genome.fa.s1812.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1812
Parameters: 2 7 7 80 10 50 1000
Length:  104251

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5483--5537	28	2.0	28	85	0	74	21	21	12	43	1.86
8981--9023	21	1.9	24	86	13	65	51	0	2	46	1.13
8996--9073	24	3.1	24	78	14	79	57	0	1	41	1.07
8996--9072	26	3.0	25	76	16	86	57	0	1	41	1.07
9110--9156	22	2.1	22	84	7	60	57	0	0	42	0.98
9256--9304	14	3.6	14	76	15	50	48	2	6	42	1.39
10606--10645	21	2.0	21	90	5	64	45	0	0	55	0.99
10606--10657	22	2.5	21	84	6	61	48	0	0	51	1.00
10647--10684	8	4.9	8	84	15	53	60	0	0	39	0.97
10643--10684	22	1.9	22	85	9	59	61	0	0	38	0.96
10654--10684	14	2.2	14	94	0	53	61	0	0	38	0.96
10883--10953	23	3.1	22	79	20	67	42	0	0	57	0.98
10883--10949	21	3.0	22	82	8	75	41	0	0	58	0.98
11839--11871	17	2.0	17	88	5	50	30	0	3	66	1.06
12548--12592	16	2.8	16	87	9	65	51	0	0	48	1.00
13389--13418	2	15.0	2	100	0	60	50	0	0	50	1.00
13608--13662	17	3.2	17	73	19	51	38	5	1	54	1.34
13723--13765	21	2.1	20	83	12	52	41	6	2	48	1.43
14200--14242	22	1.9	23	85	4	61	37	0	11	51	1.39
15094--15156	26	2.4	27	86	7	85	42	3	3	50	1.34
21013--21042	2	15.0	2	92	0	51	50	3	0	46	1.18
22059--22124	30	2.2	30	91	0	105	54	0	3	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22038--22182	65	2.2	63	80	10	150	54	2	2	40	1.26
22059--22182	30	4.0	30	77	12	97	54	1	3	41	1.26
23040--23064	13	1.9	13	100	0	50	32	0	20	48	1.50
23520--23547	2	14.0	2	100	0	56	50	0	0	50	1.00
24022--24085	18	3.7	17	76	14	60	59	0	0	40	0.97
24029--24100	21	3.4	21	71	5	56	62	0	0	37	0.95
24731--24790	22	2.8	22	82	12	63	41	0	3	55	1.16
24731--24781	22	2.3	23	84	15	65	41	0	1	56	1.10
24730--24790	21	2.7	22	80	14	63	42	0	3	54	1.17
25116--25166	16	3.1	16	81	16	52	52	0	0	47	1.00
25134--25180	16	3.0	16	84	3	51	46	0	0	53	1.00
29097--29121	2	12.5	2	100	0	50	52	0	0	48	1.00
30870--30895	2	13.0	2	100	0	52	50	0	0	50	1.00
38770--38799	15	2.0	15	100	0	60	86	13	0	0	0.57
39816--40475	27	24.1	27	90	2	1023	22	34	14	28	1.93
39816--40490	164	4.1	163	90	3	1032	23	34	14	28	1.93
39816--40475	191	3.4	191	94	1	1090	22	34	14	28	1.93
40458--40964	32	15.8	32	94	1	865	30	33	18	16	1.93
42211--42246	17	2.1	17	89	0	54	83	0	16	0	0.65
45141--45187	2	23.5	2	100	0	94	51	0	0	48	1.00
46380--46459	27	3.0	27	90	0	124	50	21	8	20	1.75
47070--47101	16	2.0	16	100	0	64	25	6	31	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50864--50942	27	2.9	27	90	0	131	46	24	6	22	1.75
51073--51102	14	2.1	14	93	0	51	60	3	0	36	1.14
51339--51383	20	2.2	21	88	4	65	40	0	2	57	1.11
52368--52410	23	1.9	23	85	4	61	51	2	0	46	1.13
53374--53414	21	2.0	21	90	0	64	34	19	24	21	1.97
54952--54976	13	1.9	13	100	0	50	36	16	16	32	1.90
55078--55206	52	2.5	52	93	0	222	35	16	17	30	1.92
58073--58154	27	3.0	27	80	7	103	23	4	21	50	1.68
58907--58932	13	2.0	13	100	0	52	30	15	15	38	1.88
59630--59673	21	2.1	21	83	8	54	25	31	4	38	1.76
61475--61500	13	2.0	13	100	0	52	38	15	15	30	1.88
63580--63610	15	2.1	15	93	0	53	12	22	16	48	1.80
65415--65459	21	2.1	21	88	8	65	22	17	4	55	1.60
67677--67702	13	2.0	13	100	0	52	30	15	15	38	1.88
68400--68443	21	2.1	21	83	8	54	25	31	4	38	1.76
70245--70270	13	2.0	13	100	0	52	38	15	15	30	1.88
71030--71074	16	2.8	17	83	9	60	53	0	0	46	1.00
71021--71069	24	2.0	24	84	0	62	53	0	0	46	1.00
71029--71074	15	3.0	15	82	14	58	54	0	0	45	0.99
71141--71178	19	2.0	20	85	15	53	57	2	7	31	1.41
72512--72556	3	15.0	3	100	0	90	66	0	0	33	0.92
72817--72869	17	3.3	16	74	15	56	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73695--73740	24	1.9	24	86	8	67	45	23	8	21	1.80
73721--73774	28	1.9	28	88	0	81	46	16	11	25	1.80
79311--79352	18	2.3	18	83	0	57	47	11	4	35	1.61
81223--81266	2	22.0	2	100	0	88	50	0	0	50	1.00
83161--83213	3	18.0	3	96	3	99	66	0	0	33	0.92
83489--83534	22	2.1	22	88	8	67	36	0	2	60	1.09
83498--83542	22	2.0	23	82	4	56	46	0	0	53	1.00
84875--84931	2	28.5	2	89	0	78	54	3	0	42	1.17
84875--84931	22	2.6	22	100	0	114	54	3	0	42	1.17
85847--85907	28	2.2	29	88	8	99	60	1	0	37	1.07
85865--85910	19	2.3	20	78	17	51	60	2	0	36	1.09
88544--88612	26	2.7	26	78	12	65	43	0	0	56	0.99
88535--88614	20	3.5	22	73	23	76	43	0	0	56	0.99
88956--89005	16	3.2	15	86	8	64	48	0	0	52	1.00
88967--89015	16	3.1	15	80	13	55	46	0	0	53	1.00
97008--97038	2	15.5	2	100	0	62	0	48	0	51	1.00
97357--97391	11	3.2	11	87	0	52	68	0	0	31	0.90
97366--97400	17	2.0	18	88	5	54	71	0	0	28	0.86
97416--97482	20	3.1	21	79	16	66	56	0	1	41	1.08
97446--97493	22	2.2	22	85	3	62	58	2	0	39	1.10
97803--97846	21	2.0	22	83	12	56	45	9	4	40	1.56
102246--102281	17	2.1	18	89	5	56	72	0	27	0	0.85

Tables:   1

The End!