genome.fa.s1817.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1817
Parameters: 2 7 7 80 10 50 1000
Length:  118926

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4641--4671	3	10.3	3	92	0	53	29	35	0	35	1.58
6248--6277	13	2.3	13	94	0	51	30	13	20	36	1.90
6280--6429	75	2.0	76	96	2	275	32	14	18	34	1.91
6397--6452	19	2.8	21	83	10	80	33	17	14	33	1.90
6438--6464	13	2.1	13	100	0	54	40	14	14	29	1.86
9717--9750	18	1.9	17	88	5	50	29	2	5	61	1.34
10495--10528	16	2.1	17	88	5	52	70	11	2	14	1.27
12463--12499	18	2.1	18	89	0	56	32	8	13	45	1.73
13338--13373	18	2.0	18	88	0	54	25	11	2	61	1.43
16998--17081	32	2.5	33	77	17	93	30	26	13	29	1.93
17012--17080	36	1.9	36	88	8	106	27	27	11	33	1.91
17536--17602	24	3.0	22	85	12	77	47	10	22	19	1.79
17568--17603	10	3.6	10	84	0	54	47	11	22	19	1.80
17565--17603	20	2.0	20	100	0	78	48	10	20	20	1.78
19034--19126	46	2.0	46	82	0	114	41	19	21	17	1.90
19087--19253	91	1.8	91	81	2	210	44	19	17	17	1.86
20056--20379	171	1.9	169	87	3	474	30	15	25	28	1.96
21299--21354	10	5.3	11	82	8	55	0	12	3	83	0.76
21309--21354	22	2.2	21	88	7	67	0	8	4	86	0.68
21309--21346	18	2.1	19	90	9	62	0	10	2	86	0.66
22026--22060	8	4.4	8	89	10	54	0	8	0	91	0.42
22018--22056	17	2.3	17	90	0	60	5	10	0	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22026--22057	9	3.7	9	95	4	57	0	9	0	90	0.45
27483--27631	52	2.9	52	90	0	235	31	16	17	34	1.93
27620--27644	13	1.9	13	100	0	50	36	16	16	32	1.90
27683--27740	20	3.0	20	84	2	73	46	13	10	29	1.77
32320--32347	11	2.5	11	100	0	56	0	21	0	78	0.75
32314--32348	13	2.7	13	86	0	52	0	20	0	80	0.72
32663--32691	5	5.8	5	100	0	58	79	0	0	20	0.74
32663--32713	20	2.5	20	81	6	59	74	1	1	21	1.02
34390--34457	19	3.9	19	78	21	85	35	11	14	38	1.83
34411--34435	13	1.9	13	100	0	50	36	16	16	32	1.90
34392--34454	32	2.0	32	96	0	117	34	12	15	36	1.86
36990--37061	28	2.6	28	88	4	101	23	33	18	25	1.97
37013--37248	78	3.0	78	74	5	224	26	27	14	30	1.95
38837--38908	27	2.7	27	75	0	81	26	16	33	23	1.96
41281--41451	51	3.3	53	83	5	174	42	12	15	28	1.84
44346--44370	3	8.3	3	100	0	50	32	0	0	68	0.90
45710--45766	21	2.8	20	84	10	62	5	17	1	75	1.07
45710--45766	10	5.5	11	76	17	50	5	17	1	75	1.07
46073--46542	168	2.8	167	86	4	610	51	7	10	29	1.65
46093--46699	168	3.7	158	82	7	487	49	8	11	30	1.67
48150--48243	44	2.1	45	88	3	138	43	14	24	17	1.86
48201--48873	85	8.0	85	79	5	596	34	12	31	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48201--48869	256	2.7	247	81	5	745	33	13	31	21	1.91
48596--48751	78	2.0	78	86	2	215	32	9	33	23	1.87
48674--48903	85	2.7	85	79	1	255	32	12	31	23	1.92
48872--48957	41	2.0	43	84	4	113	39	12	27	19	1.88
49413--49533	58	2.1	58	90	3	190	23	19	21	36	1.95
49753--49810	14	4.2	14	79	16	68	12	0	5	82	0.82
49750--49839	9	9.7	9	75	15	85	11	1	5	82	0.89
49750--49845	39	2.4	39	81	10	106	10	2	5	82	0.91
