Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1816

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5976
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:2979 original size:13 final size:12

Alignment explanation


    Indices: 2961--2993  Score: 50
    Period size: 13  Copynumber: 2.8  Consensus size: 12

       2951 TAATTTATGG

                         
       2961 GAACAAATAAATA
          1 GAACAAATAAA-A

                        
       2974 GAACAAATAAAA
          1 GAACAAATAAAA

                     
       2986 -AACAAATA
          1 GAACAAATA

       2994 GCGGTAGGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  11    8  0.40
  12    1  0.05
  13   11  0.55

ACGTcount: A:0.73, C:0.09, G:0.06, T:0.12


Consensus pattern (12 bp):   
GAACAAATAAAA

Found at i:5037 original size:15 final size:15

Alignment explanation


    Indices: 5017--5050  Score: 68
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       5007 TCCTATTACC

                           
       5017 TATTATTTAATTTAA
          1 TATTATTTAATTTAA

                           
       5032 TATTATTTAATTTAA
          1 TATTATTTAATTTAA

                
       5047 TATT
          1 TATT

       5051 GATATTGTAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (15 bp):   
TATTATTTAATTTAA
Done.