genome.fa.s1806.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1806
Parameters: 2 7 7 80 10 50 1000
Length:  37698

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864--920	20	2.8	20	97	0	105	24	12	15	47	1.80
947--1001	20	2.8	20	88	5	76	27	14	16	41	1.87
984--1013	13	2.3	13	94	0	51	33	13	13	40	1.83
3325--3548	51	4.4	50	79	6	234	29	25	12	32	1.93
3534--3604	28	2.6	28	86	6	92	26	35	16	21	1.95
3480--3732	109	2.3	108	78	5	240	30	23	14	32	1.94
3701--3815	51	2.3	51	86	6	162	33	30	6	29	1.82
3828--3942	52	2.2	51	81	7	135	24	26	16	33	1.96
5159--5311	51	2.9	51	79	6	157	33	13	14	38	1.85
8128--8185	13	4.9	13	70	23	56	34	17	13	34	1.89
8122--8185	33	2.0	32	93	3	110	32	18	12	35	1.89
10438--10471	17	2.1	16	88	5	50	70	5	0	23	1.09
11012--11060	25	2.0	25	88	8	73	55	8	8	28	1.58
11888--11926	20	2.0	20	84	0	51	25	10	10	53	1.66
12645--12672	14	2.0	14	100	0	56	71	7	0	21	1.09
16183--16237	21	2.5	22	79	2	67	58	1	27	12	1.45
17913--17943	2	15.5	2	100	0	62	48	0	0	51	1.00
19224--19272	23	2.2	22	88	3	71	48	4	0	46	1.20
22165--22203	21	1.9	20	84	5	51	48	0	5	46	1.24
22904--22959	28	2.0	28	82	3	69	44	0	1	53	1.11
30812--30889	18	4.3	19	75	15	67	56	0	0	43	0.99
31267--31314	21	2.3	21	79	17	55	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31364--31398	17	1.9	19	88	11	56	54	2	0	42	1.15
32216--32255	18	2.2	19	95	4	73	42	0	0	57	0.98
33089--33124	18	1.9	19	88	5	56	50	5	0	44	1.25
34177--34290	51	2.2	51	83	7	133	36	10	22	29	1.88
34672--34710	19	2.1	19	95	0	69	51	7	0	41	1.31
34718--34761	23	2.0	23	95	4	81	52	13	2	31	1.53
34670--34813	57	2.7	53	74	18	122	46	10	3	39	1.55
34778--34851	19	3.8	19	77	13	62	54	5	2	37	1.38
34862--34912	20	2.6	19	82	11	68	52	7	1	37	1.42
34862--35015	66	2.3	67	78	12	190	49	11	3	36	1.55
36342--36388	22	2.1	22	84	0	58	10	10	6	72	1.28

Tables:   1

The End!