAGCGTCCTACTCTTTGAAGACTG-GAAGTGCCA-CAATCATGTGTGGGCATTAA
131 GAAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAA-CTTGTGTGGGCTTTAA
*
1652047 AAGGAGAAGGCGTCCTA
195 AAAGAGAAGGCGTCCTA
* * ** * * *
1652064 CTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAA-GCATCCTGCTTTTTGAGG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
* * * * * * * *
1652128 AATGGAAAGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTCCTGCACTTTGAGGACAAAAGGGT
66 ACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGC
* * * *
1652193 G-AATGGAGAGAGCATCCTGCTCTTTGAGGACT-AGAAGGTGCCGCCAACTTGTGTGGGCTTT
131 GAAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAA-GTGCCACCAACTTGTGTGGGCTTT
1652254 GAAAGGCGTC
Statistics
Matches: 700, Mismatches: 93, Indels: 57
0.82 0.11 0.07
Matches are distributed among these distances:
203 44 0.06
204 2 0.00
208 105 0.15
209 231 0.33
210 231 0.33
211 1 0.00
213 2 0.00
215 5 0.01
216 79 0.11
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (211 bp):
CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
ACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGC
GAAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAA
AAGAGAAGGCGTCCTA
Found at i:1651677 original size:55 final size:55
Alignment explanation
Indices: 1651572--1651767 Score: 205
Period size: 55 Copynumber: 3.5 Consensus size: 55
1651562 GGCGAAAAGA
* * * **
1651572 AAAGGCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAACGGGTGTGGGCTTTG
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG
* * * * * *
1651627 AAGGGCGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTATGGGCTTCAAAAGG
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT-----TG
* *
1651687 AAAAGGCATCCTGCTCTTTGAGGACT-AGAAAGTGCCACCAATTTGTGTGGGCTTTA
1 -AAAGGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTG
1651743 AAAGGCATCCTGCTCTTTGAGGACT
1 AAAGGCATCCTGCTCTTTGAGGACT
1651768 AAAGAGCGAA
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
55 70 0.60
60 2 0.02
61 45 0.38
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (55 bp):
AAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG
Found at i:1651798 original size:155 final size:155
Alignment explanation
Indices: 1651631--1651922 Score: 399
Period size: 155 Copynumber: 1.9 Consensus size: 155
1651621 GCTTTGAAGG
* *
1651631 GCGTCCTGCTCTTT-AAGGACTGAAAAATGCCACCAACTTGTATGGGC-TTCAAAAGGAAAAGGC
1 GCGTCCTACTCTTTGAA-GACTGAAAAATGCCACCAACTTGTATAGGCATT-AAAAGGAAAAGGC
** * *
1651694 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
64 ATCCAACTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCT
1651759 TTGAGGACTAAAGAGCGAAAGGAGAGA
129 TTGAGGACTAAAGAGCGAAAGGAGAGA
** * * * *
1651786 GCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGGCATTAAAAGGAGAAGGCGT
1 GCGTCCTACTCTTTGAAGACTGAAAAATGCCACCAACTTGTATAGGCATTAAAAGGAAAAGGCAT
* * * **
1651851 CCAACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTTT
66 CCAACTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
1651916 GAGGACT
131 GAGGACT
1651923 GAAAAGTGCC
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
155 114 0.97
156 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (155 bp):
GCGTCCTACTCTTTGAAGACTGAAAAATGCCACCAACTTGTATAGGCATTAAAAGGAAAAGGCAT
CCAACTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
GAGGACTAAAGAGCGAAAGGAGAGA
Found at i:1651871 original size:61 final size:61
Alignment explanation
Indices: 1651776--1651902 Score: 184
Period size: 61 Copynumber: 2.1 Consensus size: 61
1651766 CTAAAGAGCG
* *
1651776 AAAGGAGAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGGCATTA
1 AAAGGAGAGAGCGTCCAACTCTTTGAAGACTGGGAAGTGCCACCAACTCGTGTAGGCATTA
* * * *
1651837 AAAGGAGA-AGGCGTCCAACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTA
1 AAAGGAGAGA-GCGTCCAACTCTTTGAAGACTGGGAAGTGCCACCAACTCGTGTAGGCATTA
1651898 AAAGG
1 AAAGG
1651903 TGTCCTGCTC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 1 0.02
61 58 0.98
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (61 bp):
AAAGGAGAGAGCGTCCAACTCTTTGAAGACTGGGAAGTGCCACCAACTCGTGTAGGCATTA
Found at i:1651896 original size:419 final size:419
Alignment explanation
Indices: 1651241--1652246 Score: 1226
Period size: 419 Copynumber: 2.4 Consensus size: 419
1651231 CTAGAAGGTT
* * *
1651241 CCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTCGAGAACTGGAAAATGCCAC
1 CCACCAACTTGTGTGGGC-TTAAAAGGA-AAAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCAC
** * * *
1651306 CAACTTGCATAGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGCAAAAGGAGAGGGCGT
64 CAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGT
** * *
1651371 CCTACTCTTTG-AGCACTAGGAAGTGCCACCAACTTGTGGGGGCTTTAAAAAGAGAAAGCATCCT
129 CCTACTCTTTGAAG-ACT-GGAAGTGCCACCAACTTGTGTAGGCATTAAAAAGAGAAAGCATCCA
*
1651435 ACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAG
192 ACTCTTTGAGGACAGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAG
*
1651500 GACTGAAAAATGCCACCAACTTGTGTGGGCTGT-AAAGGCATCCTACTCTATGAGGACTAAAGGG
