Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1822
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1013428
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
File 5 of 7
Found at i:632373 original size:42 final size:42
Alignment explanation
Indices: 632308--632389 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
632298 TTTTCTCTCG
* * * *
632308 CTCTTCTATCTTCTTCTCTTCTCCTCTTGTTATCCCTCCTTT
1 CTCTTCTATCTTCTTCTATTCTCCTCCTATCATCCCTCCTTT
*
632350 CTCTTTTATC-TCTTCTATCTCTCCTCCTATCATCCCTCCT
1 CTCTTCTATCTTCTTCTAT-TCTCCTCCTATCATCCCTCCT
632390 GATGACAACC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 7 0.21
42 27 0.79
ACGTcount: A:0.07, C:0.40, G:0.01, T:0.51
Consensus pattern (42 bp):
CTCTTCTATCTTCTTCTATTCTCCTCCTATCATCCCTCCTTT
Found at i:640305 original size:42 final size:42
Alignment explanation
Indices: 640250--640359 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
640240 TTCTTCTCTC
* *
640250 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCCCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
* *
640292 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
640334 CTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
640360 TCTTTCTCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
Found at i:643242 original size:42 final size:42
Alignment explanation
Indices: 643187--643305 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
643177 TTCTTCTCTC
* *
643187 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
643229 CTCCTCCTATCATCCCTCCTATCTCTACTATCTTTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
643271 CTCCTCCTATCATCCCTCGTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
643306 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:643247 original size:24 final size:23
Alignment explanation
Indices: 643187--643295 Score: 76
Period size: 21 Copynumber: 5.1 Consensus size: 23
643177 TTCTTCTCTC
*
643187 CTCCTCCTGTCATCCCT-C--CT
1 CTCCTCCTATCATCCCTCCGTCT
* *
643207 CT-CT-CTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCC-GTCT
*
643229 CTCCTCCTATCATCCCTCC-TAT
1 CTCCTCCTATCATCCCTCCGTCT
* * *
643251 CT-CTACTATCTTTCCT--GTCT
1 CTCCTCCTATCATCCCTCCGTCT
643271 CTCCTCCTATCATCCCT-CGTCT
1 CTCCTCCTATCATCCCTCCGTCT
643293 CTC
1 CTC
643296 TTCTTTCTCT
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
18 8 0.12
19 3 0.04
20 6 0.09
21 22 0.33
22 15 0.22
23 2 0.03
24 11 0.16
ACGTcount: A:0.09, C:0.46, G:0.04, T:0.41
Consensus pattern (23 bp):
CTCCTCCTATCATCCCTCCGTCT
Found at i:650748 original size:28 final size:28
Alignment explanation
Indices: 650704--650836 Score: 99
Period size: 29 Copynumber: 4.6 Consensus size: 28
650694 TTTGAAGTAC
* *
650704 GTGCCACGAA-TTCGTGGGTCTAAAAAGG
1 GTGCCACTAACTT-GTGGGTCTAGAAAGG
*
650732 GTGCCACTAACTTGTGGG-CTTAGGAGAGG
1 GTGCCACTAACTTGTGGGTC-TA-GAAAGG
* * * *
650761 ATGCCACTAACTTGTGGACTTTTGAAAGG
1 GTGCCACTAACTTGTGG-GTCTAGAAAGG
* * *
650790 GTGCCACTAACTTGTGGACTTTTGAAAGG
1 GTGCCACTAACTTGTGG-GTCTAGAAAGG
* *
650819 GTGCTACTGACTTGTGGG
1 GTGCCACTAACTTGTGGG
650837 CTTAAGATTC
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.01
28 16 0.18
29 70 0.80
30 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (28 bp):
GTGCCACTAACTTGTGGGTCTAGAAAGG
Found at i:650766 original size:29 final size:29
Alignment explanation
Indices: 650727--650840 Score: 147
Period size: 29 Copynumber: 3.9 Consensus size: 29
650717 GTGGGTCTAA
* *
650727 AAAGGGTGCCACTAACTTGTGGGCTTAGG
1 AAAGGGTGCCACTAACTTGTGGACTTATG
* * *
650756 AGAGGATGCCACTAACTTGTGGACTTTTG
1 AAAGGGTGCCACTAACTTGTGGACTTATG
*
650785 AAAGGGTGCCACTAACTTGTGGACTTTTG
1 AAAGGGTGCCACTAACTTGTGGACTTATG
* * *
650814 AAAGGGTGCTACTGACTTGTGGGCTTA
1 AAAGGGTGCCACTAACTTGTGGACTTA
650841 AGATTCAACT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
AAAGGGTGCCACTAACTTGTGGACTTATG
Found at i:651097 original size:65 final size:67
Alignment explanation
Indices: 650978--651365 Score: 221
Period size: 62 Copynumber: 6.1 Consensus size: 67
650968 TGAAAAGGTT
* ** * * *
650978 GCCACCAACTCATTTGAACTTCGAAAAGG-TT-G-T--CACCAACTCGTGTAGACTTTGACTGGG
1 GCCACCAACTCATGTGAACTTTAAAAAGGTTTGGTTGCCACAAACTTGTGTGGACTTTGACTGGG
*
651038 GT
66 GA
* * **
651040 GCCACTAGCTTGTGTG-ACTTTAAAAAGGTTTGGTTG-CA-AAGACTTGTGTGGACTTTGACTGG
1 GCCACCAACTCATGTGAACTTTAAAAAGGTTTGGTTGCCACAA-ACTTGTGTGGACTTTGACTGG
651102 GGA
65 GGA
* * * ***
651105 GCCACCAACTCATGTGAACTTTGAAAAGGTTTGGTTGCCACCAACTTGTGTGAACTTTGAAAAGG
1 GCCACCAACTCATGTGAACTTTAAAAAGGTTTGGTTGCCACAAACTTGTGTGGACTTTGACTGGG
*
651170 GT
66 GA
* * * * * * *
651172 GGCACCAACTCTTGTGGACTTT---AA-CTATGG-TGCCACCAACTTGTGTGGACTTTGACTAGG
1 GCCACCAACTCATGTGAACTTTAAAAAGGTTTGGTTGCCACAAACTTGTGTGGACTTTGACTGGG
*
651232 GT
66 GA
* * * * * * **
651234 GCCACCAACTCGTGTGGACTTTGAATA-G---GG-TGCCACCAACTTGTGTGGACTTTAACTATG
1 GCCACCAACTCATGTGAACTTTAAAAAGGTTTGGTTGCCACAAACTTGTGTGGACTTTGACTGGG
*
651294 GT
66 GA
* * * * *
651296 GCCACCAACTCGTGT-AGAGTTTGAAAA-----GGTTGCCACCAACTTATGTGGACTTTGACTGG
1 GCCACCAACTCATGTGA-ACTTTAAAAAGGTTTGGTTGCCACAAACTTGTGTGGACTTTGACTGG
*
651355 GGT
65 GGA
651358 GCCACCAA
1 GCCACCAA
651366 TGTGTGTGGA
Statistics
Matches: 270, Mismatches: 43, Indels: 26
0.80 0.13 0.08
Matches are distributed among these distances:
61 12 0.04
62 153 0.57
63 5 0.02
64 4 0.01
65 36 0.13
66 19 0.07
67 40 0.15
68 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (67 bp):
GCCACCAACTCATGTGAACTTTAAAAAGGTTTGGTTGCCACAAACTTGTGTGGACTTTGACTGGG
GA
Found at i:651127 original size:31 final size:31
Alignment explanation
Indices: 651085--651411 Score: 305
Period size: 31 Copynumber: 10.4 Consensus size: 31
651075 GCAAAGACTT
* *
651085 GTGTGGACTTTGACTGGGGAGCCACCAACTC
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
* * ** *
651116 ATGTGAACTTTGAAAAGGTTTGGTTGCCACCAACTT
1 GTGTGGACTTTGACTA-G---GG-TGCCACCAACTC
* ** *
651152 GTGTGAACTTTGAAAAGGGTGGCACCAACTC
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
* * * *
651183 TTGTGGACTTTAACTATGGTGCCACCAACTT
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
651214 GTGTGGACTTTGACTAGGGTGCCACCAACTC
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
* *
651245 GTGTGGACTTTGAATAGGGTGCCACCAACTT
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
* *
651276 GTGTGGACTTTAACTATGGTGCCACCAACTC
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
* * ** * *
651307 GTGTAGAGTTTGAAAAGGTTGCCACCAACTT
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
* * *
651338 ATGTGGACTTTGACTGGGGTGCCACCAA-TGT
1 GTGTGGACTTTGACTAGGGTGCCACCAACT-C
* * * *
651369 GTGTGGACTTTGAATAGGGTGGCACCGACTA
1 GTGTGGACTTTGACTAGGGTGCCACCAACTC
651400 GTGTGGACTTTG
1 GTGTGGACTTTG
651412 GAAAAGGTTT
Statistics
Matches: 240, Mismatches: 49, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
30 1 0.00
31 207 0.86
32 4 0.02
35 3 0.01
36 25 0.10
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (31 bp):
GTGTGGACTTTGACTAGGGTGCCACCAACTC
Found at i:651224 original size:62 final size:62
Alignment explanation
Indices: 651081--651411 Score: 353
Period size: 62 Copynumber: 5.3 Consensus size: 62
651071 GGTTGCAAAG
* * * * * *
651081 ACTTGTGTGGACTTTGACTGGGGAGCCACCAACTCATGTGAACTTTGAAAAGGTTTGGTTGCCAC
1 ACTTGTGTGGACTTTGAATAGGGTGCCACCAACTCGTGTGGACTTTGAATA-G---GG-TGCCAC
651146 CA
61 CA
* * * * *
651148 ACTTGTGTGAACTTTGAAAAGGGTGGCACCAACTCTTGTGGACTTT-AACTATGGTGCCACCA
1 ACTTGTGTGGACTTTGAATAGGGTGCCACCAACTCGTGTGGACTTTGAA-TAGGGTGCCACCA
*
651210 ACTTGTGTGGACTTTGACTAGGGTGCCACCAACTCGTGTGGACTTTGAATAGGGTGCCACCA
1 ACTTGTGTGGACTTTGAATAGGGTGCCACCAACTCGTGTGGACTTTGAATAGGGTGCCACCA
* * * * *
651272 ACTTGTGTGGACTTT-AACTATGGTGCCACCAACTCGTGTAGAGTTTGAAAAGGTTGCCACCA
1 ACTTGTGTGGACTTTGAA-TAGGGTGCCACCAACTCGTGTGGACTTTGAATAGGGTGCCACCA
* * * * * *
651334 ACTTATGTGGACTTTGACTGGGGTGCCACCAA-TGTGTGTGGACTTTGAATAGGGTGGCACCG
1 ACTTGTGTGGACTTTGAATAGGGTGCCACCAACT-CGTGTGGACTTTGAATAGGGTGCCACCA
*
651396 ACTAGTGTGGACTTTG
1 ACTTGTGTGGACTTTG
651412 GAAAAGGTTT
Statistics
Matches: 224, Mismatches: 35, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
61 2 0.01
62 176 0.79
63 5 0.02
66 2 0.01
67 39 0.17
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (62 bp):
ACTTGTGTGGACTTTGAATAGGGTGCCACCAACTCGTGTGGACTTTGAATAGGGTGCCACCA
Found at i:651264 original size:93 final size:93
Alignment explanation
Indices: 651081--651418 Score: 360
Period size: 93 Copynumber: 3.6 Consensus size: 93
651071 GGTTGCAAAG
* ** * *
651081 ACTTGTGTGGACTTTGACTGGGGAGCCACCAACTCA-TGTGAACTTTGAAAAGGTTTGGTTGCCA
1 ACTTGTGTGGACTTTAACTATGGTGCCACCAACT-AGTGTGGACTTTGAAAA-G---GG-TGCCA
* * *
651145 CCAACTTGTGTGAACTTTGAAAAGGGTGGCACCA
60 CCAACTTGTGTGGACTTTGAATAGGGTGCCACCA
* **
651179 ACTCT-TGTGGACTTTAACTATGGTGCCACCAACTTGTGTGGACTTTGACTAGGGTGCCACCAAC
1 ACT-TGTGTGGACTTTAACTATGGTGCCACCAACTAGTGTGGACTTTGAAAAGGGTGCCACCAAC
*
651243 TCGTGTGGACTTTGAATAGGGTGCCACCA
65 TTGTGTGGACTTTGAATAGGGTGCCACCA
* * * *
651272 ACTTGTGTGGACTTTAACTATGGTGCCACCAACTCGTGTAGAGTTTGAAAAGGTTGCCACCAACT
1 ACTTGTGTGGACTTTAACTATGGTGCCACCAACTAGTGTGGACTTTGAAAAGGGTGCCACCAACT
* * *
651337 TATGTGGACTTTGACTGGGGTGCCACCA
66 TGTGTGGACTTTGAATAGGGTGCCACCA
* * *
651365 A-TGTGTGTGGACTTTGAA-TAGGGTGGCACCGACTAGTGTGGACTTTGGAAAAGG
1 ACT-TGTGTGGACTTT-AACTATGGTGCCACCAACTAGTGTGGACTTT-GAAAAGG
651419 TTTGGTTACC
Statistics
Matches: 206, Mismatches: 28, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
92 2 0.01
93 151 0.73
94 11 0.05
97 1 0.00
98 40 0.19
99 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
ACTTGTGTGGACTTTAACTATGGTGCCACCAACTAGTGTGGACTTTGAAAAGGGTGCCACCAACT
TGTGTGGACTTTGAATAGGGTGCCACCA
Found at i:651460 original size:37 final size:37
Alignment explanation
Indices: 651391--651495 Score: 131
Period size: 37 Copynumber: 2.8 Consensus size: 37
651381 AATAGGGTGG
* * *
651391 CACCGACTAGTGTGGACTTTGGAAAA-GGTTTGGTTAC
1 CACCGACTTGTGTGGACTTT-AAAAATGATTTGGTTAC
** *
651428 CATTGACTTGTGTGGACTTTAAAAATGATTTGGTTGC
1 CACCGACTTGTGTGGACTTTAAAAATGATTTGGTTAC
*
651465 CACCGACTTGTGTAGACTTTAAAAATGATTT
1 CACCGACTTGTGTGGACTTTAAAAATGATTT
651496 ACTTTGTGTG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
36 4 0.07
37 54 0.93
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (37 bp):
CACCGACTTGTGTGGACTTTAAAAATGATTTGGTTAC
Found at i:651780 original size:13 final size:13
Alignment explanation
Indices: 651762--651797 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
651752 TTTTGACAAA
651762 TTTTGACAAAAGT
1 TTTTGACAAAAGT
*
651775 TTTTGACACAAGT
1 TTTTGACAAAAGT
*
651788 TCTTGACAAA
1 TTTTGACAAA
651798 GATTTTGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (13 bp):
TTTTGACAAAAGT
Found at i:651798 original size:25 final size:23
Alignment explanation
Indices: 651747--651805 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
651737 CACTAGACTT
651747 AAAGATTTTGACAAATTTTGACA
1 AAAGATTTTGACAAATTTTGACA
*
651770 AAAGTTTTTGACACAAGTTCTTGAC-
1 AAAGATTTTGACA-AA-TT-TTGACA
651795 AAAGATTTTGA
1 AAAGATTTTGA
651806 TAAAGATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 12 0.39
24 2 0.06
25 12 0.39
26 5 0.16
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (23 bp):
AAAGATTTTGACAAATTTTGACA
Found at i:651810 original size:12 final size:12
Alignment explanation
Indices: 651747--651813 Score: 68
Period size: 12 Copynumber: 5.6 Consensus size: 12
651737 CACTAGACTT
651747 AAAGATTTTGAC
1 AAAGATTTTGAC
651759 -AA-ATTTTGAC
1 AAAGATTTTGAC
*
651769 AAAAGTTTTTGAC
1 -AAAGATTTTGAC
651782 ACAAG-TTCTTGAC
1 A-AAGATT-TTGAC
*
651795 AAAGATTTTGAT
1 AAAGATTTTGAC
651807 AAAGATT
1 AAAGATT
651814 ATTAGCAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
10 8 0.17
11 2 0.04
12 19 0.40
13 18 0.38
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (12 bp):
AAAGATTTTGAC
Found at i:651929 original size:15 final size:16
Alignment explanation
Indices: 651909--651938 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
651899 ATTTCAACAA
651909 ATGTTTT-CTTGACAC
1 ATGTTTTACTTGACAC
651924 ATGTTTTACTTGACA
1 ATGTTTTACTTGACA
651939 AAGATTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (16 bp):
ATGTTTTACTTGACAC
Found at i:653231 original size:34 final size:34
Alignment explanation
Indices: 653193--653259 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
653183 TTTGAAAAGG
*
653193 AACTTTGTACATTTTCGATTTGCCACTTGTTGTA
1 AACTTTGTACATTTTCAATTTGCCACTTGTTGTA
653227 AACTTTGTACATTTTCAATTTGCCACTTGTTGT
1 AACTTTGTACATTTTCAATTTGCCACTTGTTGT
653260 TAGGCATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (34 bp):
AACTTTGTACATTTTCAATTTGCCACTTGTTGTA
Found at i:655801 original size:34 final size:34
Alignment explanation
Indices: 655763--655829 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
655753 TTTGAAAAGG
*
655763 AACTTTGTACATTTTCGATTTGCCACTTGTTGTA
1 AACTTTGTACATTTTCAATTTGCCACTTGTTGTA
655797 AACTTTGTACATTTTCAATTTGCCACTTGTTGT
1 AACTTTGTACATTTTCAATTTGCCACTTGTTGT
655830 TAGGCATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (34 bp):
AACTTTGTACATTTTCAATTTGCCACTTGTTGTA
Found at i:671086 original size:58 final size:58
Alignment explanation
Indices: 670996--671105 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 58
670986 GAAGAATAAA
**
670996 GCTTGGAGCCCAATTCGTATGTCCAAGAAGAGTGAAGCCCAATTTGCATATATTCATG
1 GCTTGGAGCCCAATTCACATGTCCAAGAAGAGTGAAGCCCAATTTGCATATATTCATG
* *
671054 GCTTGGAGCCCAATTCACATGTCCAAGGAGAGTGGAGCCCAATTTGCATATA
1 GCTTGGAGCCCAATTCACATGTCCAAGAAGAGTGAAGCCCAATTTGCATATA
671106 CTTATGGGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (58 bp):
GCTTGGAGCCCAATTCACATGTCCAAGAAGAGTGAAGCCCAATTTGCATATATTCATG
Found at i:677236 original size:31 final size:31
Alignment explanation
Indices: 677169--677385 Score: 172
Period size: 31 Copynumber: 6.9 Consensus size: 31
677159 CAACCAAACA
* *
677169 TTTTCAAAAGCCCGCACGAGTTGGTGGCACCC
1 TTTTC-AAAGTCCACACGAGTTGGTGGCACCC
*
677201 -TTTCAAAGTCCACACGAGTTGGCGGCACCC
1 TTTTCAAAGTCCACACGAGTTGGTGGCACCC
* * *
677231 TTTTCAAAGTCCACACAAGTTGGTGACAACC
1 TTTTCAAAGTCCACACGAGTTGGTGGCACCC
* *
677262 TCTTCTTAAG-CCTACACGAGTTGGTGGCAACCC
1 TTTTC-AAAGTCC-ACACGAGTTGGTGGC-ACCC
* * *
677295 -TTTCAAATGTCCACACTAGTTAGTGGCAACC
1 TTTTCAAA-GTCCACACGAGTTGGTGGCACCC
* * * * *
677326 TCTTCTTAAG-CCTTCATGAGCTGGTGGCACCC
1 TTTTC-AAAGTCC-ACACGAGTTGGTGGCACCC
* **
677358 TTTTCAAAGTTCACATAAGTTGGTGGCA
1 TTTTCAAAGTCCACACGAGTTGGTGGCA
677386 ACCAAACCTC
Statistics
Matches: 144, Mismatches: 31, Indels: 21
0.73 0.16 0.11
Matches are distributed among these distances:
30 23 0.16
31 59 0.41
32 55 0.38
33 7 0.05
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (31 bp):
TTTTCAAAGTCCACACGAGTTGGTGGCACCC
Found at i:677282 original size:63 final size:63
Alignment explanation
Indices: 677169--677388 Score: 250
Period size: 64 Copynumber: 3.5 Consensus size: 63
677159 CAACCAAACA
* * * * * *
677169 TTTTCAAAAGCCCGCACGAGTTGGTGGCACCCT-TTC-AAAGTCC-ACACGAGTTGGCGGCACCC
1 TTTTC-AAAGTCCACACAAGTTGGTGGCAACCTCTTCTTAAG-CCTACACGAGTTGGTGGCACCC
*
677231 TTTTCAAAGTCCACACAAGTTGGTGACAACCTCTTCTTAAGCCTACACGAGTTGGTGGCAACCC
1 TTTTCAAAGTCCACACAAGTTGGTGGCAACCTCTTCTTAAGCCTACACGAGTTGGTGGC-ACCC
* * * * *
677295 -TTTCAAATGTCCACACTAGTTAGTGGCAACCTCTTCTTAAGCCTTCATGAGCTGGTGGCACCC
1 TTTTCAAA-GTCCACACAAGTTGGTGGCAACCTCTTCTTAAGCCTACACGAGTTGGTGGCACCC
* *
677358 TTTTCAAAGTTCACATAAGTTGGTGGCAACC
1 TTTTCAAAGTCCACACAAGTTGGTGGCAACC
677389 AAACCTCTCC
Statistics
Matches: 135, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
61 22 0.16
62 10 0.07
63 47 0.35
64 56 0.41
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (63 bp):
TTTTCAAAGTCCACACAAGTTGGTGGCAACCTCTTCTTAAGCCTACACGAGTTGGTGGCACCC
Found at i:677293 original size:32 final size:32
Alignment explanation
Indices: 677183--677388 Score: 158
Period size: 32 Copynumber: 6.6 Consensus size: 32
677173 CAAAAGCCCG
*
677183 CACGAGTTGGTGGCACCCT-TTC-AAAGTCCA
1 CACGAGTTGGTGGCAACCTCTTCTAAAGTCCA
* * *
677213 CACGAGTTGGCGGCACCCTTTTC-AAAGTCCA
1 CACGAGTTGGTGGCAACCTCTTCTAAAGTCCA
* * *
677244 CACAAGTTGGTGACAACCTCTTCTTAAG-CCTA
1 CACGAGTTGGTGGCAACCTCTTCTAAAGTCC-A
677276 CACGAGTTGGTGGCAACC-CTT-TCAAATGTCCA
1 CACGAGTTGGTGGCAACCTCTTCT-AAA-GTCCA
* * * *
677308 CACTAGTTAGTGGCAACCTCTTCTTAAG-CCTT
1 CACGAGTTGGTGGCAACCTCTTCTAAAGTCC-A
* * * * *
677340 CATGAGCTGGTGGCACCCTTTTC-AAAGTTCA
1 CACGAGTTGGTGGCAACCTCTTCTAAAGTCCA
**
677371 CATAAGTTGGTGGCAACC
1 CACGAGTTGGTGGCAACC
677389 AAACCTCTCC
Statistics
Matches: 140, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
30 19 0.14
31 56 0.40
32 57 0.41
33 7 0.05
34 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (32 bp):
CACGAGTTGGTGGCAACCTCTTCTAAAGTCCA
Found at i:677468 original size:65 final size:65
Alignment explanation
Indices: 677369--677495 Score: 150
Period size: 65 Copynumber: 2.0 Consensus size: 65
677359 TTTCAAAGTT
* * * *
677369 CACATAAGTTGGTGGCAACCAAACCTCTCCAAAAGCTCA-CACGAGTTAGCGGCACCCAAAAAGC
1 CACAAAAGTTGCTGGCAACCAAACCTCTCCAAAAGC-CAGCACAAGTTAGCAGCACCCAAAAAGC
677433 C
65 C
* * * *
677434 CACAAAAGTTGCTGG-AACTCAAACCTTTCTAAAAGCCAGCACAAGTTGGTAGCACCCAAAAA
1 CACAAAAGTTGCTGGCAAC-CAAACCTCTCCAAAAGCCAGCACAAGTTAGCAGCACCCAAAAA
677496 ACCACACGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
64 5 0.10
65 47 0.90
ACGTcount: A:0.38, C:0.29, G:0.17, T:0.16
Consensus pattern (65 bp):
CACAAAAGTTGCTGGCAACCAAACCTCTCCAAAAGCCAGCACAAGTTAGCAGCACCCAAAAAGCC
Found at i:685065 original size:15 final size:15
Alignment explanation
Indices: 685047--685100 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
685037 CTTCTTCTCT
685047 CCTCCTTCTATCATC
1 CCTCCTTCTATCATC
*
685062 CCTCCTCTCTCTATTATC
1 CCT-C-CT-TCTATCATC
*
685080 TCTCCTTCTATCATC
1 CCTCCTTCTATCATC
685095 CCTCCT
1 CCTCCT
685101 ATCTCTACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 16 0.50
16 3 0.09
17 3 0.09
18 10 0.31
ACGTcount: A:0.11, C:0.46, G:0.00, T:0.43
Consensus pattern (15 bp):
CCTCCTTCTATCATC
Found at i:685068 original size:18 final size:18
Alignment explanation
Indices: 685045--685100 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
685035 ATCTTCTTCT
685045 CTCCTCCTTCTATCATCC
1 CTCCTCCTTCTATCATCC
*
685063 CTCCT-CTCTCTATTAT--
1 CTCCTCCT-TCTATCATCC
685079 CT-CTCCTTCTATCATCC
1 CTCCTCCTTCTATCATCC
685096 CTCCT
1 CTCCT
685101 ATCTCTACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 4 0.13
18 14 0.45
ACGTcount: A:0.11, C:0.46, G:0.00, T:0.43
Consensus pattern (18 bp):
CTCCTCCTTCTATCATCC
Found at i:685088 original size:33 final size:33
Alignment explanation
Indices: 685048--685118 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
685038 TTCTTCTCTC
* **
685048 CTCCTTCTATCATCCCTCCTCTCTCTATTATCT
1 CTCCTTCTATCATCCCTCCTATCTCTACAATCT
685081 CTCCTTCTATCATCCCTCCTATCTCTACAATCT
1 CTCCTTCTATCATCCCTCCTATCTCTACAATCT
685114 CTCCT
1 CTCCT
685119 ATCTCTCCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (33 bp):
CTCCTTCTATCATCCCTCCTATCTCTACAATCT
Found at i:685131 original size:12 final size:12
Alignment explanation
Indices: 685114--685148 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
685104 TCTACAATCT
685114 CTCCTATCTCTC
1 CTCCTATCTCTC
685126 CTCCTATCATC-C
1 CTCCTATC-TCTC
685138 CTCCTATCTCT
1 CTCCTATCTCT
685149 TCTTTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:686086 original size:48 final size:48
Alignment explanation
Indices: 686034--686127 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
686024 TGATACCAAT
*
686034 TGATGACAACCAAGAGA-CAAGGTTGCCTAAATAATGATTTTGAGATAG
1 TGATGACAACCAAGA-ACCAAGGTTGCCTAAATAATGATCTTGAGATAG
*
686082 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGAT
1 TGATGACAACCAAGAACCAAGGTTGCCTAAATAATGATCTTGAGAT
686128 GGATTTCTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 1 0.02
48 42 0.98
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (48 bp):
TGATGACAACCAAGAACCAAGGTTGCCTAAATAATGATCTTGAGATAG
Found at i:690911 original size:18 final size:18
Alignment explanation
Indices: 690888--690995 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
690878 ATCTTCTTCT
690888 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
690906 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
690927 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
690948 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
690969 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
690990 CTCCTC
1 CTCCTC
690996 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:690943 original size:42 final size:42
Alignment explanation
Indices: 690891--691009 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
690881 TTCTTCTCTC
*
690891 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
690933 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
690975 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
691010 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:690950 original size:12 final size:11
Alignment explanation
Indices: 690924--690999 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
690914 TCTATTATCT
*
690924 CTCCTGTCTCTC
1 CTCCTATCTC-C
690936 CTCCTATCATCC
1 CTCCTATC-TCC
690948 CTCCTATCT--
1 CTCCTATCTCC
*
690957 CTACTATCT--
1 CTCCTATCTCC
*
690966 CTCCTGTCTCTC
1 CTCCTATCTC-C
690978 CTCCTATCATCC
1 CTCCTATC-TCC
*
690990 CTCCTCTCTC
1 CTCCTATCTC
691000 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:693331 original size:379 final size:379
Alignment explanation
Indices: 692627--693342 Score: 1211
Period size: 379 Copynumber: 1.9 Consensus size: 379
692617 GGTTTTCATC
* *
692627 AGATAGATTTCTAACAACAAACAGAATTATTAATGTAAGAACAGAAATAGAAAGAAGTAGAAAAA
1 AGATAGATTTCTAACAACAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGCAGAAAAA
692692 ATAACAAAACTAGAATAAATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAA
66 ATAACAAAACTAGAATAAATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAA
692757 AGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAA
131 AGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAA
* *
692822 CCTAAGAATCACACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTCCCCTTCCAAA
196 CCTAAGAATCACACTCTCACACAAAATGTGTTTAATCTGAAAATATCAATGTCTCCCCCTCCAAA
* *
692887 TCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTAT
261 TCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGATAACACAAACCCAAAGAGGCTTAT
692952 TATGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTG
326 TATGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTG
* ** *
693006 AGATGGATTTCTAACATTAAACAGAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAGAAAAA
1 AGATAGATTTCTAACAACAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGCAGAAAAA
* ** **
693071 ATAACAAAA-TGGAATGGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAA
66 ATAACAAAACTAGAATAAATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAA
*
693135 AGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAG-AAAATTGGCTCACTCAAGAA
131 AGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAA
* * *
693199 CCTAAGAATCACATTCTGACACAAAAATGTGTTTAATCTGAAAATATGAATGTCTTCCCCCTCCA
196 CCTAAGAATCACACTCTCACAC-AAAATGTGTTTAATCTGAAAATATCAATGTC-TCCCCCTCCA
*
693264 AATCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGATAACACAAACCCTAAGAGGCTT
259 AATCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGATAACACAAACCCAAAGAGGCTT
*
693329 ATTATGCTAACAAG
324 ATTATGATAACAAG
693343 CCCAACTCTT
Statistics
Matches: 314, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
377 40 0.13
378 122 0.39
379 152 0.48
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (379 bp):
AGATAGATTTCTAACAACAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGCAGAAAAA
ATAACAAAACTAGAATAAATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAA
AGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAA
CCTAAGAATCACACTCTCACACAAAATGTGTTTAATCTGAAAATATCAATGTCTCCCCCTCCAAA
TCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGATAACACAAACCCAAAGAGGCTTAT
TATGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTG
Found at i:697977 original size:42 final size:42
Alignment explanation
Indices: 697922--698040 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
697912 TTCTTCTCTC
* *
697922 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
697964 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
698006 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
698041 TTAAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:697981 original size:12 final size:11
Alignment explanation
Indices: 697955--698030 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
697945 TCTATTATCT
*
697955 CTCCTGTCTCTC
1 CTCCTATCTC-C
697967 CTCCTATCATCC
1 CTCCTATC-TCC
697979 CTCCTATCT--
1 CTCCTATCTCC
*
697988 CTACTATCT--
1 CTCCTATCTCC
*
697997 CTCCTGTCTCTC
1 CTCCTATCTC-C
698009 CTCCTATCATCC
1 CTCCTATC-TCC
*
698021 CTCCTCTCTC
1 CTCCTATCTC
698031 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:697982 original size:24 final size:24
Alignment explanation
Indices: 697946--698031 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
697936 CCTCCTCTCT
* *
697946 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
697970 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
697991 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
698012 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
698032 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:698006 original size:18 final size:18
Alignment explanation
Indices: 697937--698007 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
697927 CCTGTCATCC
* *
697937 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
697955 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
697977 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
697997 CTCCTGTCTCT
1 CTCCTGTCTCT
698008 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:702869 original size:379 final size:379
Alignment explanation
Indices: 702160--703306 Score: 2039
Period size: 379 Copynumber: 3.0 Consensus size: 379
702150 ACCAAAGCTT
* * * * *
702160 TGATACCAATTGATGACAACCAAGAGA-CAAGGTTGCCTAAATAATGATTTTGAGATAGATTTCT
1 TGATAACAAGTGATGACAACCATGA-ACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
** *
702224 AACAACAAACAGAATTATTAATGTAAGAACAGAAATAGAAAGAAGTAGAAAAAATAACAAAACTA
65 AACATTAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGTAGAAAAAATAACAAAACTA
702289 GAATAGATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
130 GAATAGATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
702354 CACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
195 CACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
702419 ACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTCCCCTTCCAAATCTGTTTACAAG
260 ACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTCCCCTTCCAAATCTGTTTACAAG
702484 AGCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTATTA
325 AGCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTATTA
702539 TGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTA
1 TGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTA
702604 ACATTAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGTAGAAAAAATAACAAAACTAG
66 ACATTAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGTAGAAAAAATAACAAAACTAG
702669 AATAGATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCC
131 AATAGATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCC
702734 ACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACA
196 ACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACA
702799 CTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTCCCCTTCCAAATCTGTTTACAAGA
261 CTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTCCCCTTCCAAATCTGTTTACAAGA
702864 GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTATTA
326 GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTATTA
702918 TGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTA
1 TGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTA
* * *
702983 ACATTAAACAGAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAATAACAAAA-TGG
66 ACATTAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGTAGAAAAAATAACAAAACTAG
**
703047 AATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCC
131 AATAGATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCC
*
703112 ACAAGAGTCTTGGCCTCTTGATAAGATCCAG-AAAATTGGCTCACTCAAGAACCTAAGAATCACA
196 ACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACA
* * * * *
703176 TTCTGACACAAAAATGTGTTTAATCTGAAAATATGAATGTCTTCCCCCTCCAAATCTGTTTACAA
261 CTCTCACAC-AAAATGTGTTTAATCTGCAAATATCAATGTC-TCCCCTTCCAAATCTGTTTACAA
* * *
703241 GAGCTTATATATGCCCTCATAAGCCATAGATAACACAAACCCTAAGAGGCTTATTA
324 GAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTATTA
*
703297 TGCTAACAAG
1 TGATAACAAG
703307 CCCAACTCTT
Statistics
Matches: 742, Mismatches: 23, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
377 40 0.05
378 125 0.17
379 577 0.78
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (379 bp):
TGATAACAAGTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTA
ACATTAAACAGAATTATTAATGCAAGAACAGAAATAGAAAGAAGTAGAAAAAATAACAAAACTAG
AATAGATTAGAGATGAAGGATGGCAACACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCC
ACAAGAGTCTTGGCCTCTTGATAACATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACA
CTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTCCCCTTCCAAATCTGTTTACAAGA
GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCAAAGGGGCTTATTA
Found at i:707280 original size:11 final size:12
Alignment explanation
Indices: 707264--707296 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
707254 TTCACTGAAG
707264 TTCCCTCCTT-C
1 TTCCCTCCTTCC
707275 TTCCCTCCTTCC
1 TTCCCTCCTTCC
*
707287 TTCCATCCTT
1 TTCCCTCCTT
707297 TAGAGTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.03, C:0.52, G:0.00, T:0.45
Consensus pattern (12 bp):
TTCCCTCCTTCC
Found at i:707944 original size:42 final size:42
Alignment explanation
Indices: 707889--708007 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
707879 TTCTTCTCTC
* *
707889 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
707931 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
707973 CTCCTCCTATCATCCATCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
708008 TTGAGGGCTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:707949 original size:24 final size:24
Alignment explanation
Indices: 707913--707998 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
707903 CCTCCTCTCT
* *
707913 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
707937 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
707958 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
707979 CTATCATCCATCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
707999 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 20 0.42
ACGTcount: A:0.12, C:0.44, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:707973 original size:18 final size:18
Alignment explanation
Indices: 707904--707974 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
707894 CCTGTCATCC
* *
707904 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
707922 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
707944 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
707964 CTCCTGTCTCT
1 CTCCTGTCTCT
707975 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:709865 original size:42 final size:42
Alignment explanation
Indices: 709799--709917 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
709789 CAGCCCTCAA
* * *
709799 AGAGAAAGAAGAGAGAGGATGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
709841 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
709883 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
709918 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:709884 original size:24 final size:24
Alignment explanation
Indices: 709808--709893 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
709798 AAGAGAAAGA
* *
709808 AGAGAGAGGATGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
709832 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
709850 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
709874 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
709894 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.44, T:0.12
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:717887 original size:39 final size:39
Alignment explanation
Indices: 717835--717941 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 39
717825 TTCTTCTCTC
*
717835 CTCCTCCTGTCATCCCTCCTCTCTCTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTATCTCTCCTGTCT
*
717874 CTCCTCCTATCATCCCTCCTATCTCAACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCC--TCTC-TCTATCTCTCCTGTCT
*
717916 TTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
717942 TCTTTCTCTT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
39 20 0.33
40 4 0.07
41 4 0.07
42 33 0.54
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (39 bp):
CTCCTCCTATCATCCCTCCTCTCTCTATCTCTCCTGTCT
Found at i:723894 original size:16 final size:14
Alignment explanation
Indices: 723873--723910 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
723863 CATTTTTTTG
723873 TCTTCTTTCTTCTTCT
1 TCTTCTTT-TTCTT-T
723889 TCTTCTTTTTCTTT
1 TCTTCTTTTTCTTT
723903 T-TTCTTTT
1 TCTTCTTTT
723911 GGAAAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.32
14 2 0.09
15 5 0.23
16 8 0.36
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TCTTCTTTTTCTTT
Found at i:723902 original size:6 final size:6
Alignment explanation
Indices: 723847--723910 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
723837 CAAATGCTGG
* * * * *
723847 TTTTTC CTTTT- TTTTTC ATTTT- TTTGTC TTCTTTC TTCTTC TTCTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC
723894 TTTTTC TTTTTTC TTTT
1 TTTTTC -TTTTTC TTTT
723911 GGAAAAACTA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
5 7 0.15
6 28 0.61
7 11 0.24
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:728750 original size:12 final size:11
Alignment explanation
Indices: 728728--728794 Score: 66
Period size: 12 Copynumber: 5.9 Consensus size: 11
728718 AGAGAAAGAA
*
728728 GAGAGAGGAGG
1 GAGATAGGAGG
728739 GATGATAGGAGG
1 GA-GATAGGAGG
728751 AGAGATAGGA--
1 -GAGATAGGAGG
728761 GAGATAGGAGG
1 GAGATAGGAGG
728772 GATGATAGGAGG
1 GA-GATAGGAGG
*
728784 AGAGACAGGAG
1 -GAGATAGGAG
728795 AGATAATAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
9 9 0.19
11 4 0.08
12 31 0.65
13 4 0.08
ACGTcount: A:0.39, C:0.01, G:0.51, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:728768 original size:21 final size:21
Alignment explanation
Indices: 728745--728813 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
728735 GAGGGATGAT
*
728745 AGGAGGAGAGATAGGAGAGAT
1 AGGAGGAGAGATAGGAGAGAG
728766 AGGAGG-GATGATAGGAG-GAG
1 AGGAGGAGA-GATAGGAGAGAG
* **
728786 AGACAGGAGAGATAATAGAGAG
1 AG-GAGGAGAGATAGGAGAGAG
728808 AGGAGG
1 AGGAGG
728814 GATGACAGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
20 6 0.15
21 26 0.67
22 7 0.18
ACGTcount: A:0.42, C:0.01, G:0.48, T:0.09
Consensus pattern (21 bp):
AGGAGGAGAGATAGGAGAGAG
Found at i:728784 original size:24 final size:24
Alignment explanation
Indices: 728757--728803 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
728747 GAGGAGAGAT
* * *
728757 AGGAGAGATAGGAGGGATGATAGG
1 AGGAGAGACAGGAGAGATAATAGG
728781 AGGAGAGACAGGAGAGATAATAG
1 AGGAGAGACAGGAGAGATAATAG
728804 AGAGAGGAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.11
Consensus pattern (24 bp):
AGGAGAGACAGGAGAGATAATAGG
Found at i:728794 original size:42 final size:42
Alignment explanation
Indices: 728748--728827 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
728738 GGATGATAGG
* * *
728748 AGGAGAGATAGGAGAGATAGGAGGGATGATAGGAGGAGAGAC
1 AGGAGAGATAAGAGAGAGAGGAGGGATGACAGGAGGAGAGAC
*
728790 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGGAGAGATAAGAGAGAGAGGAGGGATGACAGGAGGAG
728828 GAGAGAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (42 bp):
AGGAGAGATAAGAGAGAGAGGAGGGATGACAGGAGGAGAGAC
Found at i:728798 original size:33 final size:33
Alignment explanation
Indices: 728718--728799 Score: 128
Period size: 33 Copynumber: 2.5 Consensus size: 33
728708 TAGCCCTCAA
* *
728718 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGAAAGGAGAGATAGGAGGGATGATAGGAGG
*
728751 AGAGATAGGAGAGATAGGAGGGATGATAGGAGG
1 AGAGAAAGGAGAGATAGGAGGGATGATAGGAGG
*
728784 AGAGACAGGAGAGATA
1 AGAGAAAGGAGAGATA
728800 ATAGAGAGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.44, C:0.01, G:0.46, T:0.09
Consensus pattern (33 bp):
AGAGAAAGGAGAGATAGGAGGGATGATAGGAGG
Found at i:729296 original size:13 final size:13
Alignment explanation
Indices: 729278--729303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
729268 TACACAAAGT
729278 ATGTATCGATACA
1 ATGTATCGATACA
729291 ATGTATCGATACA
1 ATGTATCGATACA
729304 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:729301 original size:32 final size:33
Alignment explanation
Indices: 729260--729323 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
729250 TAGCCAAACT
**
729260 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
729292 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
729324 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:731548 original size:21 final size:21
Alignment explanation
Indices: 731515--731564 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
731505 TTGCAAATTG
*
731515 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
731537 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
731558 AAATAAA
1 AAATAAA
731565 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:733378 original size:15 final size:15
Alignment explanation
Indices: 733358--733388 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
733348 TAAAAATATC
*
733358 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
733373 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
733388 C
1 C
733389 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:735488 original size:13 final size:13
Alignment explanation
Indices: 735450--735488 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
735440 TATTTTTCTT
*
735450 TGTATCGATACAA
1 TGTATCGATACAG
735463 TGTATCGATACAG
1 TGTATCGATACAG
735476 TGTATCGATACAG
1 TGTATCGATACAG
735489 GGGGATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:738062 original size:13 final size:13
Alignment explanation
Indices: 738044--738069 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
738034 TACACAAAGT
738044 ATGTATCGATACA
1 ATGTATCGATACA
738057 ATGTATCGATACA
1 ATGTATCGATACA
738070 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:738067 original size:32 final size:33
Alignment explanation
Indices: 738026--738089 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
738016 TAGCCAAACT
**
738026 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
738058 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
738090 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:752715 original size:42 final size:42
Alignment explanation
Indices: 752660--752778 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
752650 TTCTTCTCTC
* *
752660 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
752702 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
752744 CTCCTCATATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
752779 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:752720 original size:24 final size:24
Alignment explanation
Indices: 752684--752769 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
752674 CCTCCTCTCT
* *
752684 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
752708 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
752729 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
752750 ATATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
752770 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 13 0.27
22 5 0.10
24 21 0.44
ACGTcount: A:0.12, C:0.44, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:752744 original size:18 final size:18
Alignment explanation
Indices: 752675--752745 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
752665 CCTGTCATCC
* *
752675 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
752693 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
752715 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
752735 CTCCTGTCTCT
1 CTCCTGTCTCT
752746 CCTCATATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:762315 original size:9 final size:9
Alignment explanation
Indices: 762303--762363 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
762293 GTCTCTCTAT
*
762303 TATCTCTTC
1 TATCTCTCC
762312 TATCTCTCC
1 TATCTCTCC
* *
762321 T-CCTAT-C
1 TATCTCTCC
*
762328 -ATCCCTCC
1 TATCTCTCC
*
762336 TATCTCTAC
1 TATCTCTCC
762345 TATCTCTCC
1 TATCTCTCC
762354 TATCTCTCC
1 TATCTCTCC
762363 T
1 T
762364 CCTATCGTCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (9 bp):
TATCTCTCC
Found at i:762326 original size:12 final size:12
Alignment explanation
Indices: 762311--762384 Score: 65
Period size: 12 Copynumber: 6.7 Consensus size: 12
762301 ATTATCTCTT
762311 CTATCTCTCCTC
1 CTATCTCTCCTC
762323 CTATCATC-CCTC
1 CTATC-TCTCCTC
*
762335 CTA--TCT-CTA
1 CTATCTCTCCTC
762344 CTA--TCT-CTC
1 CTATCTCTCCTC
762353 CTATCTCTCCTC
1 CTATCTCTCCTC
762365 CTATCGTC-CCTC
1 CTATC-TCTCCTC
762377 CTATCTCT
1 CTATCTCT
762385 TCTTTCTCTT
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
9 15 0.28
11 5 0.09
12 29 0.55
13 4 0.08
ACGTcount: A:0.12, C:0.46, G:0.01, T:0.41
Consensus pattern (12 bp):
CTATCTCTCCTC
Found at i:762330 original size:42 final size:42
Alignment explanation
Indices: 762266--762394 Score: 170
Period size: 42 Copynumber: 3.1 Consensus size: 42
762256 TCTTCCATCT
* * * * *
762266 TCTTCTCTC-CTCCTCCTGTCATCCCTCGTCTCTCTATTATC
1 TCTTCTATCTCTCCTCCTATCATCCCTCCTATCTCTACTATC
762307 TCTTCTATCTCTCCTCCTATCATCCCTCCTATCTCTACTATC
1 TCTTCTATCTCTCCTCCTATCATCCCTCCTATCTCTACTATC
* * * *
762349 TCTCCTATCTCTCCTCCTATCGTCCCTCCTATCTCTTCTTTC
1 TCTTCTATCTCTCCTCCTATCATCCCTCCTATCTCTACTATC
762391 TCTT
1 TCTT
762395 TGAGGGCTAC
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 8 0.10
42 69 0.90
ACGTcount: A:0.09, C:0.43, G:0.02, T:0.45
Consensus pattern (42 bp):
TCTTCTATCTCTCCTCCTATCATCCCTCCTATCTCTACTATC
Found at i:768078 original size:159 final size:159
Alignment explanation
Indices: 767667--768975 Score: 1038
Period size: 159 Copynumber: 8.3 Consensus size: 159
767657 TTTACATTAG
* * * * *
767667 ATTCTCATAATAATCTCAATTCTTTTCATGAATT-TGCAACAAAAACATATTATACCT-TTTGGG
1 ATTCTCATAATAATCTCCATTCTTTTCATG-ATTGGGCAACAAAAACACATTCT-CCTCATTGGG
* * * * ** *
767730 ATACATAATATTCATGCATT-GTTCTTATGAGAAAAGCATTTT-TTTCCTTCATTTTCCATAGAA
64 ATACATAATATTGATGCTTTGGTT-TCATAAGAAAAGC-TTTTCTTTCCACCATTTTCCTTAGAA
* * *
767793 TCAAAGTTCATCCCTC-AATGAGACAAACATGG
127 TCAAAGTTCATCTCTCAAATAAGACAAACATGA
* * * * *** * * *
767825 ATTCT-A-GATAATCTCCTTTCTTTTCATGGTTGGGC-ACATAAAGGTAGTTCACCTTATTGGAA
1 ATTCTCATAATAATCTCCATTCTTTTCATGATTGGGCAACAAAAACACA-TTCTCCTCATTGGGA
* * * *
767887 TACATGATATTAATGCTTCT-ATTTCATAAGAAAAGCTTTTCTTTCCACTATTTTCCTTAGAATC
65 TACATAATATTGATGCTT-TGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATC
* *
767951 AAAGCTCATCTCTCAGATAAGACAAACATGA
129 AAAGTTCATCTCTCAAATAAGACAAACATGA
* * * ** * * *
767982 ATTCTCATAATAATCTCCATTCTCTTCATGATTGAGCATCGTAAATACTTTCTCCACATTGGGAT
1 ATTCTCATAATAATCTCCATTCTTTTCATGATTGGGCAACAAAAACACATTCTCCTCATTGGGAT
* ** * * *
768047 ACACAATATCAAAGCTTTGGTTTCATAAGAAAAGCTTTTCTTTTCACCATTTTTCTTAGAATCAA
66 ACATAATATTGATGCTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAA
* * * * * * * *
768112 AGTTTATTTGTCAAGTGAGATAAACTTGG
131 AGTTCATCTCTCAAATAAGACAAACATGA
** * * * *
768141 ATTCTGGTAATAATTTTCATT-TTTTCCATGATTGGGC-ACTATAAACACATTCTCCTCATT-AG
1 ATTCTCATAATAATCTCCATTCTTTT-CATGATTGGGCAAC-AAAAACACATTCTCCTCATTGGG
* * * * * * *
768203 ATACATGATATTGATGCTTTGGTTTCTATAATAAGAGCTTTTATTTCCTCCATTTGCCTTTGAAT
64 ATACATAATATTGATGCTTTGGTTTC-ATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAAT
* *
768268 CAAAGCT-AGT-TCATCAAATAAGACAAACATGG
128 CAAAGTTCA-TCTC-TCAAATAAGACAAACATGA
* * * * * *
768300 A-TCTCATAACAATATCAATTCTTTTCATGATTGGGCACCATAAACACATTCTCCTCGTTGGGAT
1 ATTCTCATAATAATCTCCATTCTTTTCATGATTGGGCAACAAAAACACATTCTCCTCATTGGGAT
* * * *** * * * *
768364 ACATGATATTGATTC-TTGTTTTTGCAAGAAAAACTTATCTTTCCACCATTTTCCTTGGAGTCAA
66 ACATAATATTGATGCTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAA
* * *
768428 AGTTCATCTTTCAAATGAGACAAACATGG
131 AGTTCATCTCTCAAATAAGACAAACATGA
*
768457 ATTCTCATAATAATCTTCATTCTTTTCATTGATTGGGCAACAAAAACACATTCTCCTCATTGAGG
1 ATTCTCATAATAATCTCCATTCTTTTCA-TGATTGGGCAACAAAAACACATTCTCCTCATTG-GG
* * ** * * * *
768522 -TACATGATATTGATGCTTTGGATTCGCAAGAAAA-ATTCTCTTTCTACCATTTTCTTTAGAATC
64 ATACATAATATTGATGCTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATC
* *
768585 AAAGTTCATCCCTCAAATTAGACAAACATGA
129 AAAGTTCATCTCTCAAATAAGACAAACATGA
* * * * * * * **
768616 ATTCCCATATTAATCTACATTTTTTTTCATGATTTGGCAACAAAAACACTTTATAATCATTGGGA
1 ATTCTCATAATAATCTCCA-TTCTTTTCATGATTGGGCAACAAAAACACATTCTCCTCATTGGGA
* * * * ** *
768681 TCCATAATATTGATGCTTTGG-TT--TGACAAAA-CTTTTCTTTCCACTATTTTTTTTAGAATTA
65 TACATAATATTGATGCTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCA
* * * *
768742 ATGTTTATCGCTTAAATAAGACCAACACA-G-
130 AAGTTCATCTCTCAAATAAGA-CAA-ACATGA
* * *
768772 ATTCTCATAATAATCTCTATTCTTTTCATGATTGGGCAATAAAAACACATTCTCCTGATTGGGAT
1 ATTCTCATAATAATCTCCATTCTTTTCATGATTGGGCAACAAAAACACATTCTCCTCATTGGGAT
* * * * *
768837 ACATAATATTGATGCTTTAGTTTCACAAG-AAATCTTTTTTTTTTCTCACCACTTTCCTTAGAAT
66 ACATAATATTGATGCTTTGGTTTCATAAGAAAAGC--TTTTCTTTC-CACCATTTTCCTTAGAAT
* * *
768901 CAAAGTTCATC-CTTTAAATGAGACAAAC-TTA
128 CAAAGTTCATCTC-TCAAATAAGACAAACATGA
*
768932 GATTCTCATTAA-AATCTCCATT-TTTTCCATGATTAGGCAACAAA
1 -ATTCTCA-TAATAATCTCCATTCTTTT-CATGATTGGGCAACAAA
768976 TATATGATCT
Statistics
Matches: 917, Mismatches: 193, Indels: 79
0.77 0.16 0.07
Matches are distributed among these distances:
155 73 0.08
156 147 0.16
157 82 0.09
158 117 0.13
159 388 0.42
160 45 0.05
161 62 0.07
162 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.38
Consensus pattern (159 bp):
ATTCTCATAATAATCTCCATTCTTTTCATGATTGGGCAACAAAAACACATTCTCCTCATTGGGAT
ACATAATATTGATGCTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAA
AGTTCATCTCTCAAATAAGACAAACATGA
Found at i:768366 original size:317 final size:318
Alignment explanation
Indices: 767779--768928 Score: 898
Period size: 317 Copynumber: 3.6 Consensus size: 318
767769 TTTTTTCCTT
* ** * *
767779 CATTTTCCATAGAATCAAAGTTCATCCCTC-AATGAGACAAACATGGATTCT-A-GATAATCTCC
1 CATTTTCCTTAGAATCAAAGTTCATCTTTCAAATGAGACAAACATGGATTCTCATAATAATCTTC
* * * *** * * *
767841 TTTCTTTTCA-TGGTTGGGC-ACATAAAGGTAGTTCACCTTATTG-GAATACATGATATTAATGC
66 ATTCTTTTCATTGATTGGGCAACAAAAACACA-TTCTCCTCATTGAG-ATACATGATATTGATGC
* * * * *
767903 TTCT-ATTTCATAAGAAAAGCTTTTCTTTCCACTATTTTCCTTAGAATCAAAGCTCATCTCTCAG
129 TT-TGGTTTCATAAGAAAAGCTTTTATTTCCACCATTTGCCTTAGAATCAAAGCTCATCTCTCAA
* * * * * * *
767967 ATAAGACAAACATGAATTCTCATAATAATCTCCATTCTCTTCATGATTGAGCATCGTAAATACTT
193 ATAAGACAAACATGAATTCTCATAACAATATCAATTCTCTTCATGATTGAGCACCATAAACACAT
* * * *
768032 TCTCCACATTGGGATACACAATATCAAAGCTTTGGTTTCATAAGAAAAGCTTTTCTTTTCAC
258 TCTCCACATTGGGATACACAATATCAAAGC-TTGGTTTCACAAGAAAAACTTATCTTTCCAC
* * * * * ** *
768094 CATTTTTCTTAGAATCAAAGTTTAT-TTGTCAAGTGAGATAAACTTGGATTCTGGTAATAATTTT
1 CATTTTCCTTAGAATCAAAGTTCATCTT-TCAAATGAGACAAACATGGATTCTCATAATAATCTT
*
768158 CATT-TTTTCCA-TGATTGGGC-ACTATAAACACATTCTCCTCATT-AGATACATGATATTGATG
65 CATTCTTTT-CATTGATTGGGCAAC-AAAAACACATTCTCCTCATTGAGATACATGATATTGATG
* * * *
768219 CTTTGGTTTCTATAATAAGAGCTTTTATTTCCTCCATTTGCCTTTGAATCAAAGCT-AGT-TCAT
128 CTTTGGTTTC-ATAAGAAAAGCTTTTATTTCCACCATTTGCCTTAGAATCAAAGCTCA-TCTC-T
* * *
768282 CAAATAAGACAAACATGGA-TCTCATAACAATATCAATTCTTTTCATGATTGGGCACCATAAACA
190 CAAATAAGACAAACATGAATTCTCATAACAATATCAATTCTCTTCATGATTGAGCACCATAAACA
* * ** ** ** * **
768346 CATTCTCCTCGTTGGGATACATGATATTGATTCTTGTTTTTGCAAGAAAAACTTATCTTTCCAC
255 CATTCTCCACATTGGGATACACAATATCAAAGCTTGGTTTCACAAGAAAAACTTATCTTTCCAC
* *
768410 CATTTTCCTTGGAGTCAAAGTTCATCTTTCAAATGAGACAAACATGGATTCTCATAATAATCTTC
1 CATTTTCCTTAGAATCAAAGTTCATCTTTCAAATGAGACAAACATGGATTCTCATAATAATCTTC
*
768475 ATTCTTTTCATTGATTGGGCAACAAAAACACATTCTCCTCATTGAGGTACATGATATTGATGCTT
66 ATTCTTTTCATTGATTGGGCAACAAAAACACATTCTCCTCATTGAGATACATGATATTGATGCTT
* ** * * * * * * * * *
768540 TGGATTCGCAAGAAAA-ATTCTCTTTCTACCATTTTCTTTAGAATCAAAGTTCATCCCTCAAATT
131 TGGTTTCATAAGAAAAGCTTTTATTTCCACCATTTGCCTTAGAATCAAAGCTCATCTCTCAAATA
* ** * * * * * * *
768604 AGACAAACATGAATTCCCATATTAATCTACATTTTTTTTCATGATTTG-GCAACAAAAACACTTT
196 AGACAAACATGAATTCTCATAACAATAT-CAATTCTCTTCATGA-TTGAGCACCATAAACACATT
* * * * ** * * *
768668 AT-AATCATTGGGATCCATAATATTGATGCTTTGGTTTGAC----AAAACTTTTCTTTCCAC
259 CTCCA-CATTGGGATACACAATATCAAAGC-TTGGTTTCACAAGAAAAACTTATCTTTCCAC
* ** * * * * * * **
768725 TATTTTTTTTAGAATTAATGTTTATCGCTT-AAATAAGACCAACACAGATTCTCATAATAATC-T
1 CATTTTCCTTAGAATCAAAGTTCATC-TTTCAAATGAGACAAACATGGATTCTCATAATAATCTT
* * * *
768788 CTATTCTTTTCA-TGATTGGGCAATAAAAACACATTCTCCTGATTGGGATACATAATATTGATGC
65 C-ATTCTTTTCATTGATTGGGCAACAAAAACACATTCTCCTCATTGAGATACATGATATTGATGC
* * * * *
768852 TTTAGTTTCACAAG-AAATCTTTTTTTTTTCTCACCACTTT-CCTTAGAATCAAAGTTCATC-CT
129 TTTGGTTTCATAAGAAAAGC--TTTTATTTC-CACCA-TTTGCCTTAGAATCAAAGCTCATCTC-
* *
768914 TTAAATGAGACAAAC
189 TCAAATAAGACAAAC
768929 TTAGATTCTC
Statistics
Matches: 673, Mismatches: 131, Indels: 60
0.78 0.15 0.07
Matches are distributed among these distances:
313 3 0.00
314 60 0.09
315 96 0.14
316 155 0.23
317 177 0.26
318 166 0.25
319 16 0.02
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (318 bp):
CATTTTCCTTAGAATCAAAGTTCATCTTTCAAATGAGACAAACATGGATTCTCATAATAATCTTC
ATTCTTTTCATTGATTGGGCAACAAAAACACATTCTCCTCATTGAGATACATGATATTGATGCTT
TGGTTTCATAAGAAAAGCTTTTATTTCCACCATTTGCCTTAGAATCAAAGCTCATCTCTCAAATA
AGACAAACATGAATTCTCATAACAATATCAATTCTCTTCATGATTGAGCACCATAAACACATTCT
CCACATTGGGATACACAATATCAAAGCTTGGTTTCACAAGAAAAACTTATCTTTCCAC
Found at i:769531 original size:159 final size:157
Alignment explanation
Indices: 768998--769680 Score: 516
Period size: 159 Copynumber: 4.3 Consensus size: 157
768988 AAATGCAATA
* * * * *
768998 TTTCTTTCCACCA-TTTTCTCTAGAATCAAAGTTCGTCCCTCAAATAAGACAAACATGCATTTTA
1 TTTCTTTCCACCATTTTTCT-TAGAATCAAAGTT-ATCCTTCAAATAAGACAAACATGGATTCTC
* * * ** * * * ** * **
769062 ATCACAATGTCCATTCTTTTTGTTATTGGACACCATAAACACA-T-CGTTC-TTGGGATACACTA
64 ATTATAATCTCCATTCTTTTCATGATTGGGCAACA-AAACACACTCCCCTCATTAGGATACAGGA
* ** *
769124 TATTGAGGCTTTGGTTTCAG-AAGAAAAGC-
128 TATTAATACTTTGGTTTC-GTAAGGAAAGCT
769153 TTTCTTTCCACCATTTTTCTTAGAATCAAAGTTCATTCCTT-AAATAAGACAAACATGGATTCTC
1 TTTCTTTCCACCATTTTTCTTAGAATCAAAGTT-A-TCCTTCAAATAAGACAAACATGGATTCTC
** * * *
769217 ATTATAATCTCCA-TCCCTTCTATGATTGGGCAACAAAACACACTCTCCTTATTAGGGTACAGGA
64 ATTATAATCTCCATTCTTTTC-ATGATTGGGCAACAAAACACACTCCCCTCATTAGGATACAGGA
* *
769281 TATTAATGCTTTTGTTTCGTAAGGAAAGCT
128 TATTAATACTTTGGTTTCGTAAGGAAAGCT
* * * * * * * *
769311 CTTATTTCCACAATTTTTCTTAGAATTAAGGTTTAT-CTCTCAAATAAGAAAAACTTAGATTCTC
1 TTTCTTTCCACCATTTTTCTTAGAATCAAAG-TTATCCT-TCAAATAAGACAAACATGGATTCTC
* * * * ** *
769375 ATAATAATCTCCATTCTTTTCATGATTTGGCAGCAAATACTCTTTCCCCTCATTCA-GATACATG
64 ATTATAATCTCCATTCTTTTCATGATTGGGCAACAAA-ACACACTCCCCTCATT-AGGATACAGG
* *
769439 ATATTAATACTTTGGTTTTGCT-A-GAAAGATT
127 ATATTAATACTTTGGTTTCG-TAAGGAAAG-CT
* *
769470 TTTCTTTCCACCATTTTCCTTAAAATCAAAGTTAGTCCTTCAAATAAGACAAACATGGATTCTCA
1 TTTCTTTCCACCATTTTTCTTAGAATCAAAGTTA-TCCTTCAAATAAGACAAACATGGATTCTCA
* * * * *
769535 TTATAATCTCCATTCTTTTCTTGATTGGGCAATAAAAACACATTCTCCTCATTGGGATACATGG-
65 TTATAATCTCCATTCTTTTCATGATTGGGCAA-CAAAACACACTCCCCTCATTAGGATACA-GGA
* * *** *
769599 TA-TAGATGCTTTGATTTTACAAGGAAAGCA
128 TATTA-ATACTTTGGTTTCGTAAGGAAAGCT
* * *
769629 TTTC-TTCCCCCTATTTTCCTTAGAATCAAAGTTCATCCCTT-AAATGAGACAA
1 TTTCTTTCCACC-ATTTTTCTTAGAATCAAAGTT-AT-CCTTCAAATAAGACAA
769681 GCTTGGACTT
Statistics
Matches: 421, Mismatches: 80, Indels: 50
0.76 0.15 0.09
Matches are distributed among these distances:
154 11 0.03
155 68 0.16
156 14 0.03
157 34 0.08
158 89 0.21
159 187 0.44
160 18 0.04
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (157 bp):
TTTCTTTCCACCATTTTTCTTAGAATCAAAGTTATCCTTCAAATAAGACAAACATGGATTCTCAT
TATAATCTCCATTCTTTTCATGATTGGGCAACAAAACACACTCCCCTCATTAGGATACAGGATAT
TAATACTTTGGTTTCGTAAGGAAAGCT
Found at i:770215 original size:161 final size:158
Alignment explanation
Indices: 769889--770319 Score: 449
Period size: 161 Copynumber: 2.7 Consensus size: 158
769879 TCTATCGATG
* ***
769889 TTTTGGTTTCTCAAGAAAAGCTTTTCTTT-CACCATTTTCTTTAGAATCAAAGTTTGTCTTTCAA
1 TTTTGGTTT-TCAAGAAAAGCTTTTCTTTCCACCATTTTCATTAGAATCAAAGTTTGTCCCACAA
* * *
769953 ATGAGACAAACATGGATTCTCATAATAATCTACATTCTTTTCATGATTGGTCATCAAAAATACTC
65 ATGAGACAAACATGAATTCTCATAATAATCTACATTCTTTTCATGATAGGTCATCAAAAACACTC
* * *
770018 TCTTCTCATTAGGATACACGATATTGATG
130 TCTTCTCATTACGATACACGATAATGATA
* *
770047 CTTTGGTTTTGCAAGAAAAACTTTTCTTTCCACCATTTTCATTAGAATCAAAGTTTGTCCCACAA
1 TTTTGGTTTT-CAAGAAAAGCTTTTCTTTCCACCATTTTCATTAGAATCAAAGTTTGTCCCAC-A
* ** * * * *
770112 AATGAGATAAAGTTGAATTTTTATAATAATCTTCCATTCTTTTCATGATCAGG-CATCATAAACA
64 AATGAGACAAACATGAATTCTCATAATAATC-TACATTCTTTTCATGAT-AGGTCATCAAAAACA
*
770176 CAT-T-TTCCTCATTACGATACATGATAATGATA
127 C-TCTCTT-CTCATTACGATACACGATAATGATA
* * * * **
770208 TTTTGGTTTTACAAGAAAAGGTTTTCTTTCCACCATTTTCCTTAGAATTAAAGCTCAT-CCATCA
1 TTTTGGTTTT-CAAGAAAAGCTTTTCTTTCCACCATTTTCATTAGAATCAAAGTTTGTCCCA-CA
* * * * * **
770272 AATGTGACAAACATGGATTCTCTTAATAATATCCATTCCATTCATGAT
64 AATGAGACAAACATGAATTCTCATAATAATCTACATTCTTTTCATGAT
770320 TGGAGAAAAA
Statistics
Matches: 225, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 25 0.11
159 44 0.20
160 54 0.24
161 98 0.44
162 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (158 bp):
TTTTGGTTTTCAAGAAAAGCTTTTCTTTCCACCATTTTCATTAGAATCAAAGTTTGTCCCACAAA
TGAGACAAACATGAATTCTCATAATAATCTACATTCTTTTCATGATAGGTCATCAAAAACACTCT
CTTCTCATTACGATACACGATAATGATA
Found at i:774209 original size:24 final size:24
Alignment explanation
Indices: 774176--774261 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
774166 AAGAGAAAGA
*
774176 AGAGAGAGGAGAGATGATAGGAGG
1 AGAGACAGGAGAGATGATAGGAGG
*
774200 AGAGACA-G-GAGA-GAT---AGT
1 AGAGACAGGAGAGATGATAGGAGG
* *
774218 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGAGATGATAGGAGG
*
774242 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGAGATGATAG
774262 AGAGAGGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 8 0.17
19 1 0.02
20 3 0.06
21 6 0.12
22 4 0.08
23 1 0.02
24 25 0.52
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGAGATGATAGGAGG
Found at i:774222 original size:42 final size:42
Alignment explanation
Indices: 774167--774276 Score: 175
Period size: 42 Copynumber: 2.6 Consensus size: 42
774157 TAGCCCTCAA
* * *
774167 AGAGAAAGAAGAGAGAGGAGAGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
774209 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
774251 AGAGATAATAGAGAGAGGAGGGATGA
1 AGAGATAGTAGAGAGAGGAGGGATGA
774277 CATGATGACA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.45, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:785320 original size:21 final size:21
Alignment explanation
Indices: 785294--785337 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
785284 AACCGTACCT
785294 TGACTACTCTTCTTAAGGCTA
1 TGACTACTCTTCTTAAGGCTA
785315 TGACTACTCTTCTTAAGGCTA
1 TGACTACTCTTCTTAAGGCTA
785336 TG
1 TG
785338 GTAAGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (21 bp):
TGACTACTCTTCTTAAGGCTA
Found at i:792857 original size:18 final size:18
Alignment explanation
Indices: 792827--792915 Score: 63
Period size: 18 Copynumber: 4.6 Consensus size: 18
792817 ATCTTCTTCT
792827 CTCCTC-CTCCTATCATCC
1 CTCCTCTCT-CTATCATCC
*
792845 CTCCTCTCTCTATTATCTCTC
1 CTCCTCTCTCTATCA--TC-C
*
792866 CTATCTCTTCTCCTATCATCC
1 CT-CCTC-TCT-CTATCATCC
* *
792887 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATCATCC
*
792905 CTCCTATCTCT
1 CTCCTCTCTCT
792916 TCTCCTATCA
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
18 28 0.49
19 5 0.09
20 5 0.09
21 6 0.11
22 5 0.09
23 3 0.05
24 5 0.09
ACGTcount: A:0.11, C:0.45, G:0.00, T:0.44
Consensus pattern (18 bp):
CTCCTCTCTCTATCATCC
Found at i:792877 original size:12 final size:12
Alignment explanation
Indices: 792862--792942 Score: 58
Period size: 12 Copynumber: 6.2 Consensus size: 12
792852 CTCTATTATC
792862 TCTCCTATCTCT
1 TCTCCTATCTCT
792874 TCTCCTATCATCCCT
1 TCTCCTATC-T--CT
*
792889 CCTCTCTCTAT-TAT
1 --TCTC-CTATCTCT
792903 CTCTCCTATCTCT
1 -TCTCCTATCTCT
792916 TCTCCTATCATC-
1 TCTCCTATC-TCT
*
792928 CCTCCTATCTCT
1 TCTCCTATCTCT
792940 TCT
1 TCT
792943 TTCTCTTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
11 2 0.04
12 32 0.57
13 10 0.18
14 1 0.02
15 2 0.04
16 1 0.02
17 4 0.07
18 4 0.07
ACGTcount: A:0.11, C:0.43, G:0.00, T:0.46
Consensus pattern (12 bp):
TCTCCTATCTCT
Found at i:792890 original size:24 final size:24
Alignment explanation
Indices: 792849--792942 Score: 101
Period size: 24 Copynumber: 4.1 Consensus size: 24
792839 TCATCCCTCC
* *
792849 TCTCTCTATTATCTCTCCTATCTCT
1 TCTC-CTATCATCCCTCCTATCTCT
792874 TCTCCTATCATCCCT-C---CTC-
1 TCTCCTATCATCCCTCCTATCTCT
* *
792893 TCT-CTATTATCTCTCCTATCTCT
1 TCTCCTATCATCCCTCCTATCTCT
792916 TCTCCTATCATCCCTCCTATCTCT
1 TCTCCTATCATCCCTCCTATCTCT
792940 TCT
1 TCT
792943 TTCTCTTTGA
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
18 9 0.16
19 4 0.07
20 3 0.05
22 3 0.05
23 4 0.07
24 30 0.53
25 4 0.07
ACGTcount: A:0.12, C:0.41, G:0.00, T:0.47
Consensus pattern (24 bp):
TCTCCTATCATCCCTCCTATCTCT
Found at i:792948 original size:42 final size:42
Alignment explanation
Indices: 792833--792939 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
792823 TTCTCTCCTC
792833 CTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTT
1 CTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTT
792875 CTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTT
1 CTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTT
*
792917 CTCCTATCATCCCTCCTATCTCT
1 CTCCTATCATCCCTCCTCTCTCT
792940 TCTTTCTCTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTT
Found at i:797332 original size:34 final size:34
Alignment explanation
Indices: 797288--797355 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
797278 AGGGTTGGAA
*
797288 GCCACTTTTAGGGATGAAAACCTAAAAGATAAGT
1 GCCACATTTAGGGATGAAAACCTAAAAGATAAGT
**
797322 GCCACATTTAGGGATGAAAATGTAAAAGATAAGT
1 GCCACATTTAGGGATGAAAACCTAAAAGATAAGT
797356 CTCATAAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.24
Consensus pattern (34 bp):
GCCACATTTAGGGATGAAAACCTAAAAGATAAGT
Found at i:797873 original size:159 final size:155
Alignment explanation
Indices: 797498--797909 Score: 429
Period size: 159 Copynumber: 2.6 Consensus size: 155
797488 AGGGCATTTA
* * *
797498 CAAGAAAAGCTTTGCTTTTTACCATTTTCCTTACAATCAAAGTTTGTCCCTCAATAGAGACAAAC
1 CAAGAAAAGCTTTTCTTTCTACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAT-GAGAC-AAC
* * * * * * *
797563 ATGGATTCTCATTATAATCTCTATT-TTTT-ATTGGTCAACAAAAATCATGTCCTTCTCATTGGG
64 ATGGATTCTTATAATAATCTCCATTCTTTTCATAGGTCAACAAAAAACAAGTCCTTCTCATTAGG
* *
797626 ATACATGATATTGATGCCTTGGTTTTG
129 ATACACGATATTGATACCTTGGTTTTG
*
797653 GAAGAAAAGCTTTAT-TTTCTACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGACAGA
1 CAAGAAAAGCTTT-TCTTTCTACCATTTTCCTTAGAATCAAAGTTTGTCCCTC-AATGAGACA-A
* * * *
797717 CATGGATTCTTATAATAATATCCATTCTTTTCA-AGATTCAACACAATAAACAAGTTCTTTTCAT
63 CATGGATTCTTATAATAATCTCCATTCTTTTCATAG-GTCAACA-AA-AAACAAGTCCTTCTCAT
* *
797781 TAGGATACCCGATATTGATACTTTGGTTTTG
125 TAGGATACACGATATTGATACCTTGGTTTTG
* ** * * * * *
797812 CACGGGAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTATCCCTTAAGTTAGAC-ATA
1 CAAGAAAAGCTTTTCTTTCTACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAA-TGAGACAACA
* *
797876 TGCAGATTCTTGTAATAATCTCCATTCTGTTCAT
65 TG--GATTCTTATAATAATCTCCATTCTTTTCAT
797910 GAATAGGCAC
Statistics
Matches: 213, Mismatches: 31, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
154 1 0.00
155 75 0.35
156 8 0.04
157 11 0.05
158 5 0.02
159 113 0.53
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (155 bp):
CAAGAAAAGCTTTTCTTTCTACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAATGAGACAACAT
GGATTCTTATAATAATCTCCATTCTTTTCATAGGTCAACAAAAAACAAGTCCTTCTCATTAGGAT
ACACGATATTGATACCTTGGTTTTG
Found at i:798025 original size:30 final size:30
Alignment explanation
Indices: 797989--798052 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
797979 AAAGCTTTTT
797989 TATCCACCATATTCTATAGAATTAATGTTC
1 TATCCACCATATTCTATAGAATTAATGTTC
*
798019 TATCCACCATATTTTATAGAATTAATGTTC
1 TATCCACCATATTCTATAGAATTAATGTTC
798049 -ATCC
1 TATCC
798053 CTCAAATAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.12
30 29 0.88
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (30 bp):
TATCCACCATATTCTATAGAATTAATGTTC
Found at i:800662 original size:155 final size:157
Alignment explanation
Indices: 800290--801208 Score: 401
Period size: 158 Copynumber: 5.9 Consensus size: 157
800280 TTTGTGATAG
* * * * * *
800290 GGCAACAAAAACACATTCTCCTTATTGGGATACATGAAATTGATG-ATTTGGTTTTTCAAGAAAA
1 GGCAACACAAATACTTTCTCCTCATT-GGATACACGAAATTGATGTA-TTGGTTTTGCAAGAAAA
* * *
800354 GCTTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGGCCCTCAAACAAGACAAACATTGATTC
64 GCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTC-AACAAGACAAACATGGATTC
* * * * *
800419 TTATAATATTCTCTTTTATTTTCCTGATTA
128 TTATAATAATCTCATTCATTCTCATGATTA
* * * ** * * *
800449 GGCACCATAAATACTCTCTATTCATTGGAATACACCATATTCATGCT-TTGGTTTTGCAAGAAAA
1 GGCAACACAAATACTTTCTCCTCATTGG-ATACACGAAATTGATG-TATTGGTTTTGCAAGAAAA
*
800513 GCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTATCCC-C-A-AA-ACATAACATGGATTC
64 GCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTCAACAAGACA-AACATGGATTC
* *
800574 TTGTAATAATCTCCATTCA-TCTCATGATTG
128 TTATAATAATCT-CATTCATTCTCATGATTA
*
800604 GGCAACACAAATA-TGTTCTCCTCATTAGGATACACGAAATTGATGTAGTGGTTTTGCAAGAAAA
1 GGCAACACAAATACT-TTCTCCTCATT-GGATACACGAAATTGATGTATTGGTTTTGCAAGAAAA
* * *** * * * *
800668 GCTTTTCATTCCATTGTTTCCCTTAG-TTTAAAG-TT-----T-----A-ACAAACTTGGATT-T
64 GCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTCAACAAGACAAACATGGATTCT
** * ** *
800719 TAATAATAATCTCCATTTTTTTTTTTTGTGATTG
129 T-ATAATAATCT-CA---TTCATTCTCATGATTA
** * * * * * *
800753 GGCAACATGAACA-TGTTGTCCTCATTGTGATACATGATATTGATACT-TTGGTTTTG-TAGAAA
1 GGCAACACAAATACT-TTCTCCTCATTG-GATACACGAAATTGAT-GTATTGGTTTTGCAAGAAA
**** * * * * *
800815 AGCTTTTCTTTTTGTCATTTTCCATAGAATCAAAGTTTATCCTTCAA-ATGAGACAAACAAGAAT
63 AGCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTCAACA--AGACAAACATGGAT
** * * * *
800879 TCTCGTAACAAACTCTATTCATT-TTATGATTG
126 TCTTATAATAATCTC-ATTCATTCTCATGATTA
* * * * * * **
800911 GGCAA-AAAAACACATTT-TCCTTATTGGGATACATGATATTGATGTTTTGGTTTCACAAGAAAA
1 GGCAACACAAATAC-TTTCTCCTCATT-GGATACACGAAATTGATGTATTGGTTTTGCAAGAAAA
* * * * * * * *
800974 GCTTTTCTTTCCACCATTTTACTTAGAATTAAAATTCAACCCTCAA-ATGAACAAACTTGGATTC
64 GCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTCAACAAG-ACAAACATGGATTC
* *
801038 TGATAATAATCTCCATTC-TATC-CATGATCA
128 TTATAATAATCT-CATTCAT-TCTCATGATTA
* * ** * * * * * * * ** * *
801068 GCCACCGTAAACACATTCTCCT-ATCTAGGAAACATGATATTGATGCATTTGTTTCACGATAAAA
1 GGCAACACAAATACTTTCTCCTCAT-T-GGATACACGAAATTGATGTATTGGTTTTGCAAGAAAA
* * * * * * *
801132 GCTTTTATTTCCACCATTTTCTTTAGAATCAAAGTTCATCCCTCAATAGAGACAAACTTGGATTC
64 GCTTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTCAACA-AGACAAACATGGATTC
* *
801197 TTGTTATAATCT
128 TTATAATAATCT
801209 TCATGATTTT
Statistics
Matches: 586, Mismatches: 128, Indels: 92
0.73 0.16 0.11
Matches are distributed among these distances:
144 2 0.00
145 21 0.04
146 4 0.01
148 27 0.05
149 57 0.10
150 3 0.01
153 2 0.00
154 10 0.02
155 99 0.17
156 10 0.02
157 71 0.12
158 144 0.25
159 114 0.19
160 1 0.00
161 2 0.00
162 18 0.03
163 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (157 bp):
GGCAACACAAATACTTTCTCCTCATTGGATACACGAAATTGATGTATTGGTTTTGCAAGAAAAGC
TTTTCTTTCAACCATTTTCCTTAGAATCAAAGTTTAGCCCTCAACAAGACAAACATGGATTCTTA
TAATAATCTCATTCATTCTCATGATTA
Found at i:801271 original size:15 final size:15
Alignment explanation
Indices: 801251--801280 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
801241 TTCACAGGGA
801251 TACTTGATATTGAAG
1 TACTTGATATTGAAG
801266 TACTTGATATTGAAG
1 TACTTGATATTGAAG
801281 CTTTGCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (15 bp):
TACTTGATATTGAAG
Found at i:806215 original size:9 final size:9
Alignment explanation
Indices: 806203--806251 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
806193 CTCTCTCTAT
806203 TATCTCTCC
1 TATCTCTCC
806212 TATCTCTCCTC
1 TATCTCT-C-C
*
806223 GTATCTCTAC
1 -TATCTCTCC
*
806233 TATCTCTTC
1 TATCTCTCC
806242 TATCTCTCC
1 TATCTCTCC
806251 T
1 T
806252 CCTATCATCC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 24 0.71
10 2 0.06
11 1 0.03
12 7 0.21
ACGTcount: A:0.12, C:0.39, G:0.02, T:0.47
Consensus pattern (9 bp):
TATCTCTCC
Found at i:806229 original size:21 final size:18
Alignment explanation
Indices: 806203--806281 Score: 67
Period size: 21 Copynumber: 4.4 Consensus size: 18
806193 CTCTCTCTAT
806203 TATCTCTCCTATCTCTCCTC
1 TATCTCTCCTATCTCT--TC
*
806223 GTATCTCTACTATCTCTTC
1 -TATCTCTCCTATCTCTTC
806242 TATCTCTCC--TC-CTATC
1 TATCTCTCCTATCTCT-TC
*
806258 -ATCCCTCCTATCTCTTC
1 TATCTCTCCTATCTCTTC
*
806275 TTTCTCT
1 TATCTCT
806282 TTGAGGGCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
15 9 0.19
16 4 0.08
17 4 0.08
18 14 0.29
19 2 0.04
21 15 0.31
ACGTcount: A:0.11, C:0.41, G:0.01, T:0.47
Consensus pattern (18 bp):
TATCTCTCCTATCTCTTC
Found at i:806256 original size:12 final size:12
Alignment explanation
Indices: 806208--806272 Score: 54
Period size: 12 Copynumber: 5.9 Consensus size: 12
806198 TCTATTATCT
806208 CTCCTATCTCTC
1 CTCCTATCTCTC
*
806220 CTCGTA--TCT-
1 CTCCTATCTCTC
*
806229 CTACTATCTCT-
1 CTCCTATCTCTC
806240 -T-CTATCTCTC
1 CTCCTATCTCTC
806250 CTCCTATCATC-C
1 CTCCTATC-TCTC
806262 CTCCTATCTCT
1 CTCCTATCTCT
806273 TCTTTCTCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
9 12 0.28
10 4 0.09
11 6 0.14
12 19 0.44
13 2 0.05
ACGTcount: A:0.12, C:0.43, G:0.02, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:806269 original size:33 final size:30
Alignment explanation
Indices: 806191--806281 Score: 101
Period size: 30 Copynumber: 2.9 Consensus size: 30
806181 CCTGTATCCT
* * *
806191 TCCTCTCTCTATTATCTCTCCTATCTCTCC
1 TCCTATCTCTACTATCTCTTCTATCTCTCC
*
806221 TCGTATCTCTACTATCTCTTCTATCTCTCC
1 TCCTATCTCTACTATCTCTTCTATCTCTCC
* *
806251 TCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TCCTATC-T--CTACTATCTCTTCTATCTCT
806282 TTGAGGGCTA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
30 32 0.63
31 1 0.02
33 18 0.35
ACGTcount: A:0.11, C:0.41, G:0.01, T:0.47
Consensus pattern (30 bp):
TCCTATCTCTACTATCTCTTCTATCTCTCC
Found at i:807575 original size:61 final size:61
Alignment explanation
Indices: 807480--807604 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
807470 TCAATGTCTG
*
807480 CCCCCTCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAA
1 CCCCCCCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAA
*
807541 CCCCCCCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAATCCATAGTTAACACAAA
1 CCCCCCCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAA
807602 CCC
1 CCC
807605 TAAGGGGCTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.34, C:0.32, G:0.09, T:0.26
Consensus pattern (61 bp):
CCCCCCCCAAATCTGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAA
Found at i:813879 original size:42 final size:42
Alignment explanation
Indices: 813823--813932 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
813813 TTCTTCTCTC
* * *
813823 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTAGTATCTCTCCTATCT
*
813865 CTCCTCCTATCATCCCTCCTATCTCTAGTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTAGTATCTCTCCTATCT
813907 CTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
813933 TCTTTCTCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.10, C:0.46, G:0.03, T:0.41
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTAGTATCTCTCCTATCT
Found at i:813882 original size:12 final size:11
Alignment explanation
Indices: 813856--813931 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
813846 TCTATTATCT
*
813856 CTCCTGTCTCTC
1 CTCCTATCTC-C
813868 CTCCTATCATCC
1 CTCCTATC-TCC
813880 CTCCTATCT--
1 CTCCTATCTCC
**
813889 CTAGTATCT--
1 CTCCTATCTCC
813898 CTCCTATCTCTC
1 CTCCTATCTC-C
813910 CTCCTATCATCC
1 CTCCTATC-TCC
*
813922 CTCCTCTCTC
1 CTCCTATCTC
813932 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 14 0.26
11 3 0.06
12 32 0.60
13 4 0.08
ACGTcount: A:0.11, C:0.47, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:815945 original size:42 final size:42
Alignment explanation
Indices: 815890--816008 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
815880 TTCTTCTCTC
* *
815890 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
815932 CTTCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
815974 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
816009 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:815950 original size:24 final size:24
Alignment explanation
Indices: 815909--816002 Score: 83
Period size: 24 Copynumber: 4.1 Consensus size: 24
815899 TCATCCCTCC
* *
815909 TCTCTCTATTATCTCTCCTGTCTCT
1 TCTC-CTATCATCCCTCCTGTCTCT
*
815934 TCTCCTATCATCCCTCC--TATC-
1 TCTCCTATCATCCCTCCTGTCTCT
*
815955 TCTACTATC-T--CTCCTGTCTCT
1 TCTCCTATCATCCCTCCTGTCTCT
* *
815976 CCTCCTATCATCCCTCCTCTCTCT
1 TCTCCTATCATCCCTCCTGTCTCT
816000 TCT
1 TCT
816003 TTCTCTTTGA
Statistics
Matches: 54, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
18 4 0.07
20 4 0.07
21 15 0.28
22 4 0.07
24 23 0.43
25 4 0.07
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.45
Consensus pattern (24 bp):
TCTCCTATCATCCCTCCTGTCTCT
Found at i:815974 original size:18 final size:18
Alignment explanation
Indices: 815905--815975 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
815895 CCTGTCATCC
* *
815905 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
815923 CTCCTGTCTCTTCTCCTATCAT
1 CTCCTG--TC-TCTACTATC-T
*
815945 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
815965 CTCCTGTCTCT
1 CTCCTGTCTCT
815976 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 3 0.07
21 15 0.37
22 3 0.07
24 5 0.12
ACGTcount: A:0.10, C:0.42, G:0.03, T:0.45
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:819833 original size:158 final size:155
Alignment explanation
Indices: 819610--820056 Score: 422
Period size: 158 Copynumber: 2.8 Consensus size: 155
819600 GTATTTAATG
* * * *
819610 TTCGTATCTCAAATGAGACAAACATAGATTC-CCATAATAATCTCCATTCTATTCACGACTG-GG
1 TTCGTACCTCAAATGAGACAAACATGGATTCTCC-TAATAATCTCCATTCTTTTCATGA-TGAGG
819673 CACAATAAATACTTTCTCCCTATTAGATACATGATATTGATGCTTTGATTTAGCAAGAAAAGCTT
64 CACAATAAATACTTTCTCCCTATTAGATACATGATA-TGATGCTTTGATTT-GCAAGAAAA-CTT
819738 TTGTTTCC-TCCATTTGCCTTAGAATCAAAA
126 TTGTTTCCAT-CATTTGCCTTAGAATCAAAA
* * * *
819768 TTTGTCCCTCAAATGAGACAAACATGGATTCTCCTAATAATCTCCATTATTTTTATG-TAGAGGC
1 TTCGTACCTCAAATGAGACAAACATGGATTCTCCTAATAATCTCCATTCTTTTCATGAT-GAGGC
* ** * * * **
819832 ACCATAAGCACATTT-T-GCTCATTAGGGTACATAATAATGATATTTTGACTTTG-AGAGAAAAC
65 ACAATAAATAC-TTTCTCCCT-ATTA-GATACATGAT-ATGATGCTTTGA-TTTGCA-AGAAAAC
* * * *
819894 CTTTGTTTCCATCATTTTCCTTAGTATCAAAG
124 TTTTGTTTCCATCATTTGCCTTAGAATCAAAA
* * * * *
819926 TTCGTATCTCAACTCAGACAAACATGGATTCTCATAATAATCTCCATTCTTTTCATGATTAGGCA
1 TTCGTACCTCAAATGAGACAAACATGGATTCTCCTAATAATCTCCATTCTTTTCATGATGAGGCA
* * * * *
819991 TAATAAATACTTTCTCCCCATTGGGATACATGATGATAAAGCTTTGATTTTGCAAGAAAAACTTT
66 CAATAAATACTTTCTCCCTATT-AGATACATGAT-ATGATGCTTTGA-TTTGCAAG-AAAACTTT
820056 T
127 T
820057 CTGAAGTGTT
Statistics
Matches: 228, Mismatches: 45, Indels: 31
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.00
157 6 0.03
158 176 0.77
159 41 0.18
160 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (155 bp):
TTCGTACCTCAAATGAGACAAACATGGATTCTCCTAATAATCTCCATTCTTTTCATGATGAGGCA
CAATAAATACTTTCTCCCTATTAGATACATGATATGATGCTTTGATTTGCAAGAAAACTTTTGTT
TCCATCATTTGCCTTAGAATCAAAA
Found at i:820410 original size:159 final size:157
Alignment explanation
Indices: 820116--820411 Score: 371
Period size: 158 Copynumber: 1.9 Consensus size: 157
820106 ACACTTTGAC
* * *
820116 TTTGCAAGAAAAGCTTTTTTTCCACCATTTTCCTTGGTATCAAAGTTCATAACTCAAACAAGACA
1 TTTGCAAGAAAAGCTTTTTTTCCACCATTTTCCTTAGAATCAAAATTCATAACTCAAACAAGACA
* *
820181 AACATGGATTCTCATATAATCTCCATTCTTTTCATGATTAGGCACAATAAATACTTTCTCCCCAT
66 AACATGGATTCTCATATAATCTCCATTCTTTTCATGATGAGGCACAATAAACACTTTCTCCCCAT
820246 TGGGATATATGATGTTGATGCTTTGGT
131 TGGGATATATGATGTTGATGCTTTGGT
* * * ** *
820273 TTTGCAAGAAAAGCTTTTCTTTCCTCCATTTTCTTTAGAATTAAAATTCATCCCTCAAATAAGAC
1 TTTGCAAGAAAAGCTTTT-TTTCCACCATTTTCCTTAGAATCAAAATTCATAACTCAAACAAGAC
* * ** * * *
820338 ACACGTGGATTCTTGTTATAATCTCCATTGTTTTCATGATG-GAGCACCATAAGCA-TGTTCTCC
65 AAACATGGATTC-TCATATAATCTCCATTCTTTTCATGATGAG-GCACAATAAACACT-TTCTCC
*
820401 TCATTGGGATA
127 CCATTGGGATA
820412 CATTTGCAAG
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
157 18 0.16
158 49 0.42
159 49 0.42
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (157 bp):
TTTGCAAGAAAAGCTTTTTTTCCACCATTTTCCTTAGAATCAAAATTCATAACTCAAACAAGACA
AACATGGATTCTCATATAATCTCCATTCTTTTCATGATGAGGCACAATAAACACTTTCTCCCCAT
TGGGATATATGATGTTGATGCTTTGGT
Found at i:820539 original size:140 final size:140
Alignment explanation
Indices: 820273--820544 Score: 293
Period size: 140 Copynumber: 1.9 Consensus size: 140
820263 ATGCTTTGGT
* * * *
820273 TTTGCAAGAAAAGCTTTTCTTTCCTCCATTTTCTTTAGAATTAAAATTCATCCCTCAAATAAGAC
1 TTTGCAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAAAATTAATCCCTCAAATAAGAC
* *** * * * * * * **
820338 ACACGTGGATTCTTGTTATAATCTCCATTGTTTTCATGATGGAGCACCATAAGCATGTTCTCCTC
66 ACACATGGATTCCCATAATAATCACCATTGCTTTCATGATGGAGCAACAAAAGAACATTCTCC-C
820403 ATTGGGATACA
130 ATTGGGATACA
* *
820414 TTTGCAAGAAAAGCTTTT-TTTCCACCATTTTCCTTAGAATCAAAGTTAATCCCTCAAATGAGAT
1 TTTGCAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAAAATTAATCCCTCAAATAAGA-
*
820478 GA-ACATGGATTCCCATAATAATCACCACTT-CTTT-AGTGATTGG-GCAACAAAAGAACATTCT
65 CACACATGGATTCCCATAATAATCACCA-TTGCTTTCA-TGA-TGGAGCAACAAAAGAACATTCT
820539 CCCATT
127 CCCATT
820545 AGGACACACA
Statistics
Matches: 108, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
139 5 0.05
140 79 0.73
141 24 0.22
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (140 bp):
TTTGCAAGAAAAGCTTTTCTTTCCACCATTTTCCTTAGAATCAAAATTAATCCCTCAAATAAGAC
ACACATGGATTCCCATAATAATCACCATTGCTTTCATGATGGAGCAACAAAAGAACATTCTCCCA
TTGGGATACA
Found at i:822412 original size:20 final size:20
Alignment explanation
Indices: 822367--822418 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
822357 GTAGCCAAAC
**
822367 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
822387 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
822406 TTGTATCGATACA
1 TTGTATCGATACA
822419 TTGGCTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:826651 original size:20 final size:21
Alignment explanation
Indices: 826626--826669 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
826616 AGTTTGTATA
826626 AACTTT-GTATTAAAGGGAAG
1 AACTTTCGTATTAAAGGGAAG
* *
826646 AACTTTCGTATTAAGGGGGAG
1 AACTTTCGTATTAAAGGGAAG
826667 AAC
1 AAC
826670 CTGCATAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.27
Consensus pattern (21 bp):
AACTTTCGTATTAAAGGGAAG
Found at i:829494 original size:17 final size:17
Alignment explanation
Indices: 829453--829487 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
829443 ACAATGGTAC
*
829453 TAAAAGCTTAGCACCTA
1 TAAAAGCTTAGCACCCA
829470 TAAAAGCTTAGCACCCA
1 TAAAAGCTTAGCACCCA
829487 T
1 T
829488 GGAAGCTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (17 bp):
TAAAAGCTTAGCACCCA
Found at i:831944 original size:21 final size:21
Alignment explanation
Indices: 831920--831963 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
831910 TTATCTCGTT
*
831920 TTCTCTCACTCTTCC-ATCTTC
1 TTCTCTC-CTCTTCCTATCATC
831941 TTCTCTCCTCTTCCTATCATC
1 TTCTCTCCTCTTCCTATCATC
831962 TT
1 TT
831964 TCCTCTCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.09, C:0.41, G:0.00, T:0.50
Consensus pattern (21 bp):
TTCTCTCCTCTTCCTATCATC
Found at i:834328 original size:9 final size:9
Alignment explanation
Indices: 834314--834374 Score: 59
Period size: 9 Copynumber: 6.1 Consensus size: 9
834304 GGATGACATG
834314 AGGAGAGAT
1 AGGAGAGAT
834323 AGGAGAGAT
1 AGGAGAGAT
*
834332 AGTAGAGAT
1 AGGAGAGAT
834341 AGGAGGGATGAT
1 AGGA--GA-GAT
834353 AGGAGGAGATAT
1 AGGA-GAG--AT
834365 AGGAGAGAT
1 AGGAGAGAT
834374 A
1 A
834375 ATAGAGAGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
9 23 0.51
10 1 0.02
11 8 0.18
12 13 0.29
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.15
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:834343 original size:42 final size:42
Alignment explanation
Indices: 834284--834405 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 42
834274 TAGCCCTCAA
* * *
834284 AGAGAAAGAAGAGATAGGAGGGATGACATGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
* *
834326 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGATATAGG
1 AGAGATAGTAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
* * *
834368 AGAGATAATAGAGAGATGAGGGATGACAGGCA-GAGAGA
1 AGAGATAGTAGAGATAGGAGGGATGACAGG-AGGAGAGA
834406 AGAAGATGGA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 68 0.99
43 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.42, T:0.12
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
Found at i:834355 original size:12 final size:13
Alignment explanation
Indices: 834338--834386 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 13
834328 AGATAGTAGA
834338 GATAGGAGG-GAT
1 GATAGGAGGAGAT
834350 GATAGGAGGAGAT
1 GATAGGAGGAGAT
834363 -ATAGGA-GAGAT
1 GATAGGAGGAGAT
*
834374 AATA-GA-GAGAT
1 GATAGGAGGAGAT
834385 GA
1 GA
834387 GGGATGACAG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
11 13 0.38
12 18 0.53
13 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.41, T:0.16
Consensus pattern (13 bp):
GATAGGAGGAGAT
Found at i:840213 original size:12 final size:12
Alignment explanation
Indices: 840196--840256 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 12
840186 AAGAGAAAAA
840196 AGAGATAGGAGG
1 AGAGATAGGAGG
840208 AGAGATAGGAGAGACAG
1 AGAGATA-G-GAG---G
840225 TAGAGATAGGAGG
1 -AGAGATAGGAGG
840238 -GATGATAGGAGG
1 AGA-GATAGGAGG
840250 AGAGATA
1 AGAGATA
840257 ATAGAGAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
11 2 0.05
12 20 0.49
13 4 0.10
14 3 0.07
16 3 0.07
17 2 0.05
18 7 0.17
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:840221 original size:30 final size:30
Alignment explanation
Indices: 840187--840281 Score: 93
Period size: 30 Copynumber: 3.1 Consensus size: 30
840177 TAGCCCTCAA
840187 AGAGAAAAAAGAGATAGGAGGAGA-GATAGG
1 AGAGAAAAAAGAGATAGGAGG-GATGATAGG
* **
840217 AGAGACAGTAGAGATAGGAGGGATGATAGG
1 AGAGAAAAAAGAGATAGGAGGGATGATAGG
* * *
840247 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
1 A-GAGA-A-AAAAGAGATAGGAGGGATGATAGG
840280 AG
1 AG
840282 GAGGAGAGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
29 2 0.04
30 25 0.46
31 4 0.07
32 1 0.02
33 22 0.41
ACGTcount: A:0.45, C:0.02, G:0.43, T:0.09
Consensus pattern (30 bp):
AGAGAAAAAAGAGATAGGAGGGATGATAGG
Found at i:840262 original size:33 final size:33
Alignment explanation
Indices: 840214--840284 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
840204 GAGGAGAGAT
* * *
840214 AGGAGAGACAGTAGAGATAGGAGGGATGATAGG
1 AGGAGAGACAATAGAGAGAGGAGGGATGACAGG
*
840247 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
1 AGGAGAGACAATAGAGAGAGGAGGGATGACAGG
840280 AGGAG
1 AGGAG
840285 GAGAGAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.46, T:0.10
Consensus pattern (33 bp):
AGGAGAGACAATAGAGAGAGGAGGGATGACAGG
Found at i:848750 original size:316 final size:316
Alignment explanation
Indices: 847912--849558 Score: 822
Period size: 316 Copynumber: 5.2 Consensus size: 316
847902 TACTTTCTTT
* * * * * * ** * *
847912 TCATTGGGATACATGATATTGATGCTTTGGTTTTGCAAAAAATAGCTTTTCTTTTTACTATTTTC
1 TCATTGGGATACATGATAGTAATACTTTGATTTTGCAAGAAA-AGCCTTTC-TTCCACCACTTTC
* * * * * * * * *
847977 CCTAGAATCAAAATTTGTCCTTGAAATGAGACATACATGAAT-TCTCATAATAATCTCCATTCTC
64 CATACAATCAAAGTTTATCCCTCAAATAAGACAAACATGAATCT-TCATAATAATCTCCATTCTT
* * *** * * * * * * * * *
848041 TTCATGACTCAACATAATAAACACATGCTTCTCATTGGGATGCATGATATTA-ATGCTTTTGTTT
128 TTCATAATTGGGCACAATAAAAATATTCTCCTCTTTGGGATACACGATA-TAGATGCTTTAGTTT
* * * * ** *
848105 CCCACGAAAAGCTTTTCTTTCTGCCATATTCCTTAGAATCAAAGTTCATCCCTCAACGAAGACAA
192 ACAAAGAAAAGCTTTTCTATCCACCATATTCCTTAGAATCAAAGTTCATCCCTCAAAGAAGACAA
* *
848170 ACATGGATTTGCATAATAATATCCATTCTTTTCATGATTGGCAACAAAAACATGCTTTCT
257 ACATGGATTTGCATAATAATATCCATTCTTTTCATAATTGGCAACAAAAACATGCTTTCC
* * * * * *
848230 TCATTGGGATACATGATATTGATATTTTTATTTTGCAAGAAAAGCTTTTCTTCCACCACTTTCCT
1 TCATTGGGATACATGATAGTAATACTTTGATTTTGCAAGAAAAGCCTTTCTTCCACCACTTTCCA
* *
848295 TACAATCAAAGTTTATCCCTCAAATGAGACAAACATGAATTTTCATAATAATCTCCATTCTTTTC
66 TACAATCAAAGTTTATCCCTCAAATAAGACAAACATGAATCTTCATAATAATCTCCATTCTTTTC
* * * * * *
848360 ATGATTGGGCTCAATAAACATGTTCTCCTCTTTGGGATGCATGATATAGATGCTTTAGTTTACAA
131 ATAATTGGGCACAATAAAAATATTCTCCTCTTTGGGATACACGATATAGATGCTTTAGTTTACAA
** * * * *
848425 AGAAAAGCTTTTCTATCCACCATATTTTTTGGAATCAAAGTTCATCTCTTAAAGGAGACAAACAT
196 AGAAAAGCTTTTCTATCCACCATATTCCTTAGAATCAAAGTTCATCCCTCAAAGAAGACAAACAT
*
848490 GGATTCT-CATAATAATATCCATTCTTTTCATAATTGGGCAACAAAAGCATG-TTCTCC
261 GGATT-TGCATAATAATATCCATTCTTTTCATAATT-GGCAACAAAAACATGCTT-TCC
* * *
848547 TCATTGGGATACATGATAGTAATGCTTTGATTTTGCAAGAAAAGCCTTTCTTTCCTCTA-TTCTC
1 TCATTGGGATACATGATAGTAATACTTTGATTTTGCAAGAAAAGCCTTTC-TTCCACCACTT-TC
* * * * *
848611 CATACATTCAAAGTTTGTCCCTCAAATAAGACAAA-ATGGATCTT-A-AATGATC-CCTTTTCTT
64 CATACAATCAAAGTTTATCCCTCAAATAAGACAAACATGAATCTTCATAATAATCTCC-ATTCTT
* * * * * *
848672 TTCATAATTGGGCACCATAAAAATATTCTTCT-TGTTTGGATACACGATGTTGATGCTTTTGATT
128 TTCATAATTGGGCACAATAAAAATATTCTCCTCT-TTGGGATACACGATATAGATGCTTTAG-TT
*** * * * * * *
848736 TTGTAAGCAAAGCTTTTCCT-TCCA--TTACTCCTTAAAATCAAAGTTCAACCCTC-AAGTGAGA
191 TACAAAGAAAAGCTTTT-CTATCCACCATATTCCTTAGAATCAAAGTTCATCCCTCAAAG-AAGA
* * * * * ** * * ** *
848797 TAAACATGGATTCTG-GTAATGATCTCTATTCTTTTTGTGATTGGTAGGAAAAACATG-TTCTCT
254 CAAACATGGATT-TGCATAATAATATCCATTCTTTTCATAATTGGCAACAAAAACATGCTT-TCC
* ** * * * * * * * * *
848860 TCATTGGGATTCACAATATTGATGCCTTGGTTTCGCAAGAAAAGCTTTTCTTTTCACTA-TTTCC
1 TCATTGGGATACATGATAGTAATACTTTGATTTTGCAAGAAAAGCCTTTC-TTCCACCACTTTCC
* * * * * * *
848924 TTAAAATCAAATTTTATCCCTTAAATGAGACAAACATGGATGCTT-ATAATAATCTCCATTTTTT
65 ATACAATCAAAGTTTATCCCTCAAATAAGACAAACATGAAT-CTTCATAATAATCTCCATTCTTT
** * * * * * * ** * ** *
848988 TTGTGATTAGGTAGCCA-AAACACATTCTTGTCATTAGGG-TACATAATATTGATGCTTT-GTCT
129 TCATAATTGGGCA-CAATAAAAATATTCTCCTC-TTTGGGATACACGATATAGATGCTTTAG--T
* * *** * * * *
849050 TTGC-AAGAAAAGCTTTTCTTTCTGGCATTTTCCTTAGAATAAAAGTCCATCCCTTAAATG-AGA
190 TTACAAAGAAAAGCTTTTCTATCCACCATATTCCTTAGAATCAAAGTTCATCCCTCAAA-GAAGA
* ** * * * * *
849113 TAAACATGGA-TT-CTAGTAATAATCCCCACTCTTTACATGATTGGGCACCATGAACACAT--TT
254 CAAACATGGATTTGC-A-TAATAATATCCATTCTTTTCATAATT-GGCAACA--AAAACATGCTT
849174 TCC
314 TCC
* * ** * * * ** * ** *
849177 ACAATGGGATACACAATATTGAA-GCTTT-AGTTTTGAAAGAAAAGTTTTTCTCTCTATGATTTT
1 TCATTGGGATACATGATAGT-AATACTTTGA-TTTTGCAAGAAAAGCCTTTCT-TCCACCACTTT
* * * * * *
849240 CCTTAAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAAT-TCTCATAACAATCTTCATTCT
63 CCATACAATCAAAGTTTATCCCTCAAATAAGACAAACATGAATCT-TCATAATAATCTCCATTCT
** * * * * * * *
849304 TTTTGTGATTGGG-A-AACAAAAATAGATTCTCCTCATT-AGATACATGATATTGATGCTTTGAT
127 TTTCATAATTGGGCACAATAAAAAT--ATTCTCCTCTTTGGGATACACGATATAGATGCTTT-AG
* * ** * *
849366 TTTGC-AAGAAAAGATTTTCCT-TTTACCATTTTCCTTTA-AATCAAAGTTCAT-CCTTATAATG
189 TTTACAAAGAAAAGCTTTT-CTATCCACCATATTCC-TTAGAATCAAAGTTCATCCCTCA-AA-G
* * * * * *
849427 -AGGCAAACATGGATTCT-CATAGTAATCTCCA-TCATTTTCATGATTGGGCCACAAGAACA-GT
250 AAGACAAACATGGATT-TGCATAATAATATCCATTC-TTTTCATAATT-GGCAACAAAAACATG-
* **
849488 TTTTTG
311 CTTTCC
* * * * * *
849494 TCATTGGGATACAAGATATTGATACTTTTG-TTTTGAAAGAAAAGCTTTTCTTTCCACCATTTTC
1 TCATTGGGATACATGATAGTAATAC-TTTGATTTTGCAAGAAAAGCCTTTC-TTCCACCACTTTC
849558 C
64 C
849559 TCAGAATCAA
Statistics
Matches: 1055, Mismatches: 217, Indels: 115
0.76 0.16 0.08
Matches are distributed among these distances:
312 30 0.03
313 77 0.07
314 80 0.08
315 115 0.11
316 298 0.28
317 280 0.27
318 167 0.16
319 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (316 bp):
TCATTGGGATACATGATAGTAATACTTTGATTTTGCAAGAAAAGCCTTTCTTCCACCACTTTCCA
TACAATCAAAGTTTATCCCTCAAATAAGACAAACATGAATCTTCATAATAATCTCCATTCTTTTC
ATAATTGGGCACAATAAAAATATTCTCCTCTTTGGGATACACGATATAGATGCTTTAGTTTACAA
AGAAAAGCTTTTCTATCCACCATATTCCTTAGAATCAAAGTTCATCCCTCAAAGAAGACAAACAT
GGATTTGCATAATAATATCCATTCTTTTCATAATTGGCAACAAAAACATGCTTTCC
Found at i:849471 original size:317 final size:318
Alignment explanation
Indices: 847916--849544 Score: 845
Period size: 317 Copynumber: 5.1 Consensus size: 318
847906 TTCTTTTCAT
* * * * * *
847916 TGGGATACATGATATTGATGCTTTGGTTTTGCAAA-AAATAGCTTTTCTTTTTACT-ATTTTCCC
1 TGGGATACAAGATATTGATACTTTAGTTTTG-AAAGAAA-AGCTTTTCTCTCTA-TGATTTTCCT
* * * * * * * * *
847979 TAGAATCAAAATTTGTCCTTGAAATGAGACATACATGAATTCTCATAATAATCTCCATTCTCTTC
63 TAAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATGCTCATAACAATCTCCATTCTTTTT
* * * * * * * * * * *
848044 ATGACTCA--ACATAATAAACACATGCTTCTCATTGGGATGCATGATATTAATGCTTTTGT-TTC
128 GTGA-TTAGGAAACAA-AAACACATTCTCCTCATTAGGATACATAATATTGATGC-TTTGTCTTT
* * * * * * * * *
848106 CCACGAAAAGCTTTTCTTTCTGCCATATTCCTTAGAATCAAAGTTCATCCC-TCAACGAAGACAA
190 GCAAGAAAAGATTTTCTTTCTACCATTTTCCTTAGAATAAAAGTCCATCCCTTAAATG-AGACAA
** * * * *
848170 ACATGGATT-T-GCATAATAATATCCATTCTTTTCATGATT-GGCAACAA-AA-ACATGCTTTCT
254 ACATGGATTCTAG--TAATAATCCCCACTCTTTACATGATTGGGCCACAAGAACACAT--TTTCC
* *
848230 TCAT
315 ACAA
* * * * ** *
848234 TGGGATACATGATATTGATATTTTTA-TTTTGCAAGAAAAGCTTTTCT-TCCACCACTTTCCTTA
1 TGGGATACAAGATATTGATA-CTTTAGTTTTGAAAGAAAAGCTTTTCTCTCTATGATTTTCCTTA
* * ** * **
848297 CAATCAAAGTTTATCCCTCAAATGAGACAAACATGAATTTTCATAATAATCTCCATTCTTTTCAT
65 AAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATGCTCATAACAATCTCCATTCTTTTTGT
*** ** * * * * * *
848362 GATT-GGGCTCAATAAACATGTTCTCCTCTTTGGGATGCATGATATAGATGCTTTAG--TTTACA
130 GATTAGGAAACAA-AAACACATTCTCCTCATTAGGATACATAATATTGATGCTTT-GTCTTTGC-
* * * * * * * * *
848424 AAGAAAAGCTTTTCTATCCACCATATTT-TTTGGAATCAAAGTTCATCTCTTAAAGGAGACAAAC
192 AAGAAAAGATTTTCTTTCTACCAT-TTTCCTTAGAATAAAAGTCCATCCCTTAAATGAGACAAAC
** * * * * * *
848488 ATGGATTCTCA-TAATAATATCCATTCTTTTCATAATTGGGCAACAA-AA-GCATGTTCTCCTCA
256 ATGGATTCT-AGTAATAATCCCCACTCTTTACATGATTGGGCCACAAGAACACAT-TT-TCCACA
*
848550 T
318 A
* * * * * * * * * *
848551 TGGGATACATGATAGTAATGCTTT-GATTTTGCAAGAAAAGCCTTTCTTTCCTCT-ATTCTCCAT
1 TGGGATACAAGATATTGATACTTTAG-TTTTGAAAGAAAAGCTTTTCTCT-CTATGATTTTCCTT
* * * * * * * ** * *
848614 ACATTCAAAGTTTGTCCCTCAAATAAGACAAA-ATGGAT-CTTA-AATGATC-CCTTTTCTTTTC
64 AAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATGCTCATAACAATCTCC-ATTCTTTTT
* * * * * * * ** * ** *
848675 ATAATTGGGCACCATAAAA-ATATTCTTCTTGTTTGGATACACGATGTTGATGCTTTTGAT-TTT
128 GTGATTAGGAAACA-AAAACACATTCTCCTCATTAGGATACATAATATTGATGC-TTTG-TCTTT
* * * * * * * * * * * *
848738 GTAAGCAAAGCTTTTC---CTTCCATTACTCCTTAAAATCAAAGTTCAACCCTCAAGTGAGATAA
190 GCAAGAAAAGATTTTCTTTCTACCATT-TTCCTTAGAATAAAAGTCCATCCCTTAAATGAGACAA
* * * * * *** * * **
848800 ACATGGATTCTGGTAATGATCTCTATