Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1822
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1013428
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
File 1 of 7
Found at i:382 original size:166 final size:170
Alignment explanation
Indices: 207--623 Score: 460
Period size: 166 Copynumber: 2.5 Consensus size: 170
197 GCCTTTAAAC
* *
207 TTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCGGTTTTAAAAAATTCATTCAT
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTT-AAAAATTCATTCAT
* *** *
272 TTTCAT-AGGTTTTAAAATTTTTCC-CCGAAA-TTCTCC-T-ACTTCTAAAAAATAGA-ATTTTC
65 TTTCATGATG-TTT-AAATTTTTCCTAAAAAATTTC-CCTTGACTTCCAAAAAATAGAGATTTTC
* *
331 TACTCCTTAAA-TTTTTTT-GGGTGGGG-TTTTCTTAGTTTTTAA
127 TACTCCATAAATTTTTTTTGGGGGGGGGTTTTTCTTAGTTTTT-A
* * *
373 TTTTTAAAATTCATCAAATATTATTATTTATTTCATAATAAATCAGTTTTGAAAATTCTATT-AG
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTAAAAATTC-ATTCAT
* ** * * *
437 TTTCATGATGTTTGAATTTTTCCTTAAAAAATTTCCCTTGGTTTCCATAAAATAGAGTTTTTTTA
65 TTTCATGATGTTTAAATTTTTCC-TAAAAAATTTCCCTTGACTTCCAAAAAATAGAGATTTTCTA
*
502 GTCCATAAATTTTTTTTTGGGGGGGGGATTTTTTCTTAGTTTTTA
129 CTCCATAAA-TTTTTTTTGGGGGGGGG--TTTTTCTTAGTTTTTA
* * *
547 TTTTTTAAATCCATCAAATATTATTATTTATTTCATATTAAATTAGTTTTCAAAAATTCATTCAT
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTT-AAAAATTCATTCAT
612 TTTCATGA-GTTT
65 TTTCATGATGTTT
624 TGGATTTTTC
Statistics
Matches: 210, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
164 9 0.04
165 17 0.08
166 57 0.27
167 4 0.02
168 12 0.06
169 13 0.06
171 7 0.03
172 7 0.03
174 54 0.26
175 30 0.14
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (170 bp):
TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTAAAAATTCATTCATT
TTCATGATGTTTAAATTTTTCCTAAAAAATTTCCCTTGACTTCCAAAAAATAGAGATTTTCTACT
CCATAAATTTTTTTTGGGGGGGGGTTTTTCTTAGTTTTTA
Found at i:1333 original size:17 final size:17
Alignment explanation
Indices: 1290--1354 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 17
1280 AGCAAGTGAA
*
1290 AAAAAAACAAAAAAACA-
1 AAAAAAAGAAAAAAA-AG
**
1307 AAACAAAAGAAAGGAAAG
1 AAA-AAAAGAAAAAAAAG
*
1325 GAAAAAAGAAGAAAAAAG
1 AAAAAAAGAA-AAAAAAG
1343 AAAAAAAGAAAA
1 AAAAAAAGAAAA
1355 GCAAACTCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
17 13 0.34
18 25 0.66
ACGTcount: A:0.82, C:0.05, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAAAAG
Found at i:2247 original size:14 final size:14
Alignment explanation
Indices: 2228--2262 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2218 TGAAATTTTC
2228 AATAATAAGAAAAT
1 AATAATAAGAAAAT
*
2242 AATAATAATAAAAT
1 AATAATAAGAAAAT
2256 AA-AATAA
1 AATAATAA
2263 TAAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
AATAATAAGAAAAT
Found at i:4498 original size:41 final size:41
Alignment explanation
Indices: 4441--4616 Score: 135
Period size: 41 Copynumber: 4.3 Consensus size: 41
4431 GGTTGAAATC
* *
4441 GATAAAGCTAACAAGTTAAAAGGGTTGGCCAGGCCAAAACT
1 GATAAAGCCAACAAGTTAAAAGGGTTGGCCAGGGCAAAACT
* ** * *
4482 GATAAAGCCAACAAGTT-AAAGCAGTTAACAAAGGCAAAA-T
1 GATAAAGCCAACAAGTTAAAAG-GGTTGGCCAGGGCAAAACT
* * *
4522 CGATAAAGCCAA-ATGGTTAAAGGGGTTGAG-CAGGGAAAAACT
1 -GATAAAGCCAACA-AGTTAAAAGGGTTG-GCCAGGGCAAAACT
* * * * * *
4564 GATAAAGCCAATAGGTTAAAAAGGTTGGCTAGGGTAAAACC
1 GATAAAGCCAACAAGTTAAAAGGGTTGGCCAGGGCAAAACT
*
4605 GATAAAGTCAAC
1 GATAAAGCCAAC
4617 GAAAATGATA
Statistics
Matches: 105, Mismatches: 22, Indels: 16
0.73 0.15 0.11
Matches are distributed among these distances:
40 7 0.07
41 93 0.89
42 5 0.05
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.17
Consensus pattern (41 bp):
GATAAAGCCAACAAGTTAAAAGGGTTGGCCAGGGCAAAACT
Found at i:5054 original size:121 final size:123
Alignment explanation
Indices: 4664--5102 Score: 370
Period size: 123 Copynumber: 3.6 Consensus size: 123
4654 GGGCAAAATC
* * * * * *
4664 AATAAACCTAACAAGTTGAAA-GTGTTGGCCAAAGCGAAACCAATAAAGCTAACAAGTTAAAGGG
1 AATAAAACTAACAAGTT-AAAGGGGTTGGCCAGAGCGAAACCGATAAAGCCAACAAGTTAGAGGG
* * ** * * * * * * * * *
4728 ATTGGTCAAGG-TGAAACCTATAAAACCAACAAGTTAAAGGGGTTGGCT-AGAGCAAAACT
65 GTTGG-CCAGGACAAAACCGATAAAGCCAATAGGTTAGAGAGATTGACTAAG-GTAAAACT
* * * ** * ** * *
4787 AATAAAACCAAAAAGTTATAGATGTTGACCA-AGACGAAATTGATAAAACCAACAAGTTTGAGGG
1 AATAAAACTAACAAGTTAAAGGGGTTGGCCAGAG-CGAAACCGATAAAGCCAACAAGTTAGAGGG
* * *
4851 GTTGGCCAGGGCAAAACTGATAAAGCCAATAGGTTATAGAGATTGACTAAGGTAAAACT
65 GTTGGCCAGGACAAAACCGATAAAGCCAATAGGTTAGAGAGATTGACTAAGGTAAAACT
* * * * *
4910 AATAAAACTAACAGGTTAAAGGGGTTGGCTATAGTGAAGCCGATAAAGCCAACAAGTTAGA-GGG
1 AATAAAACTAACAAGTTAAAGGGGTTGGCCAGAGCGAAACCGATAAAGCCAACAAGTTAGAGGGG
* * ** * * * *
4974 TTGGCTAGTATGAAACCGAT-AAGCCAATGGGTTAGAG-GAGTTGGCTAGGGTGAAACT
66 TTGGCCAGGACAAAACCGATAAAGCCAATAGGTTAGAGAGA-TTGACTAAGGTAAAACT
*
5031 AATAAAACTAACAAGTTAGAGGGGTTGGCCAGAGCGAAACCGATAAAGCCAACAAGTTAGAGGGG
1 AATAAAACTAACAAGTTAAAGGGGTTGGCCAGAGCGAAACCGATAAAGCCAACAAGTTAGAGGGG
5096 TTGGCCA
66 TTGGCCA
5103 AGGTGAAACT
Statistics
Matches: 250, Mismatches: 59, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
120 2 0.01
121 84 0.34
122 34 0.14
123 126 0.50
124 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.20
Consensus pattern (123 bp):
AATAAAACTAACAAGTTAAAGGGGTTGGCCAGAGCGAAACCGATAAAGCCAACAAGTTAGAGGGG
TTGGCCAGGACAAAACCGATAAAGCCAATAGGTTAGAGAGATTGACTAAGGTAAAACT
Found at i:5136 original size:41 final size:41
Alignment explanation
Indices: 4664--5139 Score: 250
Period size: 41 Copynumber: 11.7 Consensus size: 41
4654 GGGCAAAATC
* * * *
4664 AATAAA-CCTAACAAGTTGAAA-GTGTTGGCCAAAGCGAAACC
1 AATAAAGCC-AACAAGTT-AAAGGGGTTGGCCAAGGTGAAACT
* * *
4705 AATAAAGCTAACAAGTTAAAGGGATTGGTCAAGGTGAAACCT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAA-CT
* * **
4747 -ATAAAACCAACAAGTTAAAGGGGTTGG-CTAGAGCAAAACT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAG-GTGAAACT
* * * ** * ** *
4787 AATAAAACCAAAAAGTTATAGATGTTGACCAAGACGAAATT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAACT
* * ** * **
4828 GATAAAACCAACAAGTTTGAGGGGTTGGCCAGGGCAAAACT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAACT
* * * * * * * * *
4869 GATAAAGCCAATAGGTTATAGAGATTGACTAAGGTAAAACT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAACT
* * * * * *
4910 AATAAAACTAACAGGTTAAAGGGGTTGGCTATA-GTGAAGCC
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCA-AGGTGAAACT
* * * * *
4951 GATAAAGCCAACAAGTTAGA-GGGTTGG-CTAGTATGAAACC
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAG-GTGAAACT
* *** * * * *
4991 GAT-AAGCCAATGGGTTAGAGGAGTTGGCTAGGGTGAAACT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAACT
* * * * *
5031 AATAAAACTAACAAGTTAGAGGGGTTGGCC-AGAGCGAAACC
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAG-GTGAAACT
* *
5072 GATAAAGCCAACAAGTTAGAGGGGTTGGCCAAGGTGAAACT
1 AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAACT
* *
5113 AATAAAGCTAACAGGTTAAAGGGGTTG
1 AATAAAGCCAACAAGTTAAAGGGGTTG
5140 TTTAAAGGTT
Statistics
Matches: 328, Mismatches: 93, Indels: 28
0.73 0.21 0.06
Matches are distributed among these distances:
38 1 0.00
39 13 0.04
40 39 0.12
41 267 0.81
42 8 0.02
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.20
Consensus pattern (41 bp):
AATAAAGCCAACAAGTTAAAGGGGTTGGCCAAGGTGAAACT
Found at i:6435 original size:105 final size:104
Alignment explanation
Indices: 6323--6521 Score: 281
Period size: 105 Copynumber: 1.9 Consensus size: 104
6313 CAGGCTATAA
*
6323 ATGGGTTGAAGGGCTTAAAAAAACTTTGGTTGGCTCACAAATTTCAAAAAACAAAAGACAAGATA
1 ATGGGTTGAAAGGCTTAAAAAAACTTTGGTTGGCTCACAAATTTCAAAAAA-AAAAGACAAGATA
*
6388 TATGCCCTAGATTCCTAGGCACGAATGGATTAGGTCGTAT
65 TATGCCCTAGATTCCTAGGCACAAATGGATTAGGTCGTAT
* * ** * * * *
6428 ATGGGTTGAAAGGTTTCAAAAAACTTTGGTTGGCTTGCAAATTTCAGAAAAAAATGATAGGATAT
1 ATGGGTTGAAAGGCTTAAAAAAACTTTGGTTGGCTCACAAATTTCAAAAAAAAAAGACAAGATAT
**
6493 ATGCCCTATTTTCCTAGGCACAAATGGAT
66 ATGCCCTAGATTCCTAGGCACAAATGGAT
6522 ATAAAATATG
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
104 37 0.45
105 45 0.55
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (104 bp):
ATGGGTTGAAAGGCTTAAAAAAACTTTGGTTGGCTCACAAATTTCAAAAAAAAAAGACAAGATAT
ATGCCCTAGATTCCTAGGCACAAATGGATTAGGTCGTAT
Found at i:8313 original size:14 final size:16
Alignment explanation
Indices: 8294--8325 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8284 GAAAAGTTAT
8294 AACAAA-ATA-ATAGA
1 AACAAATATATATAGA
8308 AACAAATATATATAGA
1 AACAAATATATATAGA
8324 AA
1 AA
8326 GGGTTATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
AACAAATATATATAGA
Found at i:11606 original size:26 final size:26
Alignment explanation
Indices: 11570--11623 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11560 TAGGAGAGAG
11570 AAAAAAGATTTAATTTTTGGTTCAAA
1 AAAAAAGATTTAATTTTTGGTTCAAA
*
11596 AAAAAAGATTTAATTTTTGGTTGAAA
1 AAAAAAGATTTAATTTTTGGTTCAAA
11622 AA
1 AA
11624 CAAGGTTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.48, C:0.02, G:0.13, T:0.37
Consensus pattern (26 bp):
AAAAAAGATTTAATTTTTGGTTCAAA
Found at i:14201 original size:51 final size:52
Alignment explanation
Indices: 14084--14216 Score: 160
Period size: 51 Copynumber: 2.6 Consensus size: 52
14074 TTATCTATAA
* * * * *
14084 GTATCGATACATTAAAGAAGGTATTAATACATTTAGGTTAAAAACCCAAAAT
1 GTATCAATACAATGAAGAATGTATTGATACATTTAGGTTAAAAACCCAAAAT
* * **
14136 GTATCAATATAATGAAGAATGTATTGATACATTTGGGTT-AAAACCCTGAAT
1 GTATCAATACAATGAAGAATGTATTGATACATTTAGGTTAAAAACCCAAAAT
* *
14187 GTATCAATACAATGAAAAATGTATCGATAC
1 GTATCAATACAATGAAGAATGTATTGATAC
14217 GTTTTCATTC
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
51 37 0.54
52 32 0.46
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (52 bp):
GTATCAATACAATGAAGAATGTATTGATACATTTAGGTTAAAAACCCAAAAT
Found at i:14299 original size:20 final size:20
Alignment explanation
Indices: 14276--14314 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14266 CATTTCAGAC
* *
14276 ATGTATCGATATATTCACTT
1 ATGTATCGACACATTCACTT
14296 ATGTATCGACACATTCACT
1 ATGTATCGACACATTCACT
14315 AATTATATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
ATGTATCGACACATTCACTT
Found at i:15235 original size:29 final size:28
Alignment explanation
Indices: 15202--15578 Score: 253
Period size: 29 Copynumber: 12.9 Consensus size: 28
15192 TTGAAAGGGT
*
15202 TGCCACCAACTTGTGGGCTTTAAGAAGGA
1 TGCCACTAACTTGTGGGCTTTAA-AAGGA
* *
15231 TGCCACTGACTTGTGGGCTTTAAAA-TA
1 TGCCACTAACTTGTGGGCTTTAAAAGGA
15258 GTGCCACTAACTTGTGGGCTTTAAGAAGGA
1 -TGCCACTAACTTGTGGGCTTTAA-AAGGA
* * *
15288 TGCCATTTACTTGTGGGCTTTGAAA-GA
1 TGCCACTAACTTGTGGGCTTTAAAAGGA
* * *
15315 TTGCCACTAACTTATAGGCTTTCAAAGGGAA
1 -TGCCACTAACTTGTGGGCTTT-AAAAGG-A
**
15346 TGCCACTAACTTATGTGGGCTTTGAAAAAAA
1 TGCCACTAAC-T-TGTGGGCTTT-AAAAGGA
* * * **
15377 TGTCACTGACTTGTGAGCTTTAAAAAAAA
1 TGCCACTAACTTGTGGGCTTT-AAAAGGA
* *
15406 TGCCACTAACTTGTAGGCTTTAAAAAGGT
1 TGCCACTAACTTGTGGGCTTT-AAAAGGA
* * * *
15435 TACCACCGAATTATGTGGGCTTTTGAAAA-CA
1 TGCCA-CTAACT-TGTGGGC-TTT-AAAAGGA
*
15466 TTGCCACTAACTTGTAGGCTTTTGAAAAAGGCA
1 -TGCCACTAACTTGTGGGC-TTT--AAAAGG-A
*
15499 --CCACTAACTTGTGGGCTTTGAAAGGA
1 TGCCACTAACTTGTGGGCTTTAAAAGGA
** * * *
15525 TAACACTCACTTATGGGCTTTGAAA-GA
1 TGCCACTAACTTGTGGGCTTTAAAAGGA
15552 GTGCCACTAACTTGTGGGCTTTGAAAA
1 -TGCCACTAACTTGTGGGCTTT-AAAA
15579 ATGTGCCACA
Statistics
Matches: 274, Mismatches: 54, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.00
27 10 0.04
28 80 0.29
29 93 0.34
30 42 0.15
31 25 0.09
32 22 0.08
33 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (28 bp):
TGCCACTAACTTGTGGGCTTTAAAAGGA
Found at i:15278 original size:57 final size:55
Alignment explanation
Indices: 15202--15578 Score: 281
Period size: 57 Copynumber: 6.5 Consensus size: 55
15192 TTGAAAGGGT
* *
15202 TGCCACCAACTTGTGGGCTTTAAGAAGGATGCCACTGACTTGTGGGCTTTAAAATAG
1 TGCCACTAACTTGTGGGCTTTAA-AAGGATGCCACTAACTTGTGGGCTTTAAAA-AG
* * * *
15259 TGCCACTAACTTGTGGGCTTTAAGAAGGATGCCATTTACTTGTGGGCTTTGAAAGAT
1 TGCCACTAACTTGTGGGCTTTAA-AAGGATGCCACTAACTTGTGGGCTTT-AAAAAG
* * * *
15316 TGCCACTAACTTATAGGCTTTCAAAGGGAATGCCACTAACTTATGTGGGCTTTGAAAAAAA
1 TGCCACTAACTTGTGGGCTTT-AAAAGG-ATGCCACTAAC-T-TGTGGGCTTT--AAAAAG
* * * ** *
15377 TGTCACTGACTTGTGAGCTTTAAAAAAAATGCCACTAACTTGTAGGCTTTAAAAAGG
1 TGCCACTAACTTGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTAAAAA-G
* * * * *
15434 TTACCACCGAATTATGTGGGCTTTTGAAAA-CATTGCCACTAACTTGTAGGCTTTTGAAAAAG
1 -TGCCA-CTAACT-TGTGGGC-TTT-AAAAGGA-TGCCACTAACTTGTGGGC-TTT-AAAAAG
* ** * * *
15496 -GCACCACTAACTTGTGGGCTTTGAAAGGATAACACTCACTTATGGGCTTTGAAAGAG
1 TG--CCACTAACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-AAAAAG
15553 TGCCACTAACTTGTGGGCTTTGAAAA
1 TGCCACTAACTTGTGGGCTTT-AAAA
15579 ATGTGCCACA
Statistics
Matches: 257, Mismatches: 44, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
56 24 0.09
57 82 0.32
58 43 0.17
59 9 0.04
60 35 0.14
61 52 0.20
62 7 0.03
63 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (55 bp):
TGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTAAAAAG
Found at i:15479 original size:90 final size:90
Alignment explanation
Indices: 15316--15579 Score: 213
Period size: 90 Copynumber: 3.0 Consensus size: 90
15306 TTTGAAAGAT
* * * * *
15316 TGCCACTAACTTATAGGCTTTCAAAGGGAATGCCACTAACTTATGTGGGCTTTGAAAAAAATGTC
1 TGCCACTAACTTATAGGCTTTAAAAAGGAATACCACGAACTTATGTGGGCTTTGAAAAAAATGCC
*
15381 ACTGACTTGTGAGCTTTAAAAAAAA
66 ACTAACTTGTGAGCTTTAAAAAAAA
* * * *
15406 TGCCACTAACTTGTAGGCTTTAAAAAGG-TTACCACCGAA-TTATGTGGGCTTTTGAAAACATTG
1 TGCCACTAACTTATAGGCTTTAAAAAGGAATACCA-CGAACTTATGTGGGC-TTTGAAAAAAATG
**
15469 CCACTAACTTGT-AGGCTTT-TGAAAAA
64 CCACTAACTTGTGA-GCTTTAAAAAAAA
* * * * * ** * *
15495 GGCACCACTAACTTGTGGGCTTT-GAAAGG-ATAACACTCACTTA--TGGGCTTTG-AAAGAGTG
1 TG--CCACTAACTTATAGGCTTTAAAAAGGAATACCACGAACTTATGTGGGCTTTGAAAAAAATG
* *
15555 CCACTAACTTGTGGGCTTTGAAAAA
64 CCACTAACTTGTGAGCTTTAAAAAA
15580 TGTGCCACAG
Statistics
Matches: 142, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
86 23 0.16
87 7 0.05
88 5 0.04
89 23 0.16
90 66 0.46
91 18 0.13
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (90 bp):
TGCCACTAACTTATAGGCTTTAAAAAGGAATACCACGAACTTATGTGGGCTTTGAAAAAAATGCC
ACTAACTTGTGAGCTTTAAAAAAAA
Found at i:15503 original size:30 final size:28
Alignment explanation
Indices: 15204--15579 Score: 105
Period size: 28 Copynumber: 12.9 Consensus size: 28
15194 GAAAGGGTTG
* * *
15204 CCACCAACTTGTGGGCTTT-AAGAAGGA
1 CCACTAACTTGTAGGCTTTGAAAAAGGA
* *
15231 TGCCACTGACTTGTGGGCTTT-AAAATAGTG-
1 --CCACTAACTTGTAGGCTTTGAAAA-AG-GA
* *
15261 CCACTAACTTGTGGGCTTT-AAGAAGGA
1 CCACTAACTTGTAGGCTTTGAAAAAGGA
* * * **
15288 TGCCATTTACTTGTGGGCTTTGAAAGATTG-
1 --CCACTAACTTGTAGGCTTTGAAA-AAGGA
* * *
15318 CCACTAACTTATAGGCTTT-CAAAGGGAA
1 CCACTAACTTGTAGGCTTTGAAAAAGG-A
* *
15346 TGCCACTAACTTATGTGGGCTTTGAAAAA-AA