257 GACTGAAAAATGCCACCAACTTGTATGGGCTGTGAAAGGCATCCTACTCTATGAGGACTAAAGGG
* *
1651564 CGAAAAGAAAAG-GCGTCCTACTCCTTGAGGACTGAAAAGTGCCACCAA-CGGGTGTGGGC-TT-
322 C-AAAAGAAAAGAGCGTCCTACTCCTTGAAGACTG-AAAGTGCCA-CAATCAGGTGTGGGCATTA
* * *
1651625 TGA-AGGGCGTCCTGCTCTTTAAGGACTGAAAAATG
384 GGAGAAGGCGTCCTACTCTTTAAGGACTGAAAAATG
* *
1651660 CCACCAACTTGTATGGGCTTCAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCAC
1 CCACCAACTTGTGTGGGCTT-AAAAGGAAAA-GCATCCTGCTCTTTGAGGACTGGAAAGTGCCAC
* * *
1651725 CAATTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGAGCGAAAGGAGAGAGCGT
64 CAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGT
* * *
1651790 CCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTGTGTAGGCATTAAAAGGAGAAGGCGTCCAA
129 CCTACTCTTTGAAGACT-GGAAGTGCCACCAACTTGTGTAGGCATTAAAAAGAGAAAGCATCCAA
** * * * *
1651855 CTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGG
193 CTCTTTGAGGACAGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGG
* * * *
1651920 ACTGAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGCATCCTCCTCTTTGAGGACTAAAGGGC
258 ACTGAAAAATGCCACCAACTTGTATGGGCTGTGAAAGGCATCCTACTCTATGAGGACTAAAGGGC
* * * * *
1651985 AAAAGGAGAGAGCGTCCTACTCTTTGAAGACTGGAAGTGCCACAATCATGTGTGGGCATTAAAAG
323 AAAAGAAAAGAGCGTCCTACTCCTTGAAGACTGAAAGTGCCACAATCAGGTGTGGGCATT---AG
* * ** **
1652050 GAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTG
385 GAGAAGGCGTCCTACTCTTTAAGGACTGAAAAATG
* * * * *
1652085 CCACCAACTCGTGTAGGCTT-----TAAAAGCATCCTGCTTTTTGAGGAATGGAAAGTGCCACCA
1 CCACCAACTTGTGTGGGCTTAAAAGGAAAAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCA
* * * * * * *
1652145 ACTTGTGTGGGTTTTGAAAGGCGTCCTGCACTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCC
66 ACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCC
* * * *
1652210 TGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGT
131 TACTCTTTGAAGACTGGAA-GTGCCACCAACTTGTGT
1652247 GGGCTTTGAA
Statistics
Matches: 504, Mismatches: 70, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
417 3 0.01
418 124 0.25
419 280 0.56
420 54 0.11
424 2 0.00
425 41 0.08
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (419 bp):
CCACCAACTTGTGTGGGCTTAAAAGGAAAAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCA
ACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCC
TACTCTTTGAAGACTGGAAGTGCCACCAACTTGTGTAGGCATTAAAAAGAGAAAGCATCCAACTC
TTTGAGGACAGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACT
GAAAAATGCCACCAACTTGTATGGGCTGTGAAAGGCATCCTACTCTATGAGGACTAAAGGGCAAA
AGAAAAGAGCGTCCTACTCCTTGAAGACTGAAAGTGCCACAATCAGGTGTGGGCATTAGGAGAAG
GCGTCCTACTCTTTAAGGACTGAAAAATG
Found at i:1651939 original size:55 final size:55
Alignment explanation
Indices: 1651855--1651977 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
1651845 AGGCGTCCAA
* ** * ** *
1651855 CTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTG
1 CTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTAAAAGGCATCCTC
* *
1651910 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGCATCCTC
1 CTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTAAAAGGCATCCTC
1651965 CTCTTTGAGGACT
1 CTCTTTGAGGACT
1651978 AAAGGGCAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (55 bp):
CTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTAAAAGGCATCCTC
Found at i:1652182 original size:55 final size:54
Alignment explanation
Indices: 1652053--1652183 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
1652043 TTAAAAGGAG
* * * *
1652053 AAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTA
1 AAGGCGTCCTGCTCTTTGAGGAATGGAAAGTGCCACCAACTCGTGTAGGCTTTA
* * * * * *
1652107 AAAGCATCCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGTTTTGA
1 AAGGCGTCCTGCTCTTTGAGGAATGGAAAGTGCCACCAACTCGTGTAGGCTTT-A
*
1652162 AAGGCGTCCTGCACTTTGAGGA
1 AAGGCGTCCTGCTCTTTGAGGA
1652184 CAAAAGGGTG
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
54 43 0.69
55 19 0.31
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (54 bp):
AAGGCGTCCTGCTCTTTGAGGAATGGAAAGTGCCACCAACTCGTGTAGGCTTTA
Found at i:1652273 original size:94 final size:94
Alignment explanation
Indices: 1652109--1652353 Score: 355
Period size: 94 Copynumber: 2.6 Consensus size: 94
1652099 AGGCTTTAAA
* * * * * **
1652109 AGCATCCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTCCTGC
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
* *
1652174 ACTTTGAGGACAAAAGGGTGAATGGAGAG
66 ACTTTGAGAACAAAAGGGTGAAAGGAGAG
*
1652203 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
* *
1652268 TCTTTGAGAACTAAAGGGTGAAAGGAGAG
66 ACTTTGAGAACAAAAGGGTGAAAGGAGAG
* * *
1652297 AGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1652354 AGAAAGCATC
Statistics
Matches: 135, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 135 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (94 bp):
AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
ACTTTGAGAACAAAAGGGTGAAAGGAGAG
Found at i:1652383 original size:61 final size:61
Alignment explanation
Indices: 1652288--1652413 Score: 171
Period size: 61 Copynumber: 2.1 Consensus size: 61
1652278 CTAAAGGGTG
* * * * ** * *
1652288 AAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAAAGCATCCTACTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
*
1652349 AAAGGAGAAAGCATCCTGCTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
1 AAAGGAGAAAGCATCCTACTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
1652410 AAAG
1 AAAG
1652414 ACATCCTGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (61 bp):
AAAGGAGAAAGCATCCTACTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
Found at i:1652440 original size:155 final size:155
Alignment explanation
Indices: 1651837--1652128 Score: 255
Period size: 154 Copynumber: 1.9 Consensus size: 155
1651827 GTAGGCATTA
* * * *
1651837 AAAGGAGA-AGGCGTCCAACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAA
1 AAAGGAGAGA-GCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * *
1651901 -G-G--TG--TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGC
65 GGAGAAAGCATCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * *
1651959 ATCCTCCTCTTTGAGGACTAAAGGGCA
129 GTCCTGCTCTTTGAGGACTAAAGGGCG
* * *
1651986 AAAGGAGAGAGCGTCCTACTCTTTGAAGACTG-GAAGTGCCA-CAATCATGTGTGGGCATTAAAA
1 AAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAA-CTTGTGTGGGCTTTAAAA
* * * * * * ** * * *
1652049 GGAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAA-GCA
65 GGAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
*
1652113 TCCTGCTTTTTGAGGA
130 TCCTGCTCTTTGAGGA
1652129 ATGGAAAGTG
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
147 3 0.03
148 24 0.21
149 28 0.24
150 2 0.02
152 1 0.01
153 17 0.15
154 39 0.34
155 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (155 bp):
AAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
GAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
CCTGCTCTTTGAGGACTAAAGGGCG
Found at i:1652492 original size:249 final size:242
Alignment explanation
Indices: 1652046--1652498 Score: 561
Period size: 249 Copynumber: 1.8 Consensus size: 242
1652036 GTGGGCATTA
* * * *
1652046 AAAGGAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAAG
1 AAAGGAGAAGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTAGGCTTTAAAAG
* * * * * * * * * *
1652111 CATCCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTCCTGCAC
66 CATCCTGCTCTTCGAGGAATAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGACATCCTGCAC
* * * *
1652176 TTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAAC
131 TTTGAGGACAAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAAGGTGCCACCAAC
1652241 TTGTGTGGGCTTTGAAAGGCGTCCCACTCTTTGAGAACTAAAGGGTG
196 TTGTGTGGGCTTTGAAAGGCGTCCCACTCTTTGAGAACTAAAGGGTG
* *
1652288 AAAGGAG-AGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAGGAGAAG-GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTAGGCTTT----
1652352 GGAGAAAGCATCCTGCTCTTCGA-GAACTAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGAC
61 --A-AAAGCATCCTGCTCTTCGAGGAA-TAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGAC
* * * * * *
1652416 ATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGGGCGTCCTACTCTTTGTGGACTGGGAA-G
122 ATCCTGCACTTTGAGGACAAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACT-AGAAGG
1652480 TGCCACCAACTTGTGTGGG
186 TGCCACCAACTTGTGTGGG
1652499 GTTTAAAAAG
Statistics
Matches: 175, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
241 2 0.01
242 51 0.29
248 4 0.02
249 115 0.66
250 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (242 bp):
AAAGGAGAAGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTAGGCTTTAAAAG
CATCCTGCTCTTCGAGGAATAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGACATCCTGCAC
TTTGAGGACAAAAGGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAAGGTGCCACCAAC
TTGTGTGGGCTTTGAAAGGCGTCCCACTCTTTGAGAACTAAAGGGTG
Found at i:1652567 original size:27 final size:27
Alignment explanation
Indices: 1652537--1652622 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
1652527 TGAGGACTGG
1652537 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
* ** ** * * * **
1652564 AAAAGGCGTCCTGCTCTTTGAGGACTGA
1 AAAATGCCACCAACT-TGTGTGGGCTTT
1652592 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
1652619 AAAA
1 AAAA
1652623 GGCATCCTGC
Statistics
Matches: 38, Mismatches: 20, Indels: 2
0.63 0.33 0.03
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAATGCCACCAACTTGTGTGGGCTTT
Found at i:1652596 original size:55 final size:55
Alignment explanation
Indices: 1652456--1652644 Score: 234
Period size: 55 Copynumber: 3.3 Consensus size: 55
1652446 GGAGAGGGCG
* * * *
1652456 TCCTACTCTTTGTGGACTGGGAAGTGCCACCAACTTGTGTGGGGTTTAAAAAGAGAAAGCA
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCA
* *
1652517 TCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* *
1652572 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* *
1652627 TCCTGCTCTATGAGGACT
1 TCCTACTCTTTGAGGACT
1652645 AAAGGGCGAA
Statistics
Matches: 117, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
55 70 0.60
58 2 0.02
59 3 0.03
61 42 0.36
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (55 bp):
TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:1652606 original size:210 final size:210
Alignment explanation
Indices: 1652292--1654635 Score: 1304
Period size: 210 Copynumber: 11.0 Consensus size: 210
1652282 AGGGTGAAAG
* * *
1652292 GAGAGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGA
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG-
* * * * *
1652357 AAGCATCCTGCTCTTCGAGAACTAGAAAA-TGCCACCAACTTCTGTAGGCTTTAAAAGACATCCT
62 --GCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
* *
1652421 GCTCTTTGAGGACTAAAGGGCGAAAGGAGAGGGCGTCCTACTCTTTGTGGACTGGGAAGTGCCAC
124 GCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCAC
**
1652486 CAACTTGTGTGGGGTTTAAAAA
189 CAACTTGTGTGGGCATTAAAAA
* * * *
1652508 GAGAAAGCATCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* *
1652573 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTAT
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
** * * ** * *
1652638 GAGGACTAAAGGGCGAAAAAAGA-AGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAGCTG
131 GAGGACTAAAGGGCGAAAGGAGAGA-GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTT
**
1652702 GTGTGGGC-TT-TGAA
195 GTGTGGGCATTAAAAA
* * * * *
1652716 G-G---GCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGGGCTTTAAAACGAAA
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------AAA
*
1652777 AGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
60 AGGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
* * *
1652842 ACTTTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTATTCTTTGAAGG--TAGGGAAGTGCC
124 GCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTG-AGGACT-GGGAAGTGCC
* *
1652905 ACCAACTTGTGTAGGCATTAAAAG
187 ACCAACTTGTGTGGGCATTAAAAA
* * * * * **
1652929 GAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* * * *
1652994 CCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGCATCCTCCTCTTT
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
* * *
1653059 GAGGACTAAAGGGCAAAAGGAGAGAGCGTCCTACTCTTTGAAGACT-GGAAGTGCCA-CAATCAT
131 GAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAA-CTT
*
1653122 GTGTGGGCATTAAAAG
195 GTGTGGGCATTAAAAA
* * * * * *
1653138 GAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAA-GCAT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* * * * * *
1653202 CCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCACTTT
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
* * * * * * *
1653267 GAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTTTGAGGACT-AGAAGGTGCCGCCAACTT
131 GAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTT
*
1653331 GTGTGGGC-TT----T
195 GTGTGGGCATTAAAAA
* * * * ** * * *
1653342 GA-AAGGCGTCCCACTCTTTGAGAACT--AAAGGGTGA--AA-----G-GAG-----AGA-GCGT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* *
1653390 CCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCAT-CT
66 CCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG---GCATCCT
* * ** * * * * *
1653453 GCTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGACATCCTGCTCTTTGAG
124 GCTCTTTGAGGACT--AAAGGGCGA--AA-----GGA-G-----AGAG-CGTCCTACTCTTTGAG
* ** * * *
1653518 GACTAAAGGGCGAAAGGAGAGGGCGTCCTACTCTTTGT-GG-ACT-----
173 GACT-------G---GGA-AGTGCCACCAACT-TGTGTGGGCATTAAAAA
* * ** * * ** ** * * * * **
1653561 GGGAAGTGCCACCAACT-TGTGTGGGGTTTAAAAAGAGAAAGCATCCTACTT-TTTGAGGACTGG
1 GAGAA-AGCGTCCTACTCT-T-TGAGGACTGGAAAGTG---CCA-CCAACTTGTGTG-GG-CTTT
* ** * * * * ** ** * * * ** *
1653624 AAAATGCCA-CCAACT-TGTGTGGGCTTTAAAAG-GCGTCCTGCTCTTTGAGGACTGAAAAATGC
57 AAAA-GGCATCCTGCTCTTTGAGGAC-TGAAAAGTGCCACCAACT-TGTGTGGGCTTTAAAA-GG
** * ** * *
1653686 CA-CC--AAC-TTG-TG--T---GGGCTTTAA--A-AG-GCATCCTACTCTATGAGGACTAAAGG
118 CATCCTGCTCTTTGAGGACTAAAGGGC-GAAAGGAGAGAGCGTCCTACTCTTTGAGGACT----G
* ** ** ** *
1653737 GCGAAAAAAGAAGGCGTCCTGCTCCT-TGAGG-ACTGAAAAGTGCCACCA
178 G-G----AAG--TGCCACCAACTTGTGTG-GGCA-T-TAAA-----A--A
* * * * * * *
1653785 GCTGGTGTGGGCTTTGAAGGGCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGG
1 --------GAG----AAA--GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGG
*
1653850 GCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCT
52 GCTTT------AAAAGGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCT
* * *
1653915 TTAAAAGGCATCCTACTTTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTATTCTTTGAAGG
110 TTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTG-AGG
* *
1653980 --TAGGGAAGTGCCACCAACTTGTGTAGGCATTAAAAG
174 ACT-GGGAAGTGCCACCAACTTGTGTGGGCATTAAAAA
* * * * *
1654016 GAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCAT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
*
1654081 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
* *
1654146 GAGGACTAAAGAGCGAAAGGAGAGAGCGTCCTACTCTTTGAAGACTGGGAAGTGCCACCAACTTG
131 GAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTG
* *
1654211 TGTAGGCATTAAAAG
196 TGTGGGCATTAAAAA
* * * * * **
1654226 GAGAAGGCGTCCAACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
** * * *
1654291 CCTGCTCTTTGAGGACTGAAAAGTTTCACCAACTTGTATGGGCTTTGAAAGGCATCCTCCTCTTT
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
* * *
1654356 GAGGACTAAAGGGCAAAAGGAGAGAGCGTCCTACTCTTTGAAGACT-GGAAGTGCCA-CAATCAT
131 GAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAA-CTT
*
1654419 GTGTGGGCATTAAAAG
195 GTGTGGGCATTAAAAA
* * * * * *
1654435 GAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAA-GCAT
1 GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* * * * * *
1654499 CCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCACTTT
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
* * * * * * *
1654564 GAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTTTGAGGACT-AGAAGGTGCCGCCAACTT
131 GAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTT
1654628 GTGTGGGC
195 GTGTGGGC
1654636 TTTGAAAGGC
Statistics
Matches: 1662, Mismatches: 303, Indels: 333
0.72 0.13 0.14
Matches are distributed among these distances:
188 45 0.03
189 2 0.00
191 2 0.00
193 13 0.01
194 4 0.00
195 5 0.00
197 1 0.00
199 2 0.00
201 4 0.00
202 2 0.00
203 22 0.01
204 47 0.03
205 1 0.00
207 2 0.00
208 218 0.13
209 231 0.14
210 540 0.32
211 149 0.09
212 7 0.00
213 4 0.00
214 1 0.00
215 3 0.00
216 50 0.03
217 82 0.05
219 3 0.00
220 16 0.01
221 13 0.01
222 4 0.00
223 2 0.00
224 5 0.00
226 2 0.00
227 3 0.00
230 1 0.00
231 2 0.00
232 12 0.01
233 6 0.00
235 3 0.00
236 13 0.01
237 19 0.01
238 30 0.02
239 16 0.01
240 3 0.00
241 7 0.00
242 18 0.01
243 16 0.01
244 3 0.00
245 1 0.00
246 4 0.00
247 4 0.00
248 1 0.00
249 3 0.00
250 12 0.01
251 3 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (210 bp):
GAGAAAGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
GAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTG
TGTGGGCATTAAAAA
Found at i:1652622 original size:28 final size:28
Alignment explanation
Indices: 1652537--1652622 Score: 68
Period size: 28 Copynumber: 3.1 Consensus size: 28
1652527 TGAGGACTGG
1652537 AAAATGCCACCAACTTGTGTGGGCTTT-
1 AAAATGCCACCAACTTGTGTGGGCTTTA
* ** ** * * * *
1652564 AAAAGGCGTCCTGCTCTTTGAGGAC-TGA
1 AAAATGCCACCAACT-TGTGTGGGCTTTA
1652592 AAAATGCCACCAACTTGTGTGGGCTTTA
1 AAAATGCCACCAACTTGTGTGGGCTTTA
1652620 AAA
1 AAA
1652623 GGCATCCTGC
Statistics
Matches: 38, Mismatches: 18, Indels: 5
0.62 0.30 0.08
Matches are distributed among these distances:
27 17 0.45
28 21 0.55
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (28 bp):
AAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:1652727 original size:94 final size:94
Alignment explanation
Indices: 1652566--1652738 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 94
1652556 TGGGCTTTAA
* *
1652566 AAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
1 AAGGCGTCCTGCTCCTTGAGGACTGAAAAATGCCACCAACTGGTGTGGGCTTTAAAAGGCATCCT
*
1652631 GCTCTATGAGGACTAAAGGGCGAAAAAAG
66 GCTCTATAAGGACTAAAGGGCGAAAAAAG
* * * * *
1652660 AAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAGCTGGTGTGGGCTTTGAAGGGCGTCCT
1 AAGGCGTCCTGCTCCTTGAGGACTGAAAAATGCCACCAACTGGTGTGGGCTTTAAAAGGCATCCT
*
1652725 GCTCTTTAAGGACT
66 GCTCTATAAGGACT
1652739 GGAAAATACC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 70 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (94 bp):
AAGGCGTCCTGCTCCTTGAGGACTGAAAAATGCCACCAACTGGTGTGGGCTTTAAAAGGCATCCT
GCTCTATAAGGACTAAAGGGCGAAAAAAG
Found at i:1652826 original size:62 final size:58
Alignment explanation
Indices: 1652655--1652834 Score: 190
Period size: 55 Copynumber: 3.1 Consensus size: 58
1652645 AAAGGGCGAA
* * *
1652655 AAAAG-AAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAGCTGGTGTGGGCTTT
1 AAAAGAAAGGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
1652713 ----GAAGGGCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGGGCTTT
1 AAAAGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT
*
1652768 AAAACGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAA-G-AAAGGCGTCCTGCTCTTTGAGGACT-GAAA-GTGCCACCAACTTGTGTGGGCTTT
1652830 AAAAG
1 AAAAG
1652835 GCATCCTACT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
54 1 0.01
55 43 0.44
56 1 0.01
60 1 0.01
61 27 0.28
62 25 0.26
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (58 bp):
AAAAGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:1652850 original size:56 final size:55
Alignment explanation
Indices: 1652660--1652856 Score: 189
Period size: 55 Copynumber: 3.5 Consensus size: 55
1652650 GCGAAAAAAG
* * * * *
1652660 AAGGCGTCCTGCTCCTTGAGGACT-GAAAAGTGCCACCAGCTGGTGTGGGCTTTGA
1 AAGGCATCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAA
* * * * * * *
1652715 AGGGCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGGGCTTTAAAACGAA
1 AAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT------AA
1652776 AAGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAA
1 AAGGCATCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAA
* *
1652832 AAGGCATCCTACTTTTTGAGGACTA
1 AAGGCATCCTGCTCTTTGAGGACTA
1652857 AAGGGCGAAA
Statistics
Matches: 116, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
55 43 0.37
56 26 0.22
61 26 0.22
62 21 0.18
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (55 bp):
AAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAA
Found at i:1652960 original size:61 final size:59
Alignment explanation
Indices: 1652864--1653030 Score: 173
Period size: 61 Copynumber: 2.8 Consensus size: 59
1652854 CTAAAGGGCG
* *
1652864 AAAGGAGAGAGCGTCCTATTCTTTGAAGG-TAGGGAAGTGCCACCAACTTGTGTAGGCATTA
1 AAAGGAGAG-GC-TCCTACTCTTTG-AGGATTGGGAAGTGCCACCAACTTGTGTAGGCATTA
* * *
1652925 AAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTA
1 AAAGGAG-AGGC-TCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTAGGCATTA
* * **
1652986 AAA-G-G-TG-TCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGT
1 AAAGGAGAGGCTCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTTGT
1653031 ATGGGCTTTG
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
55 34 0.37
57 1 0.01
59 1 0.01
60 4 0.04
61 51 0.55
62 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (59 bp):
AAAGGAGAGGCTCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTAGGCATTA
Found at i:1653022 original size:55 final size:55
Alignment explanation
Indices: 1652932--1653065 Score: 187
Period size: 55 Copynumber: 2.4 Consensus size: 55
1652922 TTAAAAGGAG
* ** *
1652932 AAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAA
1 AAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTAA
** * *
1652987 AAGGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTATGGGCTTTGA
1 AAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTAA
*
1653042 AAGGCATCCTCCTCTTTGAGGACT
1 AAGGCATCCTACTCTTTGAGGACT
1653066 AAAGGGCAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (55 bp):
AAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTAA
Found at i:1653090 original size:421 final size:420
Alignment explanation
Indices: 1652290--1653334 Score: 1274
Period size: 421 Copynumber: 2.5 Consensus size: 420
1652280 AAAGGGTGAA
* *
1652290 AGGAG-AGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AGGAGAAG-GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G
* * * * * *
1652354 AGAAAGCATCCTGCTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGACATC
64 A-AAAGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATC
* *
1652419 CTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGGGCGTCCTACTCTTTG-TGGACTGGGAAGTGC
128 CTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAAGGAC-GGGAAGTGC
* ** *
1652483 CACCAACTTGTGTGGGGTTTAAAAAGAGAAAGCATCCTACTTTTTGAGGACTGGAAAATGCCACC
192 CACCAACTTGTGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACC
* * *
1652548 AACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTG
257 AACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTATG
* *
1652613 GGCTTTAAAAGGCATCCTGCTCTATGAGGACTAAAGGGCGAAAAAAGAAGGCGTCCTGCTCCTTG
322 GGCTTTAAAAGGCATCCTCCTCTATGAGGACTAAAGGGCGAAAAAAGAAGGCGTCCTACTCCTTG
* *
1652678 AGGACTGAAAAGTGCCACCAGC-TGGTGTGGGC-TT
387 AAGACTG-AAAGTGCCACAAGCAT-GTGTGGGCATT
* * * * * * *
1652712 -TGA-AGGGCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGGGCTTTAAAACGA
1 AGGAGAAGGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GA
1652775 AAAGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATC
65 AAA-GCATCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATC
* * *
1652840 CTACTTTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTATTCTTTGAAGGTA-GGGAAGTGC
128 CTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAAGG-ACGGGAAGTGC
* * * * *
1652904 CACCAACTTGTGTAGGCATTAAAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACC
192 CACCAACTTGTGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACC
* *
1652969 AACTCGTGTGGGCTTTAAAAGGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTATG
257 AACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTATG
* * * *
1653034 GGCTTTGAAAGGCATCCTCCTCTTTGAGGACTAAAGGGC--AAAAGGAGAGAGCGTCCTACTCTT
322 GGCTTTAAAAGGCATCCTCCTCTATGAGGACTAAAGGGCGAAAAAAGA-AG-GCGTCCTACTCCT
* *
1653097 TGAAGACTGGAAGTGCCACAATCATGTGTGGGCATT
385 TGAAGACTGAAAGTGCCACAAGCATGTGTGGGCATT
* * * * *
1653133 AAAAGGAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTT----
1 ---AGGAGAAGGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * * *
1653194 -AAAAGCATCCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
63 GAAAAGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATC
* * * * * * **
1653258 CTGCACTTTGAGGACAAAAGGGTGAATGGAGAGAGCATCCTGCTCTTTG-AGGACTAGAAGGTGC
128 CTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAAGGACGGGAA-GTGC
*
1653322 CGCCAACTTGTGT
192 CACCAACTTGTGT
1653335 GGGCTTTGAA
Statistics
Matches: 533, Mismatches: 74, Indels: 36
0.83 0.12 0.06
Matches are distributed among these distances:
416 1 0.00
417 6 0.01
418 88 0.17
419 32 0.06
420 98 0.18
421 261 0.49
422 2 0.00
423 1 0.00
425 2 0.00
426 42 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (420 bp):
AGGAGAAGGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAA
AAGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
CTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAAGGACGGGAAGTGCCACC
AACTTGTGTAGGCATTAAAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACT
CGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTATGGGCT
TTAAAAGGCATCCTCCTCTATGAGGACTAAAGGGCGAAAAAAGAAGGCGTCCTACTCCTTGAAGA
CTGAAAGTGCCACAAGCATGTGTGGGCATT
Found at i:1653246 original size:54 final size:55
Alignment explanation
Indices: 1653154--1653271 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 55
1653144 GCGTCCTACT
* * * *
1653154 CTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTT-AAAAGCATCCTGCT
1 CTTTGAGGAATGGAAAGTGCCACCAACTCGTGTAGGCTTTGAAAAGCATCCTGCA
* * * * *
1653208 TTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCA
1 CTTTGAGGAATGGAAAGTGCCACCAACTCGTGTAGGCTTTGAAAAGCATCCTGCA
1653263 CTTTGAGGA
1 CTTTGAGGA
1653272 CAAAAGGGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
54 34 0.64
55 19 0.36
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (55 bp):
CTTTGAGGAATGGAAAGTGCCACCAACTCGTGTAGGCTTTGAAAAGCATCCTGCA
Found at i:1653361 original size:94 final size:94
Alignment explanation
Indices: 1653197--1653441 Score: 364
Period size: 94 Copynumber: 2.6 Consensus size: 94
1653187 AGGCTTTAAA
* * * * **
1653197 AGCATCCTGCTTTTTGAGGAATGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
* *
1653262 ACTTTGAGGACAAAAGGGTGAATGGAGAG
66 ACTTTGAGAACAAAAGGGTGAAAGGAGAG
*
1653291 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
* *
1653356 TCTTTGAGAACTAAAGGGTGAAAGGAGAG
66 ACTTTGAGAACAAAAGGGTGAAAGGAGAG
* * *
1653385 AGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1653442 AGAAAGCATC
Statistics
Matches: 136, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 136 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (94 bp):
AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCCAC
ACTTTGAGAACAAAAGGGTGAAAGGAGAG
Found at i:1653470 original size:60 final size:61
Alignment explanation
Indices: 1653376--1653500 Score: 162
Period size: 60 Copynumber: 2.1 Consensus size: 61
1653366 CTAAAGGGTG
* * * * ** * *
1653376 AAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAAAGCATCCTACTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
*
1653437 AAAGGAGAAAGCAT-CTGCTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
1 AAAGGAGAAAGCATCCTACTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
1653497 AAAG
1 AAAG
1653501 ACATCCTGCT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
60 43 0.78
61 12 0.22
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (61 bp):
AAAGGAGAAAGCATCCTACTCTTCGAGAACTAGAAAATGCCACCAACTTCTGTAGGCTTTA
Found at i:1653527 original size:154 final size:155
Alignment explanation
Indices: 1652925--1653216 Score: 246
Period size: 154 Copynumber: 1.9 Consensus size: 155
1652915 GTAGGCATTA
* * * *
1652925 AAAGGAGA-AGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAA
1 AAAGGAGAGA-GCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * *
1652989 -G-G--TG--TCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTATGGGCTTTGAAAGGC
65 GGAGAAAGCATCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * *
1653047 ATCCTCCTCTTTGAGGACTAAAGGGCA
129 GTCCTGCTCTTTGAGGACTAAAGGGCG
* * *
1653074 AAAGGAGAGAGCGTCCTACTCTTTGAAGACTG-GAAGTGCCA-CAATCATGTGTGGGCATTAAAA
1 AAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAA-CTTGTGTGGGCTTTAAAA
* * * * * * ** * * *
1653137 GGAGAAGGCGTCCTACTCTTTGAGGATTGGGATGTGCCACCAACTCGTGTAGGCTTTAAAA-GCA
65 GGAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
*
1653201 TCCTGCTTTTTGAGGA
130 TCCTGCTCTTTGAGGA
1653217 ATGGAAAGTG
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
147 3 0.03
148 24 0.21
149 28 0.24
150 2 0.02
152 1 0.01
153 17 0.15
154 40 0.34
155 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (155 bp):
AAAGGAGAGAGCGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
GAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
CCTGCTCTTTGAGGACTAAAGGGCG
Found at i:1653654 original size:27 final size:27
Alignment explanation
Indices: 1653624--1653709 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
1653614 TGAGGACTGG
1653624 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
* ** ** * * * **
1653651 AAAAGGCGTCCTGCTCTTTGAGGACTGA
1 AAAATGCCACCAACT-TGTGTGGGCTTT
1653679 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
1653706 AAAA
1 AAAA
1653710 GGCATCCTAC
Statistics
Matches: 38, Mismatches: 20, Indels: 2
0.63 0.33 0.03
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAATGCCACCAACTTGTGTGGGCTTT
Found at i:1653683 original size:55 final size:55
Alignment explanation
Indices: 1653543--1653731 Score: 243
Period size: 55 Copynumber: 3.3 Consensus size: 55
1653533 GGAGAGGGCG
* * * *
1653543 TCCTACTCTTTGTGGACTGGGAAGTGCCACCAACTTGTGTGGGGTTTAAAAAGAGAAAGCA
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCA
* *
1653604 TCCTACTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* *
1653659 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
1653714 TCCTACTCTATGAGGACT
1 TCCTACTCTTTGAGGACT
1653732 AAAGGGCGAA
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
55 69 0.59
58 2 0.02
59 3 0.03
61 42 0.36
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (55 bp):
TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:1653709 original size:28 final size:28
Alignment explanation
Indices: 1653624--1653709 Score: 68
Period size: 28 Copynumber: 3.1 Consensus size: 28
1653614 TGAGGACTGG
1653624 AAAATGCCACCAACTTGTGTGGGCTTT-
1 AAAATGCCACCAACTTGTGTGGGCTTTA
* ** ** * * * *
1653651 AAAAGGCGTCCTGCTCTTTGAGGAC-TGA
1 AAAATGCCACCAACT-TGTGTGGGCTTTA
1653679 AAAATGCCACCAACTTGTGTGGGCTTTA
1 AAAATGCCACCAACTTGTGTGGGCTTTA
1653707 AAA
1 AAA
1653710 GGCATCCTAC
Statistics
Matches: 38, Mismatches: 18, Indels: 5
0.62 0.30 0.08
Matches are distributed among these distances:
27 17 0.45
28 21 0.55
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (28 bp):
AAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:1653824 original size:94 final size:94
Alignment explanation
Indices: 1653653--1653825 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
1653643 TGGGCTTTAA
* *
1653653 AAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
1 AAGGCGTCCTGCTCCTTGAGGACTGAAAAATGCCACCAACTGGTGTGGGCTTTAAAAGGCATCCT
*
1653718 ACTCTATGAGGACTAAAGGGCGAAAAAAG
66 ACTCTATAAGGACTAAAGGGCGAAAAAAG
* * * * *
1653747 AAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAGCTGGTGTGGGCTTTGAAGGGCGTCCT
1 AAGGCGTCCTGCTCCTTGAGGACTGAAAAATGCCACCAACTGGTGTGGGCTTTAAAAGGCATCCT
* *
1653812 GCTCTTTAAGGACT
66 ACTCTATAAGGACT
1653826 GGAAAATACC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 69 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (94 bp):
AAGGCGTCCTGCTCCTTGAGGACTGAAAAATGCCACCAACTGGTGTGGGCTTTAAAAGGCATCCT
ACTCTATAAGGACTAAAGGGCGAAAAAAG
Found at i:1653913 original size:62 final size:59
Alignment explanation
Indices: 1653747--1653922 Score: 191
Period size: 55 Copynumber: 3.0 Consensus size: 59
1653737 GCGAAAAAAG
* * *
1653747 AAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAGCTGGTGTGGGCTTT-----GA
1 AAGGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * * * *
1653802 AGGGCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGGGCTTTAAAAGGAA
1 AAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-A
*
1653863 AAGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AAGGCGTCCTGCTCTTTGAGGACT-GAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGG
1653923 CATCCTACTT
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
55 43 0.44
56 1 0.01
60 1 0.01
61 26 0.27
62 27 0.28
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (59 bp):
AAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
Found at i:1653937 original size:56 final size:55
Alignment explanation
Indices: 1653747--1653943 Score: 189
Period size: 55 Copynumber: 3.5 Consensus size: 55
1653737 GCGAAAAAAG
* * * * *
1653747 AAGGCGTCCTGCTCCTTGAGGACT-GAAAAGTGCCACCAGCTGGTGTGGGCTTTGA
1 AAGGCATCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAA
* * * * * * *
1653802 AGGGCGTCCTGCTCTTTAAGGACTGGAAAATACCACCAACTTGTATGGGCTTTAAAAGGAA
1 AAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT------AA
1653863 AAGGCATCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAA
1 AAGGCATCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAA
* *
1653919 AAGGCATCCTACTTTTTGAGGACTA
1 AAGGCATCCTGCTCTTTGAGGACTA
1653944 AAGGGCGAAA
Statistics
Matches: 116, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
55 43 0.37
56 26 0.22
61 26 0.22
62 21 0.18
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (55 bp):
AAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAA
Found at i:1654047 original size:61 final size:60
Alignment explanation
Indices: 1653951--1654132 Score: 180
Period size: 61 Copynumber: 3.1 Consensus size: 60
1653941 CTAAAGGGCG
* * * *
1653951 AAAGGAG-AGAGCGTCCTATTCTTTGAAGG-TAGGGAAGTGCCACCAACTTGTGTAGGCATTA
1 AAAGGAGAAG-GCATCCTACTCTTTG-AGGATTGGGAAGTGCCACCAACTTGTGTGGGC-TTA
*
1654012 AAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTCGTGTGGGCTT-
1 AAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTA
* * * ** *
1654071 -TA--A-AAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAATTTGTGTGGGCTTTA
1 AAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGC-TTA
1654128 AAAGG
1 AAAGG
1654133 CATCCTGCTC
Statistics
Matches: 101, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
55 44 0.44
56 3 0.03
58 2 0.02
60 5 0.05
61 45 0.45
62 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (60 bp):
AAAGGAGAAGGCATCCTACTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTA
Done.