Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1811
Parameters: 2 7 7 80 10 50 1000
Length:  30964

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1391--1426
15
2.3
16
90
4
56
69
2
27
0
1.02
1876--2051
14
12.1
14
68
13
79
81
5
7
6
0.99
1944--2059
59
1.9
59
81
11
139
80
4
6
8
1.02
1876--2046
1
171.0
1
69
0
63
81
4
7
6
0.96
1877--2086
13
15.3
14
71
15
88
80
4
8
6
1.00
2056--2152
7
13.3
7
70
17
56
78
5
13
3
1.04
2960--3216
10
25.4
10
67
21
67
68
1
1
27
1.09
2951--3029
11
7.2
11
77
20
69
72
1
0
26
0.93
2994--3213
37
5.7
37
67
15
92
68
2
1
27
1.11
3154--3213
20
3.0
21
83
11
74
76
1
0
21
0.87
3154--3234
41
2.0
40
83
7
101
72
2
0
24
0.96
3976--4110
50
2.7
50
87
0
189
25
16
15
42
1.87
6451--6523
28
2.5
28
84
6
92
23
23
15
38
1.92
6467--6634
79
2.1
79
82
6
198
28
24
14
32
1.94
6624--6846
79
2.8
79
83
1
286
28
21
13
36
1.92
6492--6766
130
2.1
130
82
1
336
28
22
14
34
1.93
6703--6974
130
2.1
129
79
8
286
26
22
13
36
1.92
6782--6891
51
2.2
51
85
3
141
28
22
13
35
1.92
6832--7020
79
2.4
79
79
2
193
25
25
14
33
1.94
6465--7011
209
2.6
207
79
7
593
26
23
14
35
1.93
8824--9063
28
8.6
28
85
3
265
31
28
17
22
1.96
8824--9023
84
2.4
85
89
4
300
30
28
17
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9015--9073
31
2.0
27
87
12
82
33
27
18
20
1.96
9085--9417
49
6.8
49
89
1
389
23
25
18
32
1.97
9080--9513
98
4.4
98
77
5
385
23
26
17
32
1.96
10157--10212
21
2.7
21
100
0
112
35
14
14
35
1.86
10248--10333
19
4.8
18
73
21
74
36
12
16
34
1.87
10290--10314
13
1.9
13
100
0
50
36
16
16
32
1.90
10269--10341
32
2.3
32
97
0
137
34
12
17
35
1.88
16532--16648
20
5.7
20
73
9
92
34
14
17
34
1.90
17261--17318
19
3.0
20
85
12
84
37
13
17
31
1.89
17301--17327
13
2.1
13
100
0
54
40
14
14
29
1.86
17281--17345
32
2.0
33
88
8
98
41
15
15
27
1.87
18992--19024
16
2.1
16
94
0
57
30
12
12
45
1.78
19000--19070
20
3.5
20
88
3
106
30
16
7
45
1.75
22463--22487
12
2.1
12
100
0
50
76
0
0
24
0.80
22749--22814
27
2.3
28
82
12
73
1
27
0
71
0.95
22752--22812
30
2.0
31
87
12
90
1
26
0
72
0.94
23438--23475
16
2.5
15
84
16
51
18
0
2
78
0.86
24373--24417
2
22.5
2
82
8
56
48
0
2
48
1.13
24352--24422
19
3.7
19
81
3
81
49
2
2
45
1.31
25057--25108
19
2.6
20
82
14
63
53
1
3
40
1.30
25631--25672
20
2.1
20
90
0
66
30
35
9
23
1.87
25712--25736
1
25.0
1
100
0
50
100
0
0
0
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26226--26262
2
18.5
2
100
0
74
48
0
0
51
1.00
27234--27393
80
2.0
80
95
0
284
20
11
13
54
1.70
29798--29870
1
73.0
1
100
0
146
0
100
0
0
0.00

Tables:   1

The End!