genome.fa.s1818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1818
Parameters: 2 7 7 80 10 50 1000
Length:  81306

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149--223	22	3.5	22	72	15	68	34	12	10	42	1.77
9481--9531	21	2.4	21	84	12	68	39	0	31	29	1.57
10143--10204	32	1.9	33	87	9	92	30	14	14	40	1.86
10271--10301	13	2.4	13	94	0	53	32	12	12	41	1.81
13151--13207	21	2.8	21	75	15	57	31	3	0	64	1.10
14652--14982	153	2.1	155	82	6	404	24	16	19	38	1.92
26564--26808	95	2.6	95	82	0	319	35	11	25	27	1.90
28980--29057	20	3.8	20	79	12	77	38	10	12	38	1.78
30462--30520	20	2.8	20	82	5	64	38	13	11	35	1.82
30558--30611	21	2.7	20	77	8	65	35	14	12	37	1.85
31771--31811	3	14.0	3	84	5	57	73	0	26	0	0.84
32296--32358	27	2.3	26	81	10	72	60	1	1	36	1.16
33203--33255	28	1.9	27	85	11	72	52	5	5	35	1.49
33496--33546	20	2.6	20	78	3	59	47	7	15	29	1.74
35323--35395	20	3.6	20	81	3	101	35	13	19	31	1.91
35323--35417	41	2.3	42	96	1	174	40	12	17	29	1.87
35456--35481	13	2.0	13	100	0	52	38	15	15	30	1.88
39543--39573	15	2.1	15	93	0	53	48	16	22	12	1.80
41628--41666	20	2.0	20	94	0	69	23	15	10	51	1.73
41652--41690	13	3.0	13	96	0	69	30	17	15	35	1.91
44133--44205	20	3.6	20	81	3	101	35	13	19	31	1.91
44133--44227	41	2.3	42	96	1	174	40	12	17	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44266--44291	13	2.0	13	100	0	52	38	15	15	30	1.88
45826--45850	13	1.9	13	100	0	50	36	16	16	32	1.90
45805--45869	33	2.0	32	88	8	96	30	15	15	38	1.88
45839--45892	20	2.8	19	86	5	72	33	12	14	38	1.85
49886--49912	13	2.1	13	100	0	54	40	14	14	29	1.86
54200--54224	13	1.9	13	100	0	50	32	16	16	36	1.90
54274--54329	19	2.9	19	83	2	58	35	8	17	37	1.82
57123--57162	20	2.0	21	85	5	55	67	10	2	20	1.31
63129--63181	20	2.6	21	82	11	74	41	9	15	33	1.79
63146--63194	20	2.4	20	86	3	62	40	12	14	32	1.83
65538--66113	79	7.3	79	82	4	572	28	23	10	37	1.88
65536--66113	158	3.7	158	81	5	661	28	23	10	37	1.88
65538--66117	237	2.4	236	83	2	698	28	23	10	37	1.88
71714--71743	2	15.5	2	93	6	53	53	0	0	46	1.00
72192--72230	3	13.0	3	100	0	78	33	0	0	66	0.92
73373--73438	8	8.2	8	87	0	87	42	0	7	50	1.31
73373--73438	10	6.6	10	94	0	87	42	0	7	50	1.31
73373--73438	18	3.6	18	89	4	96	42	0	7	50	1.31
73726--73773	21	2.2	22	85	10	64	50	0	4	45	1.21
74761--74832	35	2.1	35	91	0	117	30	26	12	30	1.93
74848--74877	14	2.1	14	93	0	51	33	13	10	43	1.77
76882--77035	58	2.7	57	87	4	231	39	10	19	30	1.85

Tables:   1

The End!