Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1804
Parameters: 2 7 7 80 10 50 1000
Length:  12349

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1532--1557
13
2.0
13
100
0
52
30
15
15
38
1.88
1512--1578
33
2.0
33
88
0
98
25
14
16
43
1.86
3932--4317
52
7.3
50
70
12
166
30
24
12
32
1.93
4046--4118
27
2.7
27
87
10
96
21
31
23
23
1.98
4103--4322
52
4.3
51
80
2
224
30
25
10
33
1.90
4337--4408
27
2.6
28
91
2
110
23
33
19
23
1.97
4306--4408
28
3.8
27
82
7
111
23
32
18
26
1.97
6384--6437
20
2.7
20
91
2
81
33
20
11
35
1.88
9874--9899
13
2.0
13
100
0
52
30
15
15
38
1.88
9959--10031
20
3.6
20
81
3
101
31
17
13
36
1.89
9938--10014
21
3.7
21
77
6
86
28
16
11
42
1.84
9938--10031
41
2.3
41
94
3
163
29
18
12
39
1.88
10638--10688
21
2.4
21
100
0
102
25
35
3
35
1.75

Tables:   1

The End!