49752--49847	50	2.0	48	82	12	115	10	2	5	82	0.91
49750--49819	13	5.3	13	74	17	56	11	1	4	82	0.86
49750--49820	14	5.3	13	76	21	67	11	1	4	83	0.86
49748--49846	36	2.6	39	75	14	107	10	2	7	80	0.97
49751--49839	10	8.7	10	78	8	90	11	1	5	82	0.89
56287--56351	20	3.0	21	84	13	80	32	13	12	41	1.82
56301--56351	20	2.5	20	93	0	84	33	11	13	41	1.81
56290--56428	71	2.0	71	89	0	215	28	15	12	42	1.84
56374--56448	20	3.7	21	80	7	75	30	14	14	40	1.86
56301--56496	91	2.2	91	85	3	261	30	15	13	40	1.86
62600--62666	20	3.7	19	74	25	74	34	13	14	37	1.86
62614--62668	13	4.7	13	70	25	59	34	12	16	36	1.87
62603--62667	33	2.0	33	93	6	114	35	13	13	36	1.85
66564--66637	20	3.7	19	82	8	94	33	13	18	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67705--67953	49	4.9	52	75	7	174	33	16	24	24	1.96
67814--67983	49	3.6	46	80	9	193	31	18	24	25	1.97
67705--67990	104	2.9	98	83	9	318	32	17	25	25	1.97
67711--67990	98	2.9	96	82	10	266	32	17	25	25	1.97
67814--68003	49	4.0	46	77	11	140	32	17	25	24	1.97
67999--68308	32	9.7	31	81	7	345	20	18	30	30	1.96
67999--68308	95	3.2	96	85	3	421	20	18	30	30	1.96
67999--68308	127	2.4	127	84	3	401	20	18	30	30	1.96
68491--68555	28	2.4	28	81	2	69	24	23	24	27	2.00
69869--69929	1	61.0	1	73	0	50	0	0	13	86	0.56
69869--69929	8	7.5	8	83	8	79	0	0	13	86	0.56
69873--69921	4	12.8	4	86	4	66	0	0	16	83	0.64
69877--69929	26	2.1	24	89	6	79	0	0	13	86	0.56
83804--83899	20	4.8	20	80	10	115	34	15	15	34	1.90
85167--85208	22	2.0	21	86	13	59	45	14	7	33	1.72
87041--87083	20	2.1	20	86	4	59	9	30	44	16	1.79
87525--87563	13	3.0	13	92	0	60	35	12	17	33	1.88
89633--89663	15	2.1	15	93	0	53	12	22	16	48	1.80
93943--93982	22	1.9	21	85	10	55	45	15	5	35	1.68
94331--94385	20	2.7	20	83	8	67	32	18	14	34	1.91
96667--96731	32	2.0	32	84	3	85	41	10	13	33	1.80
102040--102135	36	2.6	37	88	1	140	34	7	14	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102393--102426	13	2.5	14	85	9	52	64	0	0	35	0.94
103357--103425	29	2.4	30	76	11	72	62	2	0	34	1.10
103334--103413	22	3.8	21	71	19	60	65	1	0	33	1.01
104199--104237	2	20.5	2	89	10	64	48	0	0	51	1.00
104551--104625	27	2.8	26	76	6	78	32	5	1	61	1.27
104664--104712	22	2.2	22	82	7	55	34	16	8	40	1.78
104672--104896	112	2.0	112	94	1	398	36	8	5	49	1.57
104823--104850	14	2.0	14	100	0	56	28	0	0	71	0.86
105169--105222	20	2.6	21	85	11	76	62	9	0	27	1.25
105524--105586	25	2.6	24	74	18	67	41	3	0	55	1.16
105578--105637	3	20.3	3	82	3	77	30	5	1	63	1.25
105600--105634	17	2.1	17	94	0	61	34	2	0	62	1.10
109993--110040	3	16.0	3	91	0	78	66	0	4	29	1.10
113818--113875	29	2.0	29	93	0	98	32	12	15	39	1.84
116932--116983	16	3.3	15	78	10	59	78	0	21	0	0.74
116932--116986	19	2.9	19	78	7	60	80	0	20	0	0.72
116952--116983	15	2.1	16	94	5	57	84	0	15	0	0.63
116954--116986	10	3.4	10	87	4	50	87	0	12	0	0.53

Tables:   1

The End!