genome.fa.s1802.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1802
Parameters: 2 7 7 80 10 50 1000
Length:  35073

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178--440	139	1.9	139	95	0	481	31	24	19	24	1.98
896--1175	49	5.8	49	81	6	331	31	18	25	25	1.98
886--1183	92	3.1	97	87	6	428	31	18	25	24	1.97
1057--1124	22	3.1	22	64	19	52	30	17	27	23	1.97
1187--1584	31	13.7	28	77	13	378	18	15	33	32	1.92
1187--1584	58	6.8	56	83	8	385	18	15	33	32	1.92
1203--1578	89	4.3	88	83	7	448	18	15	33	31	1.93
1179--1578	147	2.7	143	84	8	506	18	16	33	32	1.93
3017--3117	5	20.2	5	72	18	52	0	1	13	83	0.79
3031--3115	1	85.0	1	73	0	62	1	2	10	85	0.73
3028--3117	12	7.3	12	80	11	85	1	2	12	84	0.77
3028--3115	18	5.0	17	82	9	90	1	2	11	85	0.75
3016--3101	25	3.4	25	83	15	106	0	2	12	84	0.71
3031--3113	19	4.3	19	82	11	98	1	2	10	85	0.75
3017--3113	42	2.3	42	85	7	124	1	2	13	83	0.79
16960--17089	52	2.5	52	93	0	224	30	17	16	34	1.93
16960--17109	52	2.9	51	80	9	178	32	17	16	33	1.92
17095--17122	13	2.2	13	100	0	56	39	17	14	28	1.89
17165--17262	19	5.8	18	70	28	81	36	16	12	34	1.86
17160--17260	32	3.1	32	95	1	175	35	16	11	35	1.86
17184--17240	13	3.9	13	76	24	60	33	17	14	35	1.90
17496--17529	10	3.4	10	95	0	59	35	38	2	23	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17380--17659	149	1.9	149	98	0	542	31	26	18	23	1.98
18534--18629	31	3.1	31	83	0	102	32	28	22	16	1.96
18339--18689	180	1.9	178	86	4	490	30	24	23	21	1.99
18718--18785	31	2.2	31	89	0	100	29	32	25	13	1.93
19460--19546	29	3.0	29	94	3	149	33	9	29	27	1.88
25031--25209	64	2.7	67	80	12	196	44	14	21	19	1.86
25289--25457	65	2.6	66	80	2	207	42	20	22	14	1.88
25358--25665	66	4.7	66	73	7	164	40	17	23	19	1.91
29424--29471	10	4.9	10	87	5	71	81	0	18	0	0.70
29426--29463	19	2.1	18	95	5	67	81	0	18	0	0.69

Tables:   1

The End!