1 --CCACTAAC-T-TGTAGGCTTTGAAAAAGGA
* * **
15377 TGTCACTGACTTGT-GAGCTTT-AAAAAAAA
1 --CCACTAACTTGTAG-GCTTTGAAAAAGGA
15406 TGCCACTAACTTGTAGGCTTT-AAAAAGGTTA
1 --CCACTAACTTGTAGGCTTTGAAAAAGG--A
* * * *
15437 CCACCGAATTATGTGGGCTTTTGAAAACATTG-
1 CCA-CTAACT-TGTAGGC-TTTGAAAA-A-GGA
15469 CCACTAACTTGTAGGCTTTTGAAAAAGGCA
1 CCACTAACTTGTAGGC-TTTGAAAAAGG-A
*
15499 CCACTAACTTGTGGGCTTTG--AAAGGATA
1 CCACTAACTTGTAGGCTTTGAAAAAGG--A
* * * * *
15527 ACACTCACTTATGGGCTTTGAAAGAGTG-
1 CCACTAACTTGTAGGCTTTGAAAAAG-GA
*
15555 CCACTAACTTGTGGGCTTTGAAAAA
1 CCACTAACTTGTAGGCTTTGAAAAA
15580 TGTGCCACAG
Statistics
Matches: 270, Mismatches: 46, Indels: 63
0.71 0.12 0.17
Matches are distributed among these distances:
26 3 0.01
27 9 0.03
28 82 0.30
29 77 0.29
30 51 0.19
31 25 0.09
32 14 0.05
33 7 0.03
34 1 0.00
35 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (28 bp):
CCACTAACTTGTAGGCTTTGAAAAAGGA
Found at i:15633 original size:28 final size:28
Alignment explanation
Indices: 15602--15781 Score: 103
Period size: 29 Copynumber: 6.2 Consensus size: 28
15592 TTCTGAGCTC
*
15602 TAAAAAGGTGTCAAGGAGTTATGGGCTT
1 TAAAAAGGTGTCAAGGAGTTATGGACTT
* * * * *
15630 T-AAAATGTGCCACGGAGTTGTAGACTT
1 TAAAAAGGTGTCAAGGAGTTATGGACTT
* * *
15657 AAAAAAGGTGTCACA-AAGTTGTGGACTT
1 TAAAAAGGTGTCA-AGGAGTTATGGACTT
* * *
15685 TGAAAAGGGTGTCACGGAGTTATGAACTT
1 T-AAAAAGGTGTCAAGGAGTTATGGACTT
* * *
15714 TAAAAAAAAAGGATGCCACGGAGTTATGAACTT
1 T----AAAAAGG-TGTCAAGGAGTTATGGACTT
* * * *
15747 AAAAAGAGGCGTCACGCAGTTATGGACTT
1 TAAAA-AGGTGTCAAGGAGTTATGGACTT
15776 TAAAAA
1 TAAAAA
15782 AGGGTGCCAT
Statistics
Matches: 116, Mismatches: 27, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
27 20 0.17
28 22 0.19
29 46 0.40
30 3 0.03
32 6 0.05
33 19 0.16
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (28 bp):
TAAAAAGGTGTCAAGGAGTTATGGACTT
Found at i:15661 original size:27 final size:26
Alignment explanation
Indices: 15575--15661 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 26
15565 GTGGGCTTTG
* *
15575 AAAAATGTGCCACAGAGTTCTGAGCTCT
1 AAAAATGTGCCACGGAGTTATGA-CT-T
* * * *
15603 AAAAAGGTGTCAAGGAGTTATGGGCTT
1 AAAAATGTGCCACGGAGTTAT-GACTT
* *
15630 TAAAATGTGCCACGGAGTTGTAGACTT
1 AAAAATGTGCCACGGAGTTAT-GACTT
15657 AAAAA
1 AAAAA
15662 AGGTGTCACA
Statistics
Matches: 44, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
27 25 0.57
28 18 0.41
29 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (26 bp):
AAAAATGTGCCACGGAGTTATGACTT
Found at i:15705 original size:29 final size:29
Alignment explanation
Indices: 15602--15841 Score: 139
Period size: 30 Copynumber: 8.2 Consensus size: 29
15592 TTCTGAGCTC
* * *
15602 TAAAAA-GGTGTCAAGGAGTTATGGGCTT
1 TAAAAAGGGTGCCACGGAGTTATGGACTT
* * *
15630 T-AAAA-TGTGCCACGGAGTTGTAGAC-T
1 TAAAAAGGGTGCCACGGAGTTATGGACTT
* * ** *
15656 TAAAAAAGGTGTCACAAAGTTGTGGACTT
1 TAAAAAGGGTGCCACGGAGTTATGGACTT
* * *
15685 TGAAAAGGGTGTCACGGAGTTATGAACTT
1 TAAAAAGGGTGCCACGGAGTTATGGACTT
* *
15714 TAAAAAAAAAGGATGCCACGGAGTTATGAAC-T
1 T----AAAAAGGGTGCCACGGAGTTATGGACTT
* * *
15746 TAAAAAGAGGCGTCACGCAGTTATGGACTT
1 TAAAAAG-GGTGCCACGGAGTTATGGACTT
*** *
15776 TAAAAAAGGGTGCCATAAAGTTGTGGACTT
1 T-AAAAAGGGTGCCACGGAGTTATGGACTT
* ** *
15806 TAAAAAAGGGTACCACAAAGTTGTGGACTT
1 T-AAAAAGGGTGCCACGGAGTTATGGACTT
15836 TAAAAA
1 TAAAAA
15842 TATACCATAG
Statistics
Matches: 169, Mismatches: 33, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
26 2 0.01
27 22 0.13
28 22 0.13
29 45 0.27
30 47 0.28
31 6 0.04
32 2 0.01
33 23 0.14
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.25
Consensus pattern (29 bp):
TAAAAAGGGTGCCACGGAGTTATGGACTT
Found at i:15719 original size:57 final size:56
Alignment explanation
Indices: 15563--15719 Score: 158
Period size: 55 Copynumber: 2.8 Consensus size: 56
15553 TGCCACTAAC
* * * * *
15563 TTGTGGGCTTTGAAAAATGTGCCACAGAGTTCTGAGCTCTAAAAAGGTGTCAAGGAG
1 TTGTGGGCTTTG-AAAATGTGCCACGGAGTTATGAACTTTAAAAAGGTGTCAAGAAG
* * *
15620 TTATGGGCTTT-AAAATGTGCCACGGAGTTGT-AGACTTAAAAAAGGTGTCACA-AAG
1 TTGTGGGCTTTGAAAATGTGCCACGGAGTTATGA-ACTTTAAAAAGGTGTCA-AGAAG
* * *
15675 TTGTGGACTTTGAAAAGGGTGTCACGGAGTTATGAACTTTAAAAA
1 TTGTGGGCTTTGAAAA-TGTGCCACGGAGTTATGAACTTTAAAAA
15720 AAAAGGATGC
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
54 1 0.01
55 43 0.52
56 5 0.06
57 32 0.39
58 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.28
Consensus pattern (56 bp):
TTGTGGGCTTTGAAAATGTGCCACGGAGTTATGAACTTTAAAAAGGTGTCAAGAAG
Found at i:15734 original size:33 final size:32
Alignment explanation
Indices: 15687--15751 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
15677 GTGGACTTTG
* *
15687 AAAAGGGTGTCACGGAGTTATGAACTTTAAAAA
1 AAAAGGATGCCACGGAGTTATGAAC-TTAAAAA
15720 AAAAGGATGCCACGGAGTTATGAACTTAAAAA
1 AAAAGGATGCCACGGAGTTATGAACTTAAAAA
15752 GAGGCGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 7 0.23
33 23 0.77
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.22
Consensus pattern (32 bp):
AAAAGGATGCCACGGAGTTATGAACTTAAAAA
Found at i:15904 original size:29 final size:30
Alignment explanation
Indices: 15862--15936 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
15852 AGTCAGGGAT
*
15862 TTTTAGAAAAGATGCCACTAAGTC-TAGAC
1 TTTTAGAAGAGATGCCACTAAGTCGTAGAC
* * * *
15891 TTTTAGAAGAGATGCAATTGAGTCGTGGAC
1 TTTTAGAAGAGATGCCACTAAGTCGTAGAC
*
15921 TTTGAGAAGAGATGCC
1 TTTTAGAAGAGATGCC
15937 CTTTGAGAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 20 0.53
30 18 0.47
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (30 bp):
TTTTAGAAGAGATGCCACTAAGTCGTAGAC
Found at i:15942 original size:17 final size:17
Alignment explanation
Indices: 15920--15953 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15910 GAGTCGTGGA
*
15920 CTTTGAGAAGAGATGCC
1 CTTTGAGAAGAAATGCC
15937 CTTTGAGAAGAAATGCC
1 CTTTGAGAAGAAATGCC
15954 ACTGAGTCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (17 bp):
CTTTGAGAAGAAATGCC
Found at i:15964 original size:47 final size:47
Alignment explanation
Indices: 15890--15983 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
15880 TAAGTCTAGA
* * * *
15890 CTTTTAGAAGAGATGCAATTGAGTCGTGGACTTTGAGAAGAGATGCC
1 CTTTGAGAAGAAATGCAACTGAGTCGTGGACTTTAAGAAGAGATGCC
*
15937 CTTTGAGAAGAAATGCCACTGAGTCGTGGACTTTAAGAAGAGATGCC
1 CTTTGAGAAGAAATGCAACTGAGTCGTGGACTTTAAGAAGAGATGCC
15984 ACTGAGTCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (47 bp):
CTTTGAGAAGAAATGCAACTGAGTCGTGGACTTTAAGAAGAGATGCC
Found at i:15977 original size:30 final size:30
Alignment explanation
Indices: 15937--16062 Score: 127
Period size: 30 Copynumber: 4.2 Consensus size: 30
15927 AAGAGATGCC
15937 CTTTGAGAAGAAATGCCACT-GAGTCGTGGA
1 CTTTGAGAAGAAATGCCACTAG-GTCGTGGA
* * *
15967 CTTTAAGAAGAGATGCCACT-GAGTCGTGAA
1 CTTTGAGAAGAAATGCCACTAG-GTCGTGGA
*
15997 CTTT--GAAGAAAGGTGCCACTAGGTCGTAGA
1 CTTTGAGAAGAAA--TGCCACTAGGTCGTGGA
*
16027 CTTTGAGAA-AGAATGCCACTAGGTTGTGGA
1 CTTTGAGAAGA-AATGCCACTAGGTCGTGGA
16057 CTTTGA
1 CTTTGA
16063 AAAGGCTACT
Statistics
Matches: 82, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
28 6 0.07
30 69 0.84
31 2 0.02
32 5 0.06
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (30 bp):
CTTTGAGAAGAAATGCCACTAGGTCGTGGA
Found at i:16030 original size:60 final size:58
Alignment explanation
Indices: 15943--16063 Score: 140
Period size: 60 Copynumber: 2.1 Consensus size: 58
15933 TGCCCTTTGA
*
15943 GAAGAAATGCCACTGAGTCGTGGACTTTAAG-AAGAGATGCCACT-GAGTCGTGAACTTT
1 GAAGAAATGCCACTGAGTCGTAGACTTTAAGAAAGA-ATGCCACTAG-GTCGTGAACTTT
* * *
16001 GAAGAAAGGTGCCACT-AGGTCGTAGACTTTGAGAAAGAATGCCACTAGGTTGTGGACTTT
1 GAAGAAA--TGCCACTGA-GTCGTAGACTTTAAGAAAGAATGCCACTAGGTCGTGAACTTT
16061 GAA
1 GAA
16064 AAGGCTACTT
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
58 7 0.13
59 1 0.02
60 41 0.76
61 5 0.09
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (58 bp):
GAAGAAATGCCACTGAGTCGTAGACTTTAAGAAAGAATGCCACTAGGTCGTGAACTTT
Found at i:27204 original size:21 final size:20
Alignment explanation
Indices: 27164--27208 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
27154 ATTTATAACT
*
27164 CCTAGAATCAGGGAACAATC
1 CCTAGAATAAGGGAACAATC
27184 CCTAGAATAAAGGGATA-AATC
1 CCTAGAAT-AAGGGA-ACAATC
27205 CCTA
1 CCTA
27209 ATTTCTCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 13 0.59
22 1 0.05
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (20 bp):
CCTAGAATAAGGGAACAATC
Found at i:29201 original size:26 final size:26
Alignment explanation
Indices: 29162--29211 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
29152 ACAAGAAATA
* * *
29162 CAATTTCTTGTTTTCTTTTAACATTT
1 CAATCTCTTCTTTTCTTTCAACATTT
29188 CAATCTCTTCTTTTCTTTCAACAT
1 CAATCTCTTCTTTTCTTTCAACAT
29212 CGTATTAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.02, T:0.56
Consensus pattern (26 bp):
CAATCTCTTCTTTTCTTTCAACATTT
Found at i:31090 original size:38 final size:39
Alignment explanation
Indices: 31039--31123 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
31029 AAAGCTCTCC
31039 TCTAAACCTTTCAAAC-CAATTGTAGA-AACTCTAAACCT
1 TCTAAACCTTTCAAACGC-ATTGTAGAGAACTCTAAACCT
* *
31077 TCTAAACCTTTCAAACGCGTTGTAGAGACCTCTAAACCT
1 TCTAAACCTTTCAAACGCATTGTAGAGAACTCTAAACCT
*
31116 TCTGAACC
1 TCTAAACC
31124 CATCCCCAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 23 0.55
39 19 0.45
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.28
Consensus pattern (39 bp):
TCTAAACCTTTCAAACGCATTGTAGAGAACTCTAAACCT
Found at i:40773 original size:2 final size:2
Alignment explanation
Indices: 40766--40791 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
40756 AAATTAGCAA
40766 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
40792 TGAAAATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40973 original size:3 final size:3
Alignment explanation
Indices: 40965--41006 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
40955 TGTAACTTAA
40965 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
41007 TAATTCATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:41161 original size:64 final size:64
Alignment explanation
Indices: 41093--41214 Score: 235
Period size: 64 Copynumber: 1.9 Consensus size: 64
41083 GCAAATCACA
41093 AAAGCATCAAAGAAAACATAACAAAAATATACAACAATATGGTTAAGGAGAATTGAAAATCATG
1 AAAGCATCAAAGAAAACATAACAAAAATATACAACAATATGGTTAAGGAGAATTGAAAATCATG
*
41157 AAAGCATCAAAGAAAACATCACAAAAATATACAACAATATGGTTAAGGAGAATTGAAA
1 AAAGCATCAAAGAAAACATAACAAAAATATACAACAATATGGTTAAGGAGAATTGAAA
41215 TGTTCCGCGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.18
Consensus pattern (64 bp):
AAAGCATCAAAGAAAACATAACAAAAATATACAACAATATGGTTAAGGAGAATTGAAAATCATG
Found at i:42299 original size:24 final size:25
Alignment explanation
Indices: 42243--42300 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
42233 CTTAAGCATT
* *
42243 AAAGAAAAATGATAGAACTGAACCC
1 AAAGAAAAATGATAAAACTGAAACC
42268 AAA-AAAAATTGATAAAACT-AAACC
1 AAAGAAAAA-TGATAAAACTGAAACC
*
42292 AGAGAAAAA
1 AAAGAAAAA
42301 ATGCTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (25 bp):
AAAGAAAAATGATAAAACTGAAACC
Found at i:47349 original size:21 final size:22
Alignment explanation
Indices: 47324--47364 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
47314 CTATTACTTT
* *
47324 TTATTGTTCTCTAT-CTTGTGC
1 TTATTGATCTATATACTTGTGC
47345 TTATTGATCTATATACTTGT
1 TTATTGATCTATATACTTGT
47365 TAGTTGGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.56
Consensus pattern (22 bp):
TTATTGATCTATATACTTGTGC
Found at i:50241 original size:1 final size:1
Alignment explanation
Indices: 50235--50260 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
50225 AGCCTGTCAT
50235 CCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCC
50261 AAAAAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:52608 original size:30 final size:30
Alignment explanation
Indices: 52572--52633 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
52562 TTTACTTTTA
*
52572 TTTGATTCAATATTT-TATTAAATTTTTATT
1 TTTGATTCAAT-TTTATATTAAATTTTGATT
*
52602 TTTGATTGAATTTTACTATTAAATTTTGATT
1 TTTGATTCAATTTTA-TATTAAATTTTGATT
52633 T
1 T
52634 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 10 0.36
31 15 0.54
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (30 bp):
TTTGATTCAATTTTATATTAAATTTTGATT
Found at i:57975 original size:30 final size:30
Alignment explanation
Indices: 57939--58000 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
57929 TTTACTTTTA
*
57939 TTTGATTCAATATTT-TATTAAATTTTTATT
1 TTTGATTCAAT-TTTATATTAAATTTTGATT
*
57969 TTTGATTGAATTTTACTATTAAATTTTGATT
1 TTTGATTCAATTTTA-TATTAAATTTTGATT
58000 T
1 T
58001 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 10 0.36
31 15 0.54
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (30 bp):
TTTGATTCAATTTTATATTAAATTTTGATT
Found at i:59411 original size:30 final size:30
Alignment explanation
Indices: 59375--59436 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
59365 TTTACTTTTA
*
59375 TTTGATTCAATATTT-TATTAAATTTTTATT
1 TTTGATTCAAT-TTTATATTAAATTTTGATT
*
59405 TTTGATTGAATTTTACTATTAAATTTTGATT
1 TTTGATTCAATTTTA-TATTAAATTTTGATT
59436 T
1 T
59437 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 10 0.36
31 15 0.54
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (30 bp):
TTTGATTCAATTTTATATTAAATTTTGATT
Found at i:61038 original size:20 final size:19
Alignment explanation
Indices: 61013--61084 Score: 81
Period size: 20 Copynumber: 3.7 Consensus size: 19
61003 ACTACCCAGA
*
61013 TGTATCGATACATCTTGCTT
1 TGTATCGATACATCTT-CAT
*
61033 TGTATCGATACATGTTCAT
1 TGTATCGATACATCTTCAT
** *
61052 TGTATCGATACATGGATAAT
1 TGTATCGATACAT-CTTCAT
61072 TGTATCGATACAT
1 TGTATCGATACAT
61085 GAAACTGGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
19 15 0.32
20 32 0.68
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATCTTCAT
Found at i:61085 original size:20 final size:20
Alignment explanation
Indices: 61032--61085 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
61022 ACATCTTGCT
* *
61032 TTGTATCGATACAT-GTTCA
1 TTGTATCGATACATGGATAA
61051 TTGTATCGATACATGGATAA
1 TTGTATCGATACATGGATAA
61071 TTGTATCGATACATG
1 TTGTATCGATACATG
61086 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGGATAA
Found at i:61145 original size:20 final size:21
Alignment explanation
Indices: 61115--61189 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 21
61105 TATCACTATT
*
61115 TGTATTGATACAT-AGTACAA
1 TGTATCGATACATAAGTACAA
* *
61135 TGTATCAATACATCAA-TACAT
1 TGTATCGATACAT-AAGTACAA
61156 TGTATCGATACATGAAG-A-AA
1 TGTATCGATACAT-AAGTACAA
61176 TGTATCGATACATA
1 TGTATCGATACATA
61190 GCTTGTAACG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.02
20 25 0.54
21 19 0.41
22 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.32
Consensus pattern (21 bp):
TGTATCGATACATAAGTACAA
Found at i:67525 original size:20 final size:22
Alignment explanation
Indices: 67481--67527 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
67471 AATTTTCCAC
67481 AAAT-TTTCACTTTTTCACTTCA
1 AAATCTTTCACTTTTTCAC-TCA
67503 AAATCTTTCA-TTTTTCA-TCA
1 AAATCTTTCACTTTTTCACTCA
67523 AAATC
1 AAATC
67528 ATCAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.33
22 11 0.46
23 5 0.21
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATCTTTCACTTTTTCACTCA
Found at i:71180 original size:13 final size:13
Alignment explanation
Indices: 71162--71192 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
71152 ACATTTCTTC
71162 ATGTATCGATATA
1 ATGTATCGATATA
71175 ATGTATCGATATA
1 ATGTATCGATATA
*
71188 TTGTA
1 ATGTA
71193 CTATGTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (13 bp):
ATGTATCGATATA
Found at i:71281 original size:19 final size:19
Alignment explanation
Indices: 71237--71292 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
71227 CTACCAGTTT
**
71237 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
71257 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
71276 CATGTATCGATACAATG
1 CATGTATCGATACAATG
71293 TATCGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:71295 original size:13 final size:13
Alignment explanation
Indices: 71277--71303 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71267 TACAATGAAC
71277 ATGTATCGATACA
1 ATGTATCGATACA
71290 ATGTATCGATACA
1 ATGTATCGATACA
71303 A
1 A
71304 AGCAAGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:71299 original size:32 final size:33
Alignment explanation
Indices: 71258--71322 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
71248 ACAATTGTCC
*
71258 ATGTATCGATACAATG-AACATGTATCGATACA
1 ATGTATCGATACAAAGCAACATGTATCGATACA
* *
71290 ATGTATCGATACAAAGCAAGATGTATTGATACA
1 ATGTATCGATACAAAGCAACATGTATCGATACA
71323 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAAAGCAACATGTATCGATACA
Found at i:72147 original size:1 final size:1
Alignment explanation
Indices: 72143--72230 Score: 59
Period size: 1 Copynumber: 88.0 Consensus size: 1
72133 ATTCTTTTTT
* * * * * * * * *
72143 AAAAAAACAAAAAAACAACAAAAAACAAAAAAAAACAAAAAAACAACAAAAAAAAAACAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
72208 ATAGAAAAAAAAAGAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAA
72231 GAGCCTGCTT
Statistics
Matches: 61, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:72175 original size:28 final size:27
Alignment explanation
Indices: 72143--72199 Score: 105
Period size: 28 Copynumber: 2.1 Consensus size: 27
72133 ATTCTTTTTT
72143 AAAAAAACAAAAAAACAACAAAAAACAA
1 AAAAAAACAAAAAAACAACAAAAAA-AA
72171 AAAAAAACAAAAAAACAACAAAAAAAA
1 AAAAAAACAAAAAAACAACAAAAAAAA
72198 AA
1 AA
72200 CAACAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (27 bp):
AAAAAAACAAAAAAACAACAAAAAAAA
Found at i:72217 original size:18 final size:15
Alignment explanation
Indices: 72143--72219 Score: 68
Period size: 14 Copynumber: 4.9 Consensus size: 15
72133 ATTCTTTTTT
72143 AAAAAAACAAAAAAAC
1 AAAAAAA-AAAAAAAC
72159 AACAAAAAACAAAAAA-
1 AA-AAAAAA-AAAAAAC
* *
72175 AAACAAAAAAACAAC
1 AAAAAAAAAAAAAAC
*
72190 -AAAAAAAAAACAAC
1 AAAAAAAAAAAAAAC
72204 AAAAATAGAAAAAAAA
1 AAAAA-A-AAAAAAAA
72220 AGAAAAGAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
14 18 0.35
15 9 0.18
16 6 0.12
17 18 0.35
ACGTcount: A:0.86, C:0.12, G:0.01, T:0.01
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:72218 original size:11 final size:10
Alignment explanation
Indices: 72143--72230 Score: 90
Period size: 10 Copynumber: 8.6 Consensus size: 10
72133 ATTCTTTTTT
72143 AAAAAAAC--
1 AAAAAAACAA
72151 AAAAAAACAA
1 AAAAAAACAA
*
72161 CAAAAAACAA
1 AAAAAAACAA
72171 AAAAAAACAA
1 AAAAAAACAA
72181 AAAAACAACAAA
1 AAAAA-AAC-AA
72193 AAAAAAACAA
1 AAAAAAACAA
* *
72203 CAAAAATAGAA
1 -AAAAAAACAA
*
72214 AAAAAAAGAA
1 AAAAAAACAA
72224 AAGAAAA
1 AA-AAAA
72231 GAGCCTGCTT
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
8 8 0.12
10 36 0.52
11 18 0.26
12 7 0.10
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.01
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:72230 original size:22 final size:20
Alignment explanation
Indices: 72143--72230 Score: 83
Period size: 21 Copynumber: 4.3 Consensus size: 20
72133 ATTCTTTTTT
*
72143 AAAAAAACAAAAAAACAAC-
1 AAAAAAACAAAAAAAAAACA
72162 -AAAAAAC-AAAAAAAAACAA
1 AAAAAAACAAAAAAAAAAC-A
72181 AAAAACAACAAAAAAAAAACA
1 AAAAA-AACAAAAAAAAAACA
* * *
72202 ACAAAAATAGAAAAAAAAAGA
1 AAAAAAACA-AAAAAAAAACA
72223 AAAGAAAA
1 AAA-AAAA
72231 GAGCCTGCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
17 9 0.16
18 7 0.12
20 7 0.12
21 20 0.35
22 14 0.25
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.01
Consensus pattern (20 bp):
AAAAAAACAAAAAAAAAACA
Found at i:73370 original size:55 final size:55
Alignment explanation
Indices: 73305--73484 Score: 288
Period size: 55 Copynumber: 3.3 Consensus size: 55
73295 TTCAGCCTTC
* *
73305 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTAGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* **
73360 AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* * *
73415 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
73470 AGTCCTCAAAGAGCA
1 AGTCCTCAAAGAGCA
73485 TGATGCTCTT
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 114 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
Found at i:73620 original size:56 final size:56
Alignment explanation
Indices: 73553--73660 Score: 216
Period size: 56 Copynumber: 1.9 Consensus size: 56
73543 AGTGGGCACC
73553 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTT
73609 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
73661 CTTCCCAGTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (56 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTT
Found at i:73673 original size:197 final size:198
Alignment explanation
Indices: 73231--73895 Score: 843
Period size: 197 Copynumber: 3.3 Consensus size: 198
73221 GACACCTTTT
* * * *
73231 CCTTTTAAAGCCTACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGTAGGATGCTCTCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTCTTTCCTT
* * *
73296 TCAGCCTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTAGCACCTTTTA
66 TCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTC-AAGCCCAC--AAGTTGG--GCACC-TTTA
*
73361 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAG
125 GTCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAG
*
73426 AGCAGGATG
190 AGCAGGACG
* *
73435 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCATGATGCTCTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTCTTTCCTT
* *
73500 TCACCCTTTAGTCCTCAAAGAGCAAGATGGC-TTCAAGCCCACAAG-TGGGCACCTTTAGTCCTC
66 TCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAGCCCACAAGTTGGGCACCTTTAGTCCTC
*
73563 AAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTCCTCAAAGAGCAG
131 AAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTTTAGTCCTCAAAGAGCAG
73628 GACG
195 GACG
* **
73632 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGTAGGACACTCTCTT-C
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCAGGATGCTCT-TTCC
* * * *
73695 TTTCGCCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT
64 TTTCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTCAAG-CC-CACAAGTT-G-GGCAC-CTT
* **
73760 CTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAG
123 -TAGTCCTCAAAGAGTAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAG
73825 TCCTCAAAGAGCAGGACG
181 TCCTCAAAGAGCAGGACG
* * ** *
73843 CCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGA
73896 CGCCTCTTAA
Statistics
Matches: 410, Mismatches: 32, Indels: 31
0.87 0.07 0.07
Matches are distributed among these distances:
196 53 0.13
197 110 0.27
198 2 0.00
199 8 0.02
200 5 0.01
201 6 0.01
202 9 0.02
203 4 0.01
204 92 0.22
205 2 0.00
206 20 0.05
211 69 0.17
212 30 0.07
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (198 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTCTTTCCTT
TCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAGCCCACAAGTTGGGCACCTTTAGTCCTC
AAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGG
ACG
Found at i:73750 original size:150 final size:151
Alignment explanation
Indices: 73551--73841 Score: 449
Period size: 150 Copynumber: 1.9 Consensus size: 151
73541 CAAGTGGGCA
* *
73551 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTC
*
73616 CTCAAAGAGCAGGACG-CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAG
66 CTCAAAGAGCAGGACGTCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAAGAG
*
73680 TAGGACACTCTCTTCTTTCGC
131 CAGGACACTCTCTTCTTTCGC
* *
73701 CCTTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTC
* * *
73766 CTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCCTCA
66 CTCAAAGAGCAGGACG-----TCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCA
73831 AAGAGCAGGAC
126 AAGAGCAGGAC
73842 GCCTTTCAAA
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
150 76 0.60
156 50 0.40
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (151 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTC
CTCAAAGAGCAGGACGTCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAAGAG
CAGGACACTCTCTTCTTTCGC
Found at i:73846 original size:61 final size:60
Alignment explanation
Indices: 73726--74011 Score: 340
Period size: 55 Copynumber: 4.9 Consensus size: 60
73716 GAGCAGGATG
* *
73726 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC-TTT
*
73788 CCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
* *
73848 -C----AAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCC--T
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
* * * *
73901 -C--TTAAAGCCCACACAAGTTGGTGGCACTTCCCCGTCCTCAAAGAGCAGGGCGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTT-T
* * * * * *
73959 CATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA
74012 TGTTCTCTCC
Statistics
Matches: 198, Mismatches: 18, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
53 2 0.01
55 93 0.47
58 1 0.01
59 1 0.01
60 3 0.02
61 70 0.35
62 28 0.14
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (60 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
Found at i:73955 original size:110 final size:114
Alignment explanation
Indices: 73706--74011 Score: 352
Period size: 116 Copynumber: 2.6 Consensus size: 114
73696 TTCGCCCTTT
* * *
73706 AGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
* * *
73771 AGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCC
66 AGAGCAGGACGCC--TTCC-TTTAAAGCCCACACAAGTTAGTGGCACTTCCC
* *
73823 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTC-AGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
*
73887 AGAGCAGGACGCC-T-C-TTAAAGCCCACACAAGTTGGTGGCACTTCCC
66 AGAGCAGGACGCCTTCCTTTAAAGCCCACACAAGTTAGTGGCACTTCCC
* * * * * *
73933 CGTCCTCAAAGAGCAGGGCGCCTTCTCATTTTAAAGTCCACACAAGTTGGTAGCAC-TTCCCAGT
1 AGTCCTCAAAGAGCAGGACGCCTT-TC-----AAAGCCCACACAAGTTGGTGGCACTTTTCTAGT
*
73997 CCTCAAAGAGTAGGA
60 CCTCAAAGAGCAGGA
74012 TGTTCTCTCC
Statistics
Matches: 165, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
110 50 0.30
111 2 0.01
112 1 0.01
113 1 0.01
115 3 0.02
116 58 0.35
117 50 0.30
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (114 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
AGAGCAGGACGCCTTCCTTTAAAGCCCACACAAGTTAGTGGCACTTCCC
Found at i:74145 original size:327 final size:322
Alignment explanation
Indices: 73556--74222 Score: 1012
Period size: 327 Copynumber: 2.1 Consensus size: 322
73546 GGGCACCTTT
* * ***
73556 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATCTTCCCAGTCCTCAA
*
73621 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGAC
66 AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGAC
* * * * ** *
73686 ACTCTCTTCTTTCGCCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGT
131 ACTCTCTCCTTTCACCCTTTAGTACTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGAT
*
73751 GGCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGC
196 GGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGC
*
73816 ATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTC
261 ATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
*
73878 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCCGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATCTTCCCAGTCCTCAA
* *
73942 AGAGCAGGGCGCCTTCTCATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAG
66 AGAGCAGGACG----C-C-TTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAG
*** * *
74007 TAGGATGTTCTCTCCTTTCACCCTTTAGTACTCAAAGAGTAGGACATCTTTTAAAGCCCACACAA
125 TAGGACACTCTCTCCTTTCACCCTTTAGTACTCAAAGAGCAGGACACCTTTTAAAGCCCACACAA
* *
74072 GTTGATGGCACTTTTCTAGTTCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTT
190 GTTGATGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTT
* *
74137 GGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCATTT
255 AGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTT
*
74202 TTT
320 TTC
*
74205 AGTCCTCAAAGAGTAGGA
1 AGTCCTCAAAGAGCAGGA
74223 TGCTTTCTCC
Statistics
Matches: 310, Mismatches: 29, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
321 20 0.06
322 48 0.15
325 1 0.00
326 1 0.00
327 240 0.77
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (322 bp):
AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATCTTCCCAGTCCTCAA
AGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGAC
ACTCTCTCCTTTCACCCTTTAGTACTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGAT
GGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGC
ATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
Found at i:74209 original size:55 final size:55
Alignment explanation
Indices: 74032--74222 Score: 229
Period size: 55 Copynumber: 3.3 Consensus size: 55
74022 TTTCACCCTT
* * * *
74032 TAGTACTCAAAGAGTAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTC
* *
74088 TAGTTCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTC
1 TAGTCCTCAAAGAGCAGGACG-----T-CTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * *
74149 CAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTT
1 TAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
*
74204 TAGTCCTCAAAGAGTAGGA
1 TAGTCCTCAAAGAGCAGGA
74223 TGCTTTCTCC
Statistics
Matches: 117, Mismatches: 12, Indels: 13
0.82 0.08 0.09
Matches are distributed among these distances:
55 47 0.40
56 19 0.16
61 25 0.21
62 26 0.22
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (55 bp):
TAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:74211 original size:211 final size:206
Alignment explanation
Indices: 73827--74235 Score: 509
Period size: 211 Copynumber: 1.9 Consensus size: 206
73817 TTTTCCAGTC
* * * *
73827 CTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGC
1 CTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACTTTTCAGTCCTCAAAGAGC
* *
73892 AGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCCGTCCTCAAAGAGCAGGGCGCCTT
66 AGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG----
* *
73957 CTCATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATG-TTCTCTC
127 CTCATTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGCTT-TCTC
74021 CTTTCACCCTTTAGTA
191 CTTTCACCCTTTAGTA
* * * *
74037 CTCAAAGAGTAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTTCTCAAAGAG
1 CTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACTTTTC-AGTCCTCAAAGAG
* * *
74102 CAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
65 CAGGACGCC---T-C--TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGG
* * ***
74167 ACG-TC-TTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGTAGGATGCTTTC
124 ACGCTCATTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGCTTTC
74230 TCCTTT
189 TCCTTT
74236 TAAAGACCAC
Statistics
Matches: 171, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
210 44 0.26
211 75 0.44
212 4 0.02
214 1 0.01
215 1 0.01
217 46 0.27
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (206 bp):
CTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACTTTTCAGTCCTCAAAGAGC
AGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCA
TTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGCTTTCTCCTTTC
ACCCTTTAGTA
Found at i:75516 original size:1 final size:1
Alignment explanation
Indices: 75512--75600 Score: 79
Period size: 1 Copynumber: 89.0 Consensus size: 1
75502 ATTCTTTTTT
* * * * * * *
75512 AAAAAAACAAAAAAACAAAAAAAACAAAAAAAAAACAAAAAAAAACAAAAAAAATAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
75577 AAAAACAACAAAAACAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAA
75601 GAGAAAAGAA
Statistics
Matches: 66, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.01
Consensus pattern (1 bp):
A
Found at i:75540 original size:25 final size:24
Alignment explanation
Indices: 75512--75599 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 24
75502 ATTCTTTTTT
75512 AAAAAAACAAAAAAACAAAAAAAAC
1 AAAAAAA-AAAAAAACAAAAAAAAC
*
75537 --AAAAAAAAAACA-AAAAAAAAC
1 AAAAAAAAAAAAAACAAAAAAAAC
*
75558 AAAAAAAATAAAAACAAAAAAAAAC
1 AAAAAAAAAAAAAAC-AAAAAAAAC
75583 AACAAAAACAGAAAAAA
1 AA-AAAAA-A-AAAAAA
75600 AGAGAAAAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
21 9 0.17
22 6 0.12
23 15 0.29
25 11 0.21
26 5 0.10
27 1 0.02
28 5 0.10
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.01
Consensus pattern (24 bp):
AAAAAAAAAAAAAACAAAAAAAAC
Found at i:75591 original size:19 final size:19
Alignment explanation
Indices: 75520--75600 Score: 96
Period size: 19 Copynumber: 4.3 Consensus size: 19
75510 TTAAAAAAAC
*
75520 AAAAAAACAAAAAAAAC-A
1 AAAAAAACAACAAAAACAA
75538 AAAAAAA-AACAAAAA-AA
1 AAAAAAACAACAAAAACAA
* *
75555 AACAAAAAAAATAAAAACAA
1 AA-AAAAACAACAAAAACAA
75575 AAAAAAACAACAAAAACAGA
1 AAAAAAACAACAAAAACA-A
75595 AAAAAA
1 AAAAAA
75601 GAGAAAAGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
17 10 0.19
18 12 0.22
19 21 0.39
20 11 0.20
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.01
Consensus pattern (19 bp):
AAAAAAACAACAAAAACAA
Found at i:75599 original size:10 final size:9
Alignment explanation
Indices: 75512--75600 Score: 96
Period size: 9 Copynumber: 9.8 Consensus size: 9
75502 ATTCTTTTTT
75512 AAAAAAAC-
1 AAAAAAACA
75520 AAAAAAACA
1 AAAAAAACA
75529 AAAAAAACA
1 AAAAAAACA
75538 AAAAAAA-A
1 AAAAAAACA
75546 ACAAAAAA-A
1 A-AAAAAACA
75555 AACAAAAA-A
1 AA-AAAAACA
75564 AATAAAAACAA
1 AA-AAAAAC-A
75575 AAAAAAACA
1 AAAAAAACA
*
75584 ACAAAAACA
1 AAAAAAACA
75593 GAAAAAAA
1 -AAAAAAA
75601 GAGAAAAGAA
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
8 11 0.15
9 46 0.64
10 12 0.17
11 3 0.04
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.01
Consensus pattern (9 bp):
AAAAAAACA
Found at i:76752 original size:55 final size:55
Alignment explanation
Indices: 76687--76866 Score: 288
Period size: 55 Copynumber: 3.3 Consensus size: 55
76677 TTCAGCCTTC
* *
76687 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTAGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* **
76742 AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* * *
76797 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
76852 AGTCCTCAAAGAGCA
1 AGTCCTCAAAGAGCA
76867 TGATGCTCTT
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 114 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
Found at i:76892 original size:149 final size:150
Alignment explanation
Indices: 76734--77016 Score: 460
Period size: 149 Copynumber: 1.9 Consensus size: 150
76724 AAGTTGGTAG
* * * **
76734 CACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAG
1 CACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
*
76799 TCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTCTAGTCCTCAAAG
66 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATCCTTCTAGTCCTCAAAG
76863 AGCATGATGCTCTTTCCTTT
131 AGCATGATGCTCTTTCCTTT
* *
76883 CACCCTTTAGTCCTCAAAGAGCAAGATGGCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 CACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
** *
76948 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTCCTCAAAG
66 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATCCTTCTAGTCCTCAAAG
77013 AGCA
131 AGCA
77017 GGACGCCTTT
Statistics
Matches: 122, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
149 104 0.85
150 18 0.15
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (150 bp):
CACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATCCTTCTAGTCCTCAAAG
AGCATGATGCTCTTTCCTTT
Found at i:76966 original size:204 final size:203
Alignment explanation
Indices: 76613--77285 Score: 961
Period size: 204 Copynumber: 3.3 Consensus size: 203
76603 GACACCTTTT
* * *
76613 CCTTTTAAAGCCTACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGTAGGATGCTCTCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCTAGTCCTCAAAGAGCAGGATGCTCTTTCCTT
* * * * *
76678 TCAGCCTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTAGCACCTTTTA
65 TCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTA
76743 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAG
130 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAG
*
76808 AGCAGGATG
195 AGCAGGACG
*
76817 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCATGATGCTCTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCTAGTCCTCAAAGAGCAGGATGCTCTTTCCTT
* *
76882 TCACCCTTTAGTCCTCAAAGAGCAAGATGGCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTA
65 TCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTA
* *
76947 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTCCTCAAA
130 GTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTTAGTCCTCAAA
77012 GAGCAGGACG
194 GAGCAGGACG
* * **
77022 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACACTCTCTT-CT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTT-CTAGTCCTCAAAGAGCAGGATGCTCT-TTCCT
* * * *
77086 TTCGCCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
64 TTCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-
* **
77151 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGT
128 TAGTCCTCAAAGAGTAGGACGCC-TTT-C----AAAGCCCACACAAGTTGGTGGCATTTTTTAGT
77216 CCTCAAAGAGCAGGACG
187 CCTCAAAGAGCAGGACG
* * * *
77233 CCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCT-AGTCCTCAAAGAGCAGGA
77286 CGGCTCTTAA
Statistics
Matches: 422, Mismatches: 36, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
204 168 0.40
205 135 0.32
206 24 0.06
207 3 0.01
211 70 0.17
212 22 0.05
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (203 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTAGTCCTCAAAGAGCAGGATGCTCTTTCCTTT
CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
TCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGA
GCAGGACG
Found at i:77020 original size:56 final size:55
Alignment explanation
Indices: 76883--77075 Score: 271
Period size: 55 Copynumber: 3.5 Consensus size: 55
76873 TCTTTCCTTT
* * * * *
76883 CACCCTTTAGTCCTCAAAGAGCAAGATGGCTTTCAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
76938 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
**
76993 CATTTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
1 CA-CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
** *
77049 CA-CTTCCCAGTCCTCAAAGAGTAGGAC
1 CACCTT-TTAGTCCTCAAAGAGCAGGAC
77076 ACTCTCTTCT
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
54 2 0.02
55 70 0.56
56 53 0.42
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (55 bp):
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:77112 original size:150 final size:151
Alignment explanation
Indices: 76943--77231 Score: 445
Period size: 150 Copynumber: 1.9 Consensus size: 151
76933 GGTGGCACCT
* *
76943 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
* *
77008 CAAAGAGCAGGACG-CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTA
66 CAAAGAGCAGGACGTCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAAGAGCA
77072 GGACACTCTCTTCTTTCGCCC
131 GGACACTCTCTTCTTTCGCCC
* *
77093 TTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
* * *
77158 CAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCCTCAAA
66 CAAAGAGCAGGACG-----TCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAA
77223 GAGCAGGAC
126 GAGCAGGAC
77232 GCCTTTCAAA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
150 74 0.60
156 50 0.40
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (151 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
CAAAGAGCAGGACGTCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTCAAAGAGCA
GGACACTCTCTTCTTTCGCCC
Found at i:77236 original size:61 final size:60
Alignment explanation
Indices: 77116--77401 Score: 340
Period size: 55 Copynumber: 4.9 Consensus size: 60
77106 GAGCAGGATG
* *
77116 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC-TTT
*
77178 CCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
* * *
77238 -C----AAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGGC--T
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
* * *
77291 -C--TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGGCGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTT-T
* * * * * *
77349 CATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA
77402 TGTTCTCTCC
Statistics
Matches: 198, Mismatches: 18, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
53 2 0.01
55 92 0.46
58 1 0.01
59 1 0.01
60 3 0.02
61 71 0.36
62 28 0.14
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (60 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
Found at i:77345 original size:110 final size:114
Alignment explanation
Indices: 77096--77401 Score: 352
Period size: 116 Copynumber: 2.6 Consensus size: 114
77086 TTCGCCCTTT
* * *
77096 AGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
* * *
77161 AGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCC
66 AGAGCAGGACGCC--TTCC-TTTAAAGCCCACACAAGTTAGTGGCACTTCCC
* *
77213 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTC-AGTCCTCAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
* *
77277 AGAGCAGGACGGC-T-C-TTAAAGCCCACACAAGTTGGTGGCACTTCCC
66 AGAGCAGGACGCCTTCCTTTAAAGCCCACACAAGTTAGTGGCACTTCCC
* * * * *
77323 AGTCCTCAAAGAGCAGGGCGCCTTCTCATTTTAAAGTCCACACAAGTTGGTAGCAC-TTCCCAGT
1 AGTCCTCAAAGAGCAGGACGCCTT-TC-----AAAGCCCACACAAGTTGGTGGCACTTTTCTAGT
*
77387 CCTCAAAGAGTAGGA
60 CCTCAAAGAGCAGGA
77402 TGTTCTCTCC
Statistics
Matches: 165, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
110 51 0.31
111 2 0.01
112 1 0.01
113 1 0.01
115 3 0.02
116 57 0.35
117 50 0.30
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (114 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
AGAGCAGGACGCCTTCCTTTAAAGCCCACACAAGTTAGTGGCACTTCCC
Found at i:77480 original size:327 final size:321
Alignment explanation
Indices: 76891--77612 Score: 1077
Period size: 327 Copynumber: 2.2 Consensus size: 321
76881 TTCACCCTTT
* * * *
76891 AGTCCTCAAAGAGCAAGATGGCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTAGTCCTCAAA
* * ***
76956 GAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTTAGTCCTCAAAGAGCAGGAC
65 GAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATCTTCCCAGTCCTCAAAGAGCAGGAC
* *
77021 GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACACTCTCTTCT
130 GCCTTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGACACTCTCTCCT
* * ** *
77086 TTCGCCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
195 TTCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCACTTTTC
*
77151 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCC
260 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCC
*
77213 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTT-AGTCCTCAAA
* *
77278 GAGCAGGACGGCTCTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGGC
65 GAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATCTTCCCAGTCCTCAAAGAGCAGGAC
* ***
77342 GCCTTCTCATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGTTC
130 G----C-C-TTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGACACTC
* *
77407 TCTCCTTTCACCCTTTAGTCCTCAAAGAGTAGGACATCTTTTAAAGCCCACACAAGTTGATGGCA
189 TCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCA
* * *
77472 CTTTTCTAGTTCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCATTT
254 CTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTT
77537 TCC
319 TCC
*
77540 AGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTAGTCCTCAAA
*
77605 GAGTAGGA
65 GAGCAGGA
77613 TGCTTTCTCC
Statistics
Matches: 360, Mismatches: 32, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
321 25 0.07
322 92 0.26
325 1 0.00
326 1 0.00
327 236 0.66
328 5 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (321 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTAGTCCTCAAAG
AGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATCTTCCCAGTCCTCAAAGAGCAGGACG
CCTTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGACACTCTCTCCTT
TCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCT
AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCC
Found at i:77551 original size:156 final size:155
Alignment explanation
Indices: 77268--77557 Score: 418
Period size: 156 Copynumber: 1.9 Consensus size: 155
77258 GGCATTTTTC
* *
77268 AGTCCTCAAAGAGCAGGACGGCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACAGCTCTTAAAGCCCACACAAGTTGATGGCACTTCCCAGTCCTCAAA
* * *
77333 GAGCAGGGCGCCTTCTCATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGT
66 GAGCAGGACGCCTTCTCATTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGC
77398 AGGATGTTCTCTCCTTTCACCCTTT
131 AGGATGTTCTCTCCTTTCACCCTTT
* * * * * *
77423 AGTCCTCAAAGAGTAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTTCTCAA
1 AGTCCTCAAAGAGCAGGACAGCTCTTAAAGCCCACACAAGTTGATGGCAC-TTCCCAGTCCTCAA
* * * * * *
77488 AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAG
65 AGAGCAGGACGCCTTCTCATTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAG
77553 CAGGA
130 CAGGA
77558 CGTCTTTCAA
Statistics
Matches: 117, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
155 45 0.38
156 72 0.62
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (155 bp):
AGTCCTCAAAGAGCAGGACAGCTCTTAAAGCCCACACAAGTTGATGGCACTTCCCAGTCCTCAAA
GAGCAGGACGCCTTCTCATTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGC
AGGATGTTCTCTCCTTTCACCCTTT
Found at i:77599 original size:55 final size:55
Alignment explanation
Indices: 77422--77612 Score: 238
Period size: 55 Copynumber: 3.3 Consensus size: 55
77412 TTTCACCCTT
* * *
77422 TAGTCCTCAAAGAGTAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTC
* *
77478 TAGTTCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTC
1 TAGTCCTCAAAGAGCAGGACG-----T-CTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * *
77539 CAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTT
1 TAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
*
77594 TAGTCCTCAAAGAGTAGGA
1 TAGTCCTCAAAGAGCAGGA
77613 TGCTTTCTCC
Statistics
Matches: 117, Mismatches: 12, Indels: 13
0.82 0.08 0.09
Matches are distributed among these distances:
55 47 0.40
56 19 0.16
61 25 0.21
62 26 0.22
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (55 bp):
TAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:77607 original size:211 final size:206
Alignment explanation
Indices: 77213--77625 Score: 517
Period size: 211 Copynumber: 2.0 Consensus size: 206
77203 GGCATTTTCC
* * * *
77213 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACTTTTCAGTCCTCAAA
* *
77278 GAGCAGGACGGCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGGCG
66 GAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
* *
77343 CCTTCTCATTTTAAAGTCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATG-TTC
131 ----CTCATTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGCTT-
77407 TCTCCTTTCACCCTTT
191 TCTCCTTTCACCCTTT
* * * *
77423 AGTCCTCAAAGAGTAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTTCTCAA
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACTTTTC-AGTCCTCAA
* * *
77488 AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAG
65 AGAGCAGGACGCC---T-C--TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAG
* * ***
77553 CAGGACG-TC-TTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGTAGGATGC
124 CAGGACGCTCATTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGC
77616 TTTCTCCTTT
189 TTTCTCCTTT
77626 TAAAGACCAC
Statistics
Matches: 175, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
210 48 0.27
211 74 0.42
212 4 0.02
214 1 0.01
215 1 0.01
217 47 0.27
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (206 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCACTTTTCAGTCCTCAAA
GAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
CTCATTTCAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTCAAAGAGTAGGATGCTTTCTCC
TTTCACCCTTT
Found at i:78906 original size:1 final size:1
Alignment explanation
Indices: 78902--78989 Score: 77
Period size: 1 Copynumber: 88.0 Consensus size: 1
78892 ATTCTTTTTT
* * * * * * *
78902 AAAAAAACAAAAAAACAAAAAAAACAAAAAAAAAAACAAAAAAACAAAAAAAATAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
78967 AAAACAACAAAAACAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAA
78990 GAGAAAAGAA
Statistics
Matches: 65, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.01
Consensus pattern (1 bp):
A
Found at i:78915 original size:8 final size:8
Alignment explanation
Indices: 78902--78988 Score: 92
Period size: 8 Copynumber: 10.9 Consensus size: 8
78892 ATTCTTTTTT
78902 AAAAAAAC
1 AAAAAAAC
78910 AAAAAAAC
1 AAAAAAAC
78918 -AAAAAA-
1 AAAAAAAC
*
78924 AACAAAA-
1 AAAAAAAC
78931 AAAAAAAC
1 AAAAAAAC
78939 AAAAAAAC
1 AAAAAAAC
78947 AAAAAAA-
1 AAAAAAAC
*
78954 ATAAAAACAA
1 A-AAAAA-AC
78964 AAAAAAAC
1 AAAAAAAC
78972 AACAAAAAC
1 AA-AAAAAC
78981 AGAAAAAA
1 A-AAAAAA
78989 AGAGAAAAGA
Statistics
Matches: 69, Mismatches: 3, Indels: 13
0.81 0.04 0.15
Matches are distributed among these distances:
7 18 0.26
8 31 0.45
9 18 0.26
10 2 0.03
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (8 bp):
AAAAAAAC
Found at i:78916 original size:9 final size:9
Alignment explanation
Indices: 78902--78989 Score: 94
Period size: 9 Copynumber: 9.8 Consensus size: 9
78892 ATTCTTTTTT
78902 AAAAAAAC-
1 AAAAAAACA
78910 AAAAAAACA
1 AAAAAAACA
78919 AAAAAAACA
1 AAAAAAACA
78928 AAAAAAA-A
1 AAAAAAACA
78936 AACAAAAA-A
1 AA-AAAAACA
78945 ACAAAAAA-A
1 A-AAAAAACA
*
78954 ATAAAAACAA
1 AAAAAAAC-A
78964 AAAAAAACA
1 AAAAAAACA
*
78973 ACAAAAACA
1 AAAAAAACA
78982 GAAAAAAA
1 -AAAAAAA
78990 GAGAAAAGAA
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
8 16 0.23
9 39 0.56
10 15 0.21
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.01
Consensus pattern (9 bp):
AAAAAAACA
Found at i:78941 original size:29 final size:29
Alignment explanation
Indices: 78902--78979 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 29
78892 ATTCTTTTTT
78902 AAAAAAACAAAAAAACAAAAAAAACAAAA
1 AAAAAAACAAAAAAACAAAAAAAACAAAA
*
78931 AAAAAAACAAAAAAACAAAAAAAATAAAA
1 AAAAAAACAAAAAAACAAAAAAAACAAAA
* *
78960 ACAAAAA-AAAACAACAAAAA
1 AAAAAAACAAAAAAACAAAAA
78980 CAGAAAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 12 0.26
29 34 0.74
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.01
Consensus pattern (29 bp):
AAAAAAACAAAAAAACAAAAAAAACAAAA
Found at i:80091 original size:39 final size:39
Alignment explanation
Indices: 80037--80135 Score: 198
Period size: 39 Copynumber: 2.5 Consensus size: 39
80027 GGCACCTTAT
80037 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAGCCTTC
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAGCCTTC
80076 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAGCCTTC
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAGCCTTC
80115 AGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
80136 CTTTCAAAGC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 60 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.22
Consensus pattern (39 bp):
AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAGCCTTC
Found at i:80180 original size:55 final size:55
Alignment explanation
Indices: 80115--80294 Score: 288
Period size: 55 Copynumber: 3.3 Consensus size: 55
80105 TTCAGCCTTC
* *
80115 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTAGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* **
80170 AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* * *
80225 AGTCCTCAAAGAGCAGGACGGCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
80280 AGTCCTCAAAGAGCA
1 AGTCCTCAAAGAGCA
80295 TGATGCTCTC
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 114 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
Found at i:80350 original size:149 final size:148
Alignment explanation
Indices: 80162--81260 Score: 782
Period size: 149 Copynumber: 6.9 Consensus size: 148
80152 AAGTTGGTAG
* * *
80162 CACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTAG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAG
* *
80227 TCCTCAAAGAGCAGGACGGCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGA
66 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGA
* * *
80292 GCATGATGCTCTCTCCTTT
130 GTAGGACGCTCTCTCCTTT
* * * *
80311 CACCCTTTAGTCCTCAAAGAGCAAGATGGCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TA
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTA
*
80375 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCGCACAAGTTGGTGGCACTTCCCAGTCCTCAAAG
65 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAG
* * *
80440 AGTAGGACACTCTTTTCTTT
129 AGTAGGACGCTCTCTCCTTT
* * * *
80460 CGCCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTA
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTA
* * *
80525 GTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCC
65 GTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCC
* *
80590 TCAAAGAGTAGGACGCCTTTCAAAGCCCATACAAGTTGGT
123 TCAAAGAGTAGGACG-C--T-----CTC-T-C--CTT--T
** ** * * * *
80630 GGCATTTTCCAGTCCTCAAAGAGTAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACTTCC
1 CACCCTTT--AGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * *
80694 CAGTCCTCAAAGAGCAGGGTGCCTTCTCTTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTC
63 TAGTCCTCAAAGAGCA--G-GAC-GC-CTTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTC
* *
80759 CTTAAAGAGTAGGATGCTCTCTCCTTT
122 CTCAAAGAGTAGGACGCTCTCTCCTTT
** * *
80786 CACCCTTTAGTCCTCAAAGAGCAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTA
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTA
* * *
80851 GTCCTCAAAGAGCAGGACGCCATTTCCTTTTAAAGGCCACATAAGTTGGTGGCATTTTCCAGTCC
65 GTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCC
* * *
80916 TCAAAGAGCAGAACGCCTTTCAAAGTCCACACAAGTTGGT
123 TCAAAGAGTAGGACG-C--TC----T-CTC-C---TT--T
*** * * * * * *
80956 GGCATTTTTTAGTCCTCAAAGAGTAGGATGCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGCA
1 --CACCCTTTAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * * *
81021 CCTTCTAGTCCTCAAAGAGTAGGACACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACGTC
58 TTTTCTAGTCCTCAAAGAGCAGGACGC---CT-TTT--AAAGCCCACACAAGTTGGTGGCAC-TT
* * * *
81086 CCAATCCTCAAAGAGCAGAATAG-TCTCTCCTTT
116 CCAGTCCTCAAAGAGTAGGA-CGCTCTCTCCTTT
* * * *
81119 CGCCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAA
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAG
* * * *
81184 TCCTCAAATAGTAAGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
66 TCCTCAAAGAGCAGGACGC---CT-TTT--AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCT
*
81249 TAAAGAGTAGGA
124 CAAAGAGTAGGA
81261 TGCCTTTTCT
Statistics
Matches: 763, Mismatches: 114, Indels: 140
0.75 0.11 0.14
Matches are distributed among these distances:
148 3 0.00
149 182 0.24
150 23 0.03
152 2 0.00
153 3 0.00
154 43 0.06
155 115 0.15
156 97 0.13
157 7 0.01
158 2 0.00
159 3 0.00
160 1 0.00
161 22 0.03
162 2 0.00
163 2 0.00
164 3 0.00
165 4 0.01
167 1 0.00
168 5 0.01
169 6 0.01
170 54 0.07
171 18 0.02
172 64 0.08
173 3 0.00
174 6 0.01
175 3 0.00
177 63 0.08
178 26 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (148 bp):
CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAG
TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAG
TAGGACGCTCTCTCCTTT
Found at i:80376 original size:55 final size:55
Alignment explanation
Indices: 80311--80441 Score: 174
Period size: 55 Copynumber: 2.4 Consensus size: 55
80301 TCTCTCCTTT
* * *
80311 CACCCTTTAGTCCTCAAAGAGCAAGATGGCTTTCAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * *
80366 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCGCACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG
**
80421 CA-CTTCCCAGTCCTCAAAGAG
1 CACCTT-TTAGTCCTCAAAGAG
80442 TAGGACACTC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 3 0.04
55 64 0.96
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (55 bp):
CACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG
Found at i:80435 original size:204 final size:203
Alignment explanation
Indices: 80071--80447 Score: 592
Period size: 204 Copynumber: 1.9 Consensus size: 203
80061 CTCCTTTCAG
* *
80071 CCTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAGCCTTCAGTCCTCAAAGAGCAGGACGC
1 CCTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTCAGTCCTCAAAGAGCAAGACGC
* *
80136 CTTTCAAAGCCCACATAAGTTGGTAGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGC
66 CTTTCAAAGCCCACACAAGTTGGTAGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
* ***
80201 CCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGACGGCTTTTAAAGCCCACACAAGT
131 CCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGGCTTTTAAAGCCCACACAAGT
80266 TGGTGGCA
196 TGGTGGCA
* * * *
80274 CCTTCTAGTCCTCAAAGAGCATGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGATG
1 CCTTC-AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTCAGTCCTCAAAGAGCAAGACG
* * *
80339 GCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
65 CCTTTCAAAGCCCACACAAGTTGGTAGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* *
80404 CCCGCACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGAC
130 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGAC
80448 ACTCTTTTCT
Statistics
Matches: 156, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
203 5 0.03
204 151 0.97
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (203 bp):
CCTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTCAGTCCTCAAAGAGCAAGACGC
CTTTCAAAGCCCACACAAGTTGGTAGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
CCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGGCTTTTAAAGCCCACACAAGT
TGGTGGCA
Found at i:80469 original size:94 final size:94
Alignment explanation
Indices: 80371--80550 Score: 290
Period size: 94 Copynumber: 1.9 Consensus size: 94
80361 GGTGGCACCT
*
80371 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCGCACAAGTTGGTGGCAC-TTCCCAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCCAGTCCT
80435 CAAAGAGTAGGACACTCTTTTCTTTCGCCC
66 CAAAGAGTAGGACAC-CTTTTCTTTCGCCC
* * * *
80465 TTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCCAGTCCT
*
80530 CAAAGAGTAGGACGCCTTTTC
66 CAAAGAGTAGGACACCTTTTC
80551 CTTTTAAAGC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
94 56 0.71
95 23 0.29
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (94 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCCAGTCCT
CAAAGAGTAGGACACCTTTTCTTTCGCCC
Found at i:80743 original size:60 final size:60
Alignment explanation
Indices: 80489--80772 Score: 354
Period size: 55 Copynumber: 4.9 Consensus size: 60
80479 AGCAGGATGC
* *
80489 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCCAGTCCTCAAAGAGTAGGACGCCTTCT
* *
80550 CCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCCTCAAAGAGTAGGACGCCTT-T
1 -CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACGCCTTCT
* * *
80610 C----AAAGCCCATACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGAC-AC--CT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACGCCTTCT
* * **
80663 C--TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGGTGCCTTCT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACGCCTTCT
* * *
80721 CTTTTAAAGCCCACACAAGTTGGTAGCACTTCCCAGTCCTTAAAGAGTAGGA
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGA
80773 TGCTCTCTCC
Statistics
Matches: 197, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
53 2 0.01
54 1 0.01
55 88 0.45
56 1 0.01
58 3 0.02
59 1 0.01
60 46 0.23
61 28 0.14
62 27 0.14
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (60 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACGCCTTCT
Found at i:80907 original size:326 final size:325
Alignment explanation
Indices: 80345--81316 Score: 1201
Period size: 326 Copynumber: 3.0 Consensus size: 325
80335 GATGGCTTTC
* * *
80345 AAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCA--GGAC-GC-CTTTTAAAGCC
1 AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGGGCCTTCTCTTTTAAAGCC
* ** * *
80406 CGCACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACACTCTTTTCTTTCGCCCTTTAGT
66 CACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGATGCTCTCTCCTTTCGCCCTTTAGT
* *
80471 CCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGA
131 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGA
*
80536 GTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCAGTCCTCAAAGAGTAG
196 GTAGGACGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAG
*
80601 GACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGA-CACCTCT
260 GACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGATCACCTCT
80665 T
325 T
*
80666 AAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGGTGCCTTCTCTTTTAAAG
1 AAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGG-GCCTTCTCTTTTAAAG
* * *
80730 CCCACACAAGTTGGTAGCACTTCCCAGTCCTTAAAGAGTAGGATGCTCTCTCCTTTCACCCTTTA
64 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGATGCTCTCTCCTTTCGCCCTTTA
** *
80795 GTCCTCAAAGAGCAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAAA
129 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAA
* * * *
80860 GAGCAGGACGCCATTTCCTTTTAAAGGCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGC
194 GAGTAGGACGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGT
* * **
80925 AGAACGCCTTTCAAAGTCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGTAGGATGCTTT
258 AGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGA-----T
* *
80990 CTCCTTTT
318 CACCTCTT
* * * * * *
80998 AAAGACCACTCGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGTA-GGACACTTTCTCTTTGCAAA
1 AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGGGC-C-TTCTCTTT-TAAA
* * * *
81062 GCCCACACAAGTTGGTGGCACGTCCCAATCCTCAAAGAGCAGAATAG-TCTCTCCTTTCGCCCTT
63 GCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGAT-GCTCTCTCCTTTCGCCCTT
* *
81126 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAATCCTCA
127 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCA
* * * * ** *
81190 AATAGTAAGATG-CTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTTAAAG
192 AAGAGTAGGACGCCTTTC-CTTT-TAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAG
* * * *
81254 AGTAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGTCCTTAAAGAG
255 AGTAGGACG-C----C-TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAG
81317 CAAAATGCCT
Statistics
Matches: 560, Mismatches: 65, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
320 3 0.01
321 38 0.07
323 1 0.00
324 2 0.00
325 1 0.00
326 239 0.43
330 5 0.01
331 8 0.01
332 110 0.20
333 109 0.19
334 1 0.00
337 1 0.00
338 38 0.07
339 4 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (325 bp):
AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGGGCCTTCTCTTTTAAAGCC
CACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGATGCTCTCTCCTTTCGCCCTTTAGT
CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGA
GTAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGG
ACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGATCACCTCTT
Found at i:80932 original size:61 final size:60
Alignment explanation
Indices: 80793--81081 Score: 285
Period size: 61 Copynumber: 4.9 Consensus size: 60
80783 TTTCACCCTT
* *
80793 TAGTCCTCAAAGAGCAGGA---C-AT-CTTTTAAAGCCCACACAAGTTGATGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTC
* *
80849 TAGTCCTCAAAGAGCAGGACGCCATTTCCTTTTAAAGGCCACATAAGTTGGTGGCATTTTC
1 TAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * * *
80910 CAGTCCTCAAAGAGCAGAACGCCTTT-C----AAAGTCCACACAAGTTGGTGGCATTTTT
1 TAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * * * * * **
80965 TAGTCCTCAAAGAGTAGGATGCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGCACCTTC
1 TAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * *
81026 TAGTCCTCAAAGAGTAGGAC-ACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCA
1 TAGTCCTCAAAGAGCAGGACGCCTTTC-CTTT-TAAAGCCCACACAAGTTGGTGGCA
81082 CGTCCCAATC
Statistics
Matches: 192, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
55 45 0.23
56 20 0.10
57 1 0.01
59 4 0.02
60 9 0.05
61 88 0.46
62 25 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:81017 original size:116 final size:117
Alignment explanation
Indices: 80794--81082 Score: 332
Period size: 116 Copynumber: 2.4 Consensus size: 117
80784 TTCACCCTTT
* * * *
80794 AGTCCTCAAAGAGCAGGACATCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGCAGAACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
* **
80859 AGAGCAGGACGCCATTTCCTTTTAAAGGCCACATAAGTTGGTGGCATTTTCC
66 AGAGCAGGACGCCATTTCCTTTTAAAGACCACATAAGTTGGTGGCACCTTCC
* * *
80911 AGTCCTCAAAGAGCAGAACGCCTTTCAAAGTCCACACAAGTTGGTGGCA-TTTTTTAGTCCTCAA
1 AGTCCTCAAAGAGCAGAACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
* * * * *
80975 AGAGTAGGATG-CTTTCTCCTTTTAAAGACCAC-TCGAGTTGGTGGCACCTTCT
66 AGAGCAGGACGCCATT-TCCTTTTAAAGACCACAT-AAGTTGGTGGCACCTTCC
* *
81027 AGTCCTCAAAGAGTAGGACACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCAC
1 AGTCCTCAAAGAGCA-GA-AC--AC-CTTT-CAAAGCCCACACAAGTTGGTGGCAC
81083 GTCCCAATCC
Statistics
Matches: 145, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
115 4 0.03
116 66 0.46
117 45 0.31
118 2 0.01
120 1 0.01
121 4 0.03
122 23 0.16
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (117 bp):
AGTCCTCAAAGAGCAGAACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
AGAGCAGGACGCCATTTCCTTTTAAAGACCACATAAGTTGGTGGCACCTTCC
Found at i:81263 original size:61 final size:61
Alignment explanation
Indices: 81153--81330 Score: 232
Period size: 61 Copynumber: 2.9 Consensus size: 61
81143 GACGCCTTTT
* * * *
81153 AAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAATAGTAAGATG-CTTTCTCTTTGC
1 AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTTAAAGAGTAAGATGCCTTT-TCTTTGC
* * *
81214 AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTTAAAGAGTAGGATGCCTTTTCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTTAAAGAGTAAGATGCCTTTTCTTTGC
* ** * *
81275 AAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTTAAAGAGCAAAATGCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTTAAAGAGTAAGATGCCTTTTC
81331 CTTTTCTCCT
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 98 0.96
62 4 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (61 bp):
AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTTAAAGAGTAAGATGCCTTTTCTTTGC
Found at i:81317 original size:216 final size:216
Alignment explanation
Indices: 80911--81360 Score: 570
Period size: 216 Copynumber: 2.1 Consensus size: 216
80901 GGCATTTTCC
* * ** *
80911 AGTCCTCAAAGAGCAGAACGCCTTTCAAAGTCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAA
* * * * *
80976 GAGTAGGATGCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGT
66 GAGTAAGATGCTTTCTCCTTTCAAAGACCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGT
*
81041 AGGACACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACGTCCCAATCCTCAAAGAGCAGAA
131 AGGACACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACGTCCCAATCCTCAAAGAGCAAAA
*
81106 TAGTC-TCTCC-TTTCGCCCTTT
196 T-GCCTTCTCCTTTTC-CCCTTT
*
81127 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAA
* * *
81192 TAGTAAGATGCTTTCT-CTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTTAAAGAG
66 GAGTAAGATGCTTTCTCCTTT-CAAAGACCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAG
* * * *** * *
81256 TAGGATGC-CTTT-TCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTTAAAGAGCA
130 TAGGA--CACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACGTCCCAATCCTCAAAGAGCA
* *
81319 AAATGCCTTTTCCTTTTCTCCTTT
193 AAATGCCTTCTCCTTTTCCCCTTT
*
81343 -GTCCTCAATGAGCAGGAC
1 AGTCCTCAAAGAGCAGGAC
81361 ACACTTCATT
Statistics
Matches: 202, Mismatches: 27, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
215 23 0.11
216 170 0.84
217 8 0.04
218 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (216 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAA
GAGTAAGATGCTTTCTCCTTTCAAAGACCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGT
AGGACACTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACGTCCCAATCCTCAAAGAGCAAAA
TGCCTTCTCCTTTTCCCCTTT
Found at i:81447 original size:87 final size:86
Alignment explanation
Indices: 81326--81490 Score: 219
Period size: 87 Copynumber: 1.9 Consensus size: 86
81316 GCAAAATGCC
* *
81326 TTTTCCTTTTCTCCTTTGTCCTCAATGAGCAGGACACACTTCA-TTCCCTTCTTTTCCCTTTTGT
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGAAGGACACACTTCATTTCCCTT-TTTT-CC-TTTGT
81390 CCTC-AAAGAGCAGGACACACTTTA
63 CCTCGAAA-AGCAGGACACACTTTA
* * * *
81414 TTTTCCTTTT-TCTTTTGTCCTCAAAGAGAAGGACGCATTTCATTTTCCTTTTTTCCTTTGTCCT
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGAAGGACACACTTCATTTCCCTTTTTTCCTTTGTCCT
81478 CGAAAAGCAGGAC
66 CGAAAAGCAGGAC
81491 GTACTCTTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 17 0.25
86 5 0.07
87 31 0.45
88 16 0.23
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.41
Consensus pattern (86 bp):
TTTTCCTTTTCTCCTTTGTCCTCAAAGAGAAGGACACACTTCATTTCCCTTTTTTCCTTTGTCCT
CGAAAAGCAGGACACACTTTA
Found at i:81490 original size:43 final size:42
Alignment explanation
Indices: 81326--81599 Score: 195
Period size: 42 Copynumber: 6.6 Consensus size: 42
81316 GCAAAATGCC
* * *
81326 TTTTCCTTTTCTCCTTTGTCCTCAATGAGCAGGACACACTTCA
1 TTTTCCTTTTTTCCTTTGTCCTCAA-AAGCAGGACACATTTCA
*
81369 -TTCCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACACACTTT-A
1 TTTTCCTT-TTTT-CC-TTTGTCCTCAAA-AGCAGGACACA-TTTCA
* * *
81414 TTTTCC-TTTTTCTTTTGTCCTCAAAGAGAAGGACGCATTTCA
1 TTTTCCTTTTTTCCTTTGTCCTCAAA-AGCAGGACACATTTCA
*
81456 TTTTCCTTTTTTCCTTTGTCCTCGAAAAGCAGG--AC--GT-A
1 TTTTCCTTTTTTCCTTTGTCCTC-AAAAGCAGGACACATTTCA
* *
81494 --CT-CTTTTTTCACTTTGTCCTCAAGAAGCAGGACAC-TTTCC
1 TTTTCCTTTTTTC-CTTTGTCCTCAA-AAGCAGGACACATTTCA
* * *
81534 TTTT-CTTTCTTT-CTTTGTCCTCAAGGAGCAAGACCCATTTCA
1 TTTTCCTTT-TTTCCTTTGTCCTCAA-AAGCAGGACACATTTCA
*
81576 --TT-CTCTTTTCCTTTGTCCTCAAAA
1 TTTTCCTTTTTTCCTTTGTCCTCAAAA
81600 AGTGGGACAC
Statistics
Matches: 189, Mismatches: 22, Indels: 44
0.74 0.09 0.17
Matches are distributed among these distances:
35 10 0.05
36 18 0.10
38 3 0.02
39 6 0.03
40 17 0.09
41 25 0.13
42 44 0.23
43 27 0.14
44 9 0.05
45 24 0.13
46 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.41
Consensus pattern (42 bp):
TTTTCCTTTTTTCCTTTGTCCTCAAAAGCAGGACACATTTCA
Found at i:81550 original size:41 final size:40
Alignment explanation
Indices: 81499--81597 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 40
81489 ACGTACTCTT
* * *
81499 TTTTCACTTTGTCCTCAAGAAGCAGGACAC-TTTCCTTTTC
1 TTTTC-CTTTGTCCTCAAGAAGCAAGACACATTTCATTCTC
* * *
81539 TTTCTTTCTTTGTCCTCAAGGAGCAAGACCCATTTCATTCTC
1 -TT-TTCCTTTGTCCTCAAGAAGCAAGACACATTTCATTCTC
81581 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
81598 AAAGTGGGAC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
40 14 0.29
41 25 0.51
42 10 0.20
ACGTcount: A:0.18, C:0.28, G:0.11, T:0.42
Consensus pattern (40 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACACATTTCATTCTC
Found at i:84093 original size:79 final size:79
Alignment explanation
Indices: 83958--84289 Score: 395
Period size: 79 Copynumber: 4.2 Consensus size: 79
83948 TCTATAATCG
* * * *
83958 GGGATACTCCAACTCCGATTTTATTTTCAAAACATTAATTTTTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
84023 CCGTTATTTCATCA
66 CCGTTATTTCATCA
* * ** *
84037 GGGATACTCCAACCCCAACTTTA-TTTCTAAAATATTGATTTCTT-ATAATCGAGGATACTCCAA
1 GGGATACTCCAACCCCAATTTTATTTTC-AAAACATCAATTT-TTCACAATCGAGGATACTCCAA
*
84100 CCCCATTATTTTCA-CA
64 CCCCGTTA-TTTCATCA
* * * * * * * *
84116 GGGATACTCCAATCCCGATTTTATTTTCAAAACATCGATTTTCCACCATCGGGGATACTCTAACA
1 GGGATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
*
84181 CCGTTATTTC-TAA
66 CCGTTATTTCATCA
*
84194 GGGGATACTCCAACCCCAGTTTTA-TTTCTAAAACATCAATTTTTCACAATCGAGGATACTCCAA
1 -GGGATACTCCAACCCCAATTTTATTTTC-AAAACATCAATTTTTCACAATCGAGGATACTCCAA
*
84258 CCCCGTTATTTCATCG
64 CCCCGTTATTTCATCA
84274 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
84290 GTTATTTCTG
Statistics
Matches: 212, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
78 14 0.07
79 186 0.88
80 12 0.06
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
CCGTTATTTCATCA
Found at i:84167 original size:158 final size:157
Alignment explanation
Indices: 83958--84288 Score: 461
Period size: 158 Copynumber: 2.1 Consensus size: 157
83948 TCTATAATCG
* * *
83958 GGGATACTCCAACTCCGATTTTATTTTCAAAACATTAATTTTTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAAC-CCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACA
* * ** *
84023 CCGTTATTTCATCA-GGGATACTCCAACCCCAACTTTATTTCTAAAATATTGATTTCTT-ATAAT
65 CCGTTATTTC-TAAGGGGATACTCCAACCCCAACTTTATTTCTAAAACATCAATTT-TTCACAAT
84086 CGAGGATACTCCAACCCCATTATTTTCA-CA
128 CGAGGATACTCCAACCCCATTA-TTTCATCA
* * *
84116 GGGATACTCCAATCCCGATTTTATTTTCAAAACATCGATTTTCCACCATCGGGGATACTCTAACA
1 GGGATACTCCAA-CCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACA
**
84181 CCGTTATTTCTAAGGGGATACTCCAACCCCAGTTTTATTTCTAAAACATCAATTTTTCACAATCG
65 CCGTTATTTCTAAGGGGATACTCCAACCCCAACTTTATTTCTAAAACATCAATTTTTCACAATCG
* *
84246 AGGATACTCCAACCCCGTTATTTCATCG
130 AGGATACTCCAACCCCATTATTTCATCA
84274 GGGATACTCCAACCC
1 GGGATACTCCAACCC
84289 CGTTATTTCT
Statistics
Matches: 154, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
157 12 0.08
158 141 0.92
159 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (157 bp):
GGGATACTCCAACCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACAC
CGTTATTTCTAAGGGGATACTCCAACCCCAACTTTATTTCTAAAACATCAATTTTTCACAATCGA
GGATACTCCAACCCCATTATTTCATCA
Found at i:84277 original size:107 final size:108
Alignment explanation
Indices: 84162--84392 Score: 324
Period size: 107 Copynumber: 2.2 Consensus size: 108
84152 GATTTTCCAC
* *
84162 CATCGGGGATACTCTAACACCGTTATTTCTAAGGGGATACTCCAACCCC-AGTTTTATTTCTAAA
1 CATCGGGGATACTCCAACACCGTTATTTCTAAGGGGATACTCCAACCCCGA-CTTTATTTCTAAA
* *
84226 ACATCAATTTTTCACAATCGAGGATACTCCAACCCCGTTA-TTT
65 ACATCAATTTCTCACAATCGAGGATACTCCAACCCCATTATTTT
* * *
84269 CATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATGCTCCAACCCCGACTTTATTTCTAAAA
1 CATCGGGGATACTCCAACACCGTTATTTCTAAGGGGATACTCCAACCCCGACTTTATTTCTAAAA
* ** * *
84334 TATTGATTTCTCATAATCGGGGATACTCCAACCCCATTATTTT
66 CATCAATTTCTCACAATCGAGGATACTCCAACCCCATTATTTT
84377 CA-CGGGGATACTCCAA
1 CATCGGGGATACTCCAA
84393 TCTTGATTTT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
107 104 0.95
108 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (108 bp):
CATCGGGGATACTCCAACACCGTTATTTCTAAGGGGATACTCCAACCCCGACTTTATTTCTAAAA
CATCAATTTCTCACAATCGAGGATACTCCAACCCCATTATTTT
Found at i:84278 original size:28 final size:28
Alignment explanation
Indices: 84242--84318 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
84232 ATTTTTCACA
*
84242 ATCGAGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
84270 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
* *
84298 -TGAGGGGATGCTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
84319 ACTTTATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 1 0.02
28 44 0.98
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:84353 original size:79 final size:78
Alignment explanation
Indices: 84270--84529 Score: 310
Period size: 79 Copynumber: 3.3 Consensus size: 78
84260 CCGTTATTTC
* * * *
84270 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATGCTCCAACCCCGACTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCTAAGGGGATACTCCAACCCCGATTTTATTTCTAAAAC
**
84335 ATTGATTTCTCATA
66 ACCGATTT-TCATA
* * * **
84349 ATCGGGGATACTCCAACCCCATTATTT-TCACGGGGATACTCCAATCTTGATTTTATTT-TCAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCT-AAGGGGATACTCCAACCCCGATTTTATTTCT-AAA
84412 ACACCGATTTTCTATA
64 ACACCGATTTTC-ATA
* * * *
84428 ATCGGGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCAATTTTTATTTCTAGAA
1 ATCGGGGATACTCCAACCCCGTTATTTCTAAGGGGATACTCCAACCCCGA-TTTTATTTCTAAAA
84493 CACCGATTTTCCATA
65 CACCGATTTT-CATA
84508 ATCGGGGATACTCC-ACCCCGTT
1 ATCGGGGATACTCCAACCCCGTT
84530 GTTATCTCCA
Statistics
Matches: 153, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
78 4 0.03
79 109 0.71
80 38 0.25
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTCTAAGGGGATACTCCAACCCCGATTTTATTTCTAAAAC
ACCGATTTTCATA
Found at i:84355 original size:186 final size:187
Alignment explanation
Indices: 84084--84476 Score: 444
Period size: 186 Copynumber: 2.1 Consensus size: 187
84074 ATTTCTTATA
* * *
84084 ATCGAGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAATCCCGATTTTATTTTCAAAAC
1 ATCGGGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAACCCCGACTTTATTTTCAAAAC
* * *
84149 ATCGATTTTCCACCATCGGGGATACTCTAACACCGTTA-TTTCTAAGGGGATACTCCAACCCCAG
66 ATCGATTTTCCACAATCGGGGATACTCCAACACCATTATTTTC-AAGGGGATACTCCAA-CCCAG
*
84213 -TTTTA-TTTCTAAAACATCAATTTT-TCACAATCGAGGATACTCCAACCCCGTTATTT-C
129 ATTTTATTTTC-AAAACACCAATTTTCT-ACAATCGAGGATACTCCAACCCCGTTATTTCC
* * * *
84270 ATCGGGGATACTCCAACCCCGTTATTTCTGA-GGGGATGCTCCAACCCCGACTTTA-TTTCTAAA
1 ATCGGGGATACTCCAACCCCATTATTT-TCACAGGGATACTCCAACCCCGACTTTATTTTC-AAA
* * * * * * **
84333 ATATTGA-TTTCTCATAATCGGGGATACTCCAACCCCATTATTTTCACGGGGATACTCCAATCTT
64 ACATCGATTTTC-CACAATCGGGGATACTCCAACACCATTATTTTCAAGGGGATACTCCAACCCA
* * * *
84397 GATTTTATTTTCAAAACACCGATTTTCTATAATCGGGGATACTCCAACCCTGTTATTTCC
128 GATTTTATTTTCAAAACACCAATTTTCTACAATCGAGGATACTCCAACCCCGTTATTTCC
*
84457 A-AGGGGATACTCCAACCCCA
1 ATCGGGGATACTCCAACCCCA
84477 ATTTTTATTT
Statistics
Matches: 174, Mismatches: 25, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
185 10 0.06
186 151 0.87
187 13 0.07
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (187 bp):
ATCGGGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAACCCCGACTTTATTTTCAAAAC
ATCGATTTTCCACAATCGGGGATACTCCAACACCATTATTTTCAAGGGGATACTCCAACCCAGAT
TTTATTTTCAAAACACCAATTTTCTACAATCGAGGATACTCCAACCCCGTTATTTCC
Found at i:84528 original size:265 final size:265
Alignment explanation
Indices: 84005--84529 Score: 813
Period size: 265 Copynumber: 2.0 Consensus size: 265
83995 ATTTTTCACA
84005 ATCGGGGATACTCCAACCCCGTTATTTCATCAGGGATACTCCAACCCCAACTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCATCAGGGATACTCCAACCCCAACTTTATTTCTAAAAT
*
84070 ATTGATTTCTTATAATCGAGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAATCCCGAT
66 ATTGATTTCTCATAATCGAGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAATCCCGAT
* * * *
84135 TTTATTTTCAAAACATCGATTTTCCACCATCGGGGATACTCTAACACCGTTATTTCTAAGGGGAT
131 TTTATTTTCAAAACACCGATTTTCCACAATCGGGGATACTCCAACACCGTTATTTCCAAGGGGAT
* *
84200 ACTCCAACCCCAGTTTTATTTCTAAAACATCAATTTTTCACAATCGAGGATACTCCAACCCCGTT
196 ACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCCGTT
84265 ATTTC
261 ATTTC
* * *
84270 ATCGGGGATACTCCAACCCCGTTATTTC-TGAGGGGATGCTCCAACCCCGACTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCATCA-GGGATACTCCAACCCCAACTTTATTTCTAAAA
* * **
84334 TATTGATTTCTCATAATCGGGGATACTCCAACCCCATTATTTTCACGGGGATACTCCAATCTTGA
65 TATTGATTTCTCATAATCGAGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAATCCCGA
* *
84399 TTTTATTTTCAAAACACCGATTTTCTATAATCGGGGATACTCCAAC-CCTGTTATTTCCAAGGGG
130 TTTTATTTTCAAAACACCGATTTTCCACAATCGGGGATACTCCAACACC-GTTATTTCCAAGGGG
* * * * *
84463 ATACTCCAACCCCAATTTTTATTTCTAGAACACCGATTTTCCATAATCGGGGATACTCC-ACCCC
194 ATACTCCAACCCC-AGTTTTATTTCTAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCC
84527 GTT
258 GTT
84530 GTTATCTCCA
Statistics
Matches: 236, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
264 4 0.02
265 194 0.82
266 38 0.16
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (265 bp):
ATCGGGGATACTCCAACCCCGTTATTTCATCAGGGATACTCCAACCCCAACTTTATTTCTAAAAT
ATTGATTTCTCATAATCGAGGATACTCCAACCCCATTATTTTCACAGGGATACTCCAATCCCGAT
TTTATTTTCAAAACACCGATTTTCCACAATCGGGGATACTCCAACACCGTTATTTCCAAGGGGAT
ACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCCGTT
ATTTC
Found at i:87056 original size:68 final size:68
Alignment explanation
Indices: 86967--87117 Score: 284
Period size: 68 Copynumber: 2.2 Consensus size: 68
86957 ATGCCTCCGA
* *
86967 GGGGATACTCCAACCCTGTTTTTAAACTTGCCAAGATCATTCTTATTTTTACCTAAATTATCATT
1 GGGGACACTCCAACCCCGTTTTTAAACTTGCCAAGATCATTCTTATTTTTACCTAAATTATCATT
87032 GTC
66 GTC
87035 GGGGACACTCCAACCCCGTTTTTAAACTTGCCAAGATCATTCTTATTTTTACCTAAATTATCATT
1 GGGGACACTCCAACCCCGTTTTTAAACTTGCCAAGATCATTCTTATTTTTACCTAAATTATCATT
87100 GTC
66 GTC
87103 GGGGACACTCCAACC
1 GGGGACACTCCAACC
87118 TCATTCCTTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 81 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (68 bp):
GGGGACACTCCAACCCCGTTTTTAAACTTGCCAAGATCATTCTTATTTTTACCTAAATTATCATT
GTC
Found at i:88617 original size:21 final size:21
Alignment explanation
Indices: 88571--88646 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
88561 AATATATCCA
88571 AATGTATCGATACA-TTGTAG
1 AATGTATCGATACATTTGTAG
*
88591 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
* * *
88612 AGTGTATCGATACA-TTATACA
1 AATGTATCGATACATTTGTA-G
88633 AATGTATCGATACA
1 AATGTATCGATACA
88647 AGGTCCCAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:88765 original size:13 final size:13
Alignment explanation
Indices: 88747--88772 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
88737 CATTTTTCTG
88747 TGTATCGATACAT
1 TGTATCGATACAT
88760 TGTATCGATACAT
1 TGTATCGATACAT
88773 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88769 original size:33 final size:33
Alignment explanation
Indices: 88727--88793 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
88717 GCGAAGGAAA
***
88727 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
88760 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
88793 T
1 T
88794 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:91245 original size:52 final size:50
Alignment explanation
Indices: 91159--91519 Score: 204
Period size: 51 Copynumber: 6.9 Consensus size: 50
91149 TTCTCACTCT
*
91159 GATTTTATTTTCAAAACACTAA-TTTTCTATAATCGGGGATACTCCAACTCC
1 GATTTTATTTCCAAAACACTAATTTTTC-ATAATCGGGGATACTCCAAC-CC
* *
91210 GATTTTATTTCCAAAAACATTAATTTTTCATAATCGAGGATACTCCAACCTC
1 GATTTTATTTCC-AAAACACTAATTTTTCATAATCGGGGATACTCCAACC-C
***** * * * ** * * **** **
91262 G-TTGTCTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTTAAACCCC
1 GATT-T-T-ATTTCCAAAACACTAA---TTTTTCATAATCGGGGATACTCCAA-CCC
** * * * * *
91318 GGCTTTATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCTC
1 GATTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAACC-C
* * *
91369 GGTTTTATTTCTAAAACACTAATTTTTCACAATCGGGGATACTCCAACCTC
1 GATTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAACC-C
* * * * *
91420 GGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTCC
1 GATTTTATTTCCAAAACACTAATTTTTC-ATAATCGGGGATACTCCAAC-CC
* * **
91472 GATTTTATTTCCAAAAACACCAATTTTTCACAATCGACGATACTCCAA
1 GATTTTATTTCC-AAAACACTAATTTTTCATAATCGGGGATACTCCAA
91520 TCCTTGTTAT
Statistics
Matches: 228, Mismatches: 67, Indels: 29
0.70 0.21 0.09
Matches are distributed among these distances:
50 2 0.01
51 96 0.42
52 75 0.33
53 27 0.12
54 7 0.03
55 1 0.00
56 17 0.07
57 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (50 bp):
GATTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAACCC
Found at i:91685 original size:79 final size:78
Alignment explanation
Indices: 91533--91717 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 78
91523 TTGTTATTTC
** *
91533 ATCGGGGATACTCCAACCCCGTTACCTCTGAGGGGATACTCCAACCACGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCAAACCACGGCTTTATTTCT-AAAT
** *
91598 ATTGATTTCTCATA
65 ATCAATTTCTCAAA
* ** *
91612 ATTGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCAAATCC-CGATTTTTTTTTCT-AA
1 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCAAA-CCACG-GCTTTATTTCTAAA
91675 TCATCAATTTCTCAAA
64 T-ATCAATTTCTCAAA
*
91691 ATCGGGGATACTCCAGCCCCGTTATTT
1 ATCGGGGATACTCCAACCCCGTTATTT
91718 TCAAGGGGAC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 78 0.86
80 10 0.11
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCAAACCACGGCTTTATTTCTAAATA
TCAATTTCTCAAA
Found at i:95157 original size:32 final size:33
Alignment explanation
Indices: 95095--95158 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
95085 TACAAGCCAA
** *
95095 TGTATCGATACAATTTTTTGTGTATTGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
95128 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
95159 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:98833 original size:60 final size:60
Alignment explanation
Indices: 98721--100803 Score: 1863
Period size: 55 Copynumber: 36.3 Consensus size: 60
98711 TAGCCCTTCC
* **
98721 AGTCCTCAAAGAGCAGGACACCTTTTTTATTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
98783 AGTCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
**
98843 AGTCCTCAAAGAGCAGGACGCCTTTTTTATTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
98905 AGTCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
98965 AGTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
*
99020 AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
* * *
99081 AATCCTCAAAGAGCAGGA------TGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
* *
99136 AGTACTCAAAGAGCAGGACGCCTTCT-CTTTCTAAAGCCCACACAAGTTGGTGGCA-CTTCCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTT-TAAAGCCCACACAAGTTGGTGGCACCTT--T
* *
99197 AGTCCTCAAGGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
* * *
99252 AGTCCTCGAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCATACAAGTTGGTGGCA-CTTCCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
* * *
99313 AGTCCTCAAAGAGCAGGA------TGCCTTTTAAAGCCCACATAAGTTGGTGGCA-CTTCCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
* * *
99368 AGTCCTCAAAGAGCAGGATG-CTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
99426 CCAGTCCTCAAAGAGCAGGATGCCTTTT-CTTTTAAAGCCCACAAAAGTTGGTGGCACCTTC
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * **
99487 AGTCCTCAAAGAGTAGGA---C---ACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-T
* *
99542 AGTCCTTAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCA-TTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
99600 CCAGTCCTCAAAGAGCGGGACGCCTTTT-CTTTTAAAGCCCACACAAATTGGTGGCACCTTC
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
99661 AGTCCTCAAAGAGCGGGATGCCTTTT--TTTTAAAGCCCACCCAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTT
* * * *
99720 AGTCCCCAAAGAGCAGGA--CC----CCTTTCAAAGCCCACATAAGTTGGTGGCA-TTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
99773 CCAGTCCTCAAAGAGCAGGACACC-TTT-C----AAAGCCCACATAAGTTGGTGG---C---
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * * ** *
99823 A-TCCTCAAAGAGCAAGACACC----AC-TTAAAGCCCACACA-A-GTTGGTGGCAGCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCC-CACACAAGTTGGTGGCACCTTT
* *
99876 CAGTCCTCAAAGAGCAGGA---C---ACCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTT
1 -AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
99930 CCAGTCCTCAAAAAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCA-TTTT
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
99990 CCAGTTCTCAAAGAGCGGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
** * * *
100051 AGTCCTCAAAGAGTGGGACGCCTTTT-CTTTTAAAGCCCACCCAAGTTGGTGGTACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
100110 AGTCCTCAAAGAGCAGGATG-CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
100170 CAGTCCCCAAAGAGTAGGA--CC----CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTT
1 -AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
100224 CCAGTCCTCAAAGAGCAGGAC-ACTTTT-C----AAAGCCCACACAAGTTGGTGG---C---
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
100274 A-TCCTCAAAGAGCAGGA---C--AT-CTCTTAAAGCCCATACAAATTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
100327 CAGTCCTCAAAGAGCAGGA---C---ACCTTTTAAAGCCCACATAAGTTGGTGGCA-TTTT
1 -AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
**
100381 CCAGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTCC
1 --AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
** *
100442 AGTCCTCAAAGAGTGGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
100501 AATCCTCAAAGAGTAGGACGCCTTTT-CTTTTAAAGCCCACCCAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
100560 AGTCCTCAAAAAGCAGGATG-CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT
* * *
100620 CAGTCCCCAAAGAGCAAGA--CC----CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 -AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
100675 CAGTCCTCAAAGAGTAGGACACC---T-C--TTAAAGCCCACACAAGTTGGTGGCACCCTTC
1 -AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * *
100731 AGTCCTCAAAAAGCAGGACGCC-TTT-C----AAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTT
100786 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
100804 TACACTTTAT
Statistics
Matches: 1749, Mismatches: 151, Indels: 249
0.81 0.07 0.12
Matches are distributed among these distances:
43 2 0.00
45 2 0.00
47 62 0.04
48 7 0.00
49 4 0.00
50 2 0.00
52 1 0.00
53 11 0.01
54 77 0.04
55 537 0.31
56 18 0.01
57 9 0.01
58 41 0.02
59 275 0.16
60 435 0.25
61 191 0.11
62 75 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:100027 original size:450 final size:451
Alignment explanation
Indices: 98715--100803 Score: 2457
Period size: 450 Copynumber: 4.5 Consensus size: 451
98705 CTCTTTTAGC
** * *
98715 CCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTTATTTTTAAAGCCCACACAAGTTGGTGGCACC
1 CCTT-CAGTCCTCAAAGAGCAGGATGCC--TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
98780 TTT-AGTCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-
63 TTTCAGTCCCCAAAGAGCAGGA--CC----CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* *
98843 -AGTCCTCAAAGAGCAGGACGCCTTTTTTATTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAG
121 CAGTCCTCAAAGAGCAGGACACC--------TTTCAAAGCCCACACAAGTTGGTGG--CC---AG
* * *
98907 TCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCT
173 TCCTCAAAGAGCAGGA---C---ACCTCTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCT
* *
98971 CAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
231 CAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
* * *
99036 GACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAATCCTCAAAGAGCAGGATG
296 GACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACG
*
99101 -C----CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTACTCAAAGAGCAGGACGCCTT
359 CCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGACGCCTT
*
99160 CTCTTTCTAAAGCCCACACAAGTTGGTGGCA
422 TTCTTT-TAAAGCCCACACAAGTTGGTGGCA
* *
99191 -CTTCCTAGTCCTCAAGGAGCAGGACG-C----CTTTT-AAAGCCCACACAAGTTGGTGGCA-CT
1 CCTT-C-AGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCT
* * * * * *
99248 TCCCAGTCCTCGAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCATACAAGTTGGTGGCA-CTTCC
64 T-TCAGTCCCCAAAGAGCAGGA---C--C-CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
** * *
99312 TAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCCAGTCCTCAA
122 -AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGG------CCAGTCCTCAA
** * *
99377 AGAGCAGGATGCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGC
180 AGAGCAGGA--C---ACCTCTTAAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGC
* * *
99442 AGGATGC-CTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGTAGGA
239 AGGA--CAC----CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA
* * * *
99505 C-AC----CTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTTAAAGAGCAGGACGCCT
298 CGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCCT
** *
99565 TTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCCTTTTCT
362 TTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTTTCT
*
99630 TTTAAAGCCCACACAAATTGGTGGCA
426 TTTAAAGCCCACACAAGTTGGTGGCA
* *
99656 CCTTCAGTCCTCAAAGAGCGGGATGCCTTTT-TTTT-AAAGCCCACCCAAGTTGGTGGCACCTTT
1 CCTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
* *
99719 TAGTCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAA
66 CAGTCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
* * *
99784 AGAGCAGGACACCTTTCAAAGCCCACATAAGTTGGTGG-CA-TCCTCAAAGAGCAAGACACCACT
131 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCCAGTCCTCAAAGAGCAGGACACCTCT
99847 TAAAGCCCACACAAGTTGGTGGCAGCTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCAC
196 TAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCAC
* *
99912 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAAAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAG
260 ACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAG
* * *
99977 TTGGTGGCATTTTCCAGTTCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGT
325 TTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGT
** * *
100042 GGCACCTTCAGTCCTCAAAGAGTGGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGTA
389 GGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
*
100105 CCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 CCTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
*
100170 CAGTCCCCAAAGAGTAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
66 CAGTCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
* *
100235 AGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGG-CA-TCCTCAAAGAGCAGGACATCTCT
131 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCCAGTCCTCAAAGAGCAGGACACCTCT
* *
100298 TAAAGCCCATACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCAC
196 TAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCAC
* *
100363 ATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAG
260 ACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAG
* **
100428 TTGGTGGCACCTCCAGTCCTCAAAGAGTGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTG
325 TTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTG
* * *
100493 GCACCTTCAATCCTCAAAGAGTAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCA
390 GCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
100555 CCTTCAGTCCTCAAAAAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 CCTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
* *
100620 CAGTCCCCAAAGAGCAAGACCCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCA
66 CAGTCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCA
* *
100684 AAGAGTAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGG
130 AAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGG----C--CAGTCCTCAAAGAGCAGG
* * *
100748 ACGCCT-TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
188 ACACCTCTT-AAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGGA
100804 TACACTTTAT
Statistics
Matches: 1448, Mismatches: 107, Indels: 134
0.86 0.06 0.08
Matches are distributed among these distances:
444 29 0.02
445 18 0.01
446 1 0.00
447 1 0.00
448 1 0.00
449 125 0.09
450 359 0.25
451 286 0.20
452 1 0.00
454 15 0.01
455 2 0.00
457 5 0.00
458 59 0.04
461 48 0.03
462 131 0.09
463 40 0.03
464 18 0.01
465 27 0.02
466 63 0.04
467 26 0.02
468 94 0.06
469 52 0.04
470 22 0.02
472 1 0.00
475 6 0.00
476 18 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (451 bp):
CCTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
CAGTCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCCAGTCCTCAAAGAGCAGGACACCTCT
TAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACA
CAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGT
TGGTGGCACTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGG
CACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:100674 original size:29 final size:29
Alignment explanation
Indices: 100588--100731 Score: 85
Period size: 29 Copynumber: 5.2 Consensus size: 29
100578 TGCTTTTTCT
100588 TTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTCAAAGCCCACACAAGTTGGTGGCACC
* ** * *
100617 TTTC--AGTCCC-CA-AAG-AGCAAGACCCC
1 TTTCAAAG-CCCACACAAGTTG-GTGGCACC
100643 TTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
100672 TTTC--AGTCCTCA-AAG--AGTAGGACACC
1 TTTCAAAGCCCACACAAGTTGGT-GG-CACC
100698 TCTT-AAAGCCCACACAAGTTGGTGGCACC
1 T-TTCAAAGCCCACACAAGTTGGTGGCACC
*
100727 CTTCA
1 TTTCA
100732 GTCCTCAAAA
Statistics
Matches: 82, Mismatches: 17, Indels: 32
0.63 0.13 0.24
Matches are distributed among these distances:
24 2 0.02
25 3 0.04
26 19 0.23
27 15 0.18
28 15 0.18
29 23 0.28
30 3 0.04
31 2 0.02
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (29 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACC
Found at i:100835 original size:42 final size:42
Alignment explanation
Indices: 100782--100875 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
100772 TGGTGGCACT
*
100782 TTTTAGTCCTCAAAGAGCAGGATACACTTT-ATTTTCCTTTTTC
1 TTTT-GTCCTCAAAGAGCAGGACACA-TTTCATTTTCCTTTTTC
* **
100825 TTTTGTCCTCAGAGAGCAGGACGTATTTCATTTTCCTTTTTC
1 TTTTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTC
*
100867 CTTTGTCCT
1 TTTTGTCCT
100876 TGGAAAATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 3 0.07
42 38 0.84
43 4 0.09
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (42 bp):
TTTTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTC
Found at i:100888 original size:42 final size:42
Alignment explanation
Indices: 100812--100891 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
100802 GATACACTTT
* * *
100812 ATTTTCCTTTTTCTTTTGTCCTCAGAGAGCAGGACGTATTTC
1 ATTTTCCTTTTTCCTTTGTCCTCAGAAAACAGGACGTATTTC
** *
100854 ATTTTCCTTTTTCCTTTGTCCTTGGAAAATAGGACGTA
1 ATTTTCCTTTTTCCTTTGTCCTCAGAAAACAGGACGTA
100892 CTCTTTTTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (42 bp):
ATTTTCCTTTTTCCTTTGTCCTCAGAAAACAGGACGTATTTC
Found at i:101596 original size:21 final size:21
Alignment explanation
Indices: 101553--101628 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
101543 AATTTATCCA
101553 AATGTATCGATACA-TTGTAG
1 AATGTATCGATACATTTGTAG
* *
101573 AATGTATTGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
* *
101594 AATGTATCGATACA-TTATACA
1 AATGTATCGATACATTTGTA-G
101615 AATGTATCGATACA
1 AATGTATCGATACA
101629 AGGTCCCAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
20 16 0.33
21 32 0.67
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:101770 original size:33 final size:33
Alignment explanation
Indices: 101709--101775 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
101699 GCCAAGGAAA
*** *
101709 TGTATCGATACATTTTTCTGTGTCTCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
101742 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
101775 T
1 T
101776 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:104236 original size:52 final size:51
Alignment explanation
Indices: 104139--104505 Score: 224
Period size: 51 Copynumber: 7.0 Consensus size: 51
104129 GGATATTCTC
* * * *
104139 ACTCGGATTTTATTTTCAAAACACTAA-TTTTCTATAATCGGGGATACTCCA
1 ACTCCGATTTTATTTCCAAAACACCAATTTTTC-ATAATCGAGGATACTCCA
104190 ACTCCGATTTTATTTCCAAAAACACCAATTTTTCATAATCGAGGATACTCCA
1 ACTCCGATTTTATTTCC-AAAACACCAATTTTTCATAATCGAGGATACTCCA
***** * * ** * *
104242 AC-CTCG-TTGTCTCATCGGGGATACTCCAACCCCGTTACCT--TCGAGGGGATACTCCA
1 ACTC-CGATT-T-T-ATTTCCAAAACACCAA---TTTTTCATAATCGA--GGATACTCCA
* ** * * *** * *
104298 ACCCCGGCTTTATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCA
1 ACTCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGAGGATACTCCA
* * * *
104349 AC-CTCGGTTTTATTTCTAAAACACTAATTTTTCACAATCGAGGATACTCCA
1 ACTC-CGATTTTATTTCCAAAACACCAATTTTTCATAATCGAGGATACTCCA
* * * * * * *
104400 ACCCCGGTTTTATTTTCAAAATACCAATTTTCCTTTAATCGGGGATACTCCA
1 ACTCCGATTTTATTTCCAAAACACCAATTTTTC-ATAATCGAGGATACTCCA
* *
104452 ACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCA
1 ACTCCGATTTTATTTCC-AAAACACCAATTTTTCATAATCGAGGATACTCCA
104504 AC
1 AC
104506 CTTGTTATTT
Statistics
Matches: 238, Mismatches: 59, Indels: 37
0.71 0.18 0.11
Matches are distributed among these distances:
50 1 0.00
51 97 0.41
52 77 0.32
53 30 0.13
54 11 0.05
55 1 0.00
56 19 0.08
57 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
ACTCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGAGGATACTCCA
Found at i:104494 original size:104 final size:102
Alignment explanation
Indices: 104288--104506 Score: 298
Period size: 102 Copynumber: 2.1 Consensus size: 102
104278 ACCTTCGAGG
***
104288 GGATACTCCAACCCCGGCTTTATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCT
1 GGATACTCCAACCCCGGCTTTATTCCCAAAATACCAATTTCTCATAATCGGGGATACTCCAACCT
* * *
104353 CGGTTTTATTTCTAAAACACTAATTTTTCACAATCGA
66 CGATTTTATTTCAAAAACACCAATTTTTCACAATCGA
* ** *
104390 GGATACTCCAACCCCGGTTTTATTTTCAAAATACCAATTT-TCCTTTAATCGGGGATACTCCAA-
1 GGATACTCCAACCCCGGCTTTATTCCCAAAATACCAATTTCT-C-ATAATCGGGGATACTCCAAC
104453 CTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATCGA
64 CTC-GATTTTATTT-CAAAAACACCAATTTTTCACAATCGA
104494 GGATACTCCAACC
1 GGATACTCCAACC
104507 TTGTTATTTC
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
101 1 0.01
102 38 0.37
103 27 0.26
104 37 0.36
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (102 bp):
GGATACTCCAACCCCGGCTTTATTCCCAAAATACCAATTTCTCATAATCGGGGATACTCCAACCT
CGATTTTATTTCAAAAACACCAATTTTTCACAATCGA
Found at i:104626 original size:79 final size:79
Alignment explanation
Indices: 104517--104754 Score: 221
Period size: 80 Copynumber: 3.0 Consensus size: 79
104507 TTGTTATTTC
* * ** *
104517 ATCGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAAT
104582 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * * * *
104596 ATTGGAGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAATCCTGATTTTTTTTTTCC--A
1 ATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG--GTTTTATTTCCAAA
* *
104659 ATCATCGATTTCTCACA
64 AT-ATTGATTTCTCATA
* * * * * * *
104676 ATCGGGGATATTCCAGCCCCGTTATTTTCAAGGGGACACTCCAACCCC-GTTATTATGTCCAAAA
1 ATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT-TTATTTCCAAAA
*
104740 TATTAAATTTCTCAT
65 TATT-GATTTCTCAT
104755 CGGGAAATAT
Statistics
Matches: 123, Mismatches: 29, Indels: 13
0.75 0.18 0.08
Matches are distributed among these distances:
77 2 0.02
78 6 0.05
79 46 0.37
80 61 0.50
81 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAAT
ATTGATTTCTCATA
Found at i:107798 original size:13 final size:13
Alignment explanation
Indices: 107780--107804 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107770 CATAAAGTGT
107780 TGTATCGATACAA
1 TGTATCGATACAA
107793 TGTATCGATACA
1 TGTATCGATACA
107805 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:107820 original size:32 final size:33
Alignment explanation
Indices: 107760--107828 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
107750 TTCAATGATT
107760 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
107793 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
107825 TGTA
1 TGTA
107829 AGCTACTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 22 0.63
33 13 0.37
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:107884 original size:13 final size:13
Alignment explanation
Indices: 107866--107890 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107856 ATTACTCAAA
107866 TGTATCGATACAT
1 TGTATCGATACAT
107879 TGTATCGATACA
1 TGTATCGATACA
107891 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.