genome.fa.s1813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1813
Parameters: 2 7 7 80 10 50 1000
Length:  63819

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2546--2586	21	1.9	22	90	5	66	56	2	0	41	1.13
2688--2729	15	2.7	15	79	13	50	47	0	0	52	1.00
2789--2836	15	2.9	16	81	12	62	72	0	0	27	0.84
4023--4069	13	3.8	13	75	16	55	55	2	0	42	1.12
11548--11577	6	5.0	6	100	0	60	33	0	0	66	0.92
12107--12155	19	2.5	19	83	3	71	44	0	0	55	0.99
12103--12166	22	3.0	22	76	17	64	45	0	0	54	0.99
12205--12234	14	2.2	14	94	5	53	83	0	3	13	0.77
14220--14893	337	2.0	337	99	0	1339	43	6	9	41	1.62
17636--17661	6	4.3	6	100	0	52	84	0	15	0	0.62
21412--21793	105	3.6	104	75	9	414	31	12	27	28	1.93
21412--21793	51	7.3	51	71	11	288	31	12	27	28	1.93
21565--21640	27	2.8	28	88	6	102	21	21	34	23	1.97
21369--21901	105	5.0	106	71	12	410	30	13	28	27	1.94
21369--21958	211	2.8	211	93	1	959	31	12	27	28	1.93
21776--21851	27	2.8	28	88	6	102	21	21	34	23	1.97
24316--24341	13	2.0	13	100	0	52	38	15	15	30	1.88
24295--24361	33	2.0	33	88	0	98	43	16	14	25	1.86
24381--24448	19	3.9	18	76	23	83	38	14	11	35	1.83
24403--24427	13	1.9	13	100	0	50	32	16	16	36	1.90
24384--24446	32	2.0	32	96	0	117	36	15	12	34	1.86
24504--24560	21	2.7	21	97	0	105	36	19	10	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25668--25725	21	2.8	21	78	5	64	34	24	1	39	1.65
32820--32864	22	2.0	23	82	4	56	48	15	17	17	1.81
33220--33260	11	3.5	11	81	12	55	78	0	19	2	0.87
40020--40053	17	2.0	17	100	0	68	88	11	0	0	0.52
41074--41131	30	1.9	31	85	3	82	24	25	17	32	1.96
41150--42248	27	41.1	27	93	3	1890	22	35	14	27	1.93
42231--43337	32	35.8	32	87	6	1358	30	32	18	17	1.95
43370--43488	49	2.5	47	80	9	127	19	29	22	28	1.98
44170--44197	1	28.0	1	100	0	56	100	0	0	0	0.00
44186--44230	22	2.0	23	82	4	56	48	15	17	17	1.81
44585--44625	11	3.5	11	81	12	55	78	0	19	2	0.87
45006--45050	2	22.5	2	95	0	81	46	0	2	51	1.13
49357--49397	21	1.9	22	90	5	66	43	17	17	21	1.87
50236--50363	51	2.5	52	84	5	179	29	14	17	38	1.89
50372--50396	13	1.9	13	100	0	50	36	16	16	32	1.90
50479--50542	19	3.7	18	76	23	75	37	17	14	31	1.89
50497--50523	13	2.1	13	100	0	54	40	14	14	29	1.86
50441--50542	32	3.2	32	90	4	154	38	16	13	31	1.88
59409--59759	175	2.0	175	98	0	675	20	23	18	36	1.95

Tables:   1

The End!