genome.fa.s1807.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1807
Parameters: 2 7 7 80 10 50 1000
Length:  73562

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5321--5385	21	3.0	22	70	17	64	38	3	47	10	1.54
5311--5420	42	2.6	42	89	0	175	40	2	47	9	1.49
5311--5397	24	3.9	24	72	17	78	42	2	44	10	1.51
5320--5392	21	3.5	20	71	17	58	41	2	45	10	1.54
12243--12303	9	6.1	9	73	17	50	14	40	0	44	1.46
12215--12333	42	2.8	42	85	0	157	10	42	0	45	1.45
14572--14641	32	2.2	32	97	2	133	27	21	24	27	1.99
15479--15550	28	2.6	28	84	6	92	13	19	6	59	1.57
18677--18788	51	2.2	51	85	0	143	32	13	27	26	1.94
18727--18927	78	2.6	78	76	5	199	34	12	24	27	1.92
21879--21969	41	2.2	38	76	16	92	41	12	27	18	1.86
21898--22021	41	3.0	41	79	9	126	41	14	23	20	1.89
22054--22279	89	2.6	90	84	4	300	42	12	26	18	1.86
22054--22309	45	5.8	44	72	14	179	39	12	27	19	1.89
21901--22309	46	9.4	45	71	14	245	39	12	26	21	1.89
22290--23100	60	13.3	61	85	4	1059	26	19	28	25	1.99
22290--23100	183	4.5	179	87	3	1045	26	19	28	25	1.99
22285--23100	243	3.3	243	92	1	1375	26	19	29	25	1.99
23889--23953	13	5.0	13	92	0	112	35	18	15	30	1.92
23889--23953	26	2.5	26	100	0	130	35	18	15	30	1.92
24011--24065	21	2.5	22	91	5	85	34	9	27	29	1.87
24053--24083	10	3.1	10	95	0	53	41	6	29	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24107--24243	53	2.6	53	94	1	238	26	17	18	37	1.93
24302--24342	21	2.0	21	85	9	57	39	9	12	39	1.76
24546--24920	62	6.1	61	89	1	558	27	19	28	24	1.99
24546--24920	122	3.1	123	91	2	596	27	19	28	24	1.99
31023--31242	79	2.8	79	82	2	228	30	16	26	26	1.97
32841--32870	13	2.3	13	100	0	60	40	13	16	30	1.87
34254--34305	24	2.1	25	82	10	63	53	0	34	11	1.37
43199--43333	54	2.5	54	82	1	135	32	17	22	26	1.97
43294--43478	99	1.9	99	79	4	212	28	16	21	33	1.95
43503--43706	54	3.8	52	73	11	151	25	14	24	34	1.94
45485--45533	22	2.2	22	92	0	80	28	24	12	34	1.91
45469--45661	95	2.0	95	87	0	278	29	24	10	36	1.88
45573--45628	22	2.5	22	88	0	85	25	21	10	42	1.85
47723--47782	21	2.9	21	78	14	70	51	1	26	20	1.56
56001--56062	20	3.1	20	83	0	88	32	14	12	40	1.84
69783--69876	1	94.0	1	76	0	71	86	8	1	4	0.75
69782--69874	16	6.0	16	77	7	86	84	9	1	4	0.79
69783--69876	10	8.8	10	80	14	91	86	8	1	4	0.75
71095--71518	28	14.6	28	82	6	429	28	31	17	22	1.97
71095--71578	28	16.5	28	81	8	416	28	31	17	22	1.96
71094--71578	145	3.3	144	80	9	531	28	31	17	23	1.96
71501--71598	31	3.2	31	78	8	85	31	27	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72426--72550	20	5.7	20	71	18	97	32	16	10	41	1.82
73401--73439	20	1.9	21	89	5	62	23	10	10	56	1.63

Tables:   1

The End!