Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4432388
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 63034 characters in sequence are not A, C, G, or T
File 6 of 27
Found at i:744327 original size:132 final size:132
Alignment explanation
Indices: 744045--744327 Score: 363
Period size: 132 Copynumber: 2.1 Consensus size: 132
744035 CCTAGTTACT
* * *
744045 TATTAGTTGACATGATGGTTTCACCTTGGTTAACCTTCTTTCGGCTTAGGTTTCACCCCGATCGC
1 TATTAGTTGACGTGATGGTTTCACCCTGGTTAACCTTCTTTCGACTTAGGTTTCACCCCGATCGC
* * * *
744110 CTATTAGTTGACGTGATGGTTTCGCCCTGGTCAACCTTCTTTCCACTTAGGTTTCGTCGTGGTCT
66 CTATTAGTTGACATGATGGTTTCGACCTGGTCAACCTTCTTTCCACTTAGGTTTCGCCCTGGTCT
744175 CA
131 CA
* * ** ** * *
744177 TATTAGTTAACGTCATGGTTTCACCCTGGTTAACC-TCTTTTCGACTTAGGTTTTTCCGTGGTTG
1 TATTAGTTGACGTGATGGTTTCACCCTGGTTAACCTTC-TTTCGACTTAGGTTTCACCCCGATCG
* * *
744241 CTTATTAGTTGACATGATGGTTTCGACTTGGTCAACCTTCTTTCGACTTAGGTTTCGCCCTGGTC
65 CCTATTAGTTGACATGATGGTTTCGACCTGGTCAACCTTCTTTCCACTTAGGTTTCGCCCTGGTC
744306 ATC-
130 -TCA
*
744309 TATTAGTTGATGTGATGGT
1 TATTAGTTGACGTGATGGT
744328 CCTTTCGACT
Statistics
Matches: 128, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
131 2 0.02
132 124 0.97
133 2 0.02
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.41
Consensus pattern (132 bp):
TATTAGTTGACGTGATGGTTTCACCCTGGTTAACCTTCTTTCGACTTAGGTTTCACCCCGATCGC
CTATTAGTTGACATGATGGTTTCGACCTGGTCAACCTTCTTTCCACTTAGGTTTCGCCCTGGTCT
CA
Found at i:744352 original size:49 final size:49
Alignment explanation
Indices: 744280--744425 Score: 238
Period size: 49 Copynumber: 3.0 Consensus size: 49
744270 GGTCAACCTT
744280 CTTTCGACTTAGGTTTCGCCCTGGTCATCTATTAGTTGATGTGATGGTC
1 CTTTCGACTTAGGTTTCGCCCTGGTCATCTATTAGTTGATGTGATGGTC
744329 CTTTCGACTTAGGTTTCGCCCTGGTCATCTATTAGTTGATGTGATGGTC
1 CTTTCGACTTAGGTTTCGCCCTGGTCATCTATTAGTTGATGTGATGGTC
* * * * * *
744378 CTTTCGACTTAGGTTTCACCTTAGTCACCTATTACTTAATGTGATGGT
1 CTTTCGACTTAGGTTTCGCCCTGGTCATCTATTAGTTGATGTGATGGT
744426 TTCACCTTGG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 91 1.00
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (49 bp):
CTTTCGACTTAGGTTTCGCCCTGGTCATCTATTAGTTGATGTGATGGTC
Found at i:753848 original size:13 final size:13
Alignment explanation
Indices: 753830--753855 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
753820 ACATTTTGGG
753830 ATGTATCGATACA
1 ATGTATCGATACA
753843 ATGTATCGATACA
1 ATGTATCGATACA
753856 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:753850 original size:33 final size:32
Alignment explanation
Indices: 753808--753875 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
753798 CGTTACAAGC
*
753808 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGG-TGTATCGATA
*
753841 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGGGTGTATCGATA
753873 CAA
1 CAA
753876 ATTTGGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGGTGTATCGATA
Found at i:753965 original size:13 final size:13
Alignment explanation
Indices: 753947--753971 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
753937 ACATTTGGTT
753947 ATGTATCGATACA
1 ATGTATCGATACA
753960 ATGTATCGATAC
1 ATGTATCGATAC
753972 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:758033 original size:13 final size:13
Alignment explanation
Indices: 758015--758039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
758005 CAAAGATCAG
758015 TGTATCGATACAA
1 TGTATCGATACAA
758028 TGTATCGATACA
1 TGTATCGATACA
758040 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:758122 original size:31 final size:32
Alignment explanation
Indices: 758077--758143 Score: 118
Period size: 31 Copynumber: 2.1 Consensus size: 32
758067 GGCAATAGCT
758077 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
758109 TACATT-TATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
758140 TACA
1 TACA
758144 ACACTTTATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:758154 original size:20 final size:19
Alignment explanation
Indices: 758082--758163 Score: 97
Period size: 19 Copynumber: 4.6 Consensus size: 19
758072 TAGCTTACAT
*
758082 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
758101 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
758114 T-TATCGATACAACACTTA
1 TGTATCGATACAACACTTA
758132 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
758152 TGTATCGATACA
1 TGTATCGATACA
758164 GACCGTTGAA
Statistics
Matches: 54, Mismatches: 1, Indels: 15
0.77 0.01 0.21
Matches are distributed among these distances:
12 7 0.13
13 1 0.02
14 1 0.02
15 3 0.06
16 2 0.04
17 1 0.02
18 1 0.02
19 23 0.43
20 15 0.28
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:759188 original size:43 final size:44
Alignment explanation
Indices: 759122--759544 Score: 350
Period size: 43 Copynumber: 9.1 Consensus size: 44
759112 AAAGATGACA
* * *
759122 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-G
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAG
* *
759165 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT----A-G
* * *
759214 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTA-
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAG
*
759257 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--AG
* * * * *
759303 ATGATAGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGATTTA-
1 A--A-GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAG
*
759349 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--AG
* * * * *
759395 AAGAATGCCAATGCGCTGATTCAAGGCCATCAACATTGGAGTTAAAG
1 AAG-GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--AG
* * *
759442 ATAAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATG
1 ---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-----A-G
* *
759495 ACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-
1 ---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAG
759541 AAGG
1 AAGG
759545 AAGATGCCAC
Statistics
Matches: 316, Mismatches: 41, Indels: 46
0.78 0.10 0.11
Matches are distributed among these distances:
43 113 0.36
44 1 0.00
45 3 0.01
46 5 0.02
47 39 0.12
48 2 0.01
49 106 0.34
50 3 0.01
52 2 0.01
53 42 0.13
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAG
Found at i:759238 original size:49 final size:49
Alignment explanation
Indices: 759009--759543 Score: 538
Period size: 49 Copynumber: 11.1 Consensus size: 49
758999 CTTAGGAATG
* * *
759009 TTAAAGACGAAGG-GACCAATGTGCTAATTCAAGGCCAGCGACATTGGAC
1 TTAAAGATGAAGGTG-CCAATATGCTGATTCAAGGCCAGCGACATTGGAC
*** *
759058 TTAAAGATGACAAAGACACCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
759110 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
759162 TT---G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
759205 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
759254 TT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
759297 TTAAAGATGATA-GTGCCAATATGCTGATTCAAGGCTAGCGATATTGGA-
1 TTAAAGATGA-AGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* * *
759345 TT-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* ** * * *
759389 TTAAAGAAGAA--TGCCAATGCGCTGATTCAAGGCCATCAACATTGGAG
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* * *
759436 TTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
*
759485 TTAAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TT-AAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
759538 TTAAAG
1 TTAAAG
759544 GAAGATGCCA
Statistics
Matches: 410, Mismatches: 46, Indels: 57
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.00
43 109 0.27
44 2 0.00
45 1 0.00
46 1 0.00
47 43 0.10
48 3 0.01
49 114 0.28
50 7 0.02
52 90 0.22
53 39 0.10
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (49 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
Found at i:759262 original size:92 final size:92
Alignment explanation
Indices: 759076--759544 Score: 638
Period size: 92 Copynumber: 5.0 Consensus size: 92
759066 GACAAAGACA
* * * *
759076 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGAT
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATATGCTGAT
**
759141 TCAAGGCCAGCGATATTGGACTTGGAGGTG
63 TCAAGGCCAGCGATATTGGACTTAAAGGTG
759171 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
*
759236 AGGCCAACGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
759263 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATA-GTGCCAATATGCTGATTC
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGA-AGGTGCCAATATGCTGATTC
* *
759327 AAGGCTAGCGATATTGGATTTAAAGGTG
65 AAGGCCAGCGATATTGGACTTAAAGGTG
* **
759355 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAA--TGCCAATGCGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * * *
759418 AGGCCATCAACATTGGAGTTAAAGATAAAGATG
66 AGGCCAGCGATATTGGACTTAAAG-----G-TG
*
759451 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGTGCCAATATGCTGA
1 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATG---AAGGTGCCAATATGCTGA
759516 TTCAAGGCCAGCGATATTGGACTTAAAGG
62 TTCAAGGCCAGCGATATTGGACTTAAAGG
759545 AAGATGCCAC
Statistics
Matches: 335, Mismatches: 26, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
90 35 0.10
91 1 0.00
92 175 0.52
93 1 0.00
95 41 0.12
96 37 0.11
97 7 0.02
100 2 0.01
102 36 0.11
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGTG
Found at i:759515 original size:53 final size:50
Alignment explanation
Indices: 759348--759543 Score: 247
Period size: 47 Copynumber: 3.9 Consensus size: 50
759338 TATTGGATTT
*
759348 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-A
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA
* ** * * *
759397 GAA--TGCCAATGCGCTGATTCAAGGCCATCAACATTGGAGTTAAAGAT-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA
*
759444 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGAT-A
* *
759496 CAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
759544 GAAGATGCCA
Statistics
Matches: 126, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
47 41 0.33
49 35 0.28
50 6 0.05
52 4 0.03
53 40 0.32
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (50 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA
Found at i:759626 original size:32 final size:32
Alignment explanation
Indices: 759549--759774 Score: 289
Period size: 32 Copynumber: 7.0 Consensus size: 32
759539 TAAAGGAAGA
* * *
759549 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAA-AGGGT
*
759582 TGCCACCGACTTGTGTGGGCTTTAG-AGGGGAT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGG-T
* *
759614 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAG-AAAGGGT
*
759647 TGCCACCAACTTGTGTGGGCTTT-GAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGA-AAGGGT
759679 TGCCACCGACTTGTGTGGGCTTT-GAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGA-AAGGGT
*
759711 TGCCACCGACTTGTGTGGGCTTTGGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
*
759743 TGCCATCGACTTGTGTGGGCTTT-GAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAG-AAAGGGT
759775 GAAAGATGCC
Statistics
Matches: 177, Mismatches: 10, Indels: 13
0.88 0.05 0.06
Matches are distributed among these distances:
31 4 0.02
32 121 0.68
33 49 0.28
34 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
Found at i:759653 original size:65 final size:63
Alignment explanation
Indices: 759549--759770 Score: 318
Period size: 65 Copynumber: 3.4 Consensus size: 63
759539 TAAAGGAAGA
* *
759549 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGGGGAT
1 TGCCACCAACTTGTGTGGGC-TTTGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAGGG-T
*
759614 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTT-GAAAAAGGTTGCCACCGACTTGTGTGGGCTTT-AGAAGGGT
* * * *
759679 TGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAG-AAGGGT
* *
759743 TGCCATCGACTTGTGTGGGCTTTGAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAAA
759771 GGGTGAAAGA
Statistics
Matches: 144, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
63 1 0.01
64 64 0.44
65 73 0.51
66 6 0.04
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.29
Consensus pattern (63 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAGGGT
Found at i:759734 original size:64 final size:64
Alignment explanation
Indices: 759549--759774 Score: 323
Period size: 64 Copynumber: 3.5 Consensus size: 64
759539 TAAAGGAAGA
*
759549 TGCCACCAACTTGTGTGGGCTTTTGAAGAA-GGTTGCCACCGACTTGTGTGGGCTTT-AGAGGGG
1 TGCCACCAACTTGTGTGGGC-TTTGAA-AAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGG
759612 AT
64 -T
* *
759614 TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTT-GAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
* *
759679 TGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTG-GAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAG-AAGGGT
* *
759743 TGCCATCGACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGGGT
759775 GAAAGATGCC
Statistics
Matches: 149, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
63 1 0.01
64 71 0.48
65 71 0.48
66 6 0.04
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (64 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
Found at i:759824 original size:33 final size:33
Alignment explanation
Indices: 759781--760040 Score: 222
Period size: 33 Copynumber: 7.8 Consensus size: 33
759771 GGGTGAAAGA
*
759781 TGCCATGAAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
*
759814 TGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGAAGTTGTGGAC-TTAAAA-GGAACAAG-G
* ** *
759850 TGCCACGAAGTTGTGGGCTTTCAA--AAGAAGG
1 TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
* * **
759881 TGCCACGGAGTCGTAAACTTAAAAGGAACAAGG
1 TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
* ** * *
759914 TGCCATGGGGTTATGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGAAGTTGTGGAC-TTAAAA-GGAACAAG-G
* ** *
759950 TGCCACGAAGTTGTGGGCTTTGAA--AAGAAGG
1 TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
* *
759981 TGCCACGGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
**
760014 TGCCACGGGGTTGTGGACTTTAAAAGG
1 TGCCACGAAGTTGTGGAC-TTAAAAGG
760041 GAAAAAGAAT
Statistics
Matches: 179, Mismatches: 37, Indels: 21
0.76 0.16 0.09
Matches are distributed among these distances:
31 38 0.21
32 10 0.06
33 57 0.32
34 20 0.11
35 22 0.12
36 32 0.18
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.20
Consensus pattern (33 bp):
TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
Found at i:759885 original size:31 final size:32
Alignment explanation
Indices: 759775--760135 Score: 200
Period size: 36 Copynumber: 10.8 Consensus size: 32
759765 TGAAAAGGGT
* *
759775 GAAAGATGCCATGAAGTTGTGGAC-TTAAAAG
1 GAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
759806 GAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGG
1 G-A-AAGGTGCCACGAAGTTGTGGACTTTAAAA-G
*
759841 GAAAAAGAGTGCCACGAAGTTGTGGGCTTTCAAAA-
1 G--AAAG-GTGCCACGAAGTTGTGGACTTT-AAAAG
* * **
759876 G-AAGGTGCCACGGAGTCGTAAAC-TTAAAAG
1 GAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
* ** *
759906 GAACAAGGTGCCATGGGGTTATGGACTTTAAAAGG
1 G-A-AAGGTGCCACGAAGTTGTGGACTTTAAAA-G
*
759941 GAAAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA-
1 G--AAAG-GTGCCACGAAGTTGTGGACTTT-AAAAG
* *
759976 G-AAGGTGCCACGGAGTCGTGGAC-TTAAAAG
1 GAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
**
760006 GAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
1 G-A-AAGGTGCCACGAAGTTGTGGACTTTAAAA-G
* * * *
760041 GAAAAAGAATTCCACGGAGTTGTGGGCTTTGAAAA-
1 G--AAAG-GTGCCACGAAGTTGTGGACTTT-AAAAG
* ** *
760076 G-AAGGTGCCACGGAGTCATGGACTTTTAAAAAA
1 GAAAGGTGCCACGAAGTTGTGGAC-TTT-AAAAG
* * * *
760109 AAAAGGTGCCACGGAGTCGTAGACTTT
1 GAAAGGTGCCACGAAGTTGTGGACTTT
760136 GATGCCACTG
Statistics
Matches: 265, Mismatches: 37, Indels: 54
0.74 0.10 0.15
Matches are distributed among these distances:
29 8 0.03
30 6 0.02
31 45 0.17
32 17 0.06
33 59 0.22
34 38 0.14
35 18 0.07
36 62 0.23
37 12 0.05
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.20
Consensus pattern (32 bp):
GAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
Found at i:759885 original size:100 final size:100
Alignment explanation
Indices: 759793--760122 Score: 518
Period size: 100 Copynumber: 3.3 Consensus size: 100
759783 CCATGAAGTT
**
759793 GTGGACTTAAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGA
1 GTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGA
*
759858 AGTTGTGGGCTTTCAAAAGAAGGTGCCACGGAGTC
66 AGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
** * *
759893 GTAAACTTAAAAGGAACAAGGTGCCATGGGGTTATGGACTTTAAAAGGGAAAAAGAGTGCCACGA
1 GTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGA
759958 AGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
66 AGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
* * *
759993 GTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAATTCCACGG
1 GTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGA
760058 AGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
66 AGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
* * *
760093 ATGGACTTTTAAAA-AAAAAAGGTGCCACGG
1 GTGGAC--TTAAAAGGAACAAGGTGCCACGG
760123 AGTCGTAGAC
Statistics
Matches: 211, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
100 191 0.91
101 14 0.07
102 6 0.03
ACGTcount: A:0.35, C:0.14, G:0.32, T:0.20
Consensus pattern (100 bp):
GTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGA
AGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
Found at i:760148 original size:23 final size:23
Alignment explanation
Indices: 760115--760160 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
760105 AAAAAAAAGG
760115 TGCCACGGAGTCGTAGACTTTGA
1 TGCCACGGAGTCGTAGACTTTGA
* *
760138 TGCCACTGAGTCGTGGACTTTGA
1 TGCCACGGAGTCGTAGACTTTGA
760161 AAAGAAGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (23 bp):
TGCCACGGAGTCGTAGACTTTGA
Found at i:760205 original size:30 final size:31
Alignment explanation
Indices: 760136--760254 Score: 91
Period size: 31 Copynumber: 3.8 Consensus size: 31
760126 CGTAGACTTT
* *
760136 GATGCCACTGAGTCGTGGACTTTGAAAAGAA
1 GATGCCACTGAATCGTGGACTTTGAAAACAA
* * * *
760167 GGTGCCACTGAATTGTGGACTTTG-AGACCA
1 GATGCCACTGAATCGTGGACTTTGAAAACAA
* *
760197 GATGCCACT-AAGTCATGGACTTT-AAGAAGGAAA
1 GATGCCACTGAA-TCGTGGACTTTGAA-AA--CAA
* *
760230 GATGCCACTGAGTCGTGGGCTTTGA
1 GATGCCACTGAATCGTGGACTTTGA
760255 GAAGAGATTT
Statistics
Matches: 66, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
29 2 0.03
30 21 0.32
31 22 0.33
33 19 0.29
34 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (31 bp):
GATGCCACTGAATCGTGGACTTTGAAAACAA
Found at i:760236 original size:33 final size:33
Alignment explanation
Indices: 760196--760258 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
760186 CTTTGAGACC
760196 AGATGCCACTAAGTCATGGACTTTAAGAAGGAA
1 AGATGCCACTAAGTCATGGACTTTAAGAAGGAA
* * * *
760229 AGATGCCACTGAGTCGTGGGCTTTGAGAAG
1 AGATGCCACTAAGTCATGGACTTTAAGAAG
760259 AGATTTGAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (33 bp):
AGATGCCACTAAGTCATGGACTTTAAGAAGGAA
Found at i:760256 original size:63 final size:61
Alignment explanation
Indices: 760136--760256 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 61
760126 CGTAGACTTT
* * * *
760136 GATGCCACTGAGTCGTGGACTTTGAAAAGAAGGTGCCACTGAATTGTGGACTTTGAGACCA
1 GATGCCACTAAGTCATGGACTTTGAAAAGAAGATGCCACTGAATCGTGGACTTTGAGACCA
* *
760197 GATGCCACTAAGTCATGGACTTT-AAGAAGGAAAGATGCCACTGAGTCGTGGGCTTTGAGA
1 GATGCCACTAAGTCATGGACTTTGAA-AA-G-AAGATGCCACTGAATCGTGGACTTTGAGA
760257 AGAGATTTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
60 2 0.04
61 23 0.45
62 1 0.02
63 25 0.49
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (61 bp):
GATGCCACTAAGTCATGGACTTTGAAAAGAAGATGCCACTGAATCGTGGACTTTGAGACCA
Found at i:760380 original size:8 final size:8
Alignment explanation
Indices: 760357--760402 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
760347 GATGCAAATA
*
760357 ATGATGTT
1 ATGATGTC
*
760365 ATTGATGTT
1 A-TGATGTC
760374 ATGATGTC
1 ATGATGTC
760382 ATGATGTC
1 ATGATGTC
*
760390 ATGATCTC
1 ATGATGTC
760398 ATGAT
1 ATGAT
760403 TACAGCACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
8 27 0.77
9 8 0.23
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (8 bp):
ATGATGTC
Found at i:761220 original size:1 final size:1
Alignment explanation
Indices: 761210--761256 Score: 58
Period size: 1 Copynumber: 47.0 Consensus size: 1
761200 TGAAAAGGGG
* * * *
761210 TTTTTCTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTTATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
761257 GTGAAGATTA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.02, C:0.02, G:0.04, T:0.91
Consensus pattern (1 bp):
T
Found at i:761233 original size:19 final size:19
Alignment explanation
Indices: 761209--761256 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
761199 GTGAAAAGGG
761209 GTTTTTCTTTTT-TTTTTTT
1 GTTTTT-TTTTTGTTTTTTT
761228 GTTTTTTTTTTGTTTTTTT
1 GTTTTTTTTTTGTTTTTTT
*
761247 ATTTTTTTTT
1 GTTTTTTTTT
761257 GTGAAGATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.02, C:0.02, G:0.06, T:0.90
Consensus pattern (19 bp):
GTTTTTTTTTTGTTTTTTT
Found at i:762793 original size:20 final size:21
Alignment explanation
Indices: 762764--762804 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
762754 TGTTTTTGTT
762764 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
762783 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
762805 AAGAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:762954 original size:13 final size:13
Alignment explanation
Indices: 762936--762960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
762926 ATAAACCCCT
762936 TGTATCGATACAC
1 TGTATCGATACAC
762949 TGTATCGATACA
1 TGTATCGATACA
762961 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:767039 original size:16 final size:15
Alignment explanation
Indices: 767013--767045 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
767003 CAATCTTTTG
767013 TTCAAAATTTTCAAT
1 TTCAAAATTTTCAAT
767028 TTCAATAATTTTCAAT
1 TTCAA-AATTTTCAAT
767044 TT
1 TT
767046 ATTATCTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (15 bp):
TTCAAAATTTTCAAT
Found at i:769206 original size:13 final size:13
Alignment explanation
Indices: 769188--769212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
769178 ACATTTGGTC
769188 ATGTATCGATACA
1 ATGTATCGATACA
769201 ATGTATCGATAC
1 ATGTATCGATAC
769213 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:775391 original size:134 final size:134
Alignment explanation
Indices: 775019--775540 Score: 359
Period size: 134 Copynumber: 3.9 Consensus size: 134
775009 CAATTATTTG
* * * * ** * *
775019 CTTTATTTGATAATATAGAAGATTGATGGGGTTAGTTTTGAGTTAGCTTCATCTGGTTATATGGA
1 CTTTATTTGATTATATAAAAGATTGATAGGGTTAGTTTTAAGTTAAATTCATCTGATTATGTGGA
* * *
775084 AGATTGATGGAGTTTTTTCTTTTGTCAACTTCATTTA-G-CAA-AAAGAAGACTAGTGGAGTCAG
66 AGATTGATGGAG-TTTTTCTTTTGTCAACTTCA-TTAGGTTAAGTAA-AAGACTAGTGGAATCAG
*
775146 TTGTCCA
128 TTATCCA
* ** * * * * *
775153 CTTCATTCAATTATCTAAAAGATTGGTAAGGTTAATTTTAAGTTAAATTCAT-TCGATTTTAG-G
1 CTTTATTTGATTATATAAAAGATTGATAGGGTTAGTTTTAAGTTAAATTCATCT-GATTAT-GTG
* ** * * * * * * * *
775216 GAAGATTAATAAAGTTTTTCTTTTATCAAATTCTTTCGGTTAAGTTAAAGTCTTGTGGAATCATT
64 GAAGATTGATGGAGTTTTTCTTTTGTCAACTTCATTAGGTTAAGTAAAAGACTAGTGGAATCAGT
*
775281 TATCTA
129 TATCCA
* * *
775287 TTTTATTTGATTATGTAAAAGATCGATAGGGTTAGTTTTAAGTTAAATTCATCTGATTATGTGGA
1 CTTTATTTGATTATATAAAAGATTGATAGGGTTAGTTTTAAGTTAAATTCATCTGATTATGTGGA
* * * *
775352 AAATTGATGGAGTTTTTCTTTTGTCAGCTTCATTAGGTTAAGTGAAAGACCT-GT-GAAGTTAGT
66 AGATTGATGGAGTTTTTCTTTTGTCAACTTCATTAGGTTAAGTAAAAGA-CTAGTGGAA-TCAGT
775415 TATCCA
129 TATCCA
* * * * ** *
775421 -TTTCATTTAATTATGTAGAAA-ATT-AGTGGGGTTGGTTTT--GTCTCAGCTTCAT-TAGACTA
1 CTTT-ATTTGATTATATA-AAAGATTGA-TAGGGTTAGTTTTAAGT-T-AAATTCATCT-GATTA
* * * * * *
775480 TGTGGAAGGTTGATGGAGTTTTTTTTTTTGTCAACTTCATTCGGTTATGTGAAAGATTAGT
60 TGTGGAAGATTGATGGAG-TTTTTCTTTTGTCAACTTCATTAGGTTAAGTAAAAGACTAGT
775541 TGAGTCAATT
Statistics
Matches: 301, Mismatches: 70, Indels: 33
0.75 0.17 0.08
Matches are distributed among these distances:
132 4 0.01
133 29 0.10
134 226 0.75
135 42 0.14
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (134 bp):
CTTTATTTGATTATATAAAAGATTGATAGGGTTAGTTTTAAGTTAAATTCATCTGATTATGTGGA
AGATTGATGGAGTTTTTCTTTTGTCAACTTCATTAGGTTAAGTAAAAGACTAGTGGAATCAGTTA
TCCA
Found at i:775529 original size:47 final size:48
Alignment explanation
Indices: 775467--775585 Score: 125
Period size: 49 Copynumber: 2.5 Consensus size: 48
775457 TTTGTCTCAG
* * * * *
775467 CTTCATTAGACTATGTGGAAGGTT-GATGGAGT-TTTTTTTTTTGTCAA
1 CTTCATTCGATTATGTGAAAGGTTAG-TGGAGTAATTTTTATTTGTCAA
* * *
775514 CTTCATTCGGTTATGTGAAAGATTAGTTGAGTCAATTTTTATTTGTCAA
1 CTTCATTCGATTATGTGAAAGGTTAGTGGAGT-AATTTTTATTTGTCAA
*
775563 TTTCATTCGATTATGTGAAAGGT
1 CTTCATTCGATTATGTGAAAGGT
775586 CGATAAAGTC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
47 24 0.41
48 1 0.02
49 33 0.57
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.45
Consensus pattern (48 bp):
CTTCATTCGATTATGTGAAAGGTTAGTGGAGTAATTTTTATTTGTCAA
Found at i:775596 original size:49 final size:49
Alignment explanation
Indices: 775500--775601 Score: 116
Period size: 49 Copynumber: 2.1 Consensus size: 49
775490 TGATGGAGTT
* * * **
775500 TTTTTTTTTGTCAACTTCATTCGGTTATGTGAAAGATTAGTTGAGTCAA
1 TTTTTATTTGTCAACTTCATTCGATTATGTGAAAGATGAGTAAAGTCAA
* * *
775549 TTTTTATTTGTCAATTTCATTCGATTATGTGAAAGGTCGA-TAAAGTCAG
1 TTTTTATTTGTCAACTTCATTCGATTATGTGAAAGAT-GAGTAAAGTCAA
775598 TTTT
1 TTTT
775602 CTTTTATTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
49 43 0.98
50 1 0.02
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.47
Consensus pattern (49 bp):
TTTTTATTTGTCAACTTCATTCGATTATGTGAAAGATGAGTAAAGTCAA
Found at i:775733 original size:52 final size:53
Alignment explanation
Indices: 775609--775739 Score: 160
Period size: 53 Copynumber: 2.5 Consensus size: 53
775599 TTTCTTTTAT
* * *
775609 TCTCTTCATTCAGTTATATGGAAGATCAATGGAGCAACGATTTAGTGTCAAGC
1 TCTCTTCATTCAGTTATGTGAAAGATCAATAGAGCAACGATTTAGTGTCAAGC
* * * *
775662 TCTTTTTATTCAGTTATGTGAAAGATCGATAGAGC-AGGTATTTAGT-TCAAG-
1 TCTCTTCATTCAGTTATGTGAAAGATCAATAGAGCAACG-ATTTAGTGTCAAGC
775713 TCCTCTTCATTCAGTTATGTGAAAGAT
1 T-CTCTTCATTCAGTTATGTGAAAGAT
775740 TATTGAAGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
51 1 0.01
52 30 0.45
53 36 0.54
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (53 bp):
TCTCTTCATTCAGTTATGTGAAAGATCAATAGAGCAACGATTTAGTGTCAAGC
Found at i:775972 original size:29 final size:29
Alignment explanation
Indices: 775914--775972 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
775904 AAAGTTAGTA
* *
775914 CTTTCTAATTTTTTCTTATTATGTCCAAT
1 CTTTCTAATTTTTTCATATTAAGTCCAAT
* * *
775943 CTTTTTAATTTTTTCATGTTAAGTCTAAT
1 CTTTCTAATTTTTTCATATTAAGTCCAAT
775972 C
1 C
775973 AAGTTAGTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.05, T:0.58
Consensus pattern (29 bp):
CTTTCTAATTTTTTCATATTAAGTCCAAT
Found at i:781300 original size:29 final size:29
Alignment explanation
Indices: 781258--781316 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
781248 AAATGATAGG
781258 TATTTCGATAAAAGATTGTATGCTTATGC
1 TATTTCGATAAAAGATTGTATGCTTATGC
781287 TATTTCGATAAAAGATTGTATGCTTATGC
1 TATTTCGATAAAAGATTGTATGCTTATGC
781316 T
1 T
781317 TATGGGATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (29 bp):
TATTTCGATAAAAGATTGTATGCTTATGC
Found at i:788103 original size:23 final size:23
Alignment explanation
Indices: 788077--788122 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
788067 GCATTCTCCA
788077 TTAATCCATTCATCATGCAACTC
1 TTAATCCATTCATCATGCAACTC
*
788100 TTAATCCATTCCTCATGCAACTC
1 TTAATCCATTCATCATGCAACTC
788123 AAAATGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.04, T:0.35
Consensus pattern (23 bp):
TTAATCCATTCATCATGCAACTC
Found at i:788219 original size:22 final size:23
Alignment explanation
Indices: 788188--788253 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 23
788178 AAGCTTGTTG
788188 TTTTTGTTGTTGTTCTTTTACTA
1 TTTTTGTTGTTGTTCTTTTACTA
* *
788211 TTTTT-TTGTTGTTTTTGTTGCTA
1 TTTTTGTTGTTGTTCTT-TTACTA
788234 TTTTTGCTTGTTGTTTCTTT
1 TTTTTG-TTGTTG-TTCTTT
788254 GCTATTTCGA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 10 0.28
23 15 0.42
25 7 0.19
26 4 0.11
ACGTcount: A:0.05, C:0.08, G:0.15, T:0.73
Consensus pattern (23 bp):
TTTTTGTTGTTGTTCTTTTACTA
Found at i:788271 original size:23 final size:25
Alignment explanation
Indices: 788216--788272 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 25
788206 TACTATTTTT
* * *
788216 TTGTTGTTTTTGTTGCTATTTTTGC
1 TTGTTGTTTCTGTTGCTATTTTCGA
788241 TTGTTGTTTCT-TTGCTA-TTTCGA
1 TTGTTGTTTCTGTTGCTATTTTCGA
788264 TTGTTGTTT
1 TTGTTGTTT
788273 TCGTTTCCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 13 0.45
24 6 0.21
25 10 0.34
ACGTcount: A:0.05, C:0.09, G:0.19, T:0.67
Consensus pattern (25 bp):
TTGTTGTTTCTGTTGCTATTTTCGA
Found at i:788274 original size:24 final size:26
Alignment explanation
Indices: 788191--788274 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 26
788181 CTTGTTGTTT
* * *
788191 TTGTTGTTGTTCTTTTACTATTTT--T
1 TTGTTGTT-TTCTGTTGCTATTTTCGA
* *
788216 TTGTTGTTTT-TGTTGCTATTTTTGC
1 TTGTTGTTTTCTGTTGCTATTTTCGA
788241 TTGTTG-TTTCT-TTGCTA-TTTCGA
1 TTGTTGTTTTCTGTTGCTATTTTCGA
788264 TTGTTGTTTTC
1 TTGTTGTTTTC
788275 GTTTCCTTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
23 20 0.40
24 15 0.30
25 15 0.30
ACGTcount: A:0.06, C:0.10, G:0.17, T:0.68
Consensus pattern (26 bp):
TTGTTGTTTTCTGTTGCTATTTTCGA
Found at i:792696 original size:20 final size:20
Alignment explanation
Indices: 792636--792696 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
792626 AAATTTTTAA
*
792636 ATTTTATTATTTTTAATTTTT
1 ATTTT-TTATTATTAATTTTT
* * * *
792657 TTCTTTTTCTTCTTATTTTTT
1 AT-TTTTTATTATTAATTTTT
*
792678 ATTTTTTATTATTAGTTTT
1 ATTTTTTATTATTAATTTT
792697 GTTAAATAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 14 0.45
21 14 0.45
22 3 0.10
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (20 bp):
ATTTTTTATTATTAATTTTT
Found at i:793828 original size:42 final size:42
Alignment explanation
Indices: 793268--793830 Score: 278
Period size: 42 Copynumber: 13.5 Consensus size: 42
793258 AGTCTAAGTT
* ** **
793268 AATGGGCAGACAAAGGGTAAAGAAGTCTCCCAAGTCAAAGTT
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * * * * **
793310 GATAGGCAAAGAAAGAGTAAAAAA-TCTCCTGGGTCAAAGTT
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* ** * * *
793351 GATAAGCAAACAAAGGGTAAAGAAGTCTCCCGGGTCAAAGTC
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * *
793393 AATGGGCAAACAAAGGGTAAAAAAGTCT-TCGAGTCAAAGCT
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * * ** *
793434 GACGGGTAGACAAAGGGTAAAGAAGTCT-CCTAGTCAAAACC
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * **** **
793475 GATGGTCAGACAAAGGGTAAAAAAATCTTTTAGGTCAAAATC
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * * *
793517 GATGGCCAGACAAAGGGTAAAAAAGTCTCTCGAGG-CAAAACT
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCG-GGTCAAAGCC
** * *
793559 AATGGGC-GACAAAGCATAAAGAAGTCTCCTGGGTCAAAGCC
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* ** * * ** * * * ** * *
793600 GACAGACAAACAAAAAGTGAAGAAGTCTCTCAAGTCGAAGCT
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * *
793642 GACGGGCAGACAATGGATAAAAAAGTCTCCCGGGTCAAAGCC
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * **
793684 AATAGGTAAACAAAGGGTAAAAAAGTCTCCCGAATCAATATG--
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAA-A-GCC
* * * * * * * *
793726 AACGGGCAGATGACA-GGTAAAGAAGTTTCCTGAGTCAAAGTC
1 AATGGGCAGA-CAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
* * * *
793768 GATGGCCAAACAAGGGGTAAAAAAGTCTCCCGGGTCAAAGCC
1 AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
*
793810 AATGAGCAGACAAAGGGTAAA
1 AATGGGCAGACAAAGGGTAAA
793831 GAGTAGGTTT
Statistics
Matches: 387, Mismatches: 123, Indels: 22
0.73 0.23 0.04
Matches are distributed among these distances:
40 3 0.01
41 127 0.33
42 251 0.65
43 5 0.01
44 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.16
Consensus pattern (42 bp):
AATGGGCAGACAAAGGGTAAAAAAGTCTCCCGGGTCAAAGCC
Found at i:793832 original size:84 final size:84
Alignment explanation
Indices: 793277--793830 Score: 313
Period size: 83 Copynumber: 6.6 Consensus size: 84
793267 TAATGGGCAG
* * *** * * * * *
793277 ACAAAGGGTAAAGAAGTCTCCCAAGTCAAAGTTGATAGGCAAAGAAAGAGTAAAAAA-TCTCCTG
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAAAAAGTTTCCTG
* ** *
793341 GGTCAAAGTTGATAAG-CAA
66 AGTCAAAGCCGAT-GGCCAA
* * * *
793360 ACAAAGGGTAAAGAAGTCTCCCGGGTCAAAGTCAATGGGCAAACAAAGGGTAAAAAAGTCTT-C-
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAAAAAGT-TTCCT
* * ** *
793423 GAGTCAAAGCTGACGGGTAG
65 GAGTCAAAGCCGATGGCCAA
* * * * * *
793443 ACAAAGGGTAAAGAAGTCT-CCTAGTCAAAACCGATGGTCAGACAAAGGGTAAAAAAATCTT--T
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAAAAAGT-TTCCT
* ** *
793505 TAGGTCAAAATCGATGGCCAG
65 GA-GTCAAAGCCGATGGCCAA
* * * * ** * *
793526 ACAAAGGGTAAAAAAGTCTCTCGAGGCAAAACTAATGGGC-GACAAAGCATAAAGAAGTCTCCTG
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAAAAAGTTTCCTG
* ** *
793590 GGTCAAAGCCGACAGACAA
66 AGTCAAAGCCGATGGCCAA
** * * * * * ** * * * * *
793609 ACAAAAAGTGAAGAAGTCTCTCAAGTCGAAGCTGACGGGCAGACAATGGATAAAAAAGTCTCCCG
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAAAAAGTTTCCTG
* * *
793674 GGTCAAAGCCAATAGG-TAA
66 AGTCAAAGCCGAT-GGCCAA
* * * * *
793693 ACAAAGGGTAAAAAAGTCTCCCGAATCAATATG--AACGGGCAGATGACA-GGTAAAGAAGTTTC
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAA-A-GCCAATGGGCAGA-CAAAGGGTAAAAAAGTTTC
*
793755 CTGAGTCAAAGTCGATGGCCAA
63 CTGAGTCAAAGCCGATGGCCAA
* * *
793777 ACAAGGGGTAAAAAAGTCTCCCGGGTCAAAGCCAATGAGCAGACAAAGGGTAAA
1 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAA
793831 GAGTAGGTTT
Statistics
Matches: 360, Mismatches: 94, Indels: 33
0.74 0.19 0.07
Matches are distributed among these distances:
82 38 0.11
83 172 0.48
84 145 0.40
85 4 0.01
86 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.16
Consensus pattern (84 bp):
ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGCCAATGGGCAGACAAAGGGTAAAAAAGTTTCCTG
AGTCAAAGCCGATGGCCAA
Found at i:795108 original size:27 final size:26
Alignment explanation
Indices: 795041--795120 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
795031 TTTGGAGATA
* *
795041 GTAATGGGGTTGGAGTATCCCCTCGAAG
1 GTAACGGGGTTGGAGTAT-CCC-CGATG
795069 GTAACGGGGTTGGAGTATCCCCGATG
1 GTAACGGGGTTGGAGTATCCCCGATG
*
795095 ATTAACGGGGTTGGAGTATCCCCGAT
1 -GTAACGGGGTTGGAGTATCCCCGAT
795121 TGTGAAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 4 0.08
27 27 0.56
28 17 0.35
ACGTcount: A:0.21, C:0.19, G:0.35, T:0.25
Consensus pattern (26 bp):
GTAACGGGGTTGGAGTATCCCCGATG
Found at i:795219 original size:51 final size:52
Alignment explanation
Indices: 795104--795226 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 52
795094 GATTAACGGG
* * * *
795104 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCTGA
1 GTTGGAGTATCCCCGATTATGAAAAATTAGTG-TTTTTGAAAATAAAATCGGA
*
795157 GTTTGAGTATCCCCGATTAT-AGAAAATTAGTG-TTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTTGAAAATAAAATCGGA
* *
795208 GTTGGAATATCCCCAATTA
1 GTTGGAGTATCCCCGATTA
795227 CGGAGAATTG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
51 33 0.54
52 1 0.02
53 27 0.44
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.34
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGAAAATAAAATCGGA
Found at i:797604 original size:34 final size:33
Alignment explanation
Indices: 797565--797631 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
797555 AACTTCCTAG
* *
797565 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCAATACAAAGAA-AAATGTATCGATACA
*
797599 ATGTATCAATACACAGAAAAATGTATCGATACA
1 ATGTATCAATACAAAGAAAAATGTATCGATACA
797632 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 14 0.47
34 16 0.53
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.25
Consensus pattern (33 bp):
ATGTATCAATACAAAGAAAAATGTATCGATACA
Found at i:797673 original size:13 final size:13
Alignment explanation
Indices: 797655--797706 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
797645 AGCTTCCTAG
797655 CGATACATTGTAT
1 CGATACATTGTAT
797668 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
797687 CGATACATTGTAT
1 CGATACATTGTAT
797700 CGATACA
1 CGATACA
797707 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:797687 original size:19 final size:19
Alignment explanation
Indices: 797663--797748 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
797653 AGCGATACAT
797663 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
797682 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
797695 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
797714 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACT-TA
797735 TGTATCGATACAAA
1 TGTATCGATACAAA
797749 TTATTGGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
16 2 0.04
18 1 0.02
19 23 0.43
20 3 0.06
21 13 0.24
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:797696 original size:32 final size:32
Alignment explanation
Indices: 797655--797727 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
797645 AGCTTCCTAG
797655 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
797687 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
797719 CGATACATT
1 CGATACATT
797728 TACTGAATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:797810 original size:21 final size:21
Alignment explanation
Indices: 797784--797881 Score: 162
Period size: 21 Copynumber: 4.7 Consensus size: 21
797774 GTTGGGACCT
*
797784 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCCACAAA
797805 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCCACAAA
*
797826 TGTCTCGATACATTCCACAAA
1 TGTATCGATACATTCCACAAA
797847 TGTATCGATACA-TCCTACAAA
1 TGTATCGATACATTCC-ACAAA
797868 TGTATCGATACATT
1 TGTATCGATACATT
797882 TGGATAAAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
20 3 0.04
21 68 0.94
22 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (21 bp):
TGTATCGATACATTCCACAAA
Found at i:801663 original size:51 final size:51
Alignment explanation
Indices: 801606--801751 Score: 249
Period size: 50 Copynumber: 2.9 Consensus size: 51
801596 TTTTAACTAG
*
801606 ATGTATCGATACATTGAAAAATGTATAGATACATCTGGGTAAAAAGACAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAA
* *
801657 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGT-AAAAGACAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAA
*
801707 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
801752 TGTGACTTTT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 47 0.53
51 42 0.47
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (51 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAA
Found at i:801681 original size:20 final size:20
Alignment explanation
Indices: 801656--801740 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
801646 AAAAAGACAA
801656 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
801676 AATGTATCGATACATCTGGGTAAAAGACAG
1 AATGTATCGATACA--T---T----GA-AG
*
801706 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAG
801726 AATGTATCGATACAT
1 AATGTATCGATACAT
801741 CTAGGTAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
20 30 0.56
21 2 0.04
22 1 0.02
25 2 0.04
28 1 0.02
29 2 0.04
30 16 0.30
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACATTGAAG
Found at i:805375 original size:167 final size:168
Alignment explanation
Indices: 804984--805495 Score: 557
Period size: 168 Copynumber: 3.0 Consensus size: 168
804974 GATCCAAAAA
* * ** * * * * * *
804984 TTTTAAAATTCATTAAATATTATTATTTAATTCATGGTAAATTAGTTTT-CAAAAATTCACTAAT
1 TTTTAAAATTAATAAAATATTATTATTTAATTCACAGTAAATCACTTTTAAAAAAATTAATTTAT
* * ** * * * * * **
805048 CTTCATGAGTTTTTTTATTTTTTTCCTTGAAACTCTCTTATTTTC-AAAATACAAAGTTTTCTGC
66 TTTCATGA-TGTTTGAATTTTATTCTTTAAAATTCTCATATTTTCGAAAA-ACGGAGTTTTCTGC
805112 TCCATAAATATTTTCGAAAGGATTTTTCTTGGTTTCTAAT
129 TCCATAAATATTTTCGAAAGGATTTTTCTTGGTTTCTAAT
* * *
805152 TTTTAAAATTAATCAAATATTATTATTTAATTCACAGTAAATCACTTTTGAAAAAA-TACTTTAT
1 TTTTAAAATTAATAAAATATTATTATTTAATTCACAGTAAATCACTTTTAAAAAAATTAATTTAT
* *
805216 TTTCATGA-GTTTGAATTTT-TTCTTTAAAATTTTCATATTTTCGAAAAACGGTGTTTTCTGCTC
66 TTTCATGATGTTTGAATTTTATTCTTTAAAATTCTCATATTTTCGAAAAACGGAGTTTTCTGCTC
* *
805279 CATAAATATTTTCGAAAGGATTTTTCTTGTTTTTTTTAAT
131 CATAAATATTTTCGAAAGGATTTTTCTTG--GTTTCTAAT
* *
805319 TTTTAAAATTGATAAAATATTATTATTTAATTCACATTAAATCACTTTTAAAAAAATTAATTTAT
1 TTTTAAAATTAATAAAATATTATTATTTAATTCACAGTAAATCACTTTTAAAAAAATTAATTTAT
* * * * * *
805384 TTTCATGATTTTTGAATTTTATTCTTTAAAATTCTCCTATTTTTGAAAAATGGAGTTTTCTACCC
66 TTTCATGATGTTTGAATTTTATTCTTTAAAATTCTCATATTTTCGAAAAACGGAGTTTTCTGCTC
* *** * **
805449 CATAAATGTTTTCAGGGGGGATTTTTCTCGGTTTAAAAT
131 CATAAATATTTTC-GAAAGGATTTTTCTTGGTTTCTAAT
805488 TTTTAAAA
1 TTTTAAAA
805496 GTCATCTAAT
Statistics
Matches: 290, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
165 60 0.21
166 12 0.04
167 59 0.20
168 69 0.24
169 29 0.10
170 49 0.17
171 12 0.04
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (168 bp):
TTTTAAAATTAATAAAATATTATTATTTAATTCACAGTAAATCACTTTTAAAAAAATTAATTTAT
TTTCATGATGTTTGAATTTTATTCTTTAAAATTCTCATATTTTCGAAAAACGGAGTTTTCTGCTC
CATAAATATTTTCGAAAGGATTTTTCTTGGTTTCTAAT
Found at i:807945 original size:157 final size:156
Alignment explanation
Indices: 807560--807962 Score: 370
Period size: 156 Copynumber: 2.6 Consensus size: 156
807550 GGTATACTCG
* * * * * ** *
807560 TAGGGGCATTTTCATAATTTTT-TAGAACCGAGTCTTAGGAGGTCACTAGGTTCACTTTTATGCC
1 TAGGGGCATTTTTATAATTTTTCTAAAATCGAATCCTAGGTTGTCACTAGGTTCACTTTTATGCT
* * * * ** * ** *
807624 AAAGGTGGGCATTTAGGATAGGTTCAGCTCATTTATAATCCTTTTTAAGTCTTTTTATGGGTATT
66 AAAGAT-GGTATTTGGGATAGGTTCAGCCCAGCTATAATCCTTTTCAAGTCTTTGAAGGGGTATT
*
807689 GGGCACTGCTAAGTCAAAGGCATCCCT
130 CGGCACTGCTAAGTCAAAGGCATCCCT
* * * * **
807716 TA-GGGCATTTTTTGTAA-TTTTCCAAAATTG-ATTCTAGGTTGTCAC-AGGTTTTCTTTTATGC
1 TAGGGGCA-TTTTTATAATTTTTCTAAAATCGAATCCTAGGTTGTCACTAGGTTCACTTTTATGC
*
807777 TAAAGGTGATGGTATTTGGGATAGGTTCATCCCAGCTATAATCCTTTTCAAGTCCTTTAGAAGGG
65 TAAA---GATGGTATTTGGGATAGGTTCAGCCCAGCTATAATCCTTTTCAAGT-CTTT-GAAGGG
* * * *
807842 GTA-TCGGCAGTTCTAAGTCAACGGTAT-CCT
125 GTATTCGGCACTGCTAAGTCAAAGGCATCCCT
* *
807872 ATAGGGGCATTTTTATAATTTTTCTAAAATCGAATCCTAAGTTGTCACTAGGTCCACTTTTATGC
1 -TAGGGGCATTTTTATAATTTTTCTAAAATCGAATCCTAGGTTGTCACTAGGTTCACTTTTATGC
*
807937 TGAAGATGGATATTTAGGGATAGGTT
65 TAAAGATGG-TATTT-GGGATAGGTT
807963 TAGTTTTTCC
Statistics
Matches: 194, Mismatches: 39, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
154 17 0.09
155 19 0.10
156 52 0.27
157 40 0.21
158 27 0.14
159 23 0.12
160 16 0.08
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (156 bp):
TAGGGGCATTTTTATAATTTTTCTAAAATCGAATCCTAGGTTGTCACTAGGTTCACTTTTATGCT
AAAGATGGTATTTGGGATAGGTTCAGCCCAGCTATAATCCTTTTCAAGTCTTTGAAGGGGTATTC
GGCACTGCTAAGTCAAAGGCATCCCT
Found at i:809281 original size:10 final size:10
Alignment explanation
Indices: 809255--809287 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
809245 AGAATAGTTA
*
809255 ACTAAGGATG
1 ACTAAGGGTG
809265 ACT-AGGGTG
1 ACTAAGGGTG
809274 ACTAAGGGTG
1 ACTAAGGGTG
809284 ACTA
1 ACTA
809288 GGATAAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (10 bp):
ACTAAGGGTG
Found at i:809655 original size:64 final size:65
Alignment explanation
Indices: 809589--809930 Score: 274
Period size: 66 Copynumber: 5.3 Consensus size: 65
809579 CAATAAAAGG
* * **
809589 GTGACTAGGGTAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAATCGAT-AGGTCAACTAAGG
1 GTGACTAGGATAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAATCGATAAAGTCAACTAAAA
* * * * * *
809653 GTGATTAGGATAAAACTTAAGTCGAAAGAGGGTTGACCAAGGCGAAA-CTAATAAAGTTAACTAA
1 GTGACTAGGATAAAACCTAAGT-TAAAAAGGGTTGACCAAGGCGAAATC-GATAAAGTCAACTAA
809717 AA
64 AA
* * * * * * *
809719 GTGATTAGGATAAAACCTAGGTTAAAATATGGTTGACTACGGCAAAACCGATAAAGTC-A-TAAA
1 GTGACTAGGATAAAACCTAAGTTAAAA-AGGGTTGACCAAGGCGAAATCGATAAAGTCAACTAAA
809782 A
65 A
* * * * * * * *
809783 GTGACTAGGATTAAGCCTATGTCAAAATTA-GGTTGACTAGGGCAAAATTGATAAAGTCAACTAA
1 GTGACTAGGATAAAACCTAAGTTAAAA--AGGGTTGACCAAGGCGAAATCGATAAAGTCAACTAA
809847 AA
64 AA
* * * *
809849 GTGACTAGGATAAAACCTAAGTT-GAATGGGATTGACCAAGGCGAAA-C--T--AGTCGATTAAA
1 GTGACTAGGATAAAACCTAAGTTAAAAAGGG-TTGACCAAGGCGAAATCGATAAAGTCAACTAAA
809908 A
65 A
* *
809909 ATGATTAGGATAAAACCTAAGT
1 GTGACTAGGATAAAACCTAAGT
809931 CGAAATTGAG
Statistics
Matches: 226, Mismatches: 42, Indels: 24
0.77 0.14 0.08
Matches are distributed among these distances:
60 30 0.13
62 1 0.00
64 74 0.33
65 45 0.20
66 75 0.33
67 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (65 bp):
GTGACTAGGATAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAATCGATAAAGTCAACTAAAA
Found at i:809687 original size:65 final size:65
Alignment explanation
Indices: 809585--809897 Score: 208
Period size: 64 Copynumber: 4.8 Consensus size: 65
809575 AAATCAATAA
* * * * *
809585 AAGGGTGACTAGGGTAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAA-TCGAT-AGGTCAAC
1 AAGGGTGATTAGGATAAAACCTAAGTGAAAAAGGGTTGACCAAGGCGAAACT-AATAAAGTCAAC
809648 T
65 T
* * *
809649 AAGGGTGATTAGGATAAAACTTAAGTCGAAAGAGGGTTGACCAAGGCGAAACTAATAAAGTTAAC
1 AAGGGTGATTAGGATAAAACCTAAGT-GAAAAAGGGTTGACCAAGGCGAAACTAATAAAGTCAAC
809714 T
65 T
** * * * * * * **
809715 AAAAGTGATTAGGATAAAACCTAGGTTAAAATATGGTTGACTACGGCAAAACCGATAAAGTC-A-
1 AAGGGTGATTAGGATAAAACCTAAGTGAAAA-AGGGTTGACCAAGGCGAAACTAATAAAGTCAAC
809778 T
65 T
** * * * * * * * * * *
809779 AAAAGTGACTAGGATTAAGCCTATGTCAAAATTA-GGTTGACTAGGGCAAAATTGATAAAGTCAA
1 AAGGGTGATTAGGATAAAACCTAAGTGAAAA--AGGGTTGACCAAGGCGAAACTAATAAAGTCAA
809843 CT
64 CT
** * *
809845 AAAAGTGACTAGGATAAAACCTAAGTTG--AATGGGATTGACCAAGGCGAAACTA
1 AAGGGTGATTAGGATAAAACCTAAG-TGAAAAAGGG-TTGACCAAGGCGAAACTA
809898 GTCGATTAAA
Statistics
Matches: 200, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
64 77 0.38
65 46 0.23
66 76 0.38
67 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (65 bp):
AAGGGTGATTAGGATAAAACCTAAGTGAAAAAGGGTTGACCAAGGCGAAACTAATAAAGTCAACT
Found at i:809736 original size:130 final size:126
Alignment explanation
Indices: 809589--809936 Score: 335
Period size: 130 Copynumber: 2.7 Consensus size: 126
809579 CAATAAAAGG
* **
809589 GTGACTAGGGTAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAATCGATAGGTCAACTAAGGG
1 GTGACTAGGATAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAA-CGATA-GTC-A-TAAAAG
* * *
809654 TGATTAGGATAAAACTTAAGTCGAAA-GAGGGTTGACCAAGGCGAAACTAATAAAGTTAACTAAA
62 TGATTAGGATAAAACCTAAGTCGAAATGA-GGTTGACCAAGGCAAAACTAATAAAGTCAACTAAA
809718 A
126 A
* * * * * *
809719 GTGATTAGGATAAAACCTAGGTTAAAATATGGTTGACTACGGCAAAACCGATAAAGTCATAAAAG
1 GTGACTAGGATAAAACCTAAGTTAAAA-AGGGTTGACCAAGGCGAAA-CGAT--AGTCATAAAAG
* * * * * * * * * *
809784 TGACTAGGATTAAGCCTATGTCAAAATTAGGTTGACTAGGGCAAAATTGATAAAGTCAACTAAAA
62 TGATTAGGATAAAACCTAAGTCGAAATGAGGTTGACCAAGGCAAAACTAATAAAGTCAACTAAAA
* * *
809849 GTGACTAGGATAAAACCTAAGTT-GAATGGGATTGACCAAGGCGAAAC--TAGTCGATTAAAAAT
1 GTGACTAGGATAAAACCTAAGTTAAAAAGGG-TTGACCAAGGCGAAACGATAGTC-A-TAAAAGT
809911 GATTAGGATAAAACCTAAGTCGAAAT
63 GATTAGGATAAAACCTAAGTCGAAAT
809937 TGAGTGACAT
Statistics
Matches: 174, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
124 4 0.02
125 1 0.01
126 28 0.16
128 3 0.02
129 14 0.08
130 99 0.57
131 21 0.12
132 3 0.02
133 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.22
Consensus pattern (126 bp):
GTGACTAGGATAAAACCTAAGTTAAAAAGGGTTGACCAAGGCGAAACGATAGTCATAAAAGTGAT
TAGGATAAAACCTAAGTCGAAATGAGGTTGACCAAGGCAAAACTAATAAAGTCAACTAAAA
Found at i:810439 original size:76 final size:75
Alignment explanation
Indices: 810359--810851 Score: 262
Period size: 76 Copynumber: 6.5 Consensus size: 75
810349 AACATGATTT
*** * *
810359 GAAATATATGGTTTCCACAATTTCCCATCAA-TGGCAAAAAAAATTGATGACAAGTTAAGGAAGA
1 GAAATATATGGTTTCCACAATTT-CCATCAACAACCAAAATAAATTGATAACAAGTTAAGGAA-A
810423 AGAACACAATGG
64 AGAACACAATGG
* * * ** **
810435 GAAATATGTGGTTTCTAAAATTTTTATCAACAACTGAAATAAATTGATAACAAGCTTAAGGAAAA
1 GAAATATATGGTTTCCACAATTTCCATCAACAACCAAAATAAATTGATAACAAG-TTAAGGAAAA
* **
810500 AAACATGATGG
65 GAACACAATGG
* * * * * *
810511 GGAATATATGATTTCTA-AATTTCTCATCAACAACCAAAACAAACTGATAACAACTTAAAGGAAA
1 GAAATATATGGTTTCCACAATTTC-CATCAACAACCAAAATAAATTGATAACAAGTT-AAGGAAA
* * **
810575 TGAGCATGATGG
64 AGAACACAATGG
* * * * * * **
810587 GGAATGTGTGGTTTCCACAATTTCCTTCAACAGCCAAAATAAATTGATGACAA-TTGGGGAAAAA
1 GAAATATATGGTTTCCACAATTTCCATCAACAACCAAAATAAATTGATAACAAGTTAAGG-AAAA
810651 GAACACAATGG
65 GAACACAATGG
* * * * * * * * * * * *
810662 G-AATATGTGATTTCTA-AGATTTCCTTTAATAGCCAAAACAAATTAATGACAAGCTAAAAGAAA
1 GAAATATATGGTTTCCACA-ATTTCCATCAACAACCAAAATAAATTGATAACAAG-TTAAGGAAA
* **
810725 GGAACATGATAGG
64 AGAACACAAT-GG
* * * * * * * * *
810738 GAAA-ATATGGTTTCTACAATTTCCATTAATAGCTAAAACAAACTAATAATAAGTTGAAGGAAAA
1 GAAATATATGGTTTCCACAATTTCCATCAACAACCAAAATAAATTGATAACAAGTT-AAGGAAAA
***
810802 GAACTTGATGAG
65 GAACACAATG-G
* * * *
810814 G-AATATATAGTTTCTACAATTTCCCTCAACAACAAAAA
1 GAAATATATGGTTTCCACAATTTCCATCAACAACCAAAA
810852 CAAACTAATG
Statistics
Matches: 328, Mismatches: 74, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
73 1 0.00
74 44 0.13
75 40 0.12
76 226 0.69
77 17 0.05
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.26
Consensus pattern (75 bp):
GAAATATATGGTTTCCACAATTTCCATCAACAACCAAAATAAATTGATAACAAGTTAAGGAAAAG
AACACAATGG
Found at i:814953 original size:13 final size:13
Alignment explanation
Indices: 814935--814960 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
814925 CAATTTTTTG
814935 TGTATCGATACAT
1 TGTATCGATACAT
814948 TGTATCGATACAT
1 TGTATCGATACAT
814961 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:815045 original size:20 final size:20
Alignment explanation
Indices: 815020--815092 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
815010 CATCCTTTTT
815020 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
815040 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
815061 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
815081 ATGTATCGATAC
1 ATGTATCGATAC
815093 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:815065 original size:21 final size:21
Alignment explanation
Indices: 814999--815075 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
814989 CTGCCAAGAA
*
814999 ATGTATCGATACATCCTTTTT-
1 ATGTATCGATACAT-TTTTTTC
****
815020 ATGTATCGATACA-TTGCAAC
1 ATGTATCGATACATTTTTTTC
815040 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACATTTTTTTC
815061 ATGTATCGATACATT
1 ATGTATCGATACATT
815076 GCAACATGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 13 0.29
21 31 0.69
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATTTTTTTC
Found at i:815065 original size:41 final size:41
Alignment explanation
Indices: 814999--815092 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
814989 CTGCCAAGAA
814999 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
*
815040 ATGTATCGATACAT-TTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTT-ATGTATCGATACATTGCAAC
815081 ATGTATCGATAC
1 ATGTATCGATAC
815093 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
Found at i:815698 original size:48 final size:48
Alignment explanation
Indices: 815643--815786 Score: 288
Period size: 48 Copynumber: 3.0 Consensus size: 48
815633 AAATTTTACG
815643 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
815691 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
815739 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
815787 TTATCTCCCC
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 96 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (48 bp):
AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
Found at i:817645 original size:13 final size:13
Alignment explanation
Indices: 817627--817665 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
817617 ATAATCACCC
*
817627 TGTATCGATACAG
1 TGTATCGATACAA
817640 TGTATCGATACAA
1 TGTATCGATACAA
817653 TGTATCGATACAA
1 TGTATCGATACAA
817666 GGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:819764 original size:15 final size:15
Alignment explanation
Indices: 819744--819774 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
819734 ATTTCGTTTG
*
819744 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
819759 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
819774 G
1 G
819775 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:823854 original size:13 final size:13
Alignment explanation
Indices: 823836--823861 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
823826 CAATTTTTTG
823836 TGTATCGATACAT
1 TGTATCGATACAT
823849 TGTATCGATACAT
1 TGTATCGATACAT
823862 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:823946 original size:20 final size:20
Alignment explanation
Indices: 823921--823993 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
823911 CATCCTTTTT
823921 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
823941 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
823962 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
823982 ATGTATCGATAC
1 ATGTATCGATAC
823994 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:823966 original size:21 final size:21
Alignment explanation
Indices: 823900--823976 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
823890 CTGCCAAGAA
*
823900 ATGTATCGATACATCCTTTTT-
1 ATGTATCGATACAT-TTTTTTC
****
823921 ATGTATCGATACA-TTGCAAC
1 ATGTATCGATACATTTTTTTC
823941 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACATTTTTTTC
823962 ATGTATCGATACATT
1 ATGTATCGATACATT
823977 GCAACATGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 13 0.29
21 31 0.69
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATTTTTTTC
Found at i:823966 original size:41 final size:41
Alignment explanation
Indices: 823900--823993 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
823890 CTGCCAAGAA
823900 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
*
823941 ATGTATCGATACAT-TTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTT-ATGTATCGATACATTGCAAC
823982 ATGTATCGATAC
1 ATGTATCGATAC
823994 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
Found at i:824695 original size:20 final size:19
Alignment explanation
Indices: 824665--824718 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
824655 AGAAAAACAT
*
824665 AATGCATCGATACATTCATA
1 AATGTATCGATACATTCA-A
* *
824685 CATGTATCGATACATTGAA
1 AATGTATCGATACATTCAA
*
824704 AATGTATCGCTACAT
1 AATGTATCGATACAT
824719 CTGGGCAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (19 bp):
AATGTATCGATACATTCAA
Found at i:825840 original size:58 final size:57
Alignment explanation
Indices: 825616--826000 Score: 429
Period size: 58 Copynumber: 6.7 Consensus size: 57
825606 TCGACTTCTA
* * * * ** *
825616 TGGGCTTTG-AAAGGATGCCATTGACTTATGGGCTTTGAAAAAATACCACTGACTTG
1 TGGGCTTTGAAAAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTG
* * * * * *
825672 TGGGCTTTGAGAATG-TGCTACTGACTTGTGGGCTTTAAAAAGG-TGCCACTGACTTA
1 TGGGCTTTGAAAAGGTTGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACTTG
* * *
825728 TGGGCTTTGAAAAGG-TGCTACTAACTTGTGGGGCTCTGAAAGAATGCCACTGACTTG
1 TGGGCTTTGAAAAGGTTGCCACTAACTTGT-GGGCTTTGAAAGGATGCCACTGACTTG
* *
825785 TGGGCTTTGAAAATGGTTGCTACTAACTTATGGGCTTTGAAAGGATGCCACTGACTTG
1 TGGGCTTTGAAAA-GGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTG
* * * *
825843 TGGGCTTTGAAAAGGGTTGCCATTCACTTATGGGCTTTGAAAGGATGCCACTTACTTG
1 TGGGCTTTGAAAA-GGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTG
* * * *
825901 TGGGCTTTGAAAAAGGTTACCGCTGACTTGTGGGCTTTGAAAAGGGTTGCCACTGACTTG
1 TGGGCTTTG-AAAAGGTTGCCACTAACTTGTGGGCTTTG-AAA-GGATGCCACTGACTTG
*
825961 TGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAA
1 TGGGCTTTGAAAAGGTTGCCACTAACTTGTGGGCTTTGAAA
826001 AAAGGTTGTA
Statistics
Matches: 284, Mismatches: 36, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
56 68 0.24
57 40 0.14
58 129 0.45
59 24 0.08
60 23 0.08
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (57 bp):
TGGGCTTTGAAAAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTG
Found at i:825916 original size:88 final size:87
Alignment explanation
Indices: 825616--826002 Score: 432
Period size: 88 Copynumber: 4.5 Consensus size: 87
825606 TCGACTTCTA
* *
825616 TGGGCTTTGAAAGGATGCCATTGACTTATGGGCTTTGAAAAA--ATACCACTGACTTGTGGGCTT
1 TGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAAGGATACCACTGACTTGTGGGCTT
* * *
825679 TGAGAATG-TGCTACTGACTTG
66 TGAAAAGGTTGCCACTGACTTG
* * * * *
825700 TGGGCTTTAAAAAGG-TGCCACTGACTTATGGGCTTTG-AAAAGG-TGCTACTAACTTGTGGGGC
1 TGGGCTTT-GAAAGGATGCCACTAACTTATGGGCTTTGAAAAAGGATACCACTGACTTGT-GGGC
* **
825762 TCTG-AAAGAATGCCACTGACTTG
64 TTTGAAAAGGTTGCCACTGACTTG
* * *
825785 TGGGCTTTGAAAATGGTTGCTACTAACTTATGGGCTTTG--AAAGGATGCCACTGACTTGTGGGC
1 TGGGCTTTG-AAA-GGATGCCACTAACTTATGGGCTTTGAAAAAGGATACCACTGACTTGTGGGC
* * *
825848 TTTGAAAAGGGTTGCCATTCACTTA
64 TTTGAAAA-GGTTGCCACTGACTTG
* * * *
825873 TGGGCTTTGAAAGGATGCCACTTACTTGTGGGCTTTGAAAAAGGTTACCGCTGACTTGTGGGCTT
1 TGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAAGGATACCACTGACTTGTGGGCTT
825938 TGAAAAGGGTTGCCACTGACTTG
66 TGAAAA-GGTTGCCACTGACTTG
* *
825961 TGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAA
1 TGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAA
826003 AGGTTGTATT
Statistics
Matches: 257, Mismatches: 33, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
83 4 0.02
84 42 0.16
85 35 0.14
86 35 0.14
87 38 0.15
88 103 0.40
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (87 bp):
TGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAAGGATACCACTGACTTGTGGGCTT
TGAAAAGGTTGCCACTGACTTG
Found at i:826001 original size:28 final size:28
Alignment explanation
Indices: 825616--826001 Score: 389
Period size: 28 Copynumber: 13.5 Consensus size: 28
825606 TCGACTTCTA
* * *
825616 TGGGCTTTGAAAGGATGCCATTGACTTA
1 TGGGCTTTGAAAAGATGCCACTGACTTG
* *
825644 TGGGCTTTGAAAAAATACCACTGACTTG
1 TGGGCTTTGAAAAGATGCCACTGACTTG
* *
825672 TGGGCTTTGAGAATG-TGCTACTGACTTG
1 TGGGCTTTGA-AAAGATGCCACTGACTTG
* * *
825700 TGGGCTTTAAAAAGGTGCCACTGACTTA
1 TGGGCTTTGAAAAGATGCCACTGACTTG
* * *
825728 TGGGCTTTGAAAAGGTGCTACTAACTTG
1 TGGGCTTTGAAAAGATGCCACTGACTTG
*
825756 TGGGGCTCTG-AAAGAATGCCACTGACTTG
1 T-GGGCTTTGAAAAG-ATGCCACTGACTTG
* * * *
825785 TGGGCTTTGAAAATGGTTGCTACTAACTTA
1 TGGGCTTTGAAAA--GATGCCACTGACTTG
*
825815 TGGGCTTTGAAAGGATGCCACTGACTTG
1 TGGGCTTTGAAAAGATGCCACTGACTTG
* * * *
825843 TGGGCTTTGAAAAGGGTTGCCATTCACTTA
1 TGGGCTTTGAAAA--GATGCCACTGACTTG
* *
825873 TGGGCTTTGAAAGGATGCCACTTACTTG
1 TGGGCTTTGAAAAGATGCCACTGACTTG
* * *
825901 TGGGCTTTGAAAAAGGTTACCGCTGACTTG
1 TGGGCTTTG-AAAA-GATGCCACTGACTTG
*
825931 TGGGCTTTGAAAAGGGTTGCCACTGACTTG
1 TGGGCTTTGAAAA--GATGCCACTGACTTG
*
825961 TGGGCTTTGAAAAGATGCCACTAACTTG
1 TGGGCTTTGAAAAGATGCCACTGACTTG
825989 TGGGCTTTGAAAA
1 TGGGCTTTGAAAA
826002 AAGGTTGTAT
Statistics
Matches: 296, Mismatches: 50, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
27 3 0.01
28 169 0.57
29 31 0.10
30 92 0.31
31 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (28 bp):
TGGGCTTTGAAAAGATGCCACTGACTTG
Found at i:826030 original size:14 final size:14
Alignment explanation
Indices: 826011--826098 Score: 67
Period size: 14 Copynumber: 6.6 Consensus size: 14
826001 AAAGGTTGTA
826011 TTGACAAAAATTTC
1 TTGACAAAAATTTC
*
826025 TTGAC-AAAGTTT-
1 TTGACAAAAATTTC
* *
826037 TTGACGAACA-TTC
1 TTGACAAAAATTTC
*
826050 TTGAC-AAAAGTTC
1 TTGACAAAAATTTC
* *
826063 TTGACGATAATTTC
1 TTGACAAAAATTTC
* **
826077 TTGATAACCATTTC
1 TTGACAAAAATTTC
826091 TTGACAAA
1 TTGACAAA
826099 TGGTGAATTG
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
12 10 0.17
13 21 0.36
14 27 0.47
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (14 bp):
TTGACAAAAATTTC
Found at i:826040 original size:26 final size:27
Alignment explanation
Indices: 826011--826080 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 27
826001 AAAGGTTGTA
* *
826011 TTGACAAAAATTTCTTGAC-AAAGTTT
1 TTGACGAAAATTTCTTGACAAAAGTTC
*
826037 TTGACGAACA-TTCTTGACAAAAGTTC
1 TTGACGAAAATTTCTTGACAAAAGTTC
*
826063 TTGACGATAATTTCTTGA
1 TTGACGAAAATTTCTTGA
826081 TAACCATTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.22
26 22 0.59
27 7 0.19
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (27 bp):
TTGACGAAAATTTCTTGACAAAAGTTC
Found at i:826063 original size:13 final size:14
Alignment explanation
Indices: 826011--826067 Score: 50
Period size: 13 Copynumber: 4.4 Consensus size: 14
826001 AAAGGTTGTA
*
826011 TTGACAAAAATTTC
1 TTGACAAAAAGTTC
*
826025 TTGAC--AAAGTTT
1 TTGACAAAAAGTTC
* *
826037 TTGACGAACA-TTC
1 TTGACAAAAAGTTC
826050 TTGAC-AAAAGTTC
1 TTGACAAAAAGTTC
826063 TTGAC
1 TTGAC
826068 GATAATTTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 13 0.37
13 15 0.43
14 7 0.20
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (14 bp):
TTGACAAAAAGTTC
Found at i:828889 original size:32 final size:32
Alignment explanation
Indices: 828853--828917 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
828843 TTGGCATCAC
828853 AAGTTTGCCATTCCCCTTTTAATTGGTAGATG
1 AAGTTTGCCATTCCCCTTTTAATTGGTAGATG
*
828885 AAGTTTGCCATTCCCTTTTTAATTGGTAGATG
1 AAGTTTGCCATTCCCCTTTTAATTGGTAGATG
828917 A
1 A
828918 CTATGGCCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (32 bp):
AAGTTTGCCATTCCCCTTTTAATTGGTAGATG
Found at i:831350 original size:21 final size:21
Alignment explanation
Indices: 831322--831368 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
831312 TATTAATAAA
*
831322 TAAT-TTATATTT-TAAAATTT
1 TAATATTAT-TTTATAAAATAT
*
831342 TAATATTATTTTATATAATAT
1 TAATATTATTTTATAAAATAT
831363 TAATAT
1 TAATAT
831369 GACTTTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATATTATTTTATAAAATAT
Found at i:831690 original size:2 final size:2
Alignment explanation
Indices: 831639--831671 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
831629 CAGTGTCCAA
831639 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
831672 AGGTTGCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:841288 original size:20 final size:20
Alignment explanation
Indices: 841263--841385 Score: 102
Period size: 20 Copynumber: 5.7 Consensus size: 20
841253 AATTAACTAG
841263 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
841283 ATGTATCGATGCATCTAAGTAAAAAAAGA
1 ATGTATCGATACAT-T--G-----AAA-A
*
841312 ATGTATCAATACATTGAAAA
1 ATGTATCGATACATTGAAAA
* * * * *
841332 TTGTATTGATACATTCATAC
1 ATGTATCGATACATTGAAAA
841352 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
841372 ATGTATCGATACAT
1 ATGTATCGATACAT
841386 CTGGGTAAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 18
0.71 0.12 0.16
Matches are distributed among these distances:
20 57 0.71
21 4 0.05
23 1 0.01
26 1 0.01
28 4 0.05
29 13 0.16
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:842102 original size:61 final size:60
Alignment explanation
Indices: 841995--842162 Score: 185
Period size: 61 Copynumber: 2.8 Consensus size: 60
841985 TGAAATGGAG
* * * * * * * * *
841995 ACTCAATGAAATGGCTTGGACATAACCAGAAACGTAAACAATGACTTGGGTGAAACTAAG
1 ACTCAATGAAACGGCCTCGATAAAACCAGAAACCTAAACAATGACTTGGGCGAAACCAAA
* * *
842055 GCTTAATGAAAACGGCTTCGATAAAACCA-AAATCCTAAACAATGACTTGGGCGAAACCAAA
1 ACTCAATG-AAACGGCCTCGATAAAACCAGAAA-CCTAAACAATGACTTGGGCGAAACCAAA
* *
842116 ACTCAATGAAATGGCCTGGATAAAACCAGAAACCTAAACAATGACTT
1 ACTCAATGAAACGGCCTCGATAAAACCAGAAACCTAAACAATGACTT
842163 AAGCCGAACT
Statistics
Matches: 90, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
60 41 0.46
61 49 0.54
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (60 bp):
ACTCAATGAAACGGCCTCGATAAAACCAGAAACCTAAACAATGACTTGGGCGAAACCAAA
Found at i:842897 original size:13 final size:13
Alignment explanation
Indices: 842879--842904 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
842869 TACAGCAAGT
842879 ATGTATCGATACA
1 ATGTATCGATACA
842892 ATGTATCGATACA
1 ATGTATCGATACA
842905 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:845152 original size:21 final size:21
Alignment explanation
Indices: 845119--845163 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
845109 TTGCAAGTTG
*
845119 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
845141 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
845161 AAA
1 AAA
845164 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:849075 original size:20 final size:20
Alignment explanation
Indices: 848996--849075 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
848986 AATGTCCAAA
*
848996 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
849016 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
849041 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
849061 TTGTATCGATACATT
1 ATGTATCGATACATT
849076 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:849079 original size:13 final size:13
Alignment explanation
Indices: 849061--849099 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
849051 ACATTTTTCT
849061 TTGTATCGATACA
1 TTGTATCGATACA
849074 TTGTATCGATACA
1 TTGTATCGATACA
* *
849087 CTGTATCAATACA
1 TTGTATCGATACA
849100 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:851647 original size:13 final size:13
Alignment explanation
Indices: 851629--851654 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
851619 TACAGCAAGT
851629 ATGTATCGATACA
1 ATGTATCGATACA
851642 ATGTATCGATACA
1 ATGTATCGATACA
851655 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:852619 original size:44 final size:44
Alignment explanation
Indices: 852571--852863 Score: 162
Period size: 44 Copynumber: 6.7 Consensus size: 44
852561 GTAGATGTGC
*
852571 ATGAAATGACGCAAATGCAAGCATCAATAAAAAAGCAAATGCAT
1 ATGAAATGATGCAAATGCAAGCATCAATAAAAAAGCAAATGCAT
* * * * *
852615 ATGAAATGTTACAAATACCAATGTCATC--TAAAATA-CACATGGC--
1 ATGAAATGATGCAAAT-GCAA-G-CATCAATAAAAAAGCAAAT-GCAT
* ** * * **
852658 GTGAAACAATGCAAATGCAAGCATTAATGAAGTAGCAAATGCAT
1 ATGAAATGATGCAAATGCAAGCATCAATAAAAAAGCAAATGCAT
** *
852702 ATGAAATGATGCAAATGCTAATGTCATC--TAAAATGGAAATATGC--
1 ATGAAATGATGCAAATGC-AA-G-CATCAATAAAAAAGCAA-ATGCAT
* * * *
852746 ATGAAACGATGCAACTGCAAGCATCAATAAAGAGGC-AATGCAT
1 ATGAAATGATGCAAATGCAAGCATCAATAAAAAAGCAAATGCAT
* * ***
852789 GTGAAATGATGCAAATGCTAATGTCATC--T-AAAATGCAAATGTGC
1 ATGAAATGATGCAAATGC-AA-G-CATCAATAAAAAAGCAAATGCAT
*
852833 ATGAAATGATACAAATGCAAGCATCAATAAA
1 ATGAAATGATGCAAATGCAAGCATCAATAAA
852864 GTGGTAAATG
Statistics
Matches: 186, Mismatches: 39, Indels: 48
0.68 0.14 0.18
Matches are distributed among these distances:
40 3 0.02
41 13 0.07
42 13 0.07
43 46 0.25
44 73 0.39
45 21 0.11
46 10 0.05
47 7 0.04
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (44 bp):
ATGAAATGATGCAAATGCAAGCATCAATAAAAAAGCAAATGCAT
Found at i:852701 original size:175 final size:173
Alignment explanation
Indices: 852497--852866 Score: 463
Period size: 175 Copynumber: 2.1 Consensus size: 173
852487 AAAGCGATGT
* * *
852497 AAATGCAAGCATCAATAAAGTGCAATGCATATAAAATGTTGTAAATACTAATGTCATCCAAAGTG
1 AAATGCAAGCATCAATAAAGTGCAATGCATATAAAATGATGCAAATACTAATGTCATCCAAAATG
* * * * *
852562 TAGATGTGCATGAAATGACGCAAATGCAAGCATCAATAAAAAAGCAAATGCATATGAAATGTTAC
66 GAAATATGCATGAAACGACGCAAATGCAAGCATCAATAAAAAAGC-AATGCATATGAAATGATAC
* * *
852627 AAATACCAATGTCATCTAAAATACACATG-GCGTGAAACAATGC
130 AAATACCAATGTCATCTAAAATACAAATGTGCATGAAACAATAC
* * * * *
852670 AAATGCAAGCATTAATGAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCATCTAAAA
1 AAATGCAAGCATCAATAAAGT-GC-AATGCATATAAAATGATGCAAATACTAATGTCATCCAAAA
* * * * * *
852735 TGGAAATATGCATGAAACGATGCAACTGCAAGCATCAATAAAGAGGCAATGCATGTGAAATGATG
64 TGGAAATATGCATGAAACGACGCAAATGCAAGCATCAATAAAAAAGCAATGCATATGAAATGATA
* * * **
852800 CAAATGCTAATGTCATCTAAAATGCAAATGTGCATGAAATGATAC
129 CAAATACCAATGTCATCTAAAATACAAATGTGCATGAAACAATAC
852845 AAATGCAAGCATCAATAAAGTG
1 AAATGCAAGCATCAATAAAGTG
852867 GTAAATGTAT
Statistics
Matches: 165, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
173 19 0.12
174 44 0.27
175 102 0.62
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.23
Consensus pattern (173 bp):
AAATGCAAGCATCAATAAAGTGCAATGCATATAAAATGATGCAAATACTAATGTCATCCAAAATG
GAAATATGCATGAAACGACGCAAATGCAAGCATCAATAAAAAAGCAATGCATATGAAATGATACA
AATACCAATGTCATCTAAAATACAAATGTGCATGAAACAATAC
Found at i:852702 original size:87 final size:88
Alignment explanation
Indices: 852491--852906 Score: 430
Period size: 87 Copynumber: 4.8 Consensus size: 88
852481 GTATATAAAG
* * * * *
852491 CGATGTAAATGCAAGCATCAATAAAGT-GC-AATGCATATAAAATGTTGTAAATACTAATGTCAT
1 CGATGCAAATGCAAGCATCAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCAT
* * ** *
852554 CCAAAGTGTAGATGTGCATGAAA
66 CTAAAATACAAATGTGCATGAAA
* * ** * * * *
852577 TGACGCAAATGCAAGCATCAATAAAAAAGCAAATGCATATGAAATGTTACAAATACCAATGTCAT
1 CGATGCAAATGCAAGCATCAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCAT
* *
852642 CTAAAATACACATG-GCGTGAAA
66 CTAAAATACAAATGTGCATGAAA
* * *
852664 CAATGCAAATGCAAGCATTAATGAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCAT
1 CGATGCAAATGCAAGCATCAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCAT
** *
852729 CTAAAATGGAAATATGCATGAAA
66 CTAAAATACAAATGTGCATGAAA
* *
852752 CGATGCAACTGCAAGCATCAATAAAG-AGGC-AATGCATGTGAAATGATGCAAATGCTAATGTCA
1 CGATGCAAATGCAAGCATCAATAAAGTA-GCAAATGCATATGAAATGATGCAAATGCTAATGTCA
*
852815 TCTAAAATGCAAATGTGCATGAAA
65 TCTAAAATACAAATGTGCATGAAA
* * * * * ** * * *
852839 TGATACAAATGCAAGCATCAATAAAGTGGTAAATGTATCCG-AATGATACAAATGCCAATGGCAT
1 CGATGCAAATGCAAGCATCAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCAT
852903 CTAA
66 CTAA
852907 TCCTAATTTG
Statistics
Matches: 275, Mismatches: 49, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
86 22 0.08
87 176 0.64
88 77 0.28
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (88 bp):
CGATGCAAATGCAAGCATCAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCTAATGTCAT
CTAAAATACAAATGTGCATGAAA
Found at i:853463 original size:112 final size:111
Alignment explanation
Indices: 853196--853463 Score: 338
Period size: 111 Copynumber: 2.4 Consensus size: 111
853186 GAATGAGTGC
* * * * * *
853196 ATCAGGTTGTACAAAATATGAATTTCATTGAAAATGAGATATATTTGATGTTGTCGGCTTAAAAT
1 ATCAGGTTGTATAAAACATGAATTTCTTTGAAAATCAGATAAATTTGATGTTGTCGGCTCAAAAT
* * *
853261 TTTCAAAATTGATAGGTTAAATGCCCATTTTCCCAAGTACGAATGG
66 TCTCAAAATTGATAAGATAAATGCCCATTTTCCCAAGTACGAATGG
* * * **
853307 ATCAAGTTGTATAAAACATGAATTTCTTTGAAAATCAAATAAATTTGATGTTGTTGGCTCAATGT
1 ATCAGGTTGTATAAAACATGAATTTCTTTGAAAATCAGATAAATTTGATGTTGTCGGCTCAAAAT
* ** *
853372 TCTCAAAATTGATAAGATACATGCCCCATTTTCTTAGGTACGAATGG
66 TCTCAAAATTGATAAGATAAATG-CCCATTTTCCCAAGTACGAATGG
* * *
853419 ATCAGGTTGTATAAAACATGATTTTTTTTGAAAATCAGACAAATT
1 ATCAGGTTGTATAAAACATGAATTTCTTTGAAAATCAGATAAATT
853464 CATGTTCTTT
Statistics
Matches: 133, Mismatches: 23, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
111 73 0.55
112 60 0.45
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (111 bp):
ATCAGGTTGTATAAAACATGAATTTCTTTGAAAATCAGATAAATTTGATGTTGTCGGCTCAAAAT
TCTCAAAATTGATAAGATAAATGCCCATTTTCCCAAGTACGAATGG
Found at i:854210 original size:17 final size:17
Alignment explanation
Indices: 854188--854222 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
854178 GTCAAACACC
854188 TTTTTGGAGATATTGAA
1 TTTTTGGAGATATTGAA
854205 TTTTTGGAGATATTGAA
1 TTTTTGGAGATATTGAA
854222 T
1 T
854223 ATGAGACCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.49
Consensus pattern (17 bp):
TTTTTGGAGATATTGAA
Found at i:855253 original size:6 final size:6
Alignment explanation
Indices: 855242--855289 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
855232 ATTAAATTAG
*
855242 AAAATA AAAATAA AAAATA ATAATA ACAAA-A AAAATA AAAA-A AAAATA
1 AAAATA AAAAT-A AAAATA AAAATA A-AAATA AAAATA AAAATA AAAATA
855290 GGCAAGAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
5 8 0.22
6 20 0.56
7 8 0.22
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:861496 original size:153 final size:152
Alignment explanation
Indices: 861288--861729 Score: 455
Period size: 154 Copynumber: 2.9 Consensus size: 152
861278 ATCTCGGTGA
* * *
861288 CTTAAAAGACATGAAAATGATAAGTAAAGGGATGAACCTATCCTAAATGACACCTTTGGCATAAA
1 CTTAAAAGACATGAAAAT-ATTA-TAAAAGGATGAACCTATCCTAAAT-ATACCTTTGGCATAAA
* ** * * * *
861353 AGCAACTTGGTGACTA-TTAGGATTCAGTT-TTAGGAAAAATTACCAATATGCCCATAAGGTATA
63 AGCAACCTGACGACTACCTAGGATTCAGTTATAAGG-AAAACTACCAAAATGCCCATAAGGTATA
* * *
861416 CCTTCGGCATAAAATTG-CCCAG-TAAT
127 CCTTCGACATAAAA--GAACCAGATAAC
*
861442 CTTAAATGACATGAAAATATTATAAAAGGATGAACCTATCCTAAGCATATACCTTTGGCATAAAA
1 CTTAAAAGACATGAAAATATTATAAAAGGATGAACCTATCCTAA--ATATACCTTTGGCATAAAA
* * * *
861507 GCAACCTGACGATTACCTAGGATTCAGTTATAAGGAAAACTATCAAAATGCCCCTAGGGTATACC
64 GCAACCTGACGACTACCTAGGATTCAGTTATAAGGAAAACTACCAAAATGCCCATAAGGTATACC
861572 TTCGACATAAAAGAACCAGATAAC
129 TTCGACATAAAAGAACCAGATAAC
* *
861596 CTTAAAGGACATGAAAATATTATAACAA-GATGAACCTATCCTAAATGTATACCTTTAGCATAAA
1 CTTAAAAGACATGAAAATATTATAA-AAGGATGAACCTATCCTAAA--TATACCTTTGGCATAAA
** * * * * * ** * *
861660 AGTGA-TTGATGACTACCTAAGATTCAATTTTAAGGAAAACTATTAAAATGCCCTTAGGGTATAC
63 AGCAACCTGACGACTACCTAGGATTCAGTTATAAGGAAAACTACCAAAATGCCCATAAGGTATAC
*
861724 TTTCGA
128 CTTCGA
861730 TGTAAAAGTA
Statistics
Matches: 248, Mismatches: 31, Indels: 19
0.83 0.10 0.06
Matches are distributed among these distances:
152 23 0.09
153 90 0.36
154 129 0.52
155 6 0.02
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (152 bp):
CTTAAAAGACATGAAAATATTATAAAAGGATGAACCTATCCTAAATATACCTTTGGCATAAAAGC
AACCTGACGACTACCTAGGATTCAGTTATAAGGAAAACTACCAAAATGCCCATAAGGTATACCTT
CGACATAAAAGAACCAGATAAC
Found at i:862134 original size:20 final size:20
Alignment explanation
Indices: 862111--862183 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
862101 ACAATTCAAA
862111 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
862131 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
862152 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
862172 GTATCGATACAT
1 GTATCGATACAT
862184 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:862155 original size:21 final size:21
Alignment explanation
Indices: 862129--862204 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
862119 ACATGTTGCA
862129 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
862150 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
862170 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
862191 TTGTATCGATACAT
1 ATGTATCGATACAT
862205 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:862162 original size:41 final size:41
Alignment explanation
Indices: 862111--862204 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
862101 ACAATTCAAA
*
862111 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
862152 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
862193 GTATCGATACAT
1 GTATCGATACAT
862205 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:862261 original size:13 final size:13
Alignment explanation
Indices: 862243--862268 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
862233 TACAGCAAGT
862243 ATGTATCGATACA
1 ATGTATCGATACA
862256 ATGTATCGATACA
1 ATGTATCGATACA
862269 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:865316 original size:1 final size:1
Alignment explanation
Indices: 865310--865334 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
865300 CAATTTTATG
865310 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
865335 TTCATAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:866031 original size:13 final size:13
Alignment explanation
Indices: 866013--866037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
866003 TTTTCCAGAT
866013 TGTATCGATACAA
1 TGTATCGATACAA
866026 TGTATCGATACA
1 TGTATCGATACA
866038 TTGCTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:867430 original size:20 final size:20
Alignment explanation
Indices: 867407--867479 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
867397 ACAATTCAAA
867407 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
867427 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
867448 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
867468 GTATCGATACAT
1 GTATCGATACAT
867480 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:867451 original size:21 final size:21
Alignment explanation
Indices: 867425--867500 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
867415 ACATGTTGCA
867425 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
867446 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
867466 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
867487 TTGTATCGATACAT
1 ATGTATCGATACAT
867501 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:867458 original size:41 final size:41
Alignment explanation
Indices: 867407--867500 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
867397 ACAATTCAAA
*
867407 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
867448 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
867489 GTATCGATACAT
1 GTATCGATACAT
867501 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:867557 original size:13 final size:13
Alignment explanation
Indices: 867539--867564 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
867529 TACAGCAAGT
867539 ATGTATCGATACA
1 ATGTATCGATACA
867552 ATGTATCGATACA
1 ATGTATCGATACA
867565 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:874087 original size:20 final size:20
Alignment explanation
Indices: 874062--874143 Score: 71
Period size: 20 Copynumber: 4.2 Consensus size: 20
874052 CATTTGATAG
*
874062 TTGCATCCACATTACGTGCT
1 TTGCATCCACATTACATGCT
* *
874082 TTGCAT-CATCATTTCATAC-
1 TTGCATCCA-CATTACATGCT
* *
874101 CTGCATCCACGTTACATGCT
1 TTGCATCCACATTACATGCT
*
874121 TTGCAT-CATCATTTCATGCT
1 TTGCATCCA-CATTACATGCT
874141 TTG
1 TTG
874144 ACAACTTTCA
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
19 16 0.33
20 32 0.67
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.39
Consensus pattern (20 bp):
TTGCATCCACATTACATGCT
Found at i:874092 original size:39 final size:39
Alignment explanation
Indices: 874049--874137 Score: 133
Period size: 39 Copynumber: 2.3 Consensus size: 39
874039 TTGTTTGCTA
* ** *
874049 CATCATTTGATAGTTGCATCCACATTACGTGCTTTGCAT
1 CATCATTTCATACCTGCATCCACATTACATGCTTTGCAT
*
874088 CATCATTTCATACCTGCATCCACGTTACATGCTTTGCAT
1 CATCATTTCATACCTGCATCCACATTACATGCTTTGCAT
874127 CATCATTTCAT
1 CATCATTTCAT
874138 GCTTTGACAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (39 bp):
CATCATTTCATACCTGCATCCACATTACATGCTTTGCAT
Found at i:874188 original size:19 final size:20
Alignment explanation
Indices: 874164--874210 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
874154 TTCATTCATC
*
874164 ATTTTTTTTAAT-AATTTTG
1 ATTTTTTTGAATCAATTTTG
* *
874183 ATTTTTTTGATTCATTTTTG
1 ATTTTTTTGAATCAATTTTG
874203 ATTTTTTT
1 ATTTTTTT
874211 AATTTCTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.72
Consensus pattern (20 bp):
ATTTTTTTGAATCAATTTTG
Found at i:874234 original size:9 final size:9
Alignment explanation
Indices: 874178--874225 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
874168 TTTTTAATAA
874178 TTTTGATTT
1 TTTTGATTT
874187 TTTTGATTCAT
1 TTTTGATT--T
874198 TTTTGATTT
1 TTTTGATTT
*
874207 TTTT-AATT
1 TTTTGATTT
*
874215 TCTTGATTT
1 TTTTGATTT
874224 TT
1 TT
874226 AATTTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.19
9 17 0.53
11 9 0.28
ACGTcount: A:0.15, C:0.04, G:0.08, T:0.73
Consensus pattern (9 bp):
TTTTGATTT
Found at i:875308 original size:42 final size:42
Alignment explanation
Indices: 875244--875949 Score: 328
Period size: 42 Copynumber: 16.7 Consensus size: 42
875234 AGGGTAAAAA
* * *
875244 AGTCTCTAGGGTCAAAGTCGACAGGTAGACTTTAGATGAGGC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * * * **
875286 AGTCTCCAAGGTCAAAGCCGACAGGTAGAC-TGAG-GGTAGAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATG-AG-GC
* *
875328 AGTCTCCAGGGTCAAAGCTGACAGGCAAACTTTAGATGAGGC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * * * * * * **
875370 AGTCTCTAAGGTCAAAGCCAATAGGAAGAC-TGAG-GGTAGAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATG-AG-GC
* * * * * * *
875412 AGTCTTCAGGATTAAAGCCAACAAGCAGAC-TGAG-GGTA-GC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATG-AGGC
* * * *
875452 AACGTATCCAGGGTCAAAGCTGATAGGTAGACTTTAGATGAGGC
1 -A-GTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * * * **
875496 AATCTCCAGGGTCAAAGTCGACAGGCAGAC-TGAG-GGTAGAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATG-AG-GC
* * *
875538 AGTCTCCAAGATCAAAGCCGACAGGCAGACCTTAGATGAGGC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * * * * * ***
875580 AATCTCCAAGGTCAACGTCGACAGGCAGA-TTGAATGATAAAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTT-TA-GATGAGGC
* * * * * *
875623 AGTCTTCAGGGTCAAAGCCGATAAGTAGACTTTAAATAAGGC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * ** * ** **
875665 AGTCTCTAGGGTCAAAG-CTAGCAAACATACTGAAGAAT-AGAAA
1 AGTCTCCAGGGTCAAAGCCGA-CAGGCAGACTTTAG-ATGAG-GC
* * *
875708 AGTCTCTAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGT
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
** ** * *
875750 AGTCTTTAGGGTCAAAGCCGACAGGCAGACTAAAG-GGTAGAGA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATG-AG-GC
* ** * * *
875793 AGTCTCCAAGGTCAAAGTTGACAAGCAGACTTTAGTTAAGGC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* ** * **
875835 AGTCTCTAGGGTCAAAGTTGACAAGG-AGAC-TTAG-GGTAGAAA
1 AGTCTCCAGGGTCAAAGCCGAC-AGGCAGACTTTAGATG-AG-GC
* * *
875877 AGTCTCTAGGGTCAAAGCGGACAGGCAGACCTTAGATGAGGC
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
*
875919 AGTCTCCAGGGTCAAAGCCGACATGCAGACT
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACT
875950 GAAGGATAGG
Statistics
Matches: 490, Mismatches: 142, Indels: 64
0.70 0.20 0.09
Matches are distributed among these distances:
40 3 0.01
41 29 0.06
42 340 0.69
43 109 0.22
44 9 0.02
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (42 bp):
AGTCTCCAGGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
Found at i:875322 original size:84 final size:84
Alignment explanation
Indices: 875210--875421 Score: 291
Period size: 84 Copynumber: 2.5 Consensus size: 84
875200 AAGGTCCCCG
* * * * * * *
875210 GGTCAAAGCCAACAAGCAGACTTAAGGGTAAAAAAGTCTCTAGGGTCAAAG-TCGACAGGTAGAC
1 GGTCAAAGCCAACAGGAAGAC-TGAGGGTAGAAAAGTCTCCAGGGTCAAAGCT-GACAGGCAAAC
875274 TTTAGATGAGGCAGTCTCCAA
64 TTTAGATGAGGCAGTCTCCAA
* *
875295 GGTCAAAGCCGACAGGTAGACTGAGGGTAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAAACTT
1 GGTCAAAGCCAACAGGAAGACTGAGGGTAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAAACTT
*
875360 TAGATGAGGCAGTCTCTAA
66 TAGATGAGGCAGTCTCCAA
* *
875379 GGTCAAAGCCAATAGGAAGACTGAGGGTAGAAAAGTCTTCAGG
1 GGTCAAAGCCAACAGGAAGACTGAGGGTAGAAAAGTCTCCAGG
875422 ATTAAAGCCA
Statistics
Matches: 113, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
84 94 0.83
85 19 0.17
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (84 bp):
GGTCAAAGCCAACAGGAAGACTGAGGGTAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAAACTT
TAGATGAGGCAGTCTCCAA
Found at i:875374 original size:126 final size:127
Alignment explanation
Indices: 875243--875967 Score: 475
Period size: 126 Copynumber: 5.7 Consensus size: 127
875233 AAGGGTAAAA
* * * *
875243 AAGTCTCTAGGGTCAAAGTCGACAGGTAGACTTTA-GAT-GAGGCAGTCTCCAAGGTCAAAGCCG
1 AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGA-GAAGTCTCCAAGGTCAAAGCCG
* * * *
875306 ACAGGTAGACTGAGGGTAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAAACTTTAGATGAGG
65 ACAAGCAGACTGAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGG
* * * * * * * * * *
875369 CAGTCTCTAAGGTCAAAGCCAATAGGAAGAC-TGAGGGTAGAAAAGTCTTC-AGGATTAAAGCCA
1 AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGAGAAGTCTCCAAGG-TCAAAGCCG
* * * * * *
875432 ACAAGCAGACTGAGGGTAGCAACGTATCCAGGGTCAAAGCTGATAGGTAGACTTTAGATGAGG
65 ACAAGCAGACTGAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGG
* * * * *
875495 CAA-TCTCCAGGGTCAAAGTCGACAGGCAGAC-TGAGGGTAGAAAAGTCTCCAAGATCAAAGCCG
1 -AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGAGAAGTCTCCAAGGTCAAAGCCG
* * ** * * * *
875558 ACAGGCAGACCTTA-GATGAGGCAA-TCTCCAAGGTCAACG-TCGACAGGCAGA-TTGAATGATA
65 ACAAGCAGA-CTGAGGAT-AGAAAAGTCTCCAGGGTCAAAGCT-GACAGGCAGACTT-TA-GATG
**
875619 AAA
125 AGG
* * * ** * * *
875622 AAGTCT-TCAGGGTCAAAGCCGATAAGTAGACTTTA-AATA-AGGCAGTCTCTAGGGTCAAAG-C
1 AAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGA-GAAGTCTCCAAGGTCAAAGCC
* * * * *
875683 TAGCAAACATACTGAAGAATAGAAAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTTTAGATGAG
64 GA-CAAGCAGACTG-AGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAG
875748 G
127 G
* * ** **
875749 TAGTCTTTAGGGTCAAAGCCGACAGGCAGACTAAAGGGTAGAGAAGTCTCCAAGGTCAAAGTTGA
1 AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGAGAAGTCTCCAAGGTCAAAGCCGA
* * ** * * *
875814 CAAGCAGACTTTA-GTTA-AGGCAGTCTCTAGGGTCAAAGTTGACAAGG-AGAC-TTAG-GGTAG
66 CAAGCAGAC-TGAGGATAGA-AAAGTCTCCAGGGTCAAAGCTGAC-AGGCAGACTTTAGATG-AG
*
875874 AA
127 -G
* * * * *
875876 AAGTCTCTAGGGTCAAAGCGGACAGGCAGACCTTA-GAT-GAGGCAGTCTCCAGGGTCAAAGCCG
1 AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGA-GAAGTCTCCAAGGTCAAAGCCG
* *
875939 ACATGCAGACTGAAGGATAGGAAAGTCTC
65 ACAAGCAGACTG-AGGATAGAAAAGTCTC
875968 TAGTCAAAGC
Statistics
Matches: 451, Mismatches: 115, Indels: 65
0.71 0.18 0.10
Matches are distributed among these distances:
125 12 0.03
126 217 0.48
127 159 0.35
128 57 0.13
129 6 0.01
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (127 bp):
AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTAGGGTAGAGAAGTCTCCAAGGTCAAAGCCGA
CAAGCAGACTGAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGG
Found at i:875678 original size:85 final size:85
Alignment explanation
Indices: 875436--876002 Score: 529
Period size: 85 Copynumber: 6.7 Consensus size: 85
875426 AAGCCAACAA
* * * * * * *
875436 GCAGACTG-AGGGTAGCAACGTATCCAGGGTCAAAGCTGATAGGTAGACTTTAGATGAGGCAATC
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
*
875500 TCCAGGGTCAAAGTCGACAG
66 TCTAGGGTCAAAGTCGACAG
* * * * * *
875520 GCAGACTG-AGGGTAGAAAAGTCTCCAAGATCAAAGCCGACAGGCAGACCTTAGATGAGGCAATC
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
* * *
875584 TCCAAGGTCAACGTCGACAG
66 TCTAGGGTCAAAGTCGACAG
* * * * * * * * * *
875604 GCAGATTGAATGATAAAAAAGTCTTCAGGGTCAAAGCCGATAAGTAGACTTTAAATAAGGCAGTC
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
* *
875669 TCTAGGGTCAAAG-CTAGCAA
66 TCTAGGGTCAAAGTCGA-CAG
* * * * *
875689 ACATACTGAAGAATAGAAAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGTAGTC
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
* *
875754 TTTAGGGTCAAAGCCGACAG
66 TCTAGGGTCAAAGTCGACAG
* * * * * * * *
875774 GCAGACTAAAGGGTAGAGAAGTCTCCAAGGTCAAAGTTGACAAGCAGACTTTAGTTAAGGCAGTC
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
*
875839 TCTAGGGTCAAAGTTGACAAG
66 TCTAGGGTCAAAGTCGAC-AG
* * * * *
875860 G-AGACT-TAGGGTAGAAAAGTCTCTAGGGTCAAAGCGGACAGGCAGACCTTAGATGAGGCAGTC
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
* * *
875923 TCCAGGGTCAAAGCCGACAT
66 TCTAGGGTCAAAGTCGACAG
* * ** * *
875943 GCAGACTGAAGGATAGGAAAGTCTCTA--GTCAAAGCCAACA-ACAGACTTTAAATGAGGCAG
1 GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAG
876003 ACTAAAGGAA
Statistics
Matches: 391, Mismatches: 86, Indels: 14
0.80 0.18 0.03
Matches are distributed among these distances:
82 17 0.04
83 13 0.03
84 149 0.38
85 207 0.53
86 5 0.01
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (85 bp):
GCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGACAGGCAGACTTTAGATGAGGCAGTC
TCTAGGGTCAAAGTCGACAG
Found at i:875680 original size:169 final size:169
Alignment explanation
Indices: 875425--875967 Score: 615
Period size: 169 Copynumber: 3.2 Consensus size: 169
875415 CTTCAGGATT
* * * * * * *
875425 AAAGCCAACAAGCAGACTG-AGGGTAGCAACGTATCCAGGGTCAAAGCTGATAGGTAGACTTTAG
1 AAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGATAAGTAGACTTTAG
* * * * * *
875489 ATGAGGCAATCTCCAGGGTCAAAGTCGACAGGCAGACTGAGGGTAGAAAAGTCTCCAAGATCAAA
66 ATAAGGCAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAGGGTAGAAAAGTCTCTAGGGTCAAA
* *
875554 GCCGACAGGCAGACCTTAGATGAGGCAATCTCCAAGGTC
131 GCCGACAGGCAGACCTTAGATGAGGCAGTCTCCAGGGTC
* * * * * * * *
875593 AACGTCGACAGGCAGATTGAATGATAAAAAAGTCTTCAGGGTCAAAGCCGATAAGTAGACTTTAA
1 AAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGATAAGTAGACTTTAG
* ** * **
875658 ATAAGGCAGTCTCTAGGGTCAAAG-CTAGCAAACATACTGAAGAATAGAAAAGTCTCTAGGGTCA
66 ATAAGGCAGTCTCTAGGGTCAAAGTCGA-CAGGCAGACTG-AGGGTAGAAAAGTCTCTAGGGTCA
* * * **
875722 AAGCTGACAGGCAGACTTTAGATGAGGTAGTCTTTAGGGTC
129 AAGCCGACAGGCAGACCTTAGATGAGGCAGTCTCCAGGGTC
* * * * * * *
875763 AAAGCCGACAGGCAGACTAAAGGGTAGAGAAGTCTCCAAGGTCAAAGTTGACAAGCAGACTTTAG
1 AAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGATAAGTAGACTTTAG
* * *
875828 TTAAGGCAGTCTCTAGGGTCAAAGTTGACAAGG-AGACTTAGGGTAGAAAAGTCTCTAGGGTCAA
66 ATAAGGCAGTCTCTAGGGTCAAAGTCGAC-AGGCAGACTGAGGGTAGAAAAGTCTCTAGGGTCAA
*
875892 AGCGGACAGGCAGACCTTAGATGAGGCAGTCTCCAGGGTC
130 AGCCGACAGGCAGACCTTAGATGAGGCAGTCTCCAGGGTC
* *
875932 AAAGCCGACATGCAGACTGAAGGATAGGAAAGTCTC
1 AAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTC
875968 TAGTCAAAGC
Statistics
Matches: 302, Mismatches: 68, Indels: 9
0.80 0.18 0.02
Matches are distributed among these distances:
168 16 0.05
169 153 0.51
170 131 0.43
171 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (169 bp):
AAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAGGGTCAAAGCTGATAAGTAGACTTTAG
ATAAGGCAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAGGGTAGAAAAGTCTCTAGGGTCAAA
GCCGACAGGCAGACCTTAGATGAGGCAGTCTCCAGGGTC
Found at i:876862 original size:52 final size:52
Alignment explanation
Indices: 876804--876904 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
876794 GTTGGACTCA
* * * *
876804 ATGTATTGATACTATTCATAATATATTGATACATGAACAGTGATGAACAATG
1 ATGTATTGATACTATTCACAATATATCGATACATAAACACTGATGAACAATG
* *
876856 ATGTATTGATACTATTCACAATGTATCGATACATAAATACTGATGAACA
1 ATGTATTGATACTATTCACAATATATCGATACATAAACACTGATGAACA
876905 GTGAAAATGA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.34
Consensus pattern (52 bp):
ATGTATTGATACTATTCACAATATATCGATACATAAACACTGATGAACAATG
Found at i:884091 original size:79 final size:77
Alignment explanation
Indices: 884005--884257 Score: 308
Period size: 79 Copynumber: 3.2 Consensus size: 77
883995 AATAAAATTG
* *
884005 GGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGTGGAAAATTGATGCTT
1 GGGTTGGAGTATCCCCTCGAAAATAACG-GGTTGGAGTATCCTCGATTGT-GAAAATTGATGTTT
**
884070 TAGAAATAAGGCCA
64 TAGAAATAAAACCA
* ** * ** *
884084 GGGTTGGATTATCCCGACGAAAATAACGGGGTTGGAGTATCCTCGATTGTGAGGAATCAATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAAC-GGGTTGGAGTATCCTCGATTGTGA-AAATTGATGTTT
*
884149 TAGAAATAAAACCG
64 TAGAAATAAAACCA
* *
884163 GGGTTGGAGTATCCCTTCGAAAATAACGGGATTGGAGTATCCTCGATTATGAATAATTGATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGG-TTGGAGTATCCTCGATTGTGAA-AATTGATGTTT
*
884228 TGGAAATAAAACCA
64 TAGAAATAAAACCA
*
884242 GGGTTAGAGTATCCCC
1 GGGTTGGAGTATCCCC
884258 GAGATGAAAA
Statistics
Matches: 146, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
78 5 0.03
79 140 0.96
80 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (77 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGTTGGAGTATCCTCGATTGTGAAAATTGATGTTTTA
GAAATAAAACCA
Found at i:886636 original size:20 final size:20
Alignment explanation
Indices: 886611--886667 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
886601 AAAAATGCCT
886611 GAATGTATCGATACATTGCA
1 GAATGTATCGATACATTGCA
*
886631 GAATGTATCGTTACATTGCA
1 GAATGTATCGATACATTGCA
*
886651 AAATGTATCGATACATT
1 GAATGTATCGATACATT
886668 TGGGTAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (20 bp):
GAATGTATCGATACATTGCA
Found at i:891887 original size:52 final size:52
Alignment explanation
Indices: 891805--891933 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
891795 CGAAATATGA
* *
891805 AAATTGGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAGTTCATAGTGTATCGATACATCTGGGC
*
891857 AAATTTGCCTGTATGTATCGATACAGTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAGTTCATAGTGTATCGATACATCTGGGC
*
891909 AAATTTGCCTGCATGTGTCGATACA
1 AAATTTGCCTGCATGTATCGATACA
891934 AAGATCAACG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACAGTTCATAGTGTATCGATACATCTGGGC
Found at i:891947 original size:52 final size:52
Alignment explanation
Indices: 891805--891953 Score: 194
Period size: 52 Copynumber: 2.9 Consensus size: 52
891795 CGAAATATGA
* ** *
891805 AAATTGGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAGATCATAGCGTATCGATACATCTGGGC
* * *
891857 AAATTTGCCTGTATGTATCGATACAGTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAGATCATAGCGTATCGATACATCTGGGC
*
891909 AAATTTGCCTGCATGTGTCGATACAAAGATCA-A-CGTATCGATACA
1 AAATTTGCCTGCATGTATCGATAC--AGATCATAGCGTATCGATACA
891954 ATGTATCGAC
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 82 0.93
53 1 0.01
54 5 0.06
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACAGATCATAGCGTATCGATACATCTGGGC
Found at i:891978 original size:21 final size:21
Alignment explanation
Indices: 891952--892011 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
891942 CGTATCGATA
891952 CAATGTATCGACACATTTGAG
1 CAATGTATCGACACATTTGAG
891973 CAATGTATCGACACATTTGAG
1 CAATGTATCGACACATTTGAG
* *
891994 TAATGTATCGATACATTT
1 CAATGTATCGACACATTT
892012 TCTTGGCAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (21 bp):
CAATGTATCGACACATTTGAG
Found at i:892066 original size:19 final size:19
Alignment explanation
Indices: 892042--892091 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
892032 CGATACATTT
892042 TATCGATACAAAACTTATG
1 TATCGATACAAAACTTATG
*
892061 TATCGATACAACACTTATG
1 TATCGATACAAAACTTATG
892080 TATCGATACAAA
1 TATCGATACAAA
892092 TAGTTGAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (19 bp):
TATCGATACAAAACTTATG
Found at i:893085 original size:49 final size:49
Alignment explanation
Indices: 892947--893481 Score: 611
Period size: 49 Copynumber: 11.1 Consensus size: 49
892937 CTTAGGAATG
* * *
892947 TTAAAGATGAAGGTGCTAATGTGCTGATTCAAGCCCAGCGACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* * *
892996 TTAAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGTGATATTGGAC
1 TT-AAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
893049 TTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
893098 TTAAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TT-AAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
*
893151 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
893200 TT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
893243 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* * *
893292 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* *
893341 TT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* * * * *
893384 TTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
* * * *
893433 TT----A--AAGGTGCCAATGTGCTTATTCAAGGCTAGCAACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
893476 TTAAAG
1 TTAAAG
893482 GTTGCCACCG
Statistics
Matches: 427, Mismatches: 35, Indels: 50
0.83 0.07 0.10
Matches are distributed among these distances:
43 115 0.27
45 3 0.01
47 2 0.00
49 205 0.48
50 14 0.03
52 14 0.03
53 74 0.17
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (49 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC
Done.