Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1810

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10007
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:2637 original size:28 final size:28

Alignment explanation


    Indices: 2601--2682  Score: 96
    Period size: 28  Copynumber: 2.9  Consensus size: 28

       2591 ATTTTTCACA

                *                       
       2601 ATCGAGGATACTCCAACCTCGTTATTTC
          1 ATCGGGGATACTCCAACCTCGTTATTTC

                              *     *   
       2629 ATCGGGGATACTCCAACCCCGTTACTTC
          1 ATCGGGGATACTCCAACCTCGTTATTTC

                      *                 
       2657 --CGAGGGAACACTCCAACCTCGTTATT
          1 ATCG-GGG-ATACTCCAACCTCGTTATT

       2683 ATCTCCAAAA


Statistics
Matches: 46,  Mismatches: 6, Indels: 4
        0.82            0.11        0.07

Matches are distributed among these distances:
  26    2  0.04
  27    3  0.07
  28   41  0.89

ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27


Consensus pattern (28 bp):   
ATCGGGGATACTCCAACCTCGTTATTTC
Done.