genome.fa.s1808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1808
Parameters: 2 7 7 80 10 50 1000
Length:  79399

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1496--1579	41	2.0	41	90	0	132	33	14	11	40	1.82
1499--1577	21	3.8	20	73	5	68	30	13	12	43	1.82
2471--2505	12	3.0	12	87	8	54	45	0	0	54	0.99
2447--2617	84	2.0	85	90	3	274	46	3	4	46	1.39
5457--5540	26	3.2	26	78	9	98	46	3	8	41	1.51
5470--5549	26	3.0	24	70	22	63	43	5	8	42	1.57
7059--7133	20	3.8	20	85	0	105	33	14	12	40	1.83
21050--21126	19	3.8	20	76	19	72	83	10	2	3	0.88
21050--21128	22	3.8	20	79	18	81	83	10	2	3	0.86
21051--21134	9	8.6	9	72	13	60	83	10	2	3	0.86
21048--21134	29	3.0	28	86	5	102	81	12	2	3	0.91
21050--21134	40	2.1	41	82	10	104	83	10	2	3	0.86
21050--21134	20	4.2	19	80	10	80	83	10	2	3	0.86
22349--22768	28	14.9	28	90	1	615	29	30	17	22	1.96
22349--22768	85	5.0	85	89	2	639	29	30	17	22	1.96
22349--22768	113	3.7	113	90	1	639	29	30	17	22	1.96
22349--22867	28	18.1	30	85	5	268	29	29	16	24	1.97
23677--23751	20	3.8	20	78	0	96	33	10	13	42	1.78
27007--27487	79	6.2	80	80	8	449	33	13	24	28	1.93
27105--27487	153	2.5	155	85	3	531	33	13	24	28	1.93
26994--27487	232	2.1	234	83	5	624	33	13	24	28	1.93
27422--27538	51	2.3	51	87	0	162	35	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27340--27598	130	2.0	130	81	6	301	36	12	21	28	1.90
33831--33979	52	2.9	51	89	4	235	30	17	18	34	1.94
33968--33992	13	1.9	13	100	0	50	36	16	16	32	1.90
34031--34088	20	3.0	20	84	2	73	46	13	10	29	1.77
34394--34628	45	5.3	44	78	6	215	45	10	23	20	1.82
34605--35444	63	13.9	62	80	8	887	30	19	25	23	1.98
34848--35443	116	5.0	117	80	7	561	30	20	25	23	1.99
36666--36745	33	2.5	32	84	8	92	6	12	6	75	1.19
36684--36745	33	1.9	32	90	3	97	4	12	6	75	1.15
43181--43542	133	2.7	131	86	5	471	54	2	2	40	1.29
43516--43545	15	2.0	15	93	0	51	63	0	0	36	0.95
43621--43663	15	2.9	15	82	10	61	44	2	6	46	1.43
47001--47146	50	2.9	51	92	2	249	45	10	16	28	1.80
49817--49918	20	4.6	20	69	23	78	45	12	11	30	1.78
49817--49971	70	2.2	71	86	3	206	44	12	13	29	1.80
51544--51655	32	3.5	31	81	6	127	23	17	29	29	1.97
51600--52390	28	27.7	28	83	5	787	24	17	29	28	1.97
51600--52390	113	6.9	113	83	4	871	24	17	29	28	1.97
64176--64207	11	3.1	11	86	13	50	65	0	0	34	0.93
69162--69316	20	6.7	20	66	26	76	43	10	16	29	1.82
69159--69316	71	2.2	70	90	1	253	43	11	15	29	1.82
69249--69330	20	3.3	24	70	26	73	46	8	17	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70645--71072	94	4.6	94	87	2	560	35	15	5	43	1.71
70645--71072	189	2.3	186	86	3	576	35	15	5	43	1.71
71848--71878	15	2.1	15	93	0	53	38	0	0	61	0.96
71704--72457	126	5.9	128	84	9	954	42	3	2	52	1.30
72237--72262	13	2.0	13	100	0	52	38	0	0	61	0.96
72380--72475	22	4.2	23	64	21	58	45	0	1	53	1.07
72383--72513	68	1.9	69	89	4	203	46	0	0	52	1.05
76422--76603	99	1.8	98	83	5	242	38	8	20	32	1.83
76424--76683	98	2.6	94	79	11	247	36	8	22	32	1.85
78971--79021	20	2.5	21	83	3	68	27	13	15	43	1.85

Tables:   1

The End!