Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4432388
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 63034 characters in sequence are not A, C, G, or T
File 27 of 27
Found at i:4352443 original size:53 final size:51
Alignment explanation
Indices: 4352359--4352485 Score: 154
Period size: 53 Copynumber: 2.5 Consensus size: 51
4352349 CCGAAAATAA
* *
4352359 CGGGGTTGGAGTAT-CCCCGATTATGAAAAATTGATGTTTT-AGAGATAAAAT
1 CGGGGTTGGAGTATCCCCCGATTA-GAAAAATTGATGTTTTGA-AAATAAAAC
*
4352410 CGGGGTTGGAGTATCCCCTCGATTA-AAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCC-CGATTAGAA--AAATTGATGTTTTGAAAATAAAAC
4352463 CGGGGTTGGAGTAT-CCCCGATTA
1 CGGGGTTGGAGTATCCCCCGATTA
4352486 TGGGCAATTG
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
51 22 0.32
52 6 0.09
53 39 0.57
54 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCCGATTAGAAAAATTGATGTTTTGAAAATAAAAC
Found at i:4352738 original size:143 final size:141
Alignment explanation
Indices: 4352457--4352739 Score: 521
Period size: 143 Copynumber: 2.0 Consensus size: 141
4352447 GTTTTGAAAA
4352457 TAAAACCGGGGTTGGAGTATCCCCGATTATGGGCAATTGAGAAGCTTAACAAAAATACTCTAGGG
1 TAAAACCGGGGTTGGAGTATCCCCGATTATGGGCAATTGAGAAGCTTAACAAAAATACTCTAGGG
*
4352522 TTTAGCCTTGGTCCGAGCCTAGGGGAATTACAAGGAGGCGTCCGAACGTCTCGGGATGAAGTTGG
66 TTTAGCCTTGGTCCGAGCCTAGGGGAATTACAAGGAGGCGTCCGAACGTCTCAGGATGAAGTTGG
4352587 GAAGAACGGCC
131 GAAGAACGGCC
*
4352598 TAAAGCCGGGGTTGGAGTATCCCCTCGATTATGGGCAATTGAGAAGCTTAACAAAAATACTCTAG
1 TAAAACCGGGGTTGGAGTAT-CCC-CGATTATGGGCAATTGAGAAGCTTAACAAAAATACTCTAG
*
4352663 GGTTTAGCCTTGGTCCGAGCCTAGGGGAATTACAAGGAGGCGTCCGAACGTCTTAGGATGAAGTT
64 GGTTTAGCCTTGGTCCGAGCCTAGGGGAATTACAAGGAGGCGTCCGAACGTCTCAGGATGAAGTT
4352728 GGGAAGAACGGC
129 GGGAAGAACGGC
4352740 TTAACTTTTG
Statistics
Matches: 137, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
141 19 0.14
142 3 0.02
143 115 0.84
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (141 bp):
TAAAACCGGGGTTGGAGTATCCCCGATTATGGGCAATTGAGAAGCTTAACAAAAATACTCTAGGG
TTTAGCCTTGGTCCGAGCCTAGGGGAATTACAAGGAGGCGTCCGAACGTCTCAGGATGAAGTTGG
GAAGAACGGCC
Found at i:4353910 original size:27 final size:27
Alignment explanation
Indices: 4353857--4354057 Score: 253
Period size: 27 Copynumber: 7.2 Consensus size: 27
4353847 TTCCATCATT
* *
4353857 CCATGCCTTCA-TCTCTTATTCCATGC
1 CCATGCCTTCATTTTTTTATTCCATGC
4353883 CCATGCCTTCATTTTTTTATTCCATGCCCATCATC
1 CCATGCCTTCATTTTTTTATTCCATG--------C
*
4353918 CCATGCCTTCAATTTTTTATTCCATGC
1 CCATGCCTTCATTTTTTTATTCCATGC
4353945 CCATGCCTTCATTTTTTTATTCCATGC
1 CCATGCCTTCATTTTTTTATTCCATGC
*
4353972 CCATGCCTTTATTTTTTTTATTCCATGC
1 CCATGCCTTCA-TTTTTTTATTCCATGC
*
4354000 CCATACCTTCA-TTTTTTATTCCATGC
1 CCATGCCTTCATTTTTTTATTCCATGC
*
4354026 CCATGCCTTTATTTTTTTATTCCATGC
1 CCATGCCTTCATTTTTTTATTCCATGC
4354053 CCATG
1 CCATG
4354058 ATCCCGTGTT
Statistics
Matches: 155, Mismatches: 9, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
26 35 0.23
27 69 0.45
28 25 0.16
35 26 0.17
ACGTcount: A:0.16, C:0.31, G:0.07, T:0.46
Consensus pattern (27 bp):
CCATGCCTTCATTTTTTTATTCCATGC
Found at i:4353921 original size:35 final size:35
Alignment explanation
Indices: 4353882--4353948 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
4353872 TTATTCCATG
*
4353882 CCCATGCCTTCATTTTTTTATTCCATGCCCATCAT
1 CCCATGCCTTCAATTTTTTATTCCATGCCCATCAT
4353917 CCCATGCCTTCAATTTTTTATTCCATGCCCAT
1 CCCATGCCTTCAATTTTTTATTCCATGCCCAT
4353949 GCCTTCATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.18, C:0.34, G:0.06, T:0.42
Consensus pattern (35 bp):
CCCATGCCTTCAATTTTTTATTCCATGCCCATCAT
Found at i:4353951 original size:62 final size:62
Alignment explanation
Indices: 4353849--4354029 Score: 229
Period size: 62 Copynumber: 3.1 Consensus size: 62
4353839 CTTCCTTTTT
* * *
4353849 CCATCATTCCATGCCTTC-ATCTCTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGC
1 CCATCATCCCATGCCTTCAATTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGC
4353910 CCATCATCCCATGCCTTCAATTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATG-
1 CCATCATCCCATGCCTTCAATTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGC
* * *
4353971 -------CCCATGCCTTTATTTTTTTTATTCCATGCCCATACCTTCA-TTTTTTATTCCATGC
1 CCATCATCCCATGCCTTCA-ATTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGC
4354026 CCAT
1 CCAT
4354030 GCCTTTATTT
Statistics
Matches: 107, Mismatches: 6, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
54 25 0.23
55 25 0.23
61 17 0.16
62 40 0.37
ACGTcount: A:0.17, C:0.32, G:0.06, T:0.45
Consensus pattern (62 bp):
CCATCATCCCATGCCTTCAATTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGC
Found at i:4354033 original size:81 final size:85
Alignment explanation
Indices: 4353857--4354057 Score: 279
Period size: 81 Copynumber: 2.4 Consensus size: 85
4353847 TTCCATCATT
* *
4353857 CCATGCCTTCA-TCTCTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGCCCATCATCCCA
1 CCATGCCTTCATTTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGCCCA-CAT--CA
4353921 TGCCTTCAATTTTTTATTCCATGC
63 -GCCTTCAATTTTTTATTCCATGC
*
4353945 CCATGCCTTCATTTTTTTATTCCATGCCCATGCCTTTATTTTTTTTATTCCATG-CC-CAT-A-C
1 CCATGCCTTCATTTTTTTATTCCATGCCCATGCCTTCA-TTTTTTTATTCCATGCCCACATCAGC
4354006 CTTC-ATTTTTTATTCCATGC
65 CTTCAATTTTTTATTCCATGC
*
4354026 CCATGCCTTTATTTTTTTATTCCATGCCCATG
1 CCATGCCTTCATTTTTTTATTCCATGCCCATG
4354058 ATCCCGTGTT
Statistics
Matches: 107, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
81 47 0.44
82 5 0.05
84 1 0.01
87 3 0.03
88 11 0.10
89 25 0.23
90 15 0.14
ACGTcount: A:0.16, C:0.31, G:0.07, T:0.46
Consensus pattern (85 bp):
CCATGCCTTCATTTTTTTATTCCATGCCCATGCCTTCATTTTTTTATTCCATGCCCACATCAGCC
TTCAATTTTTTATTCCATGC
Found at i:4356512 original size:2 final size:2
Alignment explanation
Indices: 4356507--4356542 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
4356497 AAAAGTTTAC
*
4356507 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4356543 TACGAAAGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4358976 original size:25 final size:22
Alignment explanation
Indices: 4358931--4358976 Score: 56
Period size: 25 Copynumber: 2.0 Consensus size: 22
4358921 ATTCTTGTGA
*
4358931 TTCTTCAAAATAGAAGATTTTT
1 TTCTTCAAAATAGAAAATTTTT
4358953 TTCTTACAAAATTAAGAAAATTTT
1 TTCTT-CAAAA-T-AGAAAATTTT
4358977 AATACATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 5 0.25
24 1 0.05
25 9 0.45
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (22 bp):
TTCTTCAAAATAGAAAATTTTT
Found at i:4361073 original size:14 final size:13
Alignment explanation
Indices: 4361048--4361080 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
4361038 GTAATATAAA
4361048 AAATTTAAAATTT
1 AAATTTAAAATTT
4361061 AAATTTCAAAATTT
1 AAATTT-AAAATTT
4361075 AAATTT
1 AAATTT
4361081 TTTATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (13 bp):
AAATTTAAAATTT
Found at i:4361087 original size:21 final size:21
Alignment explanation
Indices: 4361047--4361105 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
4361037 AGTAATATAA
* **
4361047 AAAATTTAAAATTTAAATTTC
1 AAAATTTAAATTTTTTATTTC
*
4361068 AAAATTTAAATTTTTTATTTT
1 AAAATTTAAATTTTTTATTTC
*
4361089 TAAA-TTATAATTTTTTA
1 AAAATTTA-AATTTTTTA
4361106 CCATAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
AAAATTTAAATTTTTTATTTC
Found at i:4365892 original size:2 final size:2
Alignment explanation
Indices: 4365887--4365927 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
4365877 GTTTGGTGTG
*
4365887 TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4365928 GGTCCACTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:4367020 original size:34 final size:34
Alignment explanation
Indices: 4366972--4367038 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
4366962 AGTTTAATTA
* * *
4366972 TTTATTTTATTATTTATAATATTA-AAATATTAAT
1 TTTATATTAATATTTACAATATTATAAA-ATTAAT
*
4367006 TTTATATTAATATTTACGATATTATAAAATTAA
1 TTTATATTAATATTTACAATATTATAAAATTAA
4367039 ATAAAAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 25 0.89
35 3 0.11
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (34 bp):
TTTATATTAATATTTACAATATTATAAAATTAAT
Found at i:4367058 original size:19 final size:19
Alignment explanation
Indices: 4367034--4367098 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
4367024 ATATTATAAA
4367034 ATTAAATAAAAATATTTTT
1 ATTAAATAAAAATATTTTT
* **
4367053 ATTAAA-AATAATAATTTAA
1 ATTAAATAAAAAT-ATTTTT
*
4367072 ATTAAATTATAAA-ATTTTT
1 ATTAAA-TAAAAATATTTTT
4367091 ATTTAAAT
1 A-TTAAAT
4367099 TAATTTAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
18 5 0.14
19 22 0.63
20 5 0.14
21 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTAAATAAAAATATTTTT
Found at i:4367089 original size:38 final size:40
Alignment explanation
Indices: 4367032--4367119 Score: 119
Period size: 38 Copynumber: 2.2 Consensus size: 40
4367022 CGATATTATA
4367032 AAATTAAA-TAAAAATATTTTTATTAAAAATAA-TAATTT
1 AAATTAAATTAAAAATATTTTTATTAAAAATAATTAATTT
* * *
4367070 AAATTAAATTATAAA-ATTTTTATTTAAATTAATTTAATTT
1 AAATTAAATTAAAAATATTTTTATTAAAAATAA-TTAATTT
4367110 AAATTAAATT
1 AAATTAAATT
4367120 TATTAAATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 23 0.52
39 5 0.11
40 16 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (40 bp):
AAATTAAATTAAAAATATTTTTATTAAAAATAATTAATTT
Found at i:4368800 original size:25 final size:23
Alignment explanation
Indices: 4368765--4368880 Score: 65
Period size: 22 Copynumber: 5.0 Consensus size: 23
4368755 GATAATGTCC
**
4368765 AATATTTAAATTTATCTATTTATAT
1 AATA-TTAAATTTAAATATTTA-AT
4368790 AAATATTAAATTTAAATATTTAAT
1 -AATATTAAATTTAAATATTTAAT
* * *
4368814 AATATT-TAGTTATATATTTAATT
1 AATATTAAATTTAAATATTTAA-T
* * ** * *
4368837 TATTTTATTTTTAAAAAATTAAT
1 AATATTAAATTTAAATATTTAAT
**
4368860 TTTA-TAAATTTAAATATTTAA
1 AATATTAAATTTAAATATTTAA
4368881 CGAATTTAAA
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
22 25 0.36
23 14 0.20
24 12 0.17
25 15 0.21
26 4 0.06
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (23 bp):
AATATTAAATTTAAATATTTAAT
Found at i:4368871 original size:60 final size:59
Alignment explanation
Indices: 4368766--4368879 Score: 135
Period size: 60 Copynumber: 1.9 Consensus size: 59
4368756 ATAATGTCCA
*
4368766 ATATTTAAATTTATCTATTTATATAAATATTAAATTTAAATATTTAATAATATTTAGTTAT
1 ATATTTAAATTTATCTATTTATATAAAAATTAAATTTAAATATTT-A-AATATTTAGTTAT
* * *
4368827 ATATTT-AATTTATTTTATTTTTA-AAAAATTAATTTTATAA-ATTTAAATATTTA
1 ATATTTAAATTTA-TCTATTTATATAAAAATTAAATTTA-AATATTTAAATATTTA
4368880 ACGAATTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
58 8 0.17
59 1 0.02
60 22 0.47
61 16 0.34
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (59 bp):
ATATTTAAATTTATCTATTTATATAAAAATTAAATTTAAATATTTAAATATTTAGTTAT
Found at i:4371500 original size:19 final size:18
Alignment explanation
Indices: 4371466--4371501 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
4371456 ATTAAAAATA
*
4371466 TAATTTTTTTGTTTTAAT
1 TAATTTTTTTATTTTAAT
4371484 TAATTTTTTTATCTTTAA
1 TAATTTTTTTAT-TTTAA
4371502 ACTTTTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (18 bp):
TAATTTTTTTATTTTAAT
Found at i:4371804 original size:17 final size:18
Alignment explanation
Indices: 4371770--4371804 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
4371760 AATTTTATAG
*
4371770 TAATTAAAGATAATTTTA
1 TAATTAAAAATAATTTTA
4371788 TAATTAAAAAT-ATTTTA
1 TAATTAAAAATAATTTTA
4371805 AGTAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
TAATTAAAAATAATTTTA
Found at i:4373223 original size:18 final size:17
Alignment explanation
Indices: 4373183--4373224 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
4373173 AAAATATTAA
4373183 ATTT-AAAAATAAATTT
1 ATTTAAAAAATAAATTT
**
4373199 AAGTAAAAAATTAAATTT
1 ATTTAAAAAA-TAAATTT
4373217 ATTTAAAA
1 ATTTAAAA
4373225 CATGAGTATG
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 2 0.10
17 5 0.25
18 13 0.65
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
ATTTAAAAAATAAATTT
Found at i:4373339 original size:24 final size:24
Alignment explanation
Indices: 4373277--4373351 Score: 75
Period size: 26 Copynumber: 3.1 Consensus size: 24
4373267 TCCCGATTTG
*
4373277 ATAT-ATTTTTAGTTATATAATAT
1 ATATAATTTTTATTTATATAATAT
*
4373300 ATATTAGTTTTATATTTATATACAT-T
1 ATA-TAATTTT-TATTTATATA-ATAT
*
4373326 ATATAATTTTTATTTA-ATAAAAT
1 ATATAATTTTTATTTATATAATAT
4373349 ATA
1 ATA
4373352 ATATTATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 1 0.02
23 10 0.23
24 7 0.16
25 10 0.23
26 13 0.30
27 2 0.05
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (24 bp):
ATATAATTTTTATTTATATAATAT
Found at i:4373822 original size:23 final size:23
Alignment explanation
Indices: 4373779--4373823 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
4373769 TTATTTTTAC
* *
4373779 AATATTATTATCAAATTTTACAT
1 AATATTATTAGCAAATGTTACAT
4373802 AATATTATT-GCATAATGTTACA
1 AATATTATTAGCA-AATGTTACA
4373824 AGATATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.44
Consensus pattern (23 bp):
AATATTATTAGCAAATGTTACAT
Found at i:4373937 original size:67 final size:68
Alignment explanation
Indices: 4373855--4373987 Score: 166
Period size: 67 Copynumber: 2.0 Consensus size: 68
4373845 ATATGTAATT
* * * *
4373855 ATATCAAACTTTACAA-TT-TACATAAAGTATTACCTTTAT-ATGTAATTATATAAAATATTATT
1 ATATCAAACATTACAAGTTATACA-AAACT-TTACCTTT-TCATGTAATTACATAAAACATTATT
4373917 AATTAC
63 AATTAC
*
4373923 ATAT-AAACATTACAAGTTATACAAAACTTTACCTTTTCATGTAATTACATAAAGCATTATTAAT
1 ATATCAAACATTACAAGTTATACAAAACTTTACCTTTTCATGTAATTACATAAAACATTATTAAT
4373987 T
66 T
4373988 TTCATTTACA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
66 1 0.02
67 42 0.74
68 10 0.18
69 4 0.07
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.41
Consensus pattern (68 bp):
ATATCAAACATTACAAGTTATACAAAACTTTACCTTTTCATGTAATTACATAAAACATTATTAAT
TAC
Found at i:4374561 original size:90 final size:87
Alignment explanation
Indices: 4374465--4374665 Score: 235
Period size: 87 Copynumber: 2.3 Consensus size: 87
4374455 AATAAATAAA
* * ** *
4374465 AATATTTTATGTAATTACATGTAAAGCTCATATTTTATATATGTAAC-TGGTAAT-TGTTTATAT
1 AATATTTTATGTAATTACATGTAAAGAT-A-ATGTT-T-TATGTAACTTAATAATAT-TTTACAT
* * *
4374528 AATTGATAATGTTTATATGTAATTAGT
61 AACTGATAATGTTTATATATAATTACT
* *
4374555 AATATTTTATATAATTACATGTAAAGATAATGTTTTATGTAACTTAATAATATTTTACATAGCTG
1 AATATTTTATGTAATTACATGTAAAGATAATGTTTTATGTAACTTAATAATATTTTACATAACTG
*
4374620 GTAATGTTTATATATAATTACT
66 ATAATGTTTATATATAATTACT
*
4374642 AATGTTTTATGTAATTACATGTAA
1 AATATTTTATGTAATTACATGTAA
4374666 TTTTATTGAA
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
86 8 0.08
87 56 0.58
88 5 0.05
89 1 0.01
90 26 0.27
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (87 bp):
AATATTTTATGTAATTACATGTAAAGATAATGTTTTATGTAACTTAATAATATTTTACATAACTG
ATAATGTTTATATATAATTACT
Found at i:4374658 original size:19 final size:20
Alignment explanation
Indices: 4374621--4374659 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
4374611 ACATAGCTGG
4374621 TAATGTTTATATATAATTAC
1 TAATGTTTATATATAATTAC
*
4374641 TAATGTTT-TATGTAATTAC
1 TAATGTTTATATATAATTAC
4374660 ATGTAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (20 bp):
TAATGTTTATATATAATTAC
Found at i:4374917 original size:20 final size:20
Alignment explanation
Indices: 4374870--4374917 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
4374860 AGCTAATTTT
*
4374870 TATGTAATTAGTAATATTTA
1 TATGTAATTAGTAATAGTTA
* *
4374890 TTTATAATTAGGTAA-AGTTA
1 TATGTAATTA-GTAATAGTTA
4374910 TATGTAAT
1 TATGTAAT
4374918 ACAATTTATG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (20 bp):
TATGTAATTAGTAATAGTTA
Found at i:4376717 original size:32 final size:31
Alignment explanation
Indices: 4376681--4376777 Score: 87
Period size: 32 Copynumber: 3.2 Consensus size: 31
4376671 AATTTAATTA
4376681 ATATTAATATATTATATATTTTTAAATATTTT
1 ATATTAATATATTATATATTTTTAAA-ATTTT
* * *
4376713 ATATTTATTTATT-TGATA-TTTAAAAATTTT
1 ATATTAATATATTAT-ATATTTTTAAAATTTT
*
4376743 AAATATTAA-ATATT-TATAATTTTAAAA-TTT
1 --ATATTAATATATTATATATTTTTAAAATTTT
4376773 ATATT
1 ATATT
4376778 TGCATAAACA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
28 5 0.09
30 11 0.20
31 19 0.35
32 20 0.36
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (31 bp):
ATATTAATATATTATATATTTTTAAAATTTT
Found at i:4376719 original size:15 final size:15
Alignment explanation
Indices: 4376701--4376778 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
4376691 ATTATATATT
4376701 TTTAAATATTTTATA
1 TTTAAATATTTTATA
** *
4376716 TTTATTTATTTGATA
1 TTTAAATATTTTATA
* *
4376731 TTTAAAAATTTTAAA
1 TTTAAATATTTTATA
4376746 TATTAAATA-TTTATAA
1 T-TTAAATATTTTAT-A
4376762 TTTTAAA-A-TTTATA
1 -TTTAAATATTTTATA
4376776 TTT
1 TTT
4376779 GCATAAACAT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
13 3 0.06
14 1 0.02
15 33 0.66
16 12 0.24
17 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (15 bp):
TTTAAATATTTTATA
Found at i:4376749 original size:24 final size:22
Alignment explanation
Indices: 4376722--4376778 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
4376712 TATATTTATT
4376722 TATTTGATATTTAAAAATTTTAAA
1 TATTT-ATATTT-AAAATTTTAAA
* *
4376746 TATTAAATATTTATAATTTTAAA
1 TATT-TATATTTAAAATTTTAAA
4376769 -ATTTATATTT
1 TATTTATATTT
4376779 GCATAAACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 6 0.21
22 3 0.10
23 10 0.34
24 10 0.34
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTTATATTTAAAATTTTAAA
Found at i:4376823 original size:21 final size:22
Alignment explanation
Indices: 4376798--4376841 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
4376788 TATATACACA
4376798 TGCATGTA-ATAGAAATATATT
1 TGCATGTATATAGAAATATATT
* *
4376819 TGCATGTATATATAATTATATT
1 TGCATGTATATAGAAATATATT
4376841 T
1 T
4376842 TATTGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (22 bp):
TGCATGTATATAGAAATATATT
Found at i:4383039 original size:46 final size:46
Alignment explanation
Indices: 4382972--4383059 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
4382962 AAGTGGGAAC
* * *
4382972 GAATCACTATGGACTTTATATCAGGTTTACCTAAAACACCAAGAAT
1 GAATCACTATAGACTTCATATCAGGTTTACCCAAAACACCAAGAAT
* *
4383018 GAATCATTATAGACTTCATATCAGGTTTACCCGAAACACCAA
1 GAATCACTATAGACTTCATATCAGGTTTACCCAAAACACCAA
4383060 AGACAAATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (46 bp):
GAATCACTATAGACTTCATATCAGGTTTACCCAAAACACCAAGAAT
Found at i:4384406 original size:30 final size:30
Alignment explanation
Indices: 4384372--4384431 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
4384362 TTCATGAAAT
4384372 TTTTATGTTTTTGATTAATAGGCACAAAAC
1 TTTTATGTTTTTGATTAATAGGCACAAAAC
4384402 TTTTATGTTTTTGATTAATAGGCACAAAAC
1 TTTTATGTTTTTGATTAATAGGCACAAAAC
4384432 CCATGCTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (30 bp):
TTTTATGTTTTTGATTAATAGGCACAAAAC
Found at i:4386067 original size:38 final size:38
Alignment explanation
Indices: 4385958--4386128 Score: 170
Period size: 38 Copynumber: 4.5 Consensus size: 38
4385948 TGCCACTGGT
*
4385958 TAAGAATAGT-GATTTTTGTATTGAACTATGCCA-CTAGA
1 TAAGAATAGTAG-TTTTTGTATTGAACCATGCCATC-AGA
* * *
4385996 TAAGAATAGTAGTTTTTGTAATGAACCGTGCCATCGGA
1 TAAGAATAGTAGTTTTTGTATTGAACCATGCCATCAGA
* *
4386034 TAAGAATAGTAGTTTTTCTATTGAACCATGCCATCAGT
1 TAAGAATAGTAGTTTTTGTATTGAACCATGCCATCAGA
* * * * * *
4386072 TTAGAATAGTAGTTTTCGT-TTCGAACCGTGCTACCAGTT
1 TAAGAATAGTAGTTTTTGTATT-GAACCATGCCATCAG-A
4386111 TAA-AATAGTAGTTTTTGT
1 TAAGAATAGTAGTTTTTGT
4386129 TCATAGCTTG
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
37 2 0.02
38 105 0.94
39 5 0.04
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.37
Consensus pattern (38 bp):
TAAGAATAGTAGTTTTTGTATTGAACCATGCCATCAGA
Found at i:4389409 original size:21 final size:22
Alignment explanation
Indices: 4389385--4389430 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
4389375 TTCTTGTCTT
*
4389385 ATATATAT-TTACT-TAAATTAA
1 ATATATATCTTA-TATAAATAAA
4389406 ATATATATCTTATATAAATAAA
1 ATATATATCTTATATAAATAAA
4389428 ATA
1 ATA
4389431 AAAATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATATATCTTATATAAATAAA
Found at i:4390841 original size:17 final size:17
Alignment explanation
Indices: 4390819--4390851 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4390809 CTTGGCCAAT
*
4390819 GAAAATTCTAGCAACAA
1 GAAAATTCCAGCAACAA
4390836 GAAAATTCCAGCAACA
1 GAAAATTCCAGCAACA
4390852 TGGGTTCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.12, T:0.15
Consensus pattern (17 bp):
GAAAATTCCAGCAACAA
Found at i:4391816 original size:20 final size:20
Alignment explanation
Indices: 4391771--4391824 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
4391761 ATTTTTACAA
4391771 TTTGTATCGATACA-TAAGT
1 TTTGTATCGATACATTAAGT
*
4391790 TTTGTATCGATACATTTA-T
1 TTTGTATCGATACATTAAGT
4391809 TATTGTATCGATACAT
1 T-TTGTATCGATACAT
4391825 CTAGGTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTGTATCGATACATTAAGT
Found at i:4400271 original size:33 final size:32
Alignment explanation
Indices: 4400231--4400407 Score: 130
Period size: 34 Copynumber: 5.4 Consensus size: 32
4400221 ACCCTTCCTA
* *
4400231 AAGTCCACGACTCAATAGCATCATTTTTCTTCC
1 AAGTCCACGACTCAGTGGCATC-TTTTTCTTCC
* * *
4400264 AAGTCCACAACTTAGTGGCATCTTTTTTTCTCCC
1 AAGTCCACGACTCAGTGGCATC--TTTTTCTTCC
* *
4400298 AAAGTCCACGACTCAGTGGCATC-TCTT-TTCA
1 -AAGTCCACGACTCAGTGGCATCTTTTTCTTCC
* *
4400329 AAGTCCACGACTCTGTGGCACCTCTTTGTT-TTCA
1 AAGTCCACGACTCAGTGGCA--TCTTT-TTCTTCC
* *
4400363 AAG-CTCACAACTTC-GTGGCATCTTTTTCTTCA
1 AAGTC-CACGAC-TCAGTGGCATCTTTTTCTTCC
*
4400395 AAGTCCACAACTC
1 AAGTCCACGACTC
4400408 CATGGCACCT
Statistics
Matches: 120, Mismatches: 14, Indels: 22
0.77 0.09 0.14
Matches are distributed among these distances:
30 19 0.16
31 6 0.05
32 23 0.19
33 21 0.17
34 29 0.24
35 22 0.18
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.33
Consensus pattern (32 bp):
AAGTCCACGACTCAGTGGCATCTTTTTCTTCC
Found at i:4400316 original size:35 final size:32
Alignment explanation
Indices: 4400230--4400407 Score: 134
Period size: 33 Copynumber: 5.4 Consensus size: 32
4400220 CACCCTTCCT
* *
4400230 AAAGTCCACGACTCAATAGCATCATTTTTCTTCC
1 AAAGTCCACGACTCAGTGGCATC-TTTTTC-TCC
* *
4400264 -AAGTCCACAACTTAGTGGCATCTTTTTTTCTCCC
1 AAAGTCCACGACTCAGTGGCATC--TTTTTCT-CC
*
4400298 AAAGTCCACGACTCAGTGGCATCTCTTT-T-C
1 AAAGTCCACGACTCAGTGGCATCTTTTTCTCC
* *
4400328 AAAGTCCACGACTCTGTGGCACCTCTTTGTT-TTC
1 AAAGTCCACGACTCAGTGGCA--TCTTT-TTCTCC
* *
4400362 AAAG-CTCACAACTTC-GTGGCATCTTTTTCTTC
1 AAAGTC-CACGAC-TCAGTGGCATCTTTTTCTCC
*
4400394 AAAGTCCACAACTC
1 AAAGTCCACGACTC
4400408 CATGGCACCT
Statistics
Matches: 122, Mismatches: 11, Indels: 25
0.77 0.07 0.16
Matches are distributed among these distances:
30 21 0.17
31 4 0.03
32 23 0.19
33 28 0.23
34 24 0.20
35 22 0.18
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.33
Consensus pattern (32 bp):
AAAGTCCACGACTCAGTGGCATCTTTTTCTCC
Found at i:4400331 original size:30 final size:30
Alignment explanation
Indices: 4400297--4400355 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
4400287 TTTTTTCTCC
*
4400297 CAAAGTCCACGACTCAGTGGCATCTCTTTT
1 CAAAGTCCACGACTCAGTGGCACCTCTTTT
*
4400327 CAAAGTCCACGACTCTGTGGCACCTCTTT
1 CAAAGTCCACGACTCAGTGGCACCTCTTT
4400356 GTTTTCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (30 bp):
CAAAGTCCACGACTCAGTGGCACCTCTTTT
Found at i:4400381 original size:34 final size:34
Alignment explanation
Indices: 4400254--4400808 Score: 239
Period size: 32 Copynumber: 17.0 Consensus size: 34
4400244 AATAGCATCA
* ** * *
4400254 TTTTTCTTCCAAGTCCACAACTTAGTGGCATCTT
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* * *
4400288 TTTTTCTCCCAAAGTCCACGACTCAGTGGCA--TC
1 TTTTTCT-TCAAAGTCCACAACTCCGTGGCACCTC
* * *
4400321 -TCTT-TTCAAAGTCCACGACTCTGTGGCACCTC
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
*
4400353 TTTGTT-TTCAAAG-CTCACAACTTCGTGGCA--TC
1 TTT-TTCTTCAAAGTC-CACAACTCCGTGGCACCTC
*
4400385 TTTTTCTTCAAAGTCCACAACTCCATGGCACCT-
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* * ** *
4400418 TGTTCCTTTTAAGTCCACAACTCCATGGCA-CT-
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* ** *
4400450 TTTTTCTTTTCAAAGCCCACAACTCTATGG-A-ATC
1 TTTTTC--TTCAAAGTCCACAACTCCGTGGCACCTC
4400484 TTTTCCTCTT--AAGTCCACAACTCCGTGGCACC-C
1 TTTT--TCTTCAAAGTCCACAACTCCGTGGCACCTC
4400517 ---TT-TT--AAGTCCACAACTCCGTGGCACCT-
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* * *
4400544 TTTTCTTTTCAAAAGTCCACAACTTCATGGCA--TC
1 TTTT-TCTTC-AAAGTCCACAACTCCGTGGCACCTC
* ** *
4400578 TTTTCCTTTTAAGTCTACAACTCCGTGGCACCT-
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* ** * * ** *
4400611 TTTTCTTTTCAAAAACCCATAATTCCGTAACA-AT-
1 TTTT-TCTTC-AAAGTCCACAACTCCGTGGCACCTC
* **
4400645 TTTTCCTTTTAAGTCCACAACTCCGTGGCA-CT-
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* ** * *
4400677 TTGTTCCTTTTAAGTCCACAATTCCGTGACACCT-
1 TT-TTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* * * *
4400711 TTTCTT-TTCAAAGCCCACAATTTCATGGCA--TC
1 TTT-TTCTTCAAAGTCCACAACTCCGTGGCACCTC
*
4400743 TTTTCCTTCAAAGTCCACAACTCCGTGGCACCT-
1 TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
* * *
4400776 TGTTCTT-TT-TAAGCCCACAACTCCATGGCACCT
1 T-TT-TTCTTCAAAGTCCACAACTCCGTGGCACCT
4400809 TCCTCTAAAG
Statistics
Matches: 402, Mismatches: 79, Indels: 81
0.72 0.14 0.14
Matches are distributed among these distances:
27 24 0.06
28 1 0.00
30 23 0.06
31 6 0.01
32 110 0.27
33 110 0.27
34 75 0.19
35 51 0.13
36 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.35
Consensus pattern (34 bp):
TTTTTCTTCAAAGTCCACAACTCCGTGGCACCTC
Found at i:4400437 original size:33 final size:32
Alignment explanation
Indices: 4400329--4400809 Score: 348
Period size: 32 Copynumber: 14.8 Consensus size: 32
4400319 TCTCTTTTCA
* * *
4400329 AAGTCCACGACTCTGTGGCACCTCTTT-GTTTT
1 AAGTCCACAACTCCGTGGCACCT-TTTCCTTTT
* * * **
4400361 CAAAG-CTCACAACTTCGTGGCATCTTTTTCTTCA
1 --AAGTC-CACAACTCCGTGGCACCTTTTCCTTTT
*
4400395 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTCCTTTT
* * *
4400428 AAGTCCACAACTCCATGGCACTTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* ** * * *
4400460 CAAAGCCCACAACTCTATGGAATCTTTTCCTCTT
1 --AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
4400494 AAGTCCACAACTCCGTGGCA-C----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
*
4400521 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * *
4400553 CAAAAGTCCACAACTTCATGGCATCTTTTCCTTTT
1 ---AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* *
4400588 AAGTCTACAACTCCGTGGCACCTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
** * * ** **
4400620 CAAAAACCCATAATTCCGTAACAATTTTTCCTTTT
1 ---AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
*
4400655 AAGTCCACAACTCCGTGGCACTTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTCCTTTT
* *
4400688 AAGTCCACAATTCCGTGACACCTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * **
4400719 CAAAGCCCACAATTTCATGGCATCTTTTCCTTCA
1 --AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
*
4400753 AAGTCCACAACTCCGTGGCACCTTGTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTCCTTTT
* *
4400786 AAGCCCACAACTCCATGGCACCTT
1 AAGTCCACAACTCCGTGGCACCTT
4400810 CCTCTAAAGC
Statistics
Matches: 351, Mismatches: 74, Indels: 45
0.75 0.16 0.10
Matches are distributed among these distances:
27 25 0.07
28 1 0.00
31 6 0.02
32 112 0.32
33 110 0.31
34 47 0.13
35 50 0.14
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.35
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
Found at i:4400530 original size:27 final size:27
Alignment explanation
Indices: 4400492--4400547 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
4400482 TCTTTTCCTC
4400492 TTAAGTCCACAACTCCGTGGCACCCTT
1 TTAAGTCCACAACTCCGTGGCACCCTT
*
4400519 TTAAGTCCACAACTCCGTGGCACCTTT
1 TTAAGTCCACAACTCCGTGGCACCCTT
4400546 TT
1 TT
4400548 CTTTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.30
Consensus pattern (27 bp):
TTAAGTCCACAACTCCGTGGCACCCTT
Found at i:4400599 original size:67 final size:66
Alignment explanation
Indices: 4400264--4400809 Score: 330
Period size: 67 Copynumber: 8.4 Consensus size: 66
4400254 TTTTTCTTCC
** * * * *
4400264 AAGTCCACAACTTAGTGGCATCTTTTT-TTCTCCCAAAGTCCACGAC-TCAGTGGCATCTCTT--
1 AAGTCCACAACTCCGTGGCACCTTTTTCTT-T-TCAAAGTCCACAACTTC-GTGGCATCTTTTCC
**
4400325 TTCA
63 TTTT
* * * * *
4400329 AAGTCCACGACTCTGTGGCACCTCTTTGTTTTCAAAG-CTCACAACTTCGTGGCATCTTTTTCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGTC-CACAACTTCGTGGCATCTTTTCCTT
**
4400393 CA
65 TT
* * * * *
4400395 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT--AAGTCCACAACTCCATGGCA-CTTTTTTCT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTTCAAAGTCCACAACTTCGTGGCATC-TTTTCCT
4400457 TTT
64 TTT
* ** * * * * *
4400460 CAAAGCCCACAACTCTATGGAATCTTTTCCTCTT--AAGTCCACAACTCCGTGGCA-C----CCT
1 --AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACAACTTCGTGGCATCTTTTCCT
4400518 TTT
64 TTT
*
4400521 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAAGTCCACAACTTCATGGCATCTTTTCCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTC-AAAGTCCACAACTTCGTGGCATCTTTTCCTT
4400586 TT
65 TT
* ** * **
4400588 AAGTCTACAACTCCGTGGCACCTTTTTCTTTTCAAAAACC-CATAATTCCGTAACAAT-TTTTCC
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACA-ACTT-CGTGGC-ATCTTTTCC
4400651 TTTT
63 TTTT
* *
4400655 AAGTCCACAACTCCGTGGCA-CTTTGTTCCTTTT--AAGTCCACAA-TTCCGTGACACCTTTT-C
1 AAGTCCACAACTCCGTGGCACCTTT-TT-CTTTTCAAAGTCCACAACTT-CGTGGCATCTTTTCC
4400715 TTTT
63 TTTT
* * * * * * * * *
4400719 CAAAGCCCACAATTTCATGGCATC-TTTTC-CTTCAAAGTCCACAACTCCGTGGCACCTTGTTCT
1 --AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACAACTTCGTGGCATCTT-TTCC
4400782 TTTT
63 TTTT
* *
4400786 AAGCCCACAACTCCATGGCACCTT
1 AAGTCCACAACTCCGTGGCACCTT
4400810 CCTCTAAAGC
Statistics
Matches: 390, Mismatches: 57, Indels: 67
0.76 0.11 0.13
Matches are distributed among these distances:
59 25 0.06
61 5 0.01
62 18 0.05
63 4 0.01
64 29 0.07
65 104 0.27
66 93 0.24
67 105 0.27
68 7 0.02
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.35
Consensus pattern (66 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACAACTTCGTGGCATCTTTTCCTTT
T
Found at i:4400602 original size:94 final size:92
Alignment explanation
Indices: 4400299--4400614 Score: 337
Period size: 99 Copynumber: 3.3 Consensus size: 92
4400289 TTTTCTCCCA
* * * * * * *
4400299 AAGTCCACGACTCAGTGGCATCTCTTTTCAAAGTCCACGACTCTGTGGCACCTCTTTGTTTTCAA
1 AAGTCCACAACTCCGTGGCA-CCCTTTT--AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAA
* * **
4400364 AGCTCACAACTTCGTGGCATCTTTTTCTTCA
63 AGC-CACAACTTCATGGCATCTTTTCCTTTT
* * *
4400395 AAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCA-C-----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
4400460 CAAAGCCCACAAC-TCTATGGAATCTTTTCCTCTT
60 CAAAG-CCACAACTTC-ATGGCATCTTTTCCTTTT
4400494 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAAG
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC-AAAG
4400559 TCCACAACTTCATGGCATCTTTTCCTTTT
65 -CCACAACTTCATGGCATCTTTTCCTTTT
* *
4400588 AAGTCTACAACTCCGTGGCACCTTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
4400615 CTTTTCAAAA
Statistics
Matches: 186, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
93 37 0.20
94 52 0.28
95 2 0.01
96 18 0.10
98 3 0.02
99 68 0.37
100 1 0.01
101 5 0.03
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (92 bp):
AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
CACAACTTCATGGCATCTTTTCCTTTT
Found at i:4400771 original size:98 final size:99
Alignment explanation
Indices: 4400555--4400809 Score: 302
Period size: 98 Copynumber: 2.6 Consensus size: 99
4400545 TTTCTTTTCA
* * *
4400555 AAAGTCCACAACTTCATGGCA-TCTT-TTCCTTTTAAGTCTACAACTCCGTGGCACCTTTTTCTT
1 AAAGTCCACAACTCCGTGGCACT-TTGTTCCTTTTAAGTCCACAACTCCGTGGCACC-TTTTCTT
* * *
4400618 TTCAAAAACCCATAATTCCGTAACAATTTTTCCTTT
64 TTCAAAAACCCACAATTCCATAACAATTTTTCCTTC
* * *
4400654 TAAGTCCACAACTCCGTGGCACTTTGTTCCTTTTAAGTCCACAATTCCGTGACACCTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACTTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTT
* * **
4400719 C-AAAGCCCACAATTTCATGGC-ATCTTTTCCTTC
66 CAAAAACCCACAATTCCATAACAAT-TTTTCCTTC
* * * *
4400752 AAAGTCCACAACTCCGTGGCACCTTGTTCTTTTTAAGCCCACAACTCCATGGCACCTT
1 AAAGTCCACAACTCCGTGGCACTTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTT
4400810 CCTCTAAAGC
Statistics
Matches: 133, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
97 2 0.02
98 73 0.55
99 30 0.23
100 28 0.21
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.35
Consensus pattern (99 bp):
AAAGTCCACAACTCCGTGGCACTTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTT
CAAAAACCCACAATTCCATAACAATTTTTCCTTC
Found at i:4401007 original size:32 final size:32
Alignment explanation
Indices: 4400953--4401170 Score: 221
Period size: 32 Copynumber: 6.8 Consensus size: 32
4400943 TTCTTCAAAA
* * *
4400953 CCCATACAAGTCGGTGGTAACCCTTTCTAAAG
1 CCCACACAAGTCGATGGCAACCCTTTCTAAAG
* *
4400985 CCCACACAAGTCGATAGCAACCCTTTCCAAAG
1 CCCACACAAGTCGATGGCAACCCTTTCTAAAG
* *
4401017 CCCACGCAAGTCGATGGCAACCCTTTCCAAAG
1 CCCACACAAGTCGATGGCAACCCTTTCTAAAG
* *
4401049 CCCACACAAGTCGATGG-AA-ACTTTCTTCAAAA
1 CCCACACAAGTCGATGGCAACCCTTTC-T-AAAG
* *
4401081 CCCACACAAGTTGGTGGCAA-CCTCTTC-AGAAG
1 CCCACACAAGTCGATGGCAACCCT-TTCTA-AAG
* *
4401113 CCCATACAAGTCGGTGGCAACCC-TTCTTAAAG
1 CCCACACAAGTCGATGGCAACCCTTTC-TAAAG
* *
4401145 CCCACACAAGTCGATGGTAACTCTTT
1 CCCACACAAGTCGATGGCAACCCTTT
4401171 TAAGTCCAAT
Statistics
Matches: 156, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
30 5 0.03
31 6 0.04
32 133 0.85
33 9 0.06
34 3 0.02
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (32 bp):
CCCACACAAGTCGATGGCAACCCTTTCTAAAG
Found at i:4401222 original size:49 final size:49
Alignment explanation
Indices: 4401169--4401444 Score: 281
Period size: 49 Copynumber: 5.9 Consensus size: 49
4401159 TGGTAACTCT
* *
4401169 TTTAAGTCCAATGTCGCTAGCCTTGGAAT-AGCACATTGGCATCATCATC
1 TTTAAGTCCAATGTCGCTGGCCTT-GAATCAGCACATTGGCACCATCATC
* * *
4401218 TTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGG---CAT--TC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCATCATC
* * * * *
4401262 -CTAAGCCCAATATCACTGGCCTTGAATCAGCAGATT-G-A-CAT--TC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCATCATC
* *
4401305 -TTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCATCATC
* *
4401353 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCATCATC
* * * * *
4401402 TTTAAGTCCGATATTGCTGGCCTTGAATCAGCATATTAGCACC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
4401445 TTTATCATCC
Statistics
Matches: 197, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.01
43 66 0.34
44 3 0.02
45 1 0.01
46 5 0.03
48 6 0.03
49 115 0.58
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCATCATC
Found at i:4401330 original size:86 final size:89
Alignment explanation
Indices: 4401219--4401385 Score: 223
Period size: 86 Copynumber: 1.9 Consensus size: 89
4401209 ATCATCATCT
* * *
4401219 TTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCA-TTC-C-TAAGCCCAATATCACTGG
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACTTCACTTAAGCCCAATATCACTGG
4401281 CCTTGAATCAGCAGATTGACATTC
66 CCTTGAATCAGCAGATTGACATTC
* * * *
4401305 TTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGC
1 TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCA-CTTCA-C-TTAAGCCCAATATCAC
4401370 TGGCCTTGAATCAGCA
63 TGGCCTTGAATCAGCA
4401386 CATTAGCACC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
86 36 0.53
88 3 0.04
90 1 0.01
92 28 0.41
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (89 bp):
TTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACTTCACTTAAGCCCAATATCACTGG
CCTTGAATCAGCAGATTGACATTC
Found at i:4401525 original size:18 final size:17
Alignment explanation
Indices: 4401502--4401535 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4401492 AGCATATTGG
*
4401502 CATCTTTATCACTCTTTT
1 CATCTTCATCA-TCTTTT
4401520 CATCTTCATCATCTTT
1 CATCTTCATCATCTTT
4401536 AAGACCAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.29, G:0.00, T:0.53
Consensus pattern (17 bp):
CATCTTCATCATCTTTT
Found at i:4404024 original size:27 final size:27
Alignment explanation
Indices: 4403994--4404046 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
4403984 ATATCAAATT
**
4403994 TTATTCATCGGGGATACTCCAACCTCA
1 TTATTCAGAGGGGATACTCCAACCTCA
*
4404021 TTATTCCGAGGGGATACTCCAACCTC
1 TTATTCAGAGGGGATACTCCAACCTC
4404047 TTTTTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (27 bp):
TTATTCAGAGGGGATACTCCAACCTCA
Found at i:4408422 original size:28 final size:28
Alignment explanation
Indices: 4408341--4408422 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
4408331 TTTTGGAGAT
*
4408341 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
4408369 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
4408397 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
4408423 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:4408567 original size:51 final size:50
Alignment explanation
Indices: 4408405--4408575 Score: 180
Period size: 51 Copynumber: 3.3 Consensus size: 50
4408395 GAAATAACGA
* * *
4408405 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCG
* * * * * *
4408456 GAATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 G-GTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATC-G
* * *
4408510 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCAG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATC-G
4408561 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
4408576 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 30 0.31
54 12 0.12
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCG
Found at i:4408621 original size:27 final size:28
Alignment explanation
Indices: 4408560--4408633 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
4408550 AATAAAGTCA
*
4408560 GGGTTGGAGTATCCCCTCA-GAAATAACG
1 GGGTTGGAGTATCCCC-GATGAAATAACG
*
4408588 GGGTTGGAGTATCCCCGATG-ATTAACG
1 GGGTTGGAGTATCCCCGATGAAATAACG
*
4408615 GGGTTGGAGTGTCCCCGAT
1 GGGTTGGAGTATCCCCGAT
4408634 TGTGAAGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCGATGAAATAACG
Found at i:4411116 original size:13 final size:13
Alignment explanation
Indices: 4411098--4411123 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4411088 ACAAAGATCC
4411098 ATGTATCGATACA
1 ATGTATCGATACA
4411111 ATGTATCGATACA
1 ATGTATCGATACA
4411124 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4411119 original size:33 final size:33
Alignment explanation
Indices: 4411077--4411143 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
4411067 AAAATTTCCA
***
4411077 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
4411110 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
4411143 A
1 A
4411144 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:4411187 original size:19 final size:18
Alignment explanation
Indices: 4411163--4411230 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
4411153 CAGTAGCTAA
4411163 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
4411182 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
4411197 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
4411214 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
4411231 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:4411203 original size:13 final size:13
Alignment explanation
Indices: 4411185--4411209 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4411175 ACAATACTTA
4411185 TGTATCGATACAT
1 TGTATCGATACAT
4411198 TGTATCGATACA
1 TGTATCGATACA
4411210 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4411207 original size:32 final size:32
Alignment explanation
Indices: 4411166--4411228 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
4411156 TAGCTAATTA
*
4411166 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
4411198 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
4411229 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:4411310 original size:21 final size:21
Alignment explanation
Indices: 4411286--4411342 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
4411276 CATTTGTAGG
4411286 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
4411307 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
4411328 ATGTATCGATACATT
1 ATGTATCGATACATT
4411343 TAATTTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:4412055 original size:55 final size:55
Alignment explanation
Indices: 4411960--4412593 Score: 834
Period size: 55 Copynumber: 11.4 Consensus size: 55
4411950 ATAAAGTGTA
* * * * * * *
4411960 TCCTTCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
**
4412015 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAATAAAAAG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGT-----G
** * *
4412074 CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 --TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* **
4412131 TCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
4412186 TCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
4412241 TCCTGCTCTTTGAGGACT-AGAAGGCGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
4412296 TCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
4412352 TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
4412407 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
4412462 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
4412517 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
4412572 TCCTGCTCTTTGAGGACTGAAA
1 TCCTGCTCTTTGAGGACTGAAA
4412594 AGCGGAAGGA
Statistics
Matches: 519, Mismatches: 41, Indels: 39
0.87 0.07 0.07
Matches are distributed among these distances:
54 16 0.03
55 393 0.76
56 58 0.11
57 3 0.01
59 1 0.00
61 44 0.08
62 4 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:4412467 original size:276 final size:277
Alignment explanation
Indices: 4411985--4412595 Score: 942
Period size: 276 Copynumber: 2.2 Consensus size: 277
4411975 AGTAAAAAGT
* *
4411985 GCCACCAACTCGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAA
1 GCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAA
*
4412048 CTTGTGTGGGCTTTAAAAATAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTG
65 CTTGTGTGGGCTTTAAAAAT----AG-ATCCTGCTCTTTGAGGACTGAAAAACGCCACCAACCTG
*
4412113 TGTGGGCTTTAAAAGGTGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT
125 TGTGGGCTTTAAAAGGTGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGGGTGGGCTTT
*
4412178 GAAAGGTGTCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTGTC
190 GAAAGGTGTCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
**
4412243 CTGCTCTTTGAGGACTAGAAGGC
255 CTGCTCTTTGAGGACTAGAAAAC
4412266 GCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAAC
1 GCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAAC
* ** * ** *
4412331 TTGTGTGGGCTTTGAGAGGT-G-TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTGG
66 TTGTGTGGGCTTT-AAAAATAGATCCTGCTCTTTGAGGACTGAAAAACGCCACCAACCTGTGTGG
* * *
4412394 GCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAG
130 GCTTTAAAAGGTGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAG
*
4412459 GTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCT
195 GTGTCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCT
* *
4412524 CTTTGAGGACTGGAAAAT
260 CTTTGAGGACTAGAAAAC
*
4412542 GCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAAG
1 GCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAG
4412596 CGGAAGGAGA
Statistics
Matches: 306, Mismatches: 21, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
276 228 0.75
278 1 0.00
280 2 0.01
281 43 0.14
282 29 0.09
283 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (277 bp):
GCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAAC
TTGTGTGGGCTTTAAAAATAGATCCTGCTCTTTGAGGACTGAAAAACGCCACCAACCTGTGTGGG
CTTTAAAAGGTGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGG
TGTCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTC
TTTGAGGACTAGAAAAC
Found at i:4412516 original size:29 final size:29
Alignment explanation
Indices: 4412483--4412571 Score: 69
Period size: 29 Copynumber: 3.2 Consensus size: 29
4412473 GGGGACTGAA
4412483 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
** * * * **
4412512 AGGTGTCCTGC-TCTT-TGAGGACTGGAA-
1 AGGTG-CCACCAACTTGTGTGGGCTTTAAG
*
4412539 A-ATGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
4412567 AGGTG
1 AGGTG
4412572 TCCTGCTCTT
Statistics
Matches: 39, Mismatches: 16, Indels: 10
0.60 0.25 0.15
Matches are distributed among these distances:
25 3 0.08
26 5 0.13
27 9 0.23
28 9 0.23
29 10 0.26
30 3 0.08
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.28
Consensus pattern (29 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAG
Found at i:4413628 original size:15 final size:14
Alignment explanation
Indices: 4413572--4413633 Score: 83
Period size: 13 Copynumber: 4.5 Consensus size: 14
4413562 CTTTTCTCTC
*
4413572 TTTTTCTTTG-TTT
1 TTTTTTTTTGCTTT
*
4413585 TGTTTTTTTG-TTT
1 TTTTTTTTTGCTTT
4413598 TTTTTTTTTGCTTT
1 TTTTTTTTTGCTTT
4413612 TTTTTTTTTGCTCTT
1 TTTTTTTTTGCT-TT
4413627 TTTTTTT
1 TTTTTTT
4413634 AAGAGAAGGT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
13 20 0.45
14 15 0.34
15 9 0.20
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.85
Consensus pattern (14 bp):
TTTTTTTTTGCTTT
Found at i:4417351 original size:20 final size:20
Alignment explanation
Indices: 4417320--4417375 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
4417310 GTCAAAACCC
*
4417320 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
4417340 TTAAATGTATCGATACATAT
1 TGAAATGTATCGATACACAT
* *
4417360 TGCATTGTATCGATAC
1 TGAAATGTATCGATAC
4417376 TTGAAAAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:4417467 original size:13 final size:13
Alignment explanation
Indices: 4417449--4417473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4417439 ACACACAATA
4417449 TGTATCGATACAT
1 TGTATCGATACAT
4417462 TGTATCGATACA
1 TGTATCGATACA
4417474 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4417470 original size:32 final size:33
Alignment explanation
Indices: 4417429--4417496 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
4417419 GTAGCCAAAC
*
4417429 TTGTATCGATACA-CACAATATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
4417461 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
4417494 TTG
1 TTG
4417497 GCTTGTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:4419105 original size:3 final size:3
Alignment explanation
Indices: 4419084--4419117 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
4419074 CATCAAGGAC
* *
4419084 GAT GAA GAT GAT GAA GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
4419118 GTGACTCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.26
Consensus pattern (3 bp):
GAT
Found at i:4423684 original size:13 final size:13
Alignment explanation
Indices: 4423666--4423704 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
4423656 ACAGTATTCT
4423666 TTGTATCGATACA
1 TTGTATCGATACA
4423679 TTGTATCGATACA
1 TTGTATCGATACA
*
4423692 CTGTATCGATACA
1 TTGTATCGATACA
4423705 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4423871 original size:20 final size:20
Alignment explanation
Indices: 4423836--4423876 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
4423826 CAAAATTCTT
4423836 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
4423858 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
4423877 TTCAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:4425537 original size:31 final size:31
Alignment explanation
Indices: 4425502--4425616 Score: 115
Period size: 31 Copynumber: 3.5 Consensus size: 31
4425492 AATAAATTTT
4425502 TGATTAAGGGGGAGAAAGAGATAAGTGCTTA
1 TGATTAAGGGGGAGAAAGAGATAAGTGCTTA
* * ** *
4425533 TGATTAAGGGGGAGAATGCGAATTTATTA-TAAATTTT
1 TGATTAAGGGGGAGAAAGAG-A--TA--AGT--GCTTA
4425570 TGATTAAGGGGGAGAAAGAGATAAGTGCTTA
1 TGATTAAGGGGGAGAAAGAGATAAGTGCTTA
4425601 TGATTAAGGGGGAGAA
1 TGATTAAGGGGGAGAA
4425617 TGCGAATTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
31 36 0.55
32 2 0.03
33 1 0.02
34 4 0.06
35 1 0.02
36 2 0.03
37 20 0.30
ACGTcount: A:0.37, C:0.03, G:0.33, T:0.27
Consensus pattern (31 bp):
TGATTAAGGGGGAGAAAGAGATAAGTGCTTA
Found at i:4425579 original size:68 final size:68
Alignment explanation
Indices: 4425493--4425654 Score: 283
Period size: 68 Copynumber: 2.4 Consensus size: 68
4425483 ATATGTGCAA
4425493 ATAAATTTTTGATTAAGGGGGAGAAAGAGATAAGTGCTTATGATTAAGGGGGAGAATGCGAATTT
1 ATAAATTTTTGATTAAGGGGGAGAAAGAGATAAGTGCTTATGATTAAGGGGGAGAATGCGAATTT
4425558 ATT
66 ATT
4425561 ATAAATTTTTGATTAAGGGGGAGAAAGAGATAAGTGCTTATGATTAAGGGGGAGAATGCGAATTT
1 ATAAATTTTTGATTAAGGGGGAGAAAGAGATAAGTGCTTATGATTAAGGGGGAGAATGCGAATTT
4425626 ATT
66 ATT
*
4425629 A-AAATTACATT-ATTAAGGGGGAGAAA
1 ATAAATT--TTTGATTAAGGGGGAGAAA
4425655 TGTTTGATTA
Statistics
Matches: 91, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
67 5 0.05
68 84 0.92
69 2 0.02
ACGTcount: A:0.39, C:0.03, G:0.28, T:0.30
Consensus pattern (68 bp):
ATAAATTTTTGATTAAGGGGGAGAAAGAGATAAGTGCTTATGATTAAGGGGGAGAATGCGAATTT
ATT
Found at i:4426232 original size:20 final size:20
Alignment explanation
Indices: 4426184--4426239 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
4426174 GTCAAAACCC
*
4426184 TGAAAAGTATCGATACATAT
1 TGAAATGTATCGATACATAT
* *
4426204 TTAAATGTATCGATACATGT
1 TGAAATGTATCGATACATAT
* *
4426224 TGCATTGTATCGATAC
1 TGAAATGTATCGATAC
4426240 TTGAAAAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (20 bp):
TGAAATGTATCGATACATAT
Found at i:4426331 original size:13 final size:13
Alignment explanation
Indices: 4426313--4426337 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4426303 ACACACAATA
4426313 TGTATCGATACAT
1 TGTATCGATACAT
4426326 TGTATCGATACA
1 TGTATCGATACA
4426338 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4426354 original size:33 final size:32
Alignment explanation
Indices: 4426296--4426360 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
4426286 GCCAAACTTA
*
4426296 TATCGATACACACAATATGTATCGATACATTG
1 TATCGATACACACAAAATGTATCGATACATTG
*
4426328 TATCGATACACCATAAAATGTATCGATACATTG
1 TATCGATACA-CACAAAATGTATCGATACATTG
4426361 GCTTGTAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 10 0.33
33 20 0.67
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.31
Consensus pattern (32 bp):
TATCGATACACACAAAATGTATCGATACATTG
Found at i:4428985 original size:30 final size:30
Alignment explanation
Indices: 4428929--4428985 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
4428919 ACCCAAAAGG
**
4428929 AGCTAGACACTAGCTAGCTTTGCTCAAAAA
1 AGCTAGACACTAGCTAGCTTAACTCAAAAA
*
4428959 AGCTAGACACTGGCTAGCTTAACTCAA
1 AGCTAGACACTAGCTAGCTTAACTCAA
4428986 GGGAGTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (30 bp):
AGCTAGACACTAGCTAGCTTAACTCAAAAA
Found at i:4429226 original size:41 final size:42
Alignment explanation
Indices: 4429170--4429249 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 42
4429160 GTTCCCTTTT
* * *
4429170 ATAGCCGAATCATCATGTCTATTTG-GAAAGAGTTGATTCTG
1 ATAGCCGAATCATCATGTCGATTTGAAAAAGAGATGATTCTG
* *
4429211 ATAGTCGAATTATCATGTCGATTTGAAAAAGAGATGATT
1 ATAGCCGAATCATCATGTCGATTTGAAAAAGAGATGATT
4429250 TTAAAAAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 22 0.67
42 11 0.33
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (42 bp):
ATAGCCGAATCATCATGTCGATTTGAAAAAGAGATGATTCTG
Found at i:4431555 original size:49 final size:49
Alignment explanation
Indices: 4431502--4431654 Score: 111
Period size: 49 Copynumber: 3.1 Consensus size: 49
4431492 TTGATAGTTT
4431502 AGAGAAGGATGATAACTTGTTTAGAGCTATTTAGTTATGGAATGCTGGA
1 AGAGAAGGATGATAACTTGTTTAGAGCTATTTAGTTATGGAATGCTGGA
* * * * ** * **
4431551 AGAGAAAGACTGCT--CTTTCAGTTTTGATCTTATTTTCTT-TTG-ATAG-T-TT
1 AGAGAAGGA-TGATAAC-TT--GTTTAGAGC-TATTTAGTTATGGAAT-GCTGGA
* *
4431600 AGAAAAGGATGGTAACTTGTTTAGAGCTATTTAGTTATGGAATGCTGGA
1 AGAGAAGGATGATAACTTGTTTAGAGCTATTTAGTTATGGAATGCTGGA
4431649 AGAGAA
1 AGAGAA
4431655 AGACTGCTCT
Statistics
Matches: 72, Mismatches: 20, Indels: 24
0.62 0.17 0.21
Matches are distributed among these distances:
46 7 0.10
47 10 0.14
48 7 0.10
49 24 0.33
50 7 0.10
51 10 0.14
52 7 0.10
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.37
Consensus pattern (49 bp):
AGAGAAGGATGATAACTTGTTTAGAGCTATTTAGTTATGGAATGCTGGA
Found at i:4431616 original size:98 final size:98
Alignment explanation
Indices: 4431442--4431929 Score: 872
Period size: 98 Copynumber: 5.0 Consensus size: 98
4431432 AAAGGAGAGA
* *
4431442 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGCTTTGATCTTATTTTCTTTTGATAGTTTAGAGA
1 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
*
4431507 AGGATGATAACTTGTTTAGAGCTATTTAGTTAT
66 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
4431540 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
1 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
4431605 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
66 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
*
4431638 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTCTTGATCTTATTTTCTTTTGATAGTTTAGAAA
1 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
*
4431703 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAA
66 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
*
4431736 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTGGAAA
1 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
* * *
4431801 AGGATGGTACCTTGTTTAAAGCTATTTAGTTAA
66 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
*
4431834 GGAATGCTGGAAGAG--AGACTGCTCTTTCAGTTTTGATCTTATTATCTTTTGATAGTTTAGAAA
1 GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
4431897 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
66 AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
4431930 TTAAATAGGC
Statistics
Matches: 376, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
96 76 0.20
98 300 0.80
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (98 bp):
GGAATGCTGGAAGAGAAAGACTGCTCTTTCAGTTTTGATCTTATTTTCTTTTGATAGTTTAGAAA
AGGATGGTAACTTGTTTAGAGCTATTTAGTTAT
Done.