Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4432388
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 63034 characters in sequence are not A, C, G, or T
File 14 of 27
Found at i:1967910 original size:13 final size:13
Alignment explanation
Indices: 1967892--1967917 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1967882 TACACAAAGT
1967892 ATGTATCGATACA
1 ATGTATCGATACA
1967905 ATGTATCGATACA
1 ATGTATCGATACA
1967918 CCAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1967915 original size:32 final size:33
Alignment explanation
Indices: 1967874--1967937 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
1967864 TAGCCAAACT
**
1967874 TGTATCGATACA-CAAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAAATGTATCGATACAA
1967906 TGTATCGATACACCAAAAAATGTATCGATACA
1 TGTATCGATACACCAAAAAATGTATCGATACA
1967938 TTGGCTTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (33 bp):
TGTATCGATACACCAAAAAATGTATCGATACAA
Found at i:1969284 original size:16 final size:15
Alignment explanation
Indices: 1969263--1969301 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
1969253 TAAATAATTA
* *
1969263 TTAATTGAGTATATAT
1 TTAATTAAGT-TATAC
1969279 TTAATTAAGTTATAC
1 TTAATTAAGTTATAC
1969294 TTAATTAA
1 TTAATTAA
1969302 ATCTCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (15 bp):
TTAATTAAGTTATAC
Found at i:1972700 original size:15 final size:15
Alignment explanation
Indices: 1972680--1972714 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
1972670 AACCATCAAA
1972680 GATGATGAAGATAAT
1 GATGATGAAGATAAT
*
1972695 GATGATGATGATAAT
1 GATGATGAAGATAAT
1972710 GATGA
1 GATGA
1972715 AGTTGACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
GATGATGAAGATAAT
Found at i:1979822 original size:19 final size:19
Alignment explanation
Indices: 1979794--1979850 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
1979784 TTGTATCGAT
* *
1979794 ACATTATATCGATACATGT
1 ACATTGTATCGATACATGC
* *
1979813 TCATTGTATCAATACATGC
1 ACATTGTATCGATACATGC
*
1979832 ACAATTGTATTGATACATG
1 AC-ATTGTATCGATACATG
1979851 AAACTGGCAG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:1981095 original size:20 final size:20
Alignment explanation
Indices: 1981070--1981123 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
1981060 AAACCCTTGT
*
1981070 ATGTATTGATACATATCCGG
1 ATGTATCGATACATATCCGG
1981090 ATGTATCGATACATATCCGG
1 ATGTATCGATACATATCCGG
1981110 ATGTATCGATACAT
1 ATGTATCGATACAT
1981124 TATGCTTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATATCCGG
Found at i:1981148 original size:13 final size:13
Alignment explanation
Indices: 1981130--1981156 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1981120 ACATTATGCT
1981130 TTGTATCGATACA
1 TTGTATCGATACA
1981143 TTGTATCGATACA
1 TTGTATCGATACA
1981156 T
1 T
1981157 GTTCATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1981192 original size:20 final size:19
Alignment explanation
Indices: 1981140--1981196 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
1981130 TTGTATCGAT
*
1981140 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGC
* * *
1981159 TCATTGTTTTGATACATGC
1 ACATTGTATCGATACATGC
1981178 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1981197 AAATTGGTAG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:1981257 original size:20 final size:20
Alignment explanation
Indices: 1981232--1981282 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
1981222 TGTTTATATT
*
1981232 GATACATTGTACGTTGTATC
1 GATACATTGTACATTGTATC
* *
1981252 GATACATGGCACATTGTATC
1 GATACATTGTACATTGTATC
1981272 GATACATTGTA
1 GATACATTGTA
1981283 TCGATGCATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (20 bp):
GATACATTGTACATTGTATC
Found at i:1981280 original size:13 final size:13
Alignment explanation
Indices: 1981262--1981287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1981252 GATACATGGC
1981262 ACATTGTATCGAT
1 ACATTGTATCGAT
1981275 ACATTGTATCGAT
1 ACATTGTATCGAT
1981288 GCATGAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:1981287 original size:33 final size:32
Alignment explanation
Indices: 1981245--1981314 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 32
1981235 ACATTGTACG
1981245 TTGTATCGATACATG-GCACATTGTATCGATACA
1 TTGTATCGATACATGAG-A-ATTGTATCGATACA
*
1981278 TTGTATCGATGCATGAAGAATTGTATCGATACA
1 TTGTATCGATACATG-AGAATTGTATCGATACA
1981311 TTGT
1 TTGT
1981315 CCCAAACGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
33 32 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACATGAGAATTGTATCGATACA
Found at i:1986934 original size:36 final size:36
Alignment explanation
Indices: 1986893--1986964 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
1986883 GGTGAAAGAC
* *
1986893 TATCGGATGAATCGCTCGTCCTATAAGTCTCGGGTG
1 TATCGGACGAATCGCTCATCCTATAAGTCTCGGGTG
*
1986929 TATCGGACGAATTGCTCATCCTATAAGTCTCGGGTG
1 TATCGGACGAATCGCTCATCCTATAAGTCTCGGGTG
1986965 GTCATTACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (36 bp):
TATCGGACGAATCGCTCATCCTATAAGTCTCGGGTG
Found at i:1987988 original size:28 final size:28
Alignment explanation
Indices: 1987925--1987990 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
1987915 AAAGTCGAGG
* *
1987925 TTGAAGTATCCCCTCAGAAATAACGGGG
1 TTGAAGTATCCCCTCAGAAATAACAGGA
* * *
1987953 TTGGAGTATCCCC-GATGAAATAATAGGA
1 TTGAAGTATCCCCTCA-GAAATAACAGGA
1987981 TTGAAGTATC
1 TTGAAGTATC
1987991 TTCGATTGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (28 bp):
TTGAAGTATCCCCTCAGAAATAACAGGA
Found at i:1988048 original size:51 final size:51
Alignment explanation
Indices: 1987974--1988094 Score: 183
Period size: 51 Copynumber: 2.4 Consensus size: 51
1987964 CCGATGAAAT
* **
1987974 AATAGGA-TTGAAGTATCTTCGATTGTGAAAAATTGATGTTTTAGAAATAA
1 AATAGGAGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAA
*
1988024 GATCA-GAGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAA
1 AAT-AGGAGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAA
1988075 AATAGGAGTTGGAGTATCCC
1 AATAGGAGTTGGAGTATCCC
1988095 TTTGGAAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
50 5 0.08
51 58 0.92
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (51 bp):
AATAGGAGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAA
Found at i:1988169 original size:51 final size:50
Alignment explanation
Indices: 1988095--1988223 Score: 136
Period size: 51 Copynumber: 2.6 Consensus size: 50
1988085 GGAGTATCCC
*
1988095 TTTGGAAAT--AACGGGGTTAGAGTATCCACGACGATGGAAAATCGATGT
1 TTTGGAAATAAAACGGGGTTAGAGTATCCACAACGATGGAAAATCGATGT
* * ** *
1988143 TTTGGAAATAAAACTGGGGTTGGAGTATCCCCAATTATGGAAAATTGATGT
1 TTTGGAAATAAAAC-GGGGTTAGAGTATCCACAACGATGGAAAATCGATGT
** * *
1988194 TTTATAAATAAAACCAGGATTAGAGTATCC
1 TTTGGAAATAAAA-CGGGGTTAGAGTATCC
1988224 CCTTGGAAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
48 9 0.14
50 3 0.05
51 53 0.80
52 1 0.02
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (50 bp):
TTTGGAAATAAAACGGGGTTAGAGTATCCACAACGATGGAAAATCGATGT
Found at i:1988187 original size:130 final size:130
Alignment explanation
Indices: 1988031--1988336 Score: 443
Period size: 130 Copynumber: 2.4 Consensus size: 130
1988021 TAAGATCAGA
* *
1988031 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAA-TAGGAGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAGGA-TTAGAGTATCCC
* *
1988095 TTTGGAAATAACGGGGTTAGAGTATCCACGACGATGGAAAATCGATGTTTTGGAAATAAAACTGG
65 CTTGGAAATAACGGGGTTAGAGTATCCACGACGATGGAAAATCGATGTTTTGAAAATAAAACTGG
1988160 G
130 G
* * * *
1988161 GTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTATAAATAAAACCAGGATTAGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAGGATTAGAGTATCCCC
* * ** * *
1988226 TTGGAAATAACGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGAAAATAAAACTGGG
66 TTGGAAATAACGGGGTTAGAGTATCCACGACGATGGAAAATCGATGTTTTGAAAATAAAACTGGG
* * *
1988291 GTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTGGAAATAAAA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAA
1988337 ACATGAATGA
Statistics
Matches: 154, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
130 150 0.97
131 4 0.03
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (130 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAGGATTAGAGTATCCCC
TTGGAAATAACGGGGTTAGAGTATCCACGACGATGGAAAATCGATGTTTTGAAAATAAAACTGGG
Found at i:1988241 original size:79 final size:81
Alignment explanation
Indices: 1988144--1988304 Score: 229
Period size: 79 Copynumber: 2.0 Consensus size: 81
1988134 AATCGATGTT
1988144 TTGGAAATAAAACTGGGGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTT-ATAAATAAAAC
1 TTGGAAAT-AAACTGGGGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTGA-AAATAAAAC
1988208 CAGGATTAGAGTATCCCC
64 CAGGATTAGAGTATCCCC
* * **
1988226 TTGGAAAT-AAC-GGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGAAAATAAAACTG
1 TTGGAAATAAACTGGGGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTGAAAATAAAACCA
* *
1988289 GGGTTGGAGTATCCCC
66 GGATTAGAGTATCCCC
1988305 GATTGTAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
79 60 0.83
80 4 0.06
82 8 0.11
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (81 bp):
TTGGAAATAAACTGGGGTTGGAGTATCCCCAATTATGGAAAATTGATGTTTTGAAAATAAAACCA
GGATTAGAGTATCCCC
Found at i:1988303 original size:51 final size:51
Alignment explanation
Indices: 1988237--1988336 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
1988227 TGGAAATAAC
**
1988237 GGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGAAAATAAAACT
1 GGGGTTGGAGTATCCCCGATTATAAAAAATTGGTGTTTTGAAAATAAAACT
* *
1988288 GGGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTGGAAATAAAA
1 GGGGTTGGAGTATCCCCGATTATAAAAAATTGGTGTTTTGAAAATAAAA
1988337 ACATGAATGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTATAAAAAATTGGTGTTTTGAAAATAAAACT
Found at i:1991299 original size:41 final size:41
Alignment explanation
Indices: 1991199--1992125 Score: 270
Period size: 43 Copynumber: 21.3 Consensus size: 41
1991189 TGTCCCATTT
* * *
1991199 TTTGAGGACAAAGG-AAAAGAGAATGAAATGGGTCTTGCTC
1 TTTGAGGACAAAGGAAAAAGAAAAGGAAATGGGTCCTGCTC
* *
1991239 TTTGAGGATAAAGGAAAAAAGAAAAGGAAA-GTGTCCTGCT-
1 TTTGAGGACAAAGG-AAAAAGAAAAGGAAATGGGTCCTGCTC
* * *
1991279 TCTTGAGGACAAAGTGAAAAAG---A-GTACT---TTCTGCT-
1 T-TTGAGGACAAAG-GAAAAAGAAAAGGAAATGGGTCCTGCTC
* * *
1991314 TTTCGAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCCTACTC
1 TTT-GAGGACAAAGG-AAAAA-GAAAAGGAAATGGGTCCTGCTC
* * * *
1991358 TTTGAGGATAAAAGAAAAAGGAAAA-TAAAGTGCGTCCTGCTC
1 TTTGAGGACAAAGGAAAAA-GAAAAGGAAA-TGGGTCCTGCTC
* * * * *
1991400 TTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTC
1 TTTGAGGAC-AAA-GG-AAA-AAGAAAAGGAAATGGGTCCTGCTC
* *
1991445 TTTGAGGACAAAAGGAAAAAAGAATGAAATGG-AACGTGTCCTGCTC
1 TTTGAGGAC-AAAGG-AAAAAG-A--AAA-GGAAATGGGTCCTGCTC
* * *
1991491 TTTGAGGACAAAGGAGAAAAGGGAAA-TAAA-GCGCGTCCTACTC
1 TTTGAGGACAAAGGA-AAAA-GAAAAGGAAATG-G-GTCCTGCTC
* *
1991534 TTTGAGGACAAAAGGGAAAAG--AAGGAAATGAAGTACGTCTTGCTC
1 TTTGAGGAC-AAAGGAAAAAGAAAAGGAAATG--G---GTCCTGCTC
* * *
1991579 TTTGAGGACAAAAGGAGAAAAGAAGGGAATGG-AACGTGTCCTACTC
1 TTTGAGGAC-AAAGGA-AAAAGAA---AA-GGAAATGGGTCCTGCTC
* * *
1991625 TTTGAGGACAAAAGAGAAAAGGAAAA-TAAAGTGCGTCCTGCTC
1 TTTGAGGAC-AAAG-GAAAAAGAAAAGGAAA-TGGGTCCTGCTC
* * * *
1991668 TTTGAGGATAAAGGAGAAAAAGGAAAA-TAAAGTGCGTCCTACTC
1 TTTGAGGACAAA-G-GAAAAA-GAAAAGGAAA-TGGGTCCTGCTC
* * * ** *
1991712 TTTGAGGACAAAAAGGAAAAGAAGGAAATGAAGTAAGTCTTGCTC
1 TTTGAGGAC--AAAGG-AAA-AAGAAAAGGAAATGGGTCCTGCTC
* * *
1991757 TTTGAGGACAAAAGGAGAAAAGAAGGGAATGG-AACGTGTCCTACTC
1 TTTGAGGAC-AAAGGA-AAAAGAA---AA-GGAAATGGGTCCTGCTC
* * ** * *
1991803 TTTGAGGACCAAAGAGAAAAGGAAAA-TAAAGTGCATCATACTC
1 TTTGAGGA-CAAAG-GAAAAAGAAAAGGAAA-TGGGTCCTGCTC
* *
1991846 TTTGAGGACAAAAGGGAAAAAGAAGGAAATGG-AATGTGTCTTGCTC
1 TTTGAGGAC-AAA-GGAAAAAG-A--AAA-GGAAATGGGTCCTGCTC
* * * * * *
1991892 TTTGAGGACAAGGGGGAAAACGAAAA-TAAAGTGCGTCCTACTT
1 TTTGAGGACAA--AGGAAAAAGAAAAGGAAA-TGGGTCCTGCTC
* * *
1991935 TTTGAGAACAAAAG-AGAAGAAAAGGAAATGAAGTGCGTCCTGCTC
1 TTTGAGGACAAAGGAAAAAGAAAAGGAAAT---G-G-GTCCTGCTC
* * *
1991980 TTTGAGGACAAAAAGGGAAAAGAAGGGAATGG-AGTGTGTCCTGCTC
1 TTTGAGGAC--AAAGGAAAAAGAA---AA-GGAAATGGGTCCTGCTC
* * * *
1992026 TTTGAGGACAAGGGGGAAAAGGAAAA-TAAAGTGTGTCCTGCTC
1 TTTGAGGACAA--AGGAAAAAGAAAAGGAAA-TGGGTCCTGCTC
* * * *
1992069 TTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTC
1 TTTGAGGAC-AAA-GGAAAA-AGA-AAAGGAAATGGGTCCTGCTC
1992114 TTTGAGGACAAA
1 TTTGAGGACAAA
1992126 AGGGGAAAAG
Statistics
Matches: 680, Mismatches: 111, Indels: 188
0.69 0.11 0.19
Matches are distributed among these distances:
34 3 0.00
35 22 0.03
36 1 0.00
37 2 0.00
38 1 0.00
39 1 0.00
40 27 0.04
41 36 0.05
42 58 0.09
43 154 0.23
44 64 0.09
45 129 0.19
46 149 0.22
47 13 0.02
48 7 0.01
51 9 0.01
52 4 0.01
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.20
Consensus pattern (41 bp):
TTTGAGGACAAAGGAAAAAGAAAAGGAAATGGGTCCTGCTC
Found at i:1991536 original size:134 final size:133
Alignment explanation
Indices: 1991318--1992211 Score: 1035
Period size: 134 Copynumber: 6.7 Consensus size: 133
1991308 TCTGCTTTTC
* * * * * *
1991318 GAGGAC-AAA-GGAAAA-AAGGAAAACGAAATGCGTCCTACTCTTTGAGGATAAAAGA-AAAAGG
1 GAGGACAAAAGGGAAAAGAAGG-AAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
*
1991379 AAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACT
65 AAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACT
1991444 CTTT
130 CTTT
* * *
1991448 GAGGACAAAAGGAAAAAAGAATGAAATGGAACGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
1 GAGGACAAAAGG-GAAAAGAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
* * * * *
1991513 GAAATAAAGCGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACGTCTTGCT
65 AAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACT
1991578 CTTT
130 CTTT
* * * *
1991582 GAGGACAAAAGGAGAAAAGAAGGGAATGGAACGTGTCCTACTCTTTGAGGACAAAAGAGAAAAGG
1 GAGGACAAAAGG-GAAAAGAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
* * *
1991647 AAAATAAAGTGCGTCCTGCTCTTTGAGGA-TAAA-GGAGAAA-AAGGAAAATAAAGTGCGTCCTA
65 AAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGGGA-AAAGAAGG-AAATGAAGTGCGTCCTA
1991709 CTCTTT
128 CTCTTT
* *
1991715 GAGGACAAAAAGGAAAAGAAGGAAAT-GAA-GTAAGTCTTGCTCTTTGAGGACAAAAGGAGAAAA
1 GAGGACAAAAGGGAAAAGAAGGAAATGGAATGT--GTCCTGCTCTTTGAGGAC-AAAGGAGAAAA
* * * * * *
1991778 -GAAGGGAATGGAACGT--GTCCTACTCTTTGAGGACCAAAGAGAAAAG--GAAAATAAAGTGCA
63 GGAA---AAT--AAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCG
*
1991838 TCATACTCTTT
123 TCCTACTCTTT
* * * *
1991849 GAGGACAAAAGGGAAAAAGAAGGAAATGGAATGTGTCTTGCTCTTTGAGGACAAGGGGGAAAACG
1 GAGGACAAAAGGG-AAAAGAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
* * * *
1991914 AAAATAAAGTGCGTCCTACTTTTTGAGAACAAAAGAGAAGAA-AAGGAAATGAAGTGCGTCCTGC
65 AAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAA-AAGAAGGAAATGAAGTGCGTCCTAC
1991978 TCTTT
129 TCTTT
* * * *
1991983 GAGGACAAAAAGGGAAAAGAAGGGAATGGAGTGTGTCCTGCTCTTTGAGGACAAGGGGGAAAAGG
1 GAGGAC-AAAAGGGAAAAGAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
* * * *
1992048 AAAATAAAGTGTGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCT
65 AAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACT
1992113 CTTT
130 CTTT
* * * * *
1992117 GAGGACAAAAGGGGAAAAGAAGGGAATGGAGTGTGTCTTGCTCTTTGAGGACAAGGGGGAAAAGG
1 GAGGACAAAA-GGGAAAAGAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG
* **
1992182 AAAATAAAGTGCGTCATTTTCTTTGAGGAC
65 AAAATAAAGTGCGTCCTACTCTTTGAGGAC
1992212 TAGGAGATGC
Statistics
Matches: 667, Mismatches: 67, Indels: 56
0.84 0.08 0.07
Matches are distributed among these distances:
130 12 0.02
131 6 0.01
132 67 0.10
133 86 0.13
134 418 0.63
135 61 0.09
136 9 0.01
137 8 0.01
ACGTcount: A:0.40, C:0.12, G:0.29, T:0.19
Consensus pattern (133 bp):
GAGGACAAAAGGGAAAAGAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGA
AAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTC
TTT
Found at i:1991537 original size:89 final size:88
Alignment explanation
Indices: 1991309--1992211 Score: 732
Period size: 89 Copynumber: 10.2 Consensus size: 88
1991299 AGAGTACTTT
* * * * *
1991309 CTGCT-TTTCGAGGAC-AAAGGAAAAAAGGAAAACGAAATGCGTCCTACTCTTTGAGGATAAAA-
1 CTGCTCTTT-GAGGACAAAAGGAGAAAAGGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAG
* *
1991371 GAAAAAGGA-AAAT-AAAGTGCGTC
65 GGAAAAGAAGAAATGAAAGT-CGTC
1991394 CTGCTCTTTGAGGACAAAAGG-GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAA
1 CTGCTCTTTGAGGACAAAAGGAGAAAAG--GGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAA
* *
1991458 GGAAAAAAGAATGAAATGGAACGT-GTC
64 GG-GAAAAGAA-GAAAT-GAAAGTCGTC
* *
1991485 CTGCTCTTTGAGGAC-AAAGGAGAAAAGGGAAATAAAGCGCGTCCTACTCTTTGAGGACAAAAGG
1 CTGCTCTTTGAGGACAAAAGGAGAAAAGGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAGG
1991549 GAAAAGAAGGAAATG-AAGTACGTC
66 GAAAAGAA-GAAATGAAAGT-CGTC
* *
1991573 TTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAACGT--GTCCTACTCTTTGAGGACAA
1 CTGCTCTTTGAGGACAAAAGGAGAAAAG--GGAAAT-GAA-GTGCGTCCTACTCTTTGAGGACAA
* *
1991636 AAGAGAAAAGGA-AAAT-AAAGTGCGTC
62 AAGGGAAAAGAAGAAATGAAAGT-CGTC
* * * *
1991662 CTGCTCTTTGAGGA-TAAAGGAGAAAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAA
1 CTGCTCTTTGAGGACAAAAGGAG-AAAAGGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAG
*
1991726 GGAAAAGAAGGAAATG-AAGTAAGTC
65 GGAAAAGAA-GAAATGAAAGT-CGTC
* * *
1991751 TTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAACGT--GTCCTACTCTTTGAGGACCA
1 CTGCTCTTTGAGGACAAAAGGAGAAAAG--GGAAAT-GAA-GTGCGTCCTACTCTTTGAGGACAA
* * *
1991814 AAGAGAAAAGGA-AAAT-AAAGTGCATC
62 AAGGGAAAAGAAGAAATGAAAGT-CGTC
* * * * *
1991840 ATACTCTTTGAGGACAAAAGG-GAAAAAGAAGGAAATGGAA-TGTGTCTTGCTCTTTGAGGACAA
1 CTGCTCTTTGAGGACAAAAGGAG-AAAAG--GGAAAT-GAAGTGCGTCCTACTCTTTGAGGACAA
**
1991903 GGGGGAAAACG-A-AAAT-AAAGTGCGTC
62 AAGGGAAAA-GAAGAAATGAAAGT-CGTC
* * * *
1991929 CTACTTTTTGAGAACAAAAGAGAAGAAAA-GGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAA
1 CTGCTCTTTGAGGACAAAAG-G-AGAAAAGGGAAATGAAGTGCGTCCTACTCTTTGAGGAC-AAA
* * *
1991993 AGGGAAAAGAAGGGAATG-GAGTGTGTC
63 AGGGAAAAGAA-GAAATGAAAGT-CGTC
* * * * * *
1992020 CTGCTCTTTGAGGAC-AAGGGGGAAAAGGAAAATAAAGTGTGTCCTGCTCTTTGAGGACAAAAGG
1 CTGCTCTTTGAGGACAAAAGGAGAAAAGGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAGG
1992084 GAAAAGAAAGAAATG-AAGTGCGTC
66 GAAAAG-AAGAAATGAAAGT-CGTC
* * * * * * **
1992108 CTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAGTGTGTCTTGCTCTTTGAGGACAAGG
1 CTGCTCTTTGAGGACAAAAGGAGAAAAG--GGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAA
*
1992173 GGGAAAAGGA-AAAT-AAAGTGCGTC
64 GGGAAAAGAAGAAATGAAAGT-CGTC
* **
1992197 ATTTTCTTTGAGGAC
1 CTGCTCTTTGAGGAC
1992212 TAGGAGATGC
Statistics
Matches: 684, Mismatches: 84, Indels: 96
0.79 0.10 0.11
Matches are distributed among these distances:
85 18 0.03
86 13 0.02
87 69 0.10
88 108 0.16
89 289 0.42
90 18 0.03
91 157 0.23
92 5 0.01
93 7 0.01
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.20
Consensus pattern (88 bp):
CTGCTCTTTGAGGACAAAAGGAGAAAAGGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAGG
GAAAAGAAGAAATGAAAGTCGTC
Found at i:1991971 original size:312 final size:310
Alignment explanation
Indices: 1991322--1992127 Score: 1002
Period size: 312 Copynumber: 2.6 Consensus size: 310
1991312 CTTTTCGAGG
* * *
1991322 ACAAAG-GAA-AAAAGGAAAACGAAATGCGTCCTACTCTTTGAGGATAAA--AGAAAAAGGAAAA
1 ACAAAGAGAAGAAAAGGAAAATGAAGTGCGTCCTGCTCTTTGAGGATAAAGGAGAAAAAGGAAAA
* *
1991383 TAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTT
66 TAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGAGTCCTGCTCTTT
* *
1991448 GAGGACAAAAGGAAAAAAGAATGAAATGGAACGTGTCCTGCTCTTTGAGGA-CAAAGGAGAAAAG
131 GAGGACAAAAGGAGAAAAGAAAGAAATGGAACGTGTCCTGCTCTTTGAGGACCAAA-GAGAAAAG
* * *
1991512 GGAAATAAAGCGCGTCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACGTCTTGC
195 GAAAATAAAGCGCATCATACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTA-GTCTTGC
* *
1991577 TCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAACGTGTCCTACTCTTTGAGG
259 TCTTTGAGGACAAAAGGAGAAAAGAA--GAAT-GAAAGTGTCCTACTCTTTGAGA
*
1991632 ACAAA-AG-AGAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGATAAAGGAGAAAAAGGAAAA
1 ACAAAGAGAAGAAAAGGAAAATGAAGTGCGTCCTGCTCTTTGAGGATAAAGGAGAAAAAGGAAAA
* * * *
1991695 TAAAGTGCGTCCTACTCTTTGAGGACAAAAAGGAAAAGAAGGAAATGAAGTAAGTCTTGCTCTTT
66 TAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGAGTCCTGCTCTTT
* * *
1991760 GAGGACAAAAGGAGAAAAGAAGGGAATGGAACGTGTCCTACTCTTTGAGGACCAAAGAGAAAAGG
131 GAGGACAAAAGGAGAAAAGAAAGAAATGGAACGTGTCCTGCTCTTTGAGGACCAAAGAGAAAAGG
*
1991825 AAAATAAAGTGCATCATACTCTTTGAGGACAAAAGGGAAAAAGAAGGAAATGGAATGT-GTCTTG
196 AAAATAAAGCGCATCATACTCTTTGAGGACAAAAGGG-AAAAGAAGGAAAT-GAA-GTAGTCTTG
* * *
1991889 CTCTTTGAGGAC-AAGGGGGAAAACGAA-AAT-AAAGTGCGTCCTACTTTTTGAGA
258 CTCTTTGAGGACAAAAGGAGAAAA-GAAGAATGAAAGT--GTCCTACTCTTTGAGA
*
1991942 ACAAAAGAGAAGAAAAGG-AAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAAGG-GAAAAGAAG
1 AC-AAAGAGAAGAAAAGGAAAATGAAGTGCGTCCTGCTCTTTGAGG--ATAAAGGAG-AAA-AAG
* ** * ** * * *
1992005 G-GAATGGAGTGTGTCCTGCTCTTTGAGGACAAGGGGGAAAAG--GAAAATAAAGTGTGTCCTGC
61 GAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGAGTCCTGC
*
1992067 TCTTTGAGGACAAAAGG-GAAAAGAAAGAAAT-GAA-GTGCGTCCTGCTCTTTGAGGACAAAAG
126 TCTTTGAGGACAAAAGGAGAAAAGAAAGAAATGGAACGT--GTCCTGCTCTTTGAGGACCAAAG
1992128 GGGAAAAGAA
Statistics
Matches: 434, Mismatches: 42, Indels: 39
0.84 0.08 0.08
Matches are distributed among these distances:
308 4 0.01
309 3 0.01
310 63 0.15
311 36 0.08
312 230 0.53
313 47 0.11
314 45 0.10
315 6 0.01
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.19
Consensus pattern (310 bp):
ACAAAGAGAAGAAAAGGAAAATGAAGTGCGTCCTGCTCTTTGAGGATAAAGGAGAAAAAGGAAAA
TAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGAGTCCTGCTCTTT
GAGGACAAAAGGAGAAAAGAAAGAAATGGAACGTGTCCTGCTCTTTGAGGACCAAAGAGAAAAGG
AAAATAAAGCGCATCATACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTAGTCTTGCTC
TTTGAGGACAAAAGGAGAAAAGAAGAATGAAAGTGTCCTACTCTTTGAGA
Found at i:1992194 original size:223 final size:221
Alignment explanation
Indices: 1991349--1992211 Score: 862
Period size: 223 Copynumber: 3.9 Consensus size: 221
1991339 AACGAAATGC
* * * *
1991349 GTCCTACTCTTTGAGGATAA-AAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAA
1 GTCCTGCTCTTTGAGGACAAGGAG-AAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAA
* * * *
1991413 GGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAGGAAAAAAGAATGAAATGGA
65 GGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAAT--A
* * * * *
1991478 ACGT--GTCCTGCTCTTTGAGGACAAAGGAGAAAAGGGAAATAAAGCGCGTCCTACTCTTTGAGG
128 AAGTGCGTCCTACTCTTTGAGGACAAAGAAGAAAAGGGAAATAAAGTGCGTCCTGCTCTTTGAGG
* * **
1991541 ACAAAAGGGAAAAGAAGGAAATGAAGTAC
193 ACAAAAGGGAAAAGAAGGGAATGGAGTGT
* *
1991570 GTCTTGCTCTTTGAGGACAAAAGGAGAAAA-GAAGGGAATGGAACGT--GTCCTACTCTTTGAGG
1 GTCCTGCTCTTTGAGGAC--AAGGAGAAAAGGAA---AAT--AAAGTGCGTCCTACTCTTTGAGG
* * * *
1991632 ACAAAAGAGAAAAG-GA-AAATAAAGTGCGTCCTGCTCTTTGAGGA-TAAAGGAG-AAA-AAGGA
59 ACAAAAGGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGG-
* ** *
1991692 AAATAAAGTGCGTCCTACTCTTTGAGGACAAA-AAGGAAAAGAAGGAAATGAAGTAAGTCTTGCT
123 AAATAAAGTGCGTCCTACTCTTTGAGGACAAAGAA-GAAAAG--GGAAATAAAGTGCGTCCTGCT
**
1991756 CTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAACGT
185 CTTTGAGGACAAAAGG-GAAAAGAAGGGAATGGAGTGT
* * * *
1991794 GTCCTACTCTTTGAGGACCAAAGAGAAAAGGAAAATAAAGTGCATCATACTCTTTGAGGACAAAA
1 GTCCTGCTCTTTGAGGA-CAAGGAGAAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAA
* * * * *
1991859 GGGAAAAAGAAGGAAATGGAA-TGTGTCTTGCTCTTTGAGGAC-AAGGGGGAAAACG-A--AAAT
65 GGG-AAAAGAAAGAAAT-GAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAGAAAA-GAAGGAAAT
* * *
1991919 AAAGTGCGTCCTACTTTTTGAGAACAAAAGAGAAGAAAA-GGAAATGAAGTGCGTCCTGCTCTTT
127 AAAGTGCGTCCTACTCTTTGAGGAC--AA-AGAAGAAAAGGGAAATAAAGTGCGTCCTGCTCTTT
1991983 GAGGACAAAAAGGGAAAAGAAGGGAATGGAGTGT
189 GAGGAC-AAAAGGGAAAAGAAGGGAATGGAGTGT
* * *
1992017 GTCCTGCTCTTTGAGGACAAGGGGGAAAAGGAAAATAAAGTGTGTCCTGCTCTTTGAGGACAAAA
1 GTCCTGCTCTTTGAGGACAA-GGAGAAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAA
* * **
1992082 GGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGA
65 GGGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAATAAA
* * * * ** * * **
1992147 GTGTGTCTTGCTCTTTGAGGACAAGGGGGAAAAGGAAAATAAAGTGCGTCATTTTCTTTGAGGAC
130 GTGCGTCCTACTCTTTGAGGACAAAGAAGAAAAGGGAAATAAAGTGCGTCCTGCTCTTTGAGGAC
1992212 TAGGAGATGC
Statistics
Matches: 526, Mismatches: 77, Indels: 76
0.77 0.11 0.11
Matches are distributed among these distances:
219 8 0.02
220 4 0.01
221 76 0.14
222 55 0.10
223 242 0.46
224 68 0.13
225 60 0.11
226 7 0.01
227 6 0.01
ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20
Consensus pattern (221 bp):
GTCCTGCTCTTTGAGGACAAGGAGAAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAG
GGAAAAGAAAGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAATAAAG
TGCGTCCTACTCTTTGAGGACAAAGAAGAAAAGGGAAATAAAGTGCGTCCTGCTCTTTGAGGACA
AAAGGGAAAAGAAGGGAATGGAGTGT
Found at i:1992450 original size:124 final size:122
Alignment explanation
Indices: 1992201--1992506 Score: 447
Period size: 124 Copynumber: 2.5 Consensus size: 122
1992191 TGCGTCATTT
* * * * * *
1992201 TCTTTGAGGACTAGGAGATGCCACCAACTTGTGCGGGCTTTG--AAGGAGAAGGCGTCCTGCTCT
1 TCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
1992264 TTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGC
65 TTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGC
* * *
1992322 TCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTGGAAAAGAAAAAGGTGTCCTGCTCTT
1 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTT
1992387 TGAGGACTAAAAGGGTGCCACCAA-TTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
66 TGAGGACTAAAA-GGTGCCACCAACTT-GTGTGGGCTTT-AAAAGGAAAAGGTGTCCTGC
* * *
1992446 TCTTTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGCCCTGC
1 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGC
1992507 AAAGAAAAAA
Statistics
Matches: 165, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
120 23 0.14
121 12 0.07
122 33 0.20
123 22 0.13
124 75 0.45
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (122 bp):
TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTT
TGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGC
Found at i:1992506 original size:61 final size:61
Alignment explanation
Indices: 1992201--1992498 Score: 413
Period size: 61 Copynumber: 4.9 Consensus size: 61
1992191 TGCGTCATTT
** * * * *
1992201 TCTTTGAGGACTAGGAGATGCCACCAACTTGTGCGGGCTTTG--AAGGAGAAGGCGTCCTGC
1 TCTTTGAGGACTAAAAG-TGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
*
1992261 TCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGTGTCCTGC
1 TCTTTGAGGACTAAAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
* * * *
1992322 TCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTGGAAAAGAAAAAGGTGTCCTGC
1 TCTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
*
1992383 TCTTTGAGGACTAAAAGGGTGCCACCAATTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
1 TCTTTGAGGACTAAAA--GTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
* *
1992446 TCTTTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGG
1 TCTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGG
1992499 CGCCCTGCAA
Statistics
Matches: 214, Mismatches: 18, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
60 58 0.27
61 98 0.46
63 58 0.27
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (61 bp):
TCTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAAGGTGTCCTGC
Found at i:1992572 original size:142 final size:143
Alignment explanation
Indices: 1992364--1992648 Score: 477
Period size: 142 Copynumber: 2.0 Consensus size: 143
1992354 TGGGCTTGGA
* *
1992364 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGGTGCCACCAATTCGTGTGGGCTTTGAAA
1 AAAGAAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGGTGCCACCAATTCGTATGGGCTTTGAAA
* * *
1992429 AGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAA
66 AGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGTGCCACCAACTCATATGGGCTTTGAAAAGAA
1992494 AAAGGCGCCCTGC
131 AAAGGCGCCCTGC
1992507 AAAGAAAAAAGTG-CCTTGCTCTTTGAGGACT-AAAGGGTGCCACCAACTT-GTATGGGCTTTGA
1 AAAGAAAAAAGTGTCC-TGCTCTTTGAGGACTAAAAGGGTGCCACCAA-TTCGTATGGGCTTTGA
1992569 AAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGTGCCACCAACTCATATGGGCTTTGAAAAG
64 AAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGTGCCACCAACTCATATGGGCTTTGAAAAG
*
1992634 AAAAAGGCGTCCTGC
129 AAAAAGGCGCCCTGC
1992649 TCTTTGAGGA
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
142 105 0.78
143 29 0.22
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (143 bp):
AAAGAAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGGTGCCACCAATTCGTATGGGCTTTGAAA
AGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGTGCCACCAACTCATATGGGCTTTGAAAAGAA
AAAGGCGCCCTGC
Found at i:1992664 original size:123 final size:122
Alignment explanation
Indices: 1992523--1993579 Score: 1322
Period size: 123 Copynumber: 8.6 Consensus size: 122
1992513 AAAAGTGCCT
* * *
1992523 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAAGGTGTCCTAC
1 TGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGC
* *
1992588 TCTTTGAGGACTAAAAGTGCCACCAACTCATATGGGCTTTGAAAAGAAAAAGGCGTCC
65 TCTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* *
1992646 TGCTCTTTGAGGATTAAAGGGTGCCACCAACTCGTGTAGGCTTTGAAAAGAAAAAGGTGTCCTGC
1 TGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGC
* * * * * * *
1992711 TCTTTAAGGACTAAAAGGTGCTACCAATTTGTGTGGGCTTT-AATAGGAAAAGGTGTCC
65 TCTTTGAGGACTAAAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * *
1992769 TGCTTTTTGAGAACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTGCT
1 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
* * * *
1992834 CTTTAAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTG--AAGTAGAAGGCGTCC
66 CTTTGAGGACTAAAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* ** **
1992890 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTATGTGGGCTTT-AAAAGGAAAAAGGCATCCTG
1 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGGTGTCCTG
* * * * * *
1992954 CTCTTTGAAGACTAAAAGGGTGCCACCAACTCGTATGGGATTTGAAAAGGAAAATGTGTCC
64 CTCTTTGAGGACTAAAA--GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * ***
1993015 TGCTCTTTGAGGATTAAAGGTGCCATCAACTCGTGTGGG-TTTGAAAAGAAAAAGGCACCCTGCT
1 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
* *
1993079 TTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGGCGTCC
66 CTTTGAGGACTAAA-AGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCGTCC
* * *
1993138 TGCTCTTTGAGGACTAAAAGTGCCATCAACTCGTGTGGGCTTTGGAAAGAAAAAGGTGTCCTGCT
1 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
* * * *
1993203 CTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGTGTCT
66 CTTTGAGGACTA-AAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * *
1993261 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAATGTGTCTTAC
1 TGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGC
* *
1993325 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTTC
65 TCTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * * * *
1993383 TGCTCTTTGAGGACTAAGGGTGCCACCAACTCCTGTTGGCTTTG--AAGGAGAAGGCGTCCTACT
1 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
* * * * *
1993446 TTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGACGTCC
66 CTTTGAGGACTA-AAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * *
1993503 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGACTTTGAAACGAAAAAGGTGTCTTGCT
1 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
1993568 CTTTGAGGACTA
66 CTTTGAGGACTA
1993580 GAAGGGCTAA
Statistics
Matches: 814, Mismatches: 103, Indels: 35
0.86 0.11 0.04
Matches are distributed among these distances:
120 80 0.10
121 79 0.10
122 241 0.30
123 257 0.32
124 129 0.16
125 28 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (122 bp):
TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
CTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
Found at i:1992701 original size:62 final size:61
Alignment explanation
Indices: 1992507--1993584 Score: 1339
Period size: 61 Copynumber: 17.6 Consensus size: 61
1992497 GGCGCCCTGC
* * *
1992507 AAAGAAAAAAGTG-CCTTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTATGGGCTTTGA
1 AAAGAAAAAGGTGTCC-TGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTTGA
* * * *
1992569 AAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGTGCCACCAACTCATATGGGCTTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
* * *
1992630 AAAGAAAAAGGCGTCCTGCTCTTTGAGGATTAAAGGGTGCCACCAACTCGTGTAGGCTTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTTGA
* * * *
1992692 AAAGAAAAAGGTGTCCTGCTCTTTAAGGACTAAAAGGTGCTACCAATTTGTGTGGGCTTT-A
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGA
* * * * *
1992753 ATAGGAAAAGGTGTCCTGCTTTTTGAGAACTAAAGGTGCCACCAACTCGTGTGGGCTTTAA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
* *
1992814 AAAGAAAAAGGTGTCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTG-
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGA
* * * * **
1992875 -AAGTAGAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTATGTGGGCTTT-A
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTGA
** * * *
1992935 AAAGGAAAAAGGCATCCTGCTCTTTGAAGACTAAAAGGGTGCCACCAACTCGTATGGGATTTGA
1 AAA-GAAAAAGGTGTCCTGCTCTTTGAGGACT-AAA-GGTGCCACCAACTCGTGTGGGCTTTGA
* * * *
1992999 AAAGGAAAATGTGTCCTGCTCTTTGAGGATTAAAGGTGCCATCAACTCGTGTGGG-TTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
*** *
1993059 AAAGAAAAAGGCACCCTGCTTTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTTGA
* * * *
1993121 AAAGAAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGTGCCATCAACTCGTGTGGGCTTTGG
1 AAAG-AAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
*
1993183 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTGA
* *
1993245 AAAGAAAAAGGTGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-A
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGA
* * * *
1993306 AAAGGAAAATGTGTCTTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
* * * * *
1993367 AAAGAAAAAGGCGTTCTGCTCTTTGAGGACTAAGGGTGCCACCAACTCCTGTTGGCTTTG-
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
* * * * * *
1993427 -AAGGAGAAGGCGTCCTACTTTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-A
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTGA
* ** *
1993487 AAAGGAAAAGACGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGACTTTGA
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
* *
1993548 AACGAAAAAGGTGTCTTGCTCTTTGAGGACTAGAAGG
1 AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTA-AAGG
1993585 GCTAAAAGAG
Statistics
Matches: 883, Mismatches: 110, Indels: 46
0.85 0.11 0.04
Matches are distributed among these distances:
59 27 0.03
60 183 0.21
61 313 0.35
62 280 0.32
63 76 0.09
64 4 0.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (61 bp):
AAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA
Found at i:1995004 original size:30 final size:30
Alignment explanation
Indices: 1994970--1995055 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
1994960 TTCTTGGACA
* * *
1994970 AGTTTTCTTGTTTGCCCTCTCAAGTGTGGG
1 AGTTTTCTTGTTTGCCCCCCCAAATGTGGG
1995000 AGTTTTCTTGTTTGCCCCCCCAAATGTGGG
1 AGTTTTCTTGTTTGCCCCCCCAAATGTGGG
*
1995030 ATTTTTCTTGTTTGCCCCCCCAAATG
1 AGTTTTCTTGTTTGCCCCCCCAAATG
1995056 CGAGAAGTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.13, C:0.26, G:0.21, T:0.41
Consensus pattern (30 bp):
AGTTTTCTTGTTTGCCCCCCCAAATGTGGG
Found at i:2003728 original size:18 final size:18
Alignment explanation
Indices: 2003705--2003769 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
2003695 ATCTTCTTCT
2003705 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
2003723 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
2003744 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
2003765 CTCCT
1 CTCCT
2003770 ATCATCCCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 2 0.05
20 2 0.05
21 4 0.11
22 2 0.05
23 2 0.05
24 7 0.19
25 3 0.08
ACGTcount: A:0.09, C:0.49, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:2003767 original size:12 final size:12
Alignment explanation
Indices: 2003752--2003781 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
2003742 TCCTGTCTCT
2003752 CCTCCTATCATC
1 CCTCCTATCATC
2003764 CCTCCTATCATC
1 CCTCCTATCATC
2003776 CCTCCT
1 CCTCCT
2003782 CTCTCTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.53, G:0.00, T:0.33
Consensus pattern (12 bp):
CCTCCTATCATC
Found at i:2003782 original size:15 final size:13
Alignment explanation
Indices: 2003708--2003781 Score: 57
Period size: 12 Copynumber: 5.6 Consensus size: 13
2003698 TTCTTCTCTC
2003708 CTCCTCCTATCAT
1 CTCCTCCTATCAT
*
2003721 CCCTCCTCTCTCTATTAT
1 --CT-C-CTC-CTATCAT
*
2003739 CT-CTCCTGTC-T
1 CTCCTCCTATCAT
2003750 CTCCTCCTATCAT
1 CTCCTCCTATCAT
2003763 C-CCTCCTATCAT
1 CTCCTCCTATCAT
2003775 C-CCTCCT
1 CTCCTCCT
2003782 CTCTCTTCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
11 3 0.06
12 28 0.56
13 5 0.10
15 2 0.04
16 3 0.06
17 3 0.06
18 6 0.12
ACGTcount: A:0.11, C:0.49, G:0.01, T:0.39
Consensus pattern (13 bp):
CTCCTCCTATCAT
Found at i:2006672 original size:28 final size:28
Alignment explanation
Indices: 2006641--2006696 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
2006631 TATCCCCTCA
* *
2006641 GAAATAACGGGGTTGGAGTATCTCCGAT
1 GAAATAAAGAGGTTGGAGTATCTCCGAT
2006669 GAAATAAAGAGGTTGGAGTATCTCCGAT
1 GAAATAAAGAGGTTGGAGTATCTCCGAT
2006697 TGTGAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.25
Consensus pattern (28 bp):
GAAATAAAGAGGTTGGAGTATCTCCGAT
Found at i:2006748 original size:51 final size:51
Alignment explanation
Indices: 2006684--2006795 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
2006674 AAAGAGGTTG
* * * *
2006684 GAGTAT-CTCCGATTGTGAAAAATTGGTGTTTTAGAAATAAGATCGGAGTTA
1 GAGTATCCT-CGATTGTGAAAAATTGATGATTTAGAAATAAAACCGGAGTTA
*
2006735 GAGTATCCTCGATTGTGAAAAATTGATGATTTAGAAATAAAACCGGAGTTG
1 GAGTATCCTCGATTGTGAAAAATTGATGATTTAGAAATAAAACCGGAGTTA
2006786 GAGTATCCTC
1 GAGTATCCTC
2006796 TTGGAAATAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 53 0.96
52 2 0.04
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (51 bp):
GAGTATCCTCGATTGTGAAAAATTGATGATTTAGAAATAAAACCGGAGTTA
Found at i:2006888 original size:131 final size:130
Alignment explanation
Indices: 2006700--2007002 Score: 414
Period size: 131 Copynumber: 2.3 Consensus size: 130
2006690 CTCCGATTGT
* * *
2006700 GAAAAATTGGTGTTTTAGAAATAAGATCGGAGTTAGAGTATCCTCGATTGTGAAAAATTGATGAT
1 GAAAAATTGGTGTTTTAGAAATAA-AACGGGGTTAGAGTATCCTCGATTATGAAAAATTGATGAT
* * **
2006765 TTAGAAATAAAACC-GGAGTTGGAGTATCCTCTTGGAAATAACGGGGTTAGAGTATCCCTGATGA
65 TTAGAAATAAAACCGGGA-TTAGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATCCCCAATGA
2006829 TG
129 TG
* * * *
2006831 GAAAAATCGATGTTTTAGAAATAAAACCGGGGTTAGAGTATCCTCGATTATGGAAAATTGATGTT
1 GAAAAATTGGTGTTTTAGAAATAAAA-CGGGGTTAGAGTATCCTCGATTATGAAAAATTGATGAT
* *
2006896 TTAGAAATAAAACCGGGATTAGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCAATTAT
65 TTAGAAATAAAACCGGGATTAGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATCCCCAATGAT
2006961 G
130 G
* *
2006962 G-AAAATTGGTGTTTT-GAAAATAAAACTGGGTTGGAGTATCC
1 GAAAAATTGGTGTTTTAG-AAATAAAACGGGGTTAGAGTATCC
2007003 CCGACTGTAA
Statistics
Matches: 152, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
129 15 0.10
130 21 0.14
131 113 0.74
132 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (130 bp):
GAAAAATTGGTGTTTTAGAAATAAAACGGGGTTAGAGTATCCTCGATTATGAAAAATTGATGATT
TAGAAATAAAACCGGGATTAGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATCCCCAATGATG
Found at i:2006908 original size:51 final size:52
Alignment explanation
Indices: 2006806--2006925 Score: 190
Period size: 51 Copynumber: 2.3 Consensus size: 52
2006796 TTGGAAATAA
2006806 CGGGGTTAGAGTATCCCTGATGATGGAAAAATCGATGTTTTAGAAATAAAAC
1 CGGGGTTAGAGTATCCCTGATGATGGAAAAATCGATGTTTTAGAAATAAAAC
* *
2006858 CGGGGTTAGAGTAT-CCTCGATTATGG-AAAATTGATGTTTTAGAAATAAAAC
1 CGGGGTTAGAGTATCCCT-GATGATGGAAAAATCGATGTTTTAGAAATAAAAC
*
2006909 CGGGATTAGAGTATCCC
1 CGGGGTTAGAGTATCCC
2006926 CTTGGAAATA
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
51 40 0.63
52 23 0.37
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (52 bp):
CGGGGTTAGAGTATCCCTGATGATGGAAAAATCGATGTTTTAGAAATAAAAC
Found at i:2006949 original size:79 final size:78
Alignment explanation
Indices: 2006858--2007004 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 78
2006848 GAAATAAAAC
* *
2006858 CGGGGTTAGAGTATCCTCGATTATGGAAAATTGATGTTTT-AGAAATAAAACCGGGATTAGAGTA
1 CGGGGTTAGAGTATCCCCAATTATGGAAAATTGATGTTTTGA-AAATAAAACCGGG-TTAGAGTA
2006922 TCCCCTTGGAAATAA
64 TCCCCTTGGAAATAA
* * * *
2006937 CGGGGTTGGAGTATCCCCAATTATGGAAAATTGGTGTTTTGAAAATAAAACTGGGTTGGAGTATC
1 CGGGGTTAGAGTATCCCCAATTATGGAAAATTGATGTTTTGAAAATAAAACCGGGTTAGAGTATC
2007002 CCC
66 CCC
2007005 GACTGTAAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 12 0.20
79 48 0.79
80 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (78 bp):
CGGGGTTAGAGTATCCCCAATTATGGAAAATTGATGTTTTGAAAATAAAACCGGGTTAGAGTATC
CCCTTGGAAATAA
Found at i:2013607 original size:13 final size:14
Alignment explanation
Indices: 2013589--2013617 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
2013579 GGGAATGGAC
2013589 TTTTTGTTGA-GTT
1 TTTTTGTTGATGTT
2013602 TTTTTGTTGATGTT
1 TTTTTGTTGATGTT
2013616 TT
1 TT
2013618 GCTAAGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.07, C:0.00, G:0.21, T:0.72
Consensus pattern (14 bp):
TTTTTGTTGATGTT
Found at i:2014112 original size:20 final size:20
Alignment explanation
Indices: 2014087--2014183 Score: 124
Period size: 20 Copynumber: 4.8 Consensus size: 20
2014077 GTAAAAAGAC
2014087 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
2014107 AGAATGTATCGATAAATTGA
1 AGAATGTATCGATACATTGA
* *
2014127 AGAATGTATTGATACATTCA
1 AGAATGTATCGATACATTGA
*
2014147 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
2014167 AAAATGTATTGATACAT
1 AGAATGTATCGATACAT
2014184 CTGGGTACTT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
19 1 0.02
20 64 0.97
21 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.33
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:2015346 original size:4 final size:4
Alignment explanation
Indices: 2015337--2015361 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
2015327 GGAGTAGTCG
2015337 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
2015362 TTGCTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:2016177 original size:20 final size:19
Alignment explanation
Indices: 2016134--2016226 Score: 71
Period size: 20 Copynumber: 4.7 Consensus size: 19
2016124 AATCCTTGTA
* * *
2016134 TGTATCGATACATATCCAGA
1 TGTATCGATACATGTTCA-T
*
2016154 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
2016174 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
* * *
2016193 TGTATCGATACGTGCATAAT
1 TGTATCGATACATG-TTCAT
*
2016213 TGTATCGATGCATG
1 TGTATCGATACATG
2016227 AAATTGGCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
19 16 0.27
20 42 0.70
21 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:2020262 original size:22 final size:22
Alignment explanation
Indices: 2020234--2020275 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
2020224 TTAAATAGTG
2020234 TGAACAGTGATGTATCGATATA
1 TGAACAGTGATGTATCGATATA
*
2020256 TGAACAGTGATGTATTGATA
1 TGAACAGTGATGTATCGATA
2020276 CTGTGATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (22 bp):
TGAACAGTGATGTATCGATATA
Found at i:2020342 original size:10 final size:10
Alignment explanation
Indices: 2020327--2020427 Score: 71
Period size: 10 Copynumber: 9.7 Consensus size: 10
2020317 GGCTCAATGT
2020327 ACAGTGATGA
1 ACAGTGATGA
2020337 ACAGTGATGTA
1 ACAGTGATG-A
* * *
2020348 TC-GATACATAA
1 ACAG-T-GATGA
2020359 ACAGTGATGA
1 ACAGTGATGA
*
2020369 ATAGTGATGA
1 ACAGTGATGA
2020379 ACAGTGATGTA
1 ACAGTGATG-A
* *
2020390 TC-GATACATGA
1 ACAG-T-GATGA
2020401 ACAGTGATGA
1 ACAGTGATGA
*
2020411 ATAGTGATGA
1 ACAGTGATGA
2020421 ACAGTGA
1 ACAGTGA
2020428 AAAATGAGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
10 50 0.72
11 12 0.17
12 7 0.10
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.25
Consensus pattern (10 bp):
ACAGTGATGA
Found at i:2020362 original size:22 final size:22
Alignment explanation
Indices: 2020333--2020409 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 22
2020323 ATGTACAGTG
2020333 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
* * * *
2020355 ATAAACAGTGATGAATAG-T-G
1 ATGAACAGTGATGTATCGATAC
2020375 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
2020397 ATGAACAGTGATG
1 ATGAACAGTGATG
2020410 AATAGTGATG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 15 0.33
21 2 0.04
22 28 0.62
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:2020375 original size:42 final size:42
Alignment explanation
Indices: 2020329--2020427 Score: 189
Period size: 42 Copynumber: 2.4 Consensus size: 42
2020319 CTCAATGTAC
2020329 AGTGATGAACAGTGATGTATCGATACATAAACAGTGATGAAT
1 AGTGATGAACAGTGATGTATCGATACATAAACAGTGATGAAT
*
2020371 AGTGATGAACAGTGATGTATCGATACATGAACAGTGATGAAT
1 AGTGATGAACAGTGATGTATCGATACATAAACAGTGATGAAT
2020413 AGTGATGAACAGTGA
1 AGTGATGAACAGTGA
2020428 AAAATGAGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.25
Consensus pattern (42 bp):
AGTGATGAACAGTGATGTATCGATACATAAACAGTGATGAAT
Found at i:2020588 original size:21 final size:21
Alignment explanation
Indices: 2020548--2020588 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2020538 GTCAACCTTG
*
2020548 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
2020569 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
2020589 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:2023411 original size:84 final size:84
Alignment explanation
Indices: 2023318--2023471 Score: 195
Period size: 84 Copynumber: 1.8 Consensus size: 84
2023308 CTCATTTCTT
* * * *
2023318 TTCTCCTCTATTTCATTTATTTTCTTTTTAAAAGAAT-T-ATTTTCTAAACTCATTGATTTATTT
1 TTCTCCTCTAATTCACTTAATTTC-TTTT-AAAGAATATCATTCTCTAAACTCATTGATTTATTT
2023381 TCATTTTGTAACTCTTTCATA
64 TCATTTTGTAACTCTTTCATA
* * * *
2023402 TTCTTCTCTAATTCACTTAATTTCTTTTCAAGAATATCATTCTCTACACTTATTGATTTATTTTC
1 TTCTCCTCTAATTCACTTAATTTCTTTTAAAGAATATCATTCTCTAAACTCATTGATTTATTTTC
*
2023467 TTTTT
66 ATTTT
2023472 TGAGTTTAGA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
82 6 0.10
83 5 0.08
84 48 0.81
ACGTcount: A:0.24, C:0.17, G:0.03, T:0.56
Consensus pattern (84 bp):
TTCTCCTCTAATTCACTTAATTTCTTTTAAAGAATATCATTCTCTAAACTCATTGATTTATTTTC
ATTTTGTAACTCTTTCATA
Found at i:2025031 original size:34 final size:35
Alignment explanation
Indices: 2024993--2025059 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2024983 CCTTACAATA
2024993 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
2025027 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
2025060 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:2025527 original size:22 final size:22
Alignment explanation
Indices: 2025499--2025574 Score: 111
Period size: 22 Copynumber: 3.5 Consensus size: 22
2025489 TTAAATAGTG
2025499 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
* * *
2025521 TGAACAGTGATGAATAG-T-GA
1 TGAACAGTGATGTATCGATACA
2025541 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
2025563 TGAACAGTGATG
1 TGAACAGTGATG
2025575 AACAGTGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 16 0.35
21 2 0.04
22 28 0.61
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (22 bp):
TGAACAGTGATGTATCGATACA
Found at i:2025539 original size:10 final size:10
Alignment explanation
Indices: 2025520--2025582 Score: 65
Period size: 10 Copynumber: 6.1 Consensus size: 10
2025510 GTATCGATAC
2025520 ATGAACAGTG
1 ATGAACAGTG
*
2025530 ATGAATAGTG
1 ATGAACAGTG
2025540 ATGAACAGTG
1 ATGAACAGTG
* *
2025550 ATGTATC-GATAC
1 ATG-AACAG-T-G
2025562 ATGAACAGTG
1 ATGAACAGTG
2025572 ATGAACAGTG
1 ATGAACAGTG
2025582 A
1 A
2025583 AAAAAGAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 33 0.77
11 6 0.14
12 4 0.09
ACGTcount: A:0.40, C:0.10, G:0.27, T:0.24
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:2025550 original size:42 final size:42
Alignment explanation
Indices: 2025492--2025582 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
2025482 GCTTTTATTA
2025492 AATAGTG-TGAACAGTGATGTATCGATACATGAACAGTGATG
1 AATAGTGATGAACAGTGATGTATCGATACATGAACAGTGATG
2025533 AATAGTGATGAACAGTGATGTATCGATACATGAACAGTGATG
1 AATAGTGATGAACAGTGATGTATCGATACATGAACAGTGATG
*
2025575 AACAGTGA
1 AATAGTGA
2025583 AAAAAGAGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 7 0.15
42 41 0.85
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.25
Consensus pattern (42 bp):
AATAGTGATGAACAGTGATGTATCGATACATGAACAGTGATG
Found at i:2025629 original size:13 final size:13
Alignment explanation
Indices: 2025611--2025635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2025601 TGCCAATGCT
2025611 ATGTATCGATACA
1 ATGTATCGATACA
2025624 ATGTATCGATAC
1 ATGTATCGATAC
2025636 TTAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2026486 original size:39 final size:39
Alignment explanation
Indices: 2026386--2026500 Score: 178
Period size: 38 Copynumber: 3.0 Consensus size: 39
2026376 AGTTTTACTA
* * * *
2026386 CTAAACACCTCAATCTCTGTAAAATATAAGCTATTATAT
1 CTAATCACCTCAATTTCTATAAAATATAAGCTGTTATAT
2026425 CTAATCA-CTCAATTTCTATAAAATATAAGCTGTTATAT
1 CTAATCACCTCAATTTCTATAAAATATAAGCTGTTATAT
*
2026463 CTAATCACCTCAATTTCTATAAAATAGAAGCTGTTATA
1 CTAATCACCTCAATTTCTATAAAATATAAGCTGTTATA
2026501 AATTTTCACT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 35 0.50
39 35 0.50
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (39 bp):
CTAATCACCTCAATTTCTATAAAATATAAGCTGTTATAT
Found at i:2028208 original size:5 final size:5
Alignment explanation
Indices: 2028198--2028223 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
2028188 GCATTTGTTC
2028198 TTTCT TTTCT TTTCT TTTCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT T
2028224 CCTATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:2028762 original size:29 final size:29
Alignment explanation
Indices: 2028738--2028816 Score: 158
Period size: 29 Copynumber: 2.7 Consensus size: 29
2028728 TCTAGCAACG
2028738 CTGTAGTATGAGTTTGAAAATTAGCAGCA
1 CTGTAGTATGAGTTTGAAAATTAGCAGCA
2028767 CTGTAGTATGAGTTTGAAAATTAGCAGCA
1 CTGTAGTATGAGTTTGAAAATTAGCAGCA
2028796 CTGTAGTATGAGTTTGAAAAT
1 CTGTAGTATGAGTTTGAAAAT
2028817 GATGTAAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (29 bp):
CTGTAGTATGAGTTTGAAAATTAGCAGCA
Found at i:2029632 original size:79 final size:77
Alignment explanation
Indices: 2029540--2030429 Score: 549
Period size: 79 Copynumber: 11.3 Consensus size: 77
2029530 TCATTTATGT
* * * ** * * * **
2029540 TTTTATTTTTAAAATACCAATTTTCCACCGTCATGGATACTCTAAGCTTGTTGTTTTCGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTT-TTTTCGAGGGGA
2029605 TACTCCAACCCTTA
65 TACTCCAA-CCTTA
* *** * * * **
2029619 TTTTATTTCTAAAATAATGATTTTTCACAAT-TGAGGATACTTCAACCCTGTTATTTTTAAGGGG
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAG-GGATACTCCAACCCCGTT-TTTTCGAGGGG
* * *
2029683 ACACTCCAAACTCGA
64 ATACTCCAACCT-TA
* * * *
2029698 TTTTATTTTTAAAACACCAATTTTTCACAATCAGGGATTCTCCAACCCCGTTATTTCTGAGGAGA
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTTTTTTC-GAGGGGA
*
2029763 TACTCCAACCCTA
65 TACTCCAACCTTA
* * * * * * * * * **
2029776 GTTTTATTCCTAAAACATCGATTTTTCACCATCATGGATACTCCATCCCTGTTATTTCTAAGAAG
1 -TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTTTTTTC-GAGGGG
*
2029841 ATACTCCAACCTCA
64 ATACTCCAACCTTA
* * * * * **
2029855 GTTTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCTAACCCCGTTATTTTTAAGGG
1 --TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTT-TTTTCGAGGG
* * ***
2029920 GATGCTCTAACCCCGG
63 GATACTCCAA-CCTTA
* * * * **
2029936 CTTTATTTCTAAAACACTAATTTTCCACCATTGGGGATACTCCAACCCCGTTGTTTTCGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTT-TTTTCGAGGGGA
2030001 TACTCCAACCTTGA
65 TACTCCAACCTT-A
* * * * * *
2030015 TTTTATTTCTAAAACACTAATTTTTCACAATTAAGGATACTTCAACCCTGTTATTTTCGAGGGTA
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTT-TTTTCGAGGGGA
* *
2030080 TACTCTAACCTCGA
65 TACTCCAACCT-TA
* *
2030094 TTTTATTTTTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCTGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTTTTTTC-GAGGGGA
*
2030159 TACTCCAACCCTA
65 TACTCCAACCTTA
* * * * * * * * * *
2030172 GTTTTATTCCTAAGAA-TCCGATTTTTCACCAT-TGTAGATACTCTATCCCCGTTATTTTTGAGA
1 -TTTTATTTCTAA-AACACCAATTTTTCACAATCAG-GGATACTCCAACCCCGTT-TTTTCGAGG
* **
2030235 AGATACTCCAACCCCA
62 GGATACTCCAACCTTA
* ** * *
2030251 GTATTTATTTCT------CCAATTTTTCACAATC-GACGATACTCTGACCCCATTATTTCTGAGG
1 -T-TTTATTTCTAAAACACCAATTTTTCACAATCAG-GGATACTCCAACCCCGTTTTTTC-GAGG
**
2030309 GGATACTCCAACCCTGG
62 GGATACTCCAA-CCTTA
* * ** * * * *
2030326 CTTTATTTCTAAAATACTGATTTTTCACCATCGGGGATACTCCAACCTCGTTGTTTTCTGAGCGG
1 TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTT-TTTTC-GAGGGG
* *
2030391 ATACTTCAACCTCGA
64 ATACTCCAACCT-TA
* *
2030406 TTTTATTTCCAAAACACTAATTTT
1 TTTTATTTCTAAAACACCAATTTT
2030430 CCATAATTGG
Statistics
Matches: 633, Mismatches: 150, Indels: 55
0.76 0.18 0.07
Matches are distributed among these distances:
73 12 0.02
74 41 0.06
75 2 0.00
78 14 0.02
79 450 0.71
80 109 0.17
81 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (77 bp):
TTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCGTTTTTTCGAGGGGAT
ACTCCAACCTTA
Found at i:2029828 original size:158 final size:158
Alignment explanation
Indices: 2029540--2030429 Score: 641
Period size: 158 Copynumber: 5.7 Consensus size: 158
2029530 TCATTTATGT
* * ** * * * ** *
2029540 TTTTATTTTTAAAATACCAATTTTCCACCGTCATGGATACTCTAAGCTTGTTGTTTTCGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
* * * *
2029605 TACTCCAACCCTTA-TTTTATTTCTAAAATAAT-GATTTTTCACAAT-TGAGGATACTTCAACCC
66 TACTCCAACCC-TAGTTTTATTTCTAAAA-CATCAATTTTTCACAATCAG-GGATACTCCAACCC
* * * *
2029667 TGTTATTTTTAAGGGGACACTCCAAACTCGA
128 CGTTATTTCTAAGGGGATACTCCAACCTCGA
* * * *
2029698 TTTTATTTTTAAAACACCAATTTTTCACAATCAGGGATTCTCCAACCCCGTTA-TTTCTGAGGAG
1 TTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTC-GAGGGG
* * * * * *
2029762 ATACTCCAACCCTAGTTTTATTCCTAAAACATCGATTTTTCACCATCATGGATACTCCATCCCTG
65 ATACTCCAACCCTAGTTTTATTTCTAAAACATCAATTTTTCACAATCAGGGATACTCCAACCCCG
** *
2029827 TTATTTCTAAGAAGATACTCCAACCTCAGT
130 TTATTTCTAAGGGGATACTCCAACCTC-GA
* * * * **
2029857 TTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCTAACCCCGTTATTTTTAAGGGGA
1 TTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
* * ** * * * **
2029922 TGCTCTAACCCCGGCTTTATTTCTAAAACA-CTAATTTTCCACCATTGGGGATACTCCAACCCCG
66 TACTCCAACCCTAGTTTTATTTCTAAAACATC-AATTTTTCACAATCAGGGATACTCCAACCCCG
* * *
2029986 TTGTTT-TCGAGGGGATACTCCAACCTTGA
130 TTATTTCT-AAGGGGATACTCCAACCTCGA
* * * * * * *
2030015 TTTTATTTCTAAAACACTAATTTTTCACAATTAAGGATACTTCAACCCTGTTATTTTCGAGGGTA
1 TTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
* * * *
2030080 TACTCTAA-CCTCGATTTTATTTTTAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCG
66 TACTCCAACCCTAG-TTTTATTTCTAAAACATCAATTTTTCACAATCAGGGATACTCCAACCCCG
* *
2030144 TTATTTCTGAGGGGATACTCCAACC-CTA
130 TTATTTCTAAGGGGATACTCCAACCTCGA
* * * * * * * * * * *
2030172 GTTTTATTCCTAAGAA-TCCGATTTTTCACCAT-TGTAGATACTCTATCCCCGTTATTTTTGAGA
1 -TTTTATTTCTAA-AACACCAATTTTCCACAATCAG-GGATACTCCAACCCCGTTATTTTCGAGG
* * * **
2030235 AGATACTCCAACCCCAGTATTTATTTCT----C--CAATTTTTCACAATC-GACGATACTCTGAC
63 GGATACTCCAACCCTAGT-TTTATTTCTAAAACATCAATTTTTCACAATCAG-GGATACTCCAAC
* * *
2030293 CCCATTATTTCTGAGGGGATACTCCAACC-CTGG
126 CCCGTTATTTCTAAGGGGATACTCCAACCTC-GA
* * ** * * * * * *
2030326 CTTTATTTCTAAAATACTGATTTTTCACCATCGGGGATACTCCAACCTCGTTGTTTTCTGAGCGG
1 TTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTC-GAGGGG
* * *
2030391 ATACTTCAA-CCTCGATTTTATTTCCAAAACA-CTAATTTT
65 ATACTCCAACCCTAG-TTTTATTTCTAAAACATC-AATTTT
2030430 CCATAATTGG
Statistics
Matches: 582, Mismatches: 122, Indels: 55
0.77 0.16 0.07
Matches are distributed among these distances:
152 3 0.01
153 106 0.18
154 14 0.02
155 1 0.00
157 13 0.02
158 300 0.52
159 142 0.24
160 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (158 bp):
TTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
TACTCCAACCCTAGTTTTATTTCTAAAACATCAATTTTTCACAATCAGGGATACTCCAACCCCGT
TATTTCTAAGGGGATACTCCAACCTCGA
Found at i:2030224 original size:237 final size:237
Alignment explanation
Indices: 2029603--2030432 Score: 611
Period size: 238 Copynumber: 3.5 Consensus size: 237
2029593 TTTTCGAGGG
** * *** * * *
2029603 GATACTCCAACC-CTTATTTTATTTCTAAAATAATGATTTTTCACAAT-TGAGGATACTTCAACC
1 GATACTCCAACCTCAGATTTTATTTCTAAAACACCAATTTTCCACAATCAG-GGATACTCCAACC
* * * * * * ** * * *
2029666 CTGTTATTTTTAAGGGGACACTCCAAACTC-GATTTTATTTTTAAAACACCAATTTTTCACAATC
65 CCGTTATTTCTAAGGGGATACTCCAACCCCAG-CTTTATTCCTAAAACACTAATTTTCCACCAT-
* * *
2029730 AGG-GATTCTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCTAGTTTTATTCCTAAAACAT
128 TGGAGATACTCCAACCCCGTTTTTTC-GAGGAGATACTCCAACCCTAGTTTTATTCCTAAAACAT
* * * *
2029794 CGATTTTTCACCATCATGGATACTCCATCCCTGTTATTTCTAAGAA
192 CAATTTTTCACAATCAAGGATACTCCAACCCTGTTATTTCTAAGAA
* * * * *
2029840 GATACTCCAACCTCAGTTTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCTAACCC
1 GATACTCCAACCTCAGATTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCC
* * * * *
2029905 CGTTATTTTTAAGGGGATGCTCTAACCCCGGCTTTATTTCTAAAACACTAATTTTCCACCATTGG
66 CGTTATTTCTAAGGGGATACTCCAACCCCAGCTTTATTCCTAAAACACTAATTTTCCACCATTGG
* * * *
2029970 GGATACTCCAACCCCGTTGTTTTCGAGGGGATACTCCAA-CCTTGATTTTATTTCTAAAACA-CT
131 AGATACTCCAACCCCGTT-TTTTCGAGGAGATACTCCAACCCTAG-TTTTATTCCTAAAACATC-
* * * *
2030033 AATTTTTCACAATTAAGGATACTTCAACCCTGTTATTT-T-CGAGG
193 AATTTTTCACAATCAAGGATACTCCAACCCTGTTATTTCTAAGA-A
* * *
2030077 GTATACTCTAACCTC-GATTTTATTTTTAAAACACCAATTTTTCACAATCAGGGATACTCCAACC
1 G-ATACTCCAACCTCAGATTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACC
* * * * *
2030141 CCGTTATTTCTGAGGGGATACTCCAACCCTAGTTTTATTCCTAAGAATC-C-GATTTTTCACCAT
65 CCGTTATTTCTAAGGGGATACTCCAACCCCAGCTTTATTCCTAA-AA-CACTAATTTTCCACCAT
* * * * * * *
2030204 TGTAGATACTCTATCCCCGTTATTTTTGAGAAGATACTCCAACCCCAGTATTTATTTCT----C-
128 TGGAGATACTCCAACCCCGTT-TTTTCGAGGAGATACTCCAACCCTAGT-TTTATTCCTAAAACA
* * ** ** * **
2030264 -CAATTTTTCACAATCGACGATACTCTGACCCCATTATTTCTGAGGG
191 TCAATTTTTCACAATCAAGGATACTCCAACCCTGTTATTTCTAAGAA
* ** * ** * * * *
2030310 GATACTCCAACC-CTGGCTTTATTTCTAAAATACTGATTTTTCACCATCGGGGATACTCCAACCT
1 GATACTCCAACCTCAGATTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCC
* * * * * *
2030374 CGTTGTTTTCTGAGCGGATACTTCAACCTC-GATTTTATTTCC-AAAACACTAATTTTCCA
66 CGTT-ATTTCTAAGGGGATACTCCAACCCCAG-CTTTA-TTCCTAAAACACTAATTTTCCA
2030433 TAATTGGTTT
Statistics
Matches: 482, Mismatches: 90, Indels: 46
0.78 0.15 0.07
Matches are distributed among these distances:
231 2 0.00
232 89 0.18
233 38 0.08
234 6 0.01
236 2 0.00
237 145 0.30
238 193 0.40
239 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (237 bp):
GATACTCCAACCTCAGATTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAACCC
CGTTATTTCTAAGGGGATACTCCAACCCCAGCTTTATTCCTAAAACACTAATTTTCCACCATTGG
AGATACTCCAACCCCGTTTTTTCGAGGAGATACTCCAACCCTAGTTTTATTCCTAAAACATCAAT
TTTTCACAATCAAGGATACTCCAACCCTGTTATTTCTAAGAA
Found at i:2030411 original size:153 final size:151
Alignment explanation
Indices: 2029971--2030414 Score: 427
Period size: 153 Copynumber: 2.9 Consensus size: 151
2029961 CACCATTGGG
* * * * * *
2029971 GATACTCCAACCCCGTTGTTT-TCGAGGGGATACTCCAACCTTGATTTTATTTCTAAAACACTAA
1 GATACTCCAACCCCATTATTTCT-GAGGGGATACTCCAACCCTGGTTTTATTTCTAAAATACTGA
* * *
2030035 TTTTTCACAATTAAGGATACTTCAACCCTGTTATTTTC-GAGGGTATAC-TCTAACCTCGATTTT
65 TTTTTCACCATTGAGGATACTCCAACCC-GTTATTTTCTGAGGG-ATACTTC-AACCTCGATTTT
*
2030098 ATTTTTAAAACACCAATTTTTCACAATCAGG
127 A--TTT----CACCAATTTTTCACAATCAGC
* * * *
2030129 GATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCTAGTTTTATTCCTAAGAAT-CCGA
1 GATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCTGGTTTTATTTCTAA-AATACTGA
* * * * *
2030193 TTTTTCACCATTGTA-GATACTCTATCCCCGTTATTTT-TGAGAAGATACTCCAACC-CCAGTAT
65 TTTTTCACCATTG-AGGATACTCCA-ACCCGTTATTTTCTGAG-GGATACTTCAACCTCGA-T-T
*
2030255 TTATTTCTCCAATTTTTCACAATC-GAC
125 TTATTTCACCAATTTTTCACAATCAG-C
** *
2030282 GATACTCTGACCCCATTATTTCTGAGGGGATACTCCAACCCTGGCTTTATTTCTAAAATACTGAT
1 GATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCTGGTTTTATTTCTAAAATACTGAT
* * *
2030347 TTTTCACCATCGGGGATACTCCAACCTCGTTGTTTTCTGAGCGGATACTTCAACCTCGATTTTAT
66 TTTTCACCATTGAGGATACTCCAACC-CGTTATTTTCTGAG-GGATACTTCAACCTCGATTTTAT
2030412 TTC
129 TTC
2030415 CAAAACACTA
Statistics
Matches: 237, Mismatches: 34, Indels: 35
0.77 0.11 0.11
Matches are distributed among these distances:
152 6 0.03
153 106 0.45
154 16 0.07
155 2 0.01
157 5 0.02
158 89 0.38
159 13 0.05
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (151 bp):
GATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCTGGTTTTATTTCTAAAATACTGAT
TTTTCACCATTGAGGATACTCCAACCCGTTATTTTCTGAGGGATACTTCAACCTCGATTTTATTT
CACCAATTTTTCACAATCAGC
Found at i:2030488 original size:59 final size:60
Alignment explanation
Indices: 2030380--2030495 Score: 155
Period size: 59 Copynumber: 1.9 Consensus size: 60
2030370 ACCTCGTTGT
* *
2030380 TTTCTGAGCGGATACTTCAACCTCGATTTTATTTCCAAAACACTAATTTTCCATAATTGG
1 TTTCCGAGCGGATACTTCAACCTCGAGTTTATTTCCAAAACACTAATTTTCCATAATTGG
* * * *
2030440 TTTCCGAGGGGATACTTCAACC-C-AGGTTTATTTCCAAAACATTGATTTTTCATAAT
1 TTTCCGAGCGGATACTTCAACCTCGA-GTTTATTTCCAAAACACTAATTTTCCATAAT
2030496 CGGAGATCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 1 0.02
59 28 0.57
60 20 0.41
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (60 bp):
TTTCCGAGCGGATACTTCAACCTCGAGTTTATTTCCAAAACACTAATTTTCCATAATTGG
Found at i:2033293 original size:79 final size:79
Alignment explanation
Indices: 2033178--2034121 Score: 849
Period size: 79 Copynumber: 12.0 Consensus size: 79
2033168 TTTAAAATAA
* * * * *
2033178 TGATTTTCCACCATCGGGGATACTCTAACCCCGTTATTTTTGAGGGGATAATCCAACCCCAATTT
1 TGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTT
*
2033243 TATCTCCAAAACAC
66 TATTTCCAAAACAC
* * * * * * * *
2033257 TAATTTTCCACAATCGAGGATACTCCAACCCTGTTATTTTCT-AAGAGATAGTCTAACCTCGATT
1 TGATTTTCCACAATCGGGGATACTCCAACCCTGTTA-TTTCTGAGGGGATACTCCAACCCCAATT
*
2033321 TTATTTTCAAAACA-
65 TTATTTCCAAAACAC
* * * ** * **
2033335 TCGATTTTTCACAATCGAGGATACTTCAACCCCATTATTGTC-GAGAGGATACTCCAACCTTAAT
1 T-GATTTTCCACAATCGGGGATACTCCAACCCTGTTATT-TCTGAGGGGATACTCCAACCCCAAT
*
2033399 TTT-GTTCCTAAAACA-
64 TTTATTTCC-AAAACAC
* * * ** * * *
2033414 TCGATTTTCCACCATCGTGGATATTCCAACCCCATTATTTCTGAAGGGATACTCCAACCTCAGTT
1 T-GATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATT
*
2033479 CTTATTTCTAAAACA-
65 -TTATTTCCAAAACAC
* * * * * * **
2033494 TCGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCTAACTCCAGCT
1 T-GATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATT
* *
2033559 TTATTTCTAAAATAC
65 TTATTTCCAAAACAC
* * * * * *
2033574 TGATTTTCCACCATCGGGGATACTCCAACCCTGTTGTTTCGGAGGGGATACTCTAACCACGATTT
1 TGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTT
2033639 TATTTCCAAAACAC
66 TATTTCCAAAACAC
* *
2033653 TGATTTTCCACAATCGGGGATACTCCAACCCGGTTATTTCTGAGGGGATACTCCAACCCTC-GTT
1 TGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCC-CAATT
*
2033717 TTATTTCCAAAACAT
65 TTATTTCCAAAACAC
* * * * * * * *
2033732 TAATTTTTCACAATTGGGGATACTCTAA-CCTCGTTATTTCTGAAGGGATACTCTAACCCTAGTT
1 TGATTTTCCACAATCGGGGATACTCCAACCCT-GTTATTTCTGAGGGGATACTCCAACCCCAATT
2033796 TTA-TTCCTAAAACAC
65 TTATTTCC-AAAACAC
* * * *
2033811 TGATTTTCCACTATCGAGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCTAACCCCGATTT
1 TGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCC-AATT
* *
2033876 TTATTTCTAAAATAC
65 TTATTTCCAAAACAC
* * * * ****
2033891 TGATTTTTCACAATCGGGGATACTCTAA-CCTCGTTATTTTTTAGGGGATACTCCAACCCTGGCT
1 TGATTTTCCACAATCGGGGATACTCCAACCCT-GTTATTTCTGAGGGGATACTCCAACCCCAATT
* *
2033955 TTATGTCTAAAACA-
65 TTATTTCCAAAACAC
* * * *
2033969 TAGATTTTTCATAATCGGGGATACTCCAA-CCTCGTTATTTCTGAGAGGATACTCCAACCCCGAT
1 T-GATTTTCCACAATCGGGGATACTCCAACCCT-GTTATTTCTGAGGGGATACTCCAACCCCAAT
2034033 TTTATTT-CAAAACAC
64 TTTATTTCCAAAACAC
* * * * * * *
2034048 -GATTTT-CACCATCGAGGATACTCTAACCCCGTTATTT-TCGAGGGGATGCTCTAACCCCATTT
1 TGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCT-GAGGGGATACTCCAACCCCAATT
*
2034110 TTATCTCCAAAA
65 TTATTTCCAAAA
2034122 TATTAAATTT
Statistics
Matches: 717, Mismatches: 126, Indels: 46
0.81 0.14 0.05
Matches are distributed among these distances:
75 1 0.00
76 46 0.06
77 13 0.02
78 21 0.03
79 499 0.70
80 131 0.18
81 6 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
TGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTT
TATTTCCAAAACAC
Found at i:2033771 original size:317 final size:313
Alignment explanation
Indices: 2033178--2034084 Score: 1069
Period size: 317 Copynumber: 2.9 Consensus size: 313
2033168 TTTAAAATAA
* * * * *
2033178 TGATTTTCCACCATCGGGGATACTCTAACCCCGTTATTTTTGAGGGGATAATCCAACCCCAATTT
1 TGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCTAACCCCAATTT
* * * * * * * *
2033243 TATCTCCAAAACACTAATTTTCCACAATCGAGGATACTCCAACCCTGTTATTTTCTAAGAGATAG
66 TATTTCTAAAATACTGATTTTCCACAATCGGGGATACTCCAACCCTGTTA-TTTCTAGGGGATAC
* * * * *
2033308 TCTAACCTCGATTTTATTTTCAAAACATCGATTTTTCACAATCGAGGATACTTCAACCCCATTAT
130 TCTAACC-CGATTTTATTTCCAAAACATAGATTTTTCACAATCGGGGATACTCCAA-CCCGTTAT
* ** * * *
2033373 TGTC-GAGAGGATACTCCAACCTTAATTTT-GTTCCTAAAACATCGATTTTCCACCATCGTGGAT
193 T-TCTGAGAGGATACTCCAACCCTCGTTTTATTTCC-AAAACATCGATTTTTCACCATCGAGGAT
* * * *
2033436 ATTCCAACCCCATTATTTCTGAAGGGATACTCCAA-CCTCAGTTCTTATTTCTAAAACA-
256 ACTCTAACCCCGTTATTTCTGAAGGGATACTCCAACCCT-AGTT-TTATTCCTAAAACAC
* * **
2033494 TCGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCTAACTCCAGCT
1 T-GATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCTAACCCCAATT
* * *
2033559 TTATTTCTAAAATACTGATTTTCCACCATCGGGGATACTCCAACCCTGTTGTTTCGGAGGGGATA
65 TTATTTCTAAAATACTGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTC-TAGGGGATA
*
2033624 CTCTAACCACGATTTTATTTCCAAAACACT-GATTTTCCACAATCGGGGATACTCCAACCCGGTT
129 CTCTAACC-CGATTTTATTTCCAAAACA-TAGATTTTTCACAATCGGGGATACTCCAACCC-GTT
* ** * * *
2033688 ATTTCTGAGGGGATACTCCAACCCTCGTTTTATTTCCAAAACATTAATTTTTCACAATTGGGGAT
191 ATTTCTGAGAGGATACTCCAACCCTCGTTTTATTTCCAAAACATCGATTTTTCACCATCGAGGAT
* *
2033753 ACTCTAACCTCGTTATTTCTGAAGGGATACTCTAACCCTAGTTTTATTCCTAAAACAC
256 ACTCTAACCCCGTTATTTCTGAAGGGATACTCCAACCCTAGTTTTATTCCTAAAACAC
* * * *
2033811 TGATTTTCCACTATCGAGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCTAACCCCGATTT
1 TGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCTAACCCC-AATT
* * *
2033876 TTATTTCTAAAATACTGATTTTTCACAATCGGGGATACTCTAA-CCTCGTTATTTTTTAGGGGAT
65 TTATTTCTAAAATACTGATTTTCCACAATCGGGGATACTCCAACCCT-GTTA-TTTCTAGGGGAT
* ** * * *
2033940 ACTCCAACCCTGGCTTTATGTCTAAAACATAGATTTTTCATAATCGGGGATACTCCAACCTCGTT
128 ACTCTAACCC-GATTTTATTTCCAAAACATAGATTTTTCACAATCGGGGATACTCCAACC-CGTT
2034005 ATTTCTGAGAGGATACTCCAACCC-CGATTTTATTT-CAAAACA-CGA-TTTTCACCATCGAGGA
191 ATTTCTGAGAGGATACTCCAACCCTCG-TTTTATTTCCAAAACATCGATTTTTCACCATCGAGGA
2034066 TACTCTAACCCCGTTATTT
255 TACTCTAACCCCGTTATTT
2034085 TCGAGGGGAT
Statistics
Matches: 506, Mismatches: 70, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
314 31 0.06
315 1 0.00
316 91 0.18
317 371 0.73
318 12 0.02
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (313 bp):
TGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCTAACCCCAATTT
TATTTCTAAAATACTGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTCTAGGGGATACT
CTAACCCGATTTTATTTCCAAAACATAGATTTTTCACAATCGGGGATACTCCAACCCGTTATTTC
TGAGAGGATACTCCAACCCTCGTTTTATTTCCAAAACATCGATTTTTCACCATCGAGGATACTCT
AACCCCGTTATTTCTGAAGGGATACTCCAACCCTAGTTTTATTCCTAAAACAC
Found at i:2033905 original size:396 final size:395
Alignment explanation
Indices: 2033162--2034135 Score: 1159
Period size: 396 Copynumber: 2.5 Consensus size: 395
2033152 CATTCATGTT
* * * *
2033162 TTTATTTTTAAAATAATGATTTTCCACCATCGGGGATACTCTAACCCCGTTATTTTTGAGGGGAT
1 TTTATTTCTAAAAT-ATGATTTTCCACCATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGAT
* * * * *
2033227 AATCCAACCCCAATTTTATCTCCAAAACACTAATTTTCCACAATCGAGGATACTCCAACCCTGTT
65 ACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCGAGGATACTCCAACCCCGTT
* * * * **
2033292 ATTTTCT-AAGAGATAGTCTAA-CCTCGATTTTATTTTCAAAACATCGATTTTTCACAATCGAGG
130 A-TTTCTGAGGGGATACTCTAACCCTCG-TTTTATTTCCAAAACATTAATTTTTCACAATCGAGG
* *
2033355 ATACTTCAACCCCATTATTGTCGAGAGGATACTCCAACCTTAATTTTGTTCCTAAAACATCGATT
193 ATACTTCAACCCCATTATTGTCGAGAGGATACTCCAACCCTAATTTTATTCCTAAAACATCGATT
* * *
2033420 TTCCACCATCGTGGATATTCCAACCCCATTATTTCTGAAGGGATACTCCAACCTCAGTTCTTATT
258 TTCCACCATCGAGGATACTCCAACCCCATTATTTCTGAAGGGATACTCCAACCCCAGTTCTTATT
*
2033485 TCTAAAACATCGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCTA
323 TCTAAAACATCGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCA
2033550 ACTCC-AGC
388 AC-CCTAGC
* *
2033558 TTTATTTCTAAAATACTGATTTTCCACCATCGGGGATACTCCAACCCTGTTGTTTCGGAGGGGAT
1 TTTATTTCTAAAATA-TGATTTTCCACCATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGAT
* * * *
2033623 ACTCTAACCACGATTTTATTTCCAAAACACTGATTTTCCACAATCGGGGATACTCCAACCCGGTT
65 ACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCGAGGATACTCCAACCCCGTT
* * *
2033688 ATTTCTGAGGGGATACTCCAACCCTCGTTTTATTTCCAAAACATTAATTTTTCACAATTGGGGAT
130 ATTTCTGAGGGGATACTCTAACCCTCGTTTTATTTCCAAAACATTAATTTTTCACAATCGAGGAT
* * * *
2033753 AC-TCTAACCTCGTTATT-TCTGA-AGGGATACTCTAACCCTAGTTTTATTCCTAAAACA-CTGA
195 ACTTC-AACCCCATTATTGTC-GAGA-GGATACTCCAACCCTAATTTTATTCCTAAAACATC-GA
* ** * * *
2033814 TTTTCCACTATCGAGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCTAACCCC-GATTTTT
256 TTTTCCACCATCGAGGATACTCCAACCCCATTATTTCTGAAGGGATACTCCAACCCCAG-TTCTT
* * * * ***
2033878 ATTTCTAAAATA-CTGATTTTTCACAATCGGGGATACTCTAACCTCGTTATTTTTTAGGGGATAC
320 ATTTCTAAAACATC-GATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCCGAGGGGATAC
*
2033942 TCCAACCCTGGC
384 TCCAACCCTAGC
* * * ** *
2033954 TTTATGTCTAAAACATAGATTTTTCATAATCGGGGATACTCCAA-CCTCGTTATTTCTGAGAGGA
1 TTTATTTCTAAAATAT-GATTTTCCACCATCGGGGATACTCCAACCCT-GTTATTTCTGAGGGGA
* *
2034018 TACTCCAACCCCGATTTTATTT-CAAAACAC-GATTTT-CACCATCGAGGATACTCTAACCCCGT
64 TACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCGAGGATACTCCAACCCCGT
* * * *
2034080 TATTT-TCGAGGGGATGCTCTAACCC-CATTTTTATCTCCAAAATATTAAATTTTTCA
129 TATTTCT-GAGGGGATACTCTAACCCTC-GTTTTATTTCCAAAACATT-AATTTTTCA
2034136 TCAAGGAATA
Statistics
Matches: 497, Mismatches: 66, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
392 2 0.00
393 59 0.12
394 15 0.03
395 28 0.06
396 388 0.78
397 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (395 bp):
TTTATTTCTAAAATATGATTTTCCACCATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGATA
CTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCGAGGATACTCCAACCCCGTTA
TTTCTGAGGGGATACTCTAACCCTCGTTTTATTTCCAAAACATTAATTTTTCACAATCGAGGATA
CTTCAACCCCATTATTGTCGAGAGGATACTCCAACCCTAATTTTATTCCTAAAACATCGATTTTC
CACCATCGAGGATACTCCAACCCCATTATTTCTGAAGGGATACTCCAACCCCAGTTCTTATTTCT
AAAACATCGATTTTCCACAATCGAGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACC
CTAGC
Found at i:2040796 original size:20 final size:19
Alignment explanation
Indices: 2040706--2040795 Score: 74
Period size: 20 Copynumber: 4.6 Consensus size: 19
2040696 TCAGTTTCAC
*
2040706 GTATCGATACAAT-TATGCAT
1 GTATCGATACAATGAAT--AT
* *
2040726 GTATCGATACAGTGAACAT
1 GTATCGATACAATGAATAT
* *
2040745 GTATCGATACAAAGCATAAT
1 GTATCGATACAATGAAT-AT
* *
2040765 GTATCGATACATCTGGATAT
1 GTATCGATACA-ATGAATAT
2040785 GTATCGATACA
1 GTATCGATACA
2040796 TACAAGGGTT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
19 15 0.26
20 38 0.67
21 4 0.07
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
GTATCGATACAATGAATAT
Found at i:2043328 original size:20 final size:20
Alignment explanation
Indices: 2043297--2043356 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
2043287 ATCTAGGTTT
2043297 TTTCAGATGTATCGATACATC
1 TTTCA-ATGTATCGATACATC
2043318 TTTCAATGTATCGATACATC
1 TTTCAATGTATCGATACATC
2043338 TTTCAATGTATCGATACAT
1 TTTCAATGTATCGATACAT
2043357 TCTGGAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
20 34 0.87
21 5 0.13
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (20 bp):
TTTCAATGTATCGATACATC
Found at i:2048636 original size:13 final size:13
Alignment explanation
Indices: 2048618--2048669 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
2048608 AGCTTCGTAG
2048618 CGATACATTGTAT
1 CGATACATTGTAT
2048631 CGATACAATACTTATGTAT
1 CGATAC---A-TT--GTAT
2048650 CGATACATTGTAT
1 CGATACATTGTAT
2048663 CGATACA
1 CGATACA
2048670 AATTGTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:2049523 original size:52 final size:49
Alignment explanation
Indices: 2049407--2049739 Score: 279
Period size: 49 Copynumber: 6.8 Consensus size: 49
2049397 TGAAGAATGA
* * * * *
2049407 CAATGTGCTGATTCATGGCTAGCGACATTAGACTTGAAGA-AAA-ATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGC
* * ** ** *
2049454 CAATGTGCTAAGACAAGGCCAGCGACATTGGGTTTAGGAATGTTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-GATAAAGATGC
* * *
2049506 CAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGC
* * * * *
2049555 TAATGTGCTGATTTAAGGCCAGCGACATTGG-TTTGAAAGATGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGAT---AAAGATGC
* * * * *
2049607 CAATATACTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGC
* *
2049656 CAATGTGCTGATTCAACGCCAGCGACATTGGACTTAAAG-----G-TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGC
*
2049699 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGA
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTA-AAGA
2049740 AGATGCCACC
Statistics
Matches: 230, Mismatches: 44, Indels: 26
0.77 0.15 0.09
Matches are distributed among these distances:
43 36 0.16
44 4 0.02
47 27 0.12
48 2 0.01
49 84 0.37
50 3 0.01
51 3 0.01
52 69 0.30
53 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGATGC
Found at i:2049581 original size:101 final size:102
Alignment explanation
Indices: 2049437--2049686 Score: 321
Period size: 101 Copynumber: 2.5 Consensus size: 102
2049427 AGCGACATTA
* * ** * **
2049437 GACTTGAAGA-AAA-ATGCCAATGTGCTAAGACAAGGCCAGCGACATTGGGTTT--AGGAATGTT
1 GACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTGAAAG-ATGAC
*
2049498 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATCG
65 AAAGATGCCAATATACTGATTCAAGGCCAACGATATCG
* *
2049536 GACTTAAAGATAAAGATGCTAATGTGCTGATTTAAGGCCAGCGACATT-GGTTTGAAAGATGACA
1 GACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTGAAAGATGACA
* *
2049600 AAGGTGCCAATATACTGATTCAAGGCCAACGATATTG
66 AAGATGCCAATATACTGATTCAAGGCCAACGATATCG
* * *
2049637 GACTTAAAGATGAAGGTGCCAATGTGCTGATTCAACGCCAGCGACATTGG
1 GACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
2049687 ACTTAAAGGT
Statistics
Matches: 129, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 9 0.07
100 8 0.06
101 109 0.84
102 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (102 bp):
GACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTGAAAGATGACA
AAGATGCCAATATACTGATTCAAGGCCAACGATATCG
Found at i:2049697 original size:43 final size:43
Alignment explanation
Indices: 2049599--2049734 Score: 173
Period size: 43 Copynumber: 3.0 Consensus size: 43
2049589 GAAAGATGAC
* *
2049599 AAAGGTGCCAATATACTGATTCAAGGCCAACGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
2049642 AAAGATGAAGGTGCCAATGTGCTGATTCAACGCCAGCGACATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
2049691 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
2049734 A
1 A
2049735 GAAGAAGATG
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
43 40 0.51
45 1 0.01
47 1 0.01
49 37 0.47
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:2049814 original size:28 final size:29
Alignment explanation
Indices: 2049756--2049915 Score: 175
Period size: 28 Copynumber: 5.6 Consensus size: 29
2049746 CACCAACTTG
* **
2049756 TGTGGGCTTTTGAAAGGGTT-ACACCAACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTGACT
*
2049785 TGTGGGCTTTTG-AAGGTTGCCACTTACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* * *
2049813 TGTGGGCTTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
*
2049842 TGTGGGCTTTAGAAAAGAG-TGCCACTGACT
1 TGTGGGCTTTTG-AAAG-GTTGCCACTGACT
*
2049872 TGTGGGTTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
*
2049900 TGTGGGCTTTGGAAAG
1 TGTGGGCTTTTGAAAG
2049916 ATGAGGAATG
Statistics
Matches: 112, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
27 5 0.04
28 43 0.38
29 39 0.35
30 24 0.21
31 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.33
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTGACT
Found at i:2051362 original size:1 final size:1
Alignment explanation
Indices: 2051358--2051460 Score: 62
Period size: 1 Copynumber: 103.0 Consensus size: 1
2051348 TTTGTTGTTG
* * * * * * * * * *
2051358 TTTTTTTGTTTGTTTGTTTGTTTTTTTTTGTTTTTTTTTTCTCTTCTTTTTTTTTTTGTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
2051423 TGTTTGTTTGTTTTTTTTTGTTTTTTGTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2051461 GTGGATGACG
Statistics
Matches: 70, Mismatches: 32, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.84
Consensus pattern (1 bp):
T
Found at i:2051371 original size:4 final size:4
Alignment explanation
Indices: 2051355--2051450 Score: 78
Period size: 4 Copynumber: 25.0 Consensus size: 4
2051345 CTTTTTGTTG
* * *
2051355 TTGT TTTT TTGT TTGT TTGT TTGT TT-T TT-T TTGT TT-T TTTT TTCT
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT
* * *
2051400 CTTCT TTTT TTTT TTGTT TTGT TTGT TTGT TTGT TT-T TT-T TTGT TT-T
1 -TTGT TTGT TTGT TTG-T TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT
2051447 TTGT
1 TTGT
2051451 CTTTTTTTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
3 18 0.22
4 55 0.68
5 8 0.10
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (4 bp):
TTGT
Found at i:2051437 original size:51 final size:49
Alignment explanation
Indices: 2051358--2051460 Score: 154
Period size: 51 Copynumber: 2.1 Consensus size: 49
2051348 TTTGTTGTTG
*
2051358 TTTTTTTGTTTGTTTGTTTGTTT-TTTTTTGTTTTTTTTTTCTCTTCTTTT
1 TTTTTTTGTTTGTTTGTTTGTTTGTTTTTT-TTTGTTTTTTCTCTT-TTTT
*
2051408 TTTTTTTGTTTTGTTTGTTTGTTTGTTTTTTTTTGTTTTTTGTCTTTTTT
1 TTTTTTTG-TTTGTTTGTTTGTTTGTTTTTTTTTGTTTTTTCTCTTTTTT
2051458 TTT
1 TTT
2051461 GTGGATGACG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
50 15 0.31
51 28 0.57
52 6 0.12
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.84
Consensus pattern (49 bp):
TTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTTTGTTTTTTCTCTTTTTT
Found at i:2055766 original size:15 final size:15
Alignment explanation
Indices: 2055748--2055778 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2055738 CGAGTCAACT
2055748 TCATCATTATCATCA
1 TCATCATTATCATCA
*
2055763 TCATCATTATCTTCA
1 TCATCATTATCATCA
2055778 T
1 T
2055779 TATCTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (15 bp):
TCATCATTATCATCA
Found at i:2057414 original size:33 final size:33
Alignment explanation
Indices: 2057358--2057422 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
2057348 TTTGGGACAA
** *
2057358 TGTATCGATACAATTCGTTATGTATTGATACAT
1 TGTATCGATACAATTCGCCATGTATCGATACAT
2057391 TGTATCGATACAATGT-GCCATGTATCGATACA
1 TGTATCGATACAAT-TCGCCATGTATCGATACA
2057423 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATTCGCCATGTATCGATACAT
Found at i:2062580 original size:80 final size:79
Alignment explanation
Indices: 2062433--2062647 Score: 215
Period size: 80 Copynumber: 2.7 Consensus size: 79
2062423 AATAGAATTT
* * * *
2062433 TAGT-GTAAAAATGAGGTT-AGAGTATCC-CTACAGAGATGGTGGGGTTGGAATATACACGGAGG
1 TAGTAGTAAAAATGAGGTTGA-AGTATCCTCT-CAGAAATAGTGGGGTTGGAATAT-CCCAGAGG
* *
2062495 CGAAAAATTTAGTGTTT
63 CGAAAAATTCAGTGTTG
* * *
2062512 TAG-AGGTAAAAATGGGGTTGAAGTATCCTCTCAGAAATAGTGGGGTTAGAATATCCCTAGAGGT
1 TAGTA-GTAAAAATGAGGTTGAAGTATCCTCTCAGAAATAGTGGGGTTGGAATATCCC-AGAGGC
2062576 GAAAAATTCAGTGTTG
64 GAAAAATTCAGTGTTG
* * * * *
2062592 TGGTAGTAGAAATGAAGTTGAAGTATCCTTTC-GAAGATAGTGGGGTTGGAGTATCC
1 TAGTAGTAAAAATGAGGTTGAAGTATCCTCTCAGAA-ATAGTGGGGTTGGAATATCC
2062648 TCAAAGATTA
Statistics
Matches: 113, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
79 8 0.07
80 101 0.89
81 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (79 bp):
TAGTAGTAAAAATGAGGTTGAAGTATCCTCTCAGAAATAGTGGGGTTGGAATATCCCAGAGGCGA
AAAATTCAGTGTTG
Found at i:2062685 original size:80 final size:80
Alignment explanation
Indices: 2062517--2062685 Score: 180
Period size: 80 Copynumber: 2.1 Consensus size: 80
2062507 TGTTTTAGAG
** * *
2062517 GTAAAAATGGGGTTGAAGTATCCTCTCAGAAATAGTGGGGTTAGAATATCCCTAGAGGTGAAAAA
1 GTAAAAATGAAGTTGAAGTATCCTCTCAGAAATAGTGGGGTTAGAATATCCCTAAAGATGAAAAA
*** *
2062582 TTCAGTGTTGTGGTA
66 TTCAAAATTGTGGAA
* * * * *
2062597 GTAGAAATGAAGTTGAAGTATCCTTTC-GAAGATAGTGGGGTTGGAGTAT-CCTCAAAGATTAAA
1 GTAAAAATGAAGTTGAAGTATCCTCTCAGAA-ATAGTGGGGTTAGAATATCCCT-AAAGATGAAA
*
2062660 AATTCAAAATTTTGGAA
64 AATTCAAAATTGTGGAA
2062677 GTAAAAATG
1 GTAAAAATG
2062686 GTGTTGGAGT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
79 6 0.08
80 66 0.92
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (80 bp):
GTAAAAATGAAGTTGAAGTATCCTCTCAGAAATAGTGGGGTTAGAATATCCCTAAAGATGAAAAA
TTCAAAATTGTGGAA
Found at i:2065233 original size:72 final size:70
Alignment explanation
Indices: 2065142--2065284 Score: 187
Period size: 70 Copynumber: 2.0 Consensus size: 70
2065132 GATACAGTAC
* * * * **
2065142 AGTTACTTGAGTATGGATACATGCTGTCCAAAAAAATTGAATTTTAGCTACTACCAAGGCTTGTA
1 AGTTACTTAACTATCGATACATACTGTCC--AAAAATCAAATTTTAGCTACTACCAAGGCTTGTA
2065207 TCGATAT
64 TCGATAT
* * *
2065214 AGTTACTTAACTATCGATACTTATTGTCCAAAAATCAAATTTTAGCTACTGCCAAGGCTTGTATC
1 AGTTACTTAACTATCGATACATACTGTCCAAAAATCAAATTTTAGCTACTACCAAGGCTTGTATC
2065279 GATAT
66 GATAT
2065284 A
1 A
2065285 ATGACACTAG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
70 39 0.63
72 23 0.37
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (70 bp):
AGTTACTTAACTATCGATACATACTGTCCAAAAATCAAATTTTAGCTACTACCAAGGCTTGTATC
GATAT
Found at i:2065840 original size:31 final size:31
Alignment explanation
Indices: 2065807--2066345 Score: 300
Period size: 31 Copynumber: 17.8 Consensus size: 31
2065797 AGATGTCCTA
* *
2065807 CTCTTTAAGGACAAAGAAAGAAAACATCTTA
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* **
2065838 CTCTTTGAGGATAAA-AGAAGAAAATGTCTTG
1 CTCTTTGAGGACAAAGA-AAGAAAACATCTTG
* *
2065869 TTTTTTGAGGACAAAGAAAGAAAACATCTTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * ** *
2065900 TTCTTTGAGGATAAA-AGAAGAAAATGTCTTA
1 CTCTTTGAGGACAAAGA-AAGAAAACATCTTG
*
2065931 CTCTTTGAGGACAAAGAAAGAAAACATCCTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * * ** *
2065962 TTCTTT---GA-AGATAAAGAAAATGTCTTA
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * * *
2065989 CTTTTTGAGGATAAAGAAAGGAAATATCTTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * *** * *
2066020 CT-TCTTGAGGGC-AA-ACAG--AGTGTCCTA
1 CTCT-TTGAGGACAAAGAAAGAAAACATCTTG
*
2066047 CTTTTTGAGGAC----AAAGAAAACATCTTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * *
2066074 CTCTTTGAGGACAAAGAAAAAAAACAGCCTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
** *
2066105 CTCTTTGAGGAC-AAGGGAGAAAAGTATCTTG
1 CTCTTTGAGGACAAAGAAAGAAAA-CATCTTG
* * ** * *
2066136 CTCTTTGAGGATAAAGGAAGAAAATGTCCTA
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * *
2066167 CTCTTTGATGACAAAGAAAGAAAACGTCATG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* *
2066198 CTCTTTGAGGACAATGAAAGAAAACATCCTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * * * * * * *
2066229 TTCTTTGAGGATAAGGGAGGTAAACGTCATG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * * * * * *
2066260 CTTTTTGAGGATAAAGGAGGAAAGCGTCCTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * * *
2066291 CTCTTTGAGGATAAAGGAGGAAAATATCTTG
1 CTCTTTGAGGACAAAGAAAGAAAACATCTTG
* * *
2066322 TTCTTTGAGGAAAAAAAAAGAAAA
1 CTCTTTGAGGACAAAGAAAGAAAA
2066346 TTTGCTGCTA
Statistics
Matches: 392, Mismatches: 98, Indels: 36
0.75 0.19 0.07
Matches are distributed among these distances:
25 3 0.01
27 46 0.12
28 3 0.01
29 3 0.01
30 15 0.04
31 310 0.79
32 12 0.03
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (31 bp):
CTCTTTGAGGACAAAGAAAGAAAACATCTTG
Found at i:2065885 original size:62 final size:62
Alignment explanation
Indices: 2065799--2066346 Score: 412
Period size: 62 Copynumber: 9.0 Consensus size: 62
2065789 AAAGGAAAAG
* *
2065799 ATGTCCTACTCTTTAAGGACAAAGAAAGAAAACATCTTACTCTTTGAGGATAAAAGAAGAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAGAAGAAA
* ** * *
2065861 ATGTCTTGTTTTTTGAGGACAAAGAAAGAAAACATCTTGTTCTTTGAGGATAAAAGAAGAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAGAAGAAA
* * * *
2065923 ATGTCTTACTCTTTGAGGACAAAGAAAGAAAACATCCTGTTCTTTGAAGAT---A-AAGAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAGAAGAAA
* * * * * **
2065981 ATGTCTTACTTTTTGAGGATAAAGAAAGGAAATATCTTGCT-TCTTGAGGGCAAACAG-AG---
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCT-TTGAGGATAAA-AGAAGAAA
* * *
2066040 -TGTCCTACTTTTTGAGGAC----AAAGAAAACATCTTGCTCTTTGAGGA-CAAAGAAAAAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAG-AAGAAA
* * ** * *
2066097 ACAG-CCTGCTCTTTGAGGAC-AAGGGAGAAAAGTATCTTGCTCTTTGAGGATAAAGGAAGAAA
1 A-TGTCCTACTCTTTGAGGACAAAGAAAGAAAA-CATCTTGCTCTTTGAGGATAAAAGAAGAAA
* * * * *
2066159 ATGTCCTACTCTTTGATGACAAAGAAAGAAAACGTCATGCTCTTTGAGGA-CAATGAAAGAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAG-AAGAAA
** ** * * * * * * * * * *
2066221 ACATCCTGTTCTTTGAGGATAAGGGAGGTAAACGTCATGCTTTTTGAGGATAAAGGAGGAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAGAAGAAA
** * * * * * * * *
2066283 GCGTCCTGCTCTTTGAGGATAAAGGAGGAAAATATCTTGTTCTTTGAGGAAAAAAAAAGAAA
1 ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAGAAGAAA
2066345 AT
1 AT
2066347 TTGCTGCTAT
Statistics
Matches: 386, Mismatches: 77, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
52 2 0.01
53 2 0.01
54 22 0.06
55 1 0.00
57 1 0.00
58 77 0.20
59 2 0.01
61 10 0.03
62 254 0.66
63 15 0.04
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.27
Consensus pattern (62 bp):
ATGTCCTACTCTTTGAGGACAAAGAAAGAAAACATCTTGCTCTTTGAGGATAAAAGAAGAAA
Found at i:2065947 original size:27 final size:27
Alignment explanation
Indices: 2065917--2066093 Score: 86
Period size: 27 Copynumber: 6.3 Consensus size: 27
2065907 AGGATAAAAG
*
2065917 AAGAAAATGTCTTACTCTTTGAGGACAAAGA
1 AAGAAAATATCTTACTCTTTGAGGAC----A
* * ** * *
2065948 AAGAAAACATCCTGTTCTTTGAAGATA
1 AAGAAAATATCTTACTCTTTGAGGACA
* * *
2065975 AAGAAAATGTCTTACTTTTTGAGGATA
1 AAGAAAATATCTTACTCTTTGAGGACA
* *
2066002 AAGAAAGGAAATATCTTGCT-TCTTGAGGGCA
1 AAG--A--AAATATCTTACTCT-TTGAGGACA
* * * * * *
2066033 AACAGAGTGTCCTACTTTTTGAGGACA
1 AAGAAAATATCTTACTCTTTGAGGACA
* *
2066060 AAGAAAACATCTTGCTCTTTGAGGACA
1 AAGAAAATATCTTACTCTTTGAGGACA
2066087 AAGAAAA
1 AAGAAAA
2066094 AAAACAGCCT
Statistics
Matches: 107, Mismatches: 33, Indels: 16
0.69 0.21 0.10
Matches are distributed among these distances:
27 65 0.61
28 1 0.01
29 2 0.02
30 1 0.01
31 38 0.36
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.28
Consensus pattern (27 bp):
AAGAAAATATCTTACTCTTTGAGGACA
Found at i:2066390 original size:27 final size:27
Alignment explanation
Indices: 2066360--2066475 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 27
2066350 CTGCTATTTA
*
2066360 AAGATAAAGGAAATGTCCTACTCTTTG
1 AAGATAAAGAAAATGTCCTACTCTTTG
* ** * *
2066387 AAGACAAAGAAAATGTCCTGTTTTTTT
1 AAGATAAAGAAAATGTCCTACTCTTTG
* * * *
2066414 AGGATAAAGAAAATGTCATGCTTTTTG
1 AAGATAAAGAAAATGTCCTACTCTTTG
* * *
2066441 AGGATTAGGAAAATGTCCTACTCTTT-
1 AAGATAAAGAAAATGTCCTACTCTTTG
2066467 AAGGATAAA
1 AA-GATAAA
2066476 AGAAGAAAAC
Statistics
Matches: 69, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
26 1 0.01
27 68 0.99
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (27 bp):
AAGATAAAGAAAATGTCCTACTCTTTG
Found at i:2066540 original size:31 final size:30
Alignment explanation
Indices: 2066449--2066541 Score: 91
Period size: 31 Copynumber: 3.0 Consensus size: 30
2066439 TGAGGATTAG
*
2066449 GAAAATGTCCTACTCTTTAAGGATAAAAGAA
1 GAAAATGTCCTACTCTTTAAGAATAAAA-AA
** *
2066480 GAAAACATCCTGCT-TATTGAAGACA-AAAAAA
1 GAAAATGTCCTACTCT-TT-AAGA-ATAAAAAA
2066511 GAAAATGTCCTACTCTTTAAGAATTAAAAAA
1 GAAAATGTCCTACTCTTTAAGAA-TAAAAAA
2066542 AGATGCCCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
29 1 0.02
30 5 0.10
31 34 0.69
32 8 0.16
33 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.13, T:0.25
Consensus pattern (30 bp):
GAAAATGTCCTACTCTTTAAGAATAAAAAA
Found at i:2069064 original size:27 final size:27
Alignment explanation
Indices: 2069009--2069064 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
2068999 AATTACAGTT
* * *
2069009 GAAAGGTAGGGTTGGAATATCCCCTTG
1 GAAAGATAGGGTTGGAACATCCCCATG
* *
2069036 GAAAGATAGGGTTGGAGCATCCTCATG
1 GAAAGATAGGGTTGGAACATCCCCATG
2069063 GA
1 GA
2069065 TGACAAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (27 bp):
GAAAGATAGGGTTGGAACATCCCCATG
Found at i:2073250 original size:20 final size:21
Alignment explanation
Indices: 2073219--2073257 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
2073209 AGGTTAAAGC
2073219 CCTAGAAAGTATCGATACAAG
1 CCTAGAAAGTATCGATACAAG
2073240 CCTAG-AAGTATCGATACA
1 CCTAGAAAGTATCGATACA
2073258 TATTGCTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (21 bp):
CCTAGAAAGTATCGATACAAG
Found at i:2073328 original size:20 final size:20
Alignment explanation
Indices: 2073299--2073349 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
2073289 CATGATCTTA
*
2073299 GTATCGATACACAGCGAATT
1 GTATCGATACACAACGAATT
*
2073319 GTATCAATACACAACGAATT
1 GTATCGATACACAACGAATT
2073339 GTATCGATACA
1 GTATCGATACA
2073350 TAAAACTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (20 bp):
GTATCGATACACAACGAATT
Found at i:2074884 original size:15 final size:16
Alignment explanation
Indices: 2074850--2074891 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
2074840 GAATAAATCA
2074850 AAAATTGTTGAAAATG
1 AAAATTGTTGAAAATG
*
2074866 -AAATTCTTGAAAA-G
1 AAAATTGTTGAAAATG
2074880 AAAATTGTTGAA
1 AAAATTGTTGAA
2074892 CTAGAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.50, C:0.02, G:0.17, T:0.31
Consensus pattern (16 bp):
AAAATTGTTGAAAATG
Found at i:2076434 original size:42 final size:42
Alignment explanation
Indices: 2076387--2076490 Score: 208
Period size: 42 Copynumber: 2.5 Consensus size: 42
2076377 GTGTTTGTGA
2076387 AAGAATTGCCTCTAAGTAGGTCCATAAAGAAATTATACAAAC
1 AAGAATTGCCTCTAAGTAGGTCCATAAAGAAATTATACAAAC
2076429 AAGAATTGCCTCTAAGTAGGTCCATAAAGAAATTATACAAAC
1 AAGAATTGCCTCTAAGTAGGTCCATAAAGAAATTATACAAAC
2076471 AAGAATTGCCTCTAAGTAGG
1 AAGAATTGCCTCTAAGTAGG
2076491 CTGGTGTTTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (42 bp):
AAGAATTGCCTCTAAGTAGGTCCATAAAGAAATTATACAAAC
Found at i:2083446 original size:27 final size:27
Alignment explanation
Indices: 2083408--2083476 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
2083398 ACATAGCGAC
*
2083408 ATGTATCGATACATCTGGAAAACCCAG
1 ATGTATCGATACAACTGGAAAACCCAG
*
2083435 ATGTATCGATACAACTGGAAAACTCAG
1 ATGTATCGATACAACTGGAAAACCCAG
2083462 ATGTATCGATACAAC
1 ATGTATCGATACAAC
2083477 ATTCCTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
ATGTATCGATACAACTGGAAAACCCAG
Found at i:2085411 original size:36 final size:36
Alignment explanation
Indices: 2085366--2085440 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
2085356 AAGGGGGAGA
* *
2085366 AGATAATCGTTTAAGGGGGAGAATGTTTTTTAGAGG
1 AGATAATCGTTTAAGGGGGAGAATATTTTTAAGAGG
*
2085402 AGATAATCGTTTAAGGGGGAGAATATTTTTAAGGGG
1 AGATAATCGTTTAAGGGGGAGAATATTTTTAAGAGG
2085438 AGA
1 AGA
2085441 AAAACGACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.31
Consensus pattern (36 bp):
AGATAATCGTTTAAGGGGGAGAATATTTTTAAGAGG
Found at i:2085439 original size:17 final size:18
Alignment explanation
Indices: 2085375--2085441 Score: 59
Period size: 17 Copynumber: 3.8 Consensus size: 18
2085365 AAGATAATCG
*
2085375 TTTAAGGGGGAGAATGTT
1 TTTAAGGGGGAGAATATT
* * *
2085393 TTTTA-GAGGAG-ATAATCG
1 TTTAAGGGGGAGAAT-AT-T
2085411 TTTAAGGGGGAGAATATT
1 TTTAAGGGGGAGAATATT
2085429 TTTAA-GGGGAGAA
1 TTTAAGGGGGAGAA
2085442 AAACGACGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
16 2 0.05
17 14 0.37
18 13 0.34
19 7 0.18
20 2 0.05
ACGTcount: A:0.33, C:0.01, G:0.34, T:0.31
Consensus pattern (18 bp):
TTTAAGGGGGAGAATATT
Found at i:2086003 original size:13 final size:13
Alignment explanation
Indices: 2085985--2086009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2085975 CATTCTACTT
2085985 TGTATCGATACAA
1 TGTATCGATACAA
2085998 TGTATCGATACA
1 TGTATCGATACA
2086010 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2086006 original size:33 final size:32
Alignment explanation
Indices: 2085964--2086028 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
2085954 ACACACCCAG
*
2085964 ATGTATCGATACAT-TCTACTTTGTATCGATACA
1 ATGTATCGATACATGT-T-CATTGTATCGATACA
2085997 ATGTATCGATACATGTTCATTGTATCGATACA
1 ATGTATCGATACATGTTCATTGTATCGATACA
2086029 TGGCCAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (32 bp):
ATGTATCGATACATGTTCATTGTATCGATACA
Found at i:2086022 original size:19 final size:20
Alignment explanation
Indices: 2085998--2086051 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
2085988 ATCGATACAA
**
2085998 TGTATCGATACATGTTC-AT
1 TGTATCGATACATGGCCAAT
2086017 TGTATCGATACATGGCCAAAT
1 TGTATCGATACATGGCC-AAT
2086038 TGTATCGATACATG
1 TGTATCGATACATG
2086052 AAACTAGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATGGCCAAT
Found at i:2089328 original size:33 final size:33
Alignment explanation
Indices: 2089291--2089357 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
2089281 AGTAGCTTAA
2089291 ATTGTATCGATACAACAAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
2089324 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
2089357 A
1 A
2089358 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:2089331 original size:13 final size:13
Alignment explanation
Indices: 2089313--2089337 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2089303 CAACAAAATA
2089313 TGTATCGATACAT
1 TGTATCGATACAT
2089326 TGTATCGATACA
1 TGTATCGATACA
2089338 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2089643 original size:13 final size:13
Alignment explanation
Indices: 2089622--2089652 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2089612 CTACACATGG
*
2089622 TACAATGTATCGA
1 TACATTGTATCGA
2089635 TACATTGTATCGA
1 TACATTGTATCGA
2089648 TACAT
1 TACAT
2089653 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:2090501 original size:20 final size:19
Alignment explanation
Indices: 2090475--2090547 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
2090465 CTGCCAATTT
*
2090475 CATGTATCGATACAATTG-T
1 CATGTATCGATACAA-TGAG
2090494 CTATGTATCGATACAATGAG
1 C-ATGTATCGATACAATGAG
*
2090514 CATGTATCGATACATATGGG
1 CATGTATCGATACA-ATGAG
**
2090534 TGTGTATCGATACA
1 CATGTATCGATACA
2090548 TTCAAGGGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
19 16 0.34
20 31 0.66
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:2091086 original size:23 final size:23
Alignment explanation
Indices: 2091060--2091103 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
2091050 GGCTCTCGTT
2091060 AAAAAATTT-T-CCCTTTGATAA
1 AAAAAATTTCTCCCCTTTGATAA
2091081 AAAAAATTTCTCCCCTTTGATAA
1 AAAAAATTTCTCCCCTTTGATAA
2091104 TCGATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.43
22 1 0.05
23 11 0.52
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (23 bp):
AAAAAATTTCTCCCCTTTGATAA
Found at i:2091518 original size:28 final size:28
Alignment explanation
Indices: 2091487--2091553 Score: 134
Period size: 28 Copynumber: 2.4 Consensus size: 28
2091477 TTGCGAGAGT
2091487 AAAGTGAAGTGCTCACTCATGAGTTGTG
1 AAAGTGAAGTGCTCACTCATGAGTTGTG
2091515 AAAGTGAAGTGCTCACTCATGAGTTGTG
1 AAAGTGAAGTGCTCACTCATGAGTTGTG
2091543 AAAGTGAAGTG
1 AAAGTGAAGTG
2091554 ATCAACTCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (28 bp):
AAAGTGAAGTGCTCACTCATGAGTTGTG
Found at i:2092909 original size:22 final size:21
Alignment explanation
Indices: 2092874--2092923 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
2092864 TTTGTTGATG
*
2092874 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
2092894 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
2092915 AATTTGAAG
1 ATTTTGAAG
2092924 AAGATTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:2092920 original size:21 final size:22
Alignment explanation
Indices: 2092881--2092923 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
2092871 ATGATTTTGA
* *
2092881 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
2092903 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
2092924 AAGATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:2093115 original size:20 final size:21
Alignment explanation
Indices: 2093085--2093123 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
2093075 ATTTGGGTTT
2093085 TTCAGATGTATCGATACATCC
1 TTCAGATGTATCGATACATCC
2093106 TTCA-ATGTATCGATACAT
1 TTCAGATGTATCGATACAT
2093124 TCTAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (21 bp):
TTCAGATGTATCGATACATCC
Found at i:2103606 original size:18 final size:18
Alignment explanation
Indices: 2103583--2103617 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2103573 AGGGGGAGAG
2103583 ATTTTT-TTAAAAGGGAAA
1 ATTTTTATT-AAAGGGAAA
2103601 ATTTTTATTAAAGGGAA
1 ATTTTTATTAAAGGGAA
2103618 GAAAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (18 bp):
ATTTTTATTAAAGGGAAA
Found at i:2103623 original size:21 final size:22
Alignment explanation
Indices: 2103597--2103649 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
2103587 TTTTAAAAGG
*
2103597 GAAAATTTTT-ATTAAAGGGAA
1 GAAAATTTTTAATTAAAGAGAA
2103618 GAAAATTTTTAATTAAAGAGAA
1 GAAAATTTTTAATTAAAGAGAA
*
2103640 GTTAAATTTT
1 G-AAAATTTT
2103650 GAGAAATCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 10 0.36
22 11 0.39
23 7 0.25
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (22 bp):
GAAAATTTTTAATTAAAGAGAA
Found at i:2104247 original size:20 final size:21
Alignment explanation
Indices: 2104216--2104254 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
2104206 AGGTCAAAAC
2104216 CCTAGAAAGTATCGATACAAG
1 CCTAGAAAGTATCGATACAAG
2104237 CCTAG-AAGTATCGATACA
1 CCTAGAAAGTATCGATACA
2104255 TATTGCTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (21 bp):
CCTAGAAAGTATCGATACAAG
Found at i:2104418 original size:14 final size:14
Alignment explanation
Indices: 2104399--2104425 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2104389 ATAGTGAAAA
2104399 GTATCGATACATAT
1 GTATCGATACATAT
2104413 GTATCGATACATA
1 GTATCGATACATA
2104426 ATAACTGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (14 bp):
GTATCGATACATAT
Found at i:2105398 original size:25 final size:25
Alignment explanation
Indices: 2105364--2105431 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 25
2105354 TGTATCGATA
2105364 CAATGAACATTGTATGGATACATAT
1 CAATGAACATTGTATGGATACATAT
2105389 CAATGAACATTGTATGGATAC--AT
1 CAATGAACATTGTATGGATACATAT
2105412 ---TGAACATTGTATGGATACAT
1 CAATGAACATTGTATGGATACAT
2105432 TTCCTCAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
20 18 0.44
23 2 0.05
25 21 0.51
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (25 bp):
CAATGAACATTGTATGGATACATAT
Found at i:2105431 original size:20 final size:20
Alignment explanation
Indices: 2105354--2105432 Score: 95
Period size: 20 Copynumber: 3.7 Consensus size: 20
2105344 AACCCCAAAA
* *
2105354 TGTATCGATACAATGAACAT
1 TGTATGGATACATTGAACAT
2105374 TGTATGGATACATATCAATGAACAT
1 TGTATGGATAC--AT---TGAACAT
2105399 TGTATGGATACATTGAACAT
1 TGTATGGATACATTGAACAT
2105419 TGTATGGATACATT
1 TGTATGGATACATT
2105433 TCCTCAATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
20 31 0.60
22 1 0.02
23 2 0.04
25 18 0.35
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
TGTATGGATACATTGAACAT
Found at i:2109553 original size:20 final size:20
Alignment explanation
Indices: 2109513--2109553 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2109503 TTGACCCAAA
* **
2109513 TGTATCGATACATTCTTCAT
1 TGTATCGATACATACCACAT
2109533 TGTATCGATACATACCACAT
1 TGTATCGATACATACCACAT
2109553 T
1 T
2109554 CAATGCCCGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATACCACAT
Found at i:2121200 original size:52 final size:52
Alignment explanation
Indices: 2121122--2121250 Score: 195
Period size: 52 Copynumber: 2.5 Consensus size: 52
2121112 CGAAATATGA
*
2121122 AAATTCGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
2121174 AAATTTGCTTGCATGTATTGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
2121226 AAATTTTCCTACGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2121251 AAGTTCAGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:2121261 original size:52 final size:52
Alignment explanation
Indices: 2121122--2121270 Score: 158
Period size: 52 Copynumber: 2.9 Consensus size: 52
2121112 CGAAATATGA
* * * *
2121122 AAATTCGCCTGCATGTATCGATAC-ATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACAAGTT-ACAGTGTATCGATACATCTGGGC
* * * ** *
2121174 AAATTTGCTTGCATGTATTGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACAAGTTACAGTGTATCGATACATCTGGGC
* *
2121226 AAATTTTCCTACGTGTATCGATACAAAGTT-CAGTGTATCGATACA
1 AAATTTGCCTACATGTATCGATAC-AAGTTACAGTGTATCGATACA
2121271 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 77 0.93
53 6 0.07
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTACATGTATCGATACAAGTTACAGTGTATCGATACATCTGGGC
Found at i:2121277 original size:13 final size:13
Alignment explanation
Indices: 2121259--2121283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2121249 CAAAGTTCAG
2121259 TGTATCGATACAA
1 TGTATCGATACAA
2121272 TGTATCGATACA
1 TGTATCGATACA
2121284 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2121363 original size:13 final size:13
Alignment explanation
Indices: 2121345--2121369 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2121335 ACAAAACTTA
2121345 TGTATCGATACAT
1 TGTATCGATACAT
2121358 TGTATCGATACA
1 TGTATCGATACA
2121370 ACACCTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2121365 original size:32 final size:33
Alignment explanation
Indices: 2121324--2121389 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
2121314 AGTAGCTTAA
2121324 ATTGTATCGATACAA-AACTTATGTATCGATAC
1 ATTGTATCGATACAACAACTTATGTATCGATAC
*
2121356 ATTGTATCGATACAACACCTTATGTATCGATAC
1 ATTGTATCGATACAACAACTTATGTATCGATAC
2121389 A
1 A
2121390 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 15 0.47
33 17 0.53
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAACAACTTATGTATCGATAC
Found at i:2121468 original size:21 final size:21
Alignment explanation
Indices: 2121427--2121468 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2121417 GTTGGGACCT
*
2121427 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
2121448 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
2121469 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:2122291 original size:67 final size:68
Alignment explanation
Indices: 2122169--2122295 Score: 193
Period size: 67 Copynumber: 1.9 Consensus size: 68
2122159 ATTGGGTTTT
* *
2122169 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
2122234 AGA
66 AGA
* * * *
2122237 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
2122296 GAAAAAGGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
67 49 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:2122361 original size:43 final size:43
Alignment explanation
Indices: 2122299--2122802 Score: 639
Period size: 43 Copynumber: 11.1 Consensus size: 43
2122289 AAGATGAGAA
*
2122299 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2122343 AAAGGTGCCAATGTGCTGATTCAAAGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
2122386 AAAGATGCCAATGCGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2122429 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
2122478 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
2122521 AAAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2122564 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2122613 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2122656 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2122705 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
2122748 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
2122797 AGAAGG
1 A-AAGG
2122803 GTTGCCACCG
Statistics
Matches: 410, Mismatches: 26, Indels: 48
0.85 0.05 0.10
Matches are distributed among these distances:
43 237 0.58
44 14 0.03
48 4 0.01
49 155 0.38
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:2122474 original size:92 final size:86
Alignment explanation
Indices: 2122303--2122802 Score: 649
Period size: 92 Copynumber: 5.5 Consensus size: 86
2122293 TGAGAAAAAG
* *
2122303 GATGTCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
*
2122368 GCCAGCTATATTGGACTTAAA
66 GCCAGCTACATTGGACTTAAA
* * *
2122389 GATGCCAATGCGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGGTGCCAATGTGCTGA
*
2122454 TTCAAGGCCAGCTATATTGGACTTAAA
60 TTCAAGGCCAGCTACATTGGACTTAAA
*
2122481 GGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
1 GATGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
*
2122546 GCCAGTTACATTGGACTTAAAGAA
66 GCCAGCTACATTGGACTT--A-AA
*
2122570 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 G-A--TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
2122635 AAGGCCAGCTACATTGGACTTAAAGAA
63 AAGGCCAGCTACATTGGACTT--A-AA
*
2122662 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 G-A--TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
2122727 AAGGCCAGCTACATTGGACTTAAAGAA
63 AAGGCCAGCTACATTGGACTT--A-AA
* * *
2122754 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAGAAGG
1 G-A--TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGG
2122803 GTTGCCACCG
Statistics
Matches: 385, Mismatches: 16, Indels: 19
0.92 0.04 0.05
Matches are distributed among these distances:
86 76 0.20
87 1 0.00
88 1 0.00
89 3 0.01
91 1 0.00
92 299 0.78
93 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (86 bp):
GATGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
GCCAGCTACATTGGACTTAAA
Found at i:2122482 original size:22 final size:22
Alignment explanation
Indices: 2122457--2122525 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
2122447 ATGCTGATTC
2122457 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
* * *
2122479 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTATAT-TG--GACTTA
2122500 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
2122522 AAGG
1 AAGG
2122526 TGCCAATGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
AAGGCCAGCTATATTGGACTTA
Done.