genome.fa.s1800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1800
Parameters: 2 7 7 80 10 50 1000
Length:  54668

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1422--1474	20	2.7	20	88	2	72	26	15	15	43	1.85
1424--1506	19	4.6	19	77	18	88	30	14	15	39	1.87
1445--1521	32	2.4	32	100	0	154	35	12	15	36	1.86
1464--1519	13	3.8	13	75	24	58	35	10	16	37	1.83
8539--8572	3	11.3	3	87	0	50	29	38	0	32	1.58
10171--10195	13	1.9	13	100	0	50	32	16	16	36	1.90
10151--10215	33	2.0	33	88	11	98	30	18	15	35	1.92
11870--12484	154	4.0	152	78	6	573	33	9	8	49	1.64
11932--12484	305	1.8	306	82	4	722	33	9	7	49	1.64
12656--12703	13	3.6	13	80	2	51	45	2	0	52	1.12
13870--14054	79	2.3	78	82	5	212	29	17	30	23	1.97
14006--14082	28	2.8	28	83	0	82	23	19	33	23	1.97
14065--14244	52	3.4	52	79	6	211	32	11	26	30	1.92
14159--14287	51	2.5	52	87	3	172	33	14	25	26	1.95
14271--14345	27	2.7	28	87	2	98	21	18	34	25	1.96
14329--14450	51	2.4	51	83	5	147	32	11	23	31	1.90
16723--16748	13	2.0	13	100	0	52	38	15	15	30	1.88
16702--16768	34	2.0	33	88	2	98	46	13	14	25	1.82
16800--16851	19	2.7	19	93	0	95	40	17	11	30	1.85
16887--16963	21	3.7	21	92	3	120	37	18	11	32	1.87
23178--23310	32	4.1	32	95	0	230	36	16	12	35	1.86
23202--23290	13	5.9	13	72	27	70	34	16	13	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28280--28336	19	2.9	19	89	2	87	31	15	17	35	1.92
28381--28433	13	4.5	13	73	26	64	32	13	16	37	1.88
28365--28433	33	2.1	33	91	5	113	30	13	18	37	1.89
37124--37174	20	2.6	20	90	3	77	31	13	17	37	1.89
38856--38913	25	2.3	26	82	8	66	56	1	0	41	1.09
39934--39969	2	18.0	2	100	0	72	50	0	0	50	1.00
39997--40022	2	13.0	2	100	0	52	50	0	0	50	1.00
42323--42362	21	1.9	21	84	0	53	35	20	10	35	1.86
42531--42657	61	2.1	61	96	0	236	32	16	13	37	1.87
44855--44906	27	2.0	26	88	7	79	26	32	15	25	1.95
46664--46953	144	2.0	144	93	0	490	24	19	18	37	1.94

Tables:   1

The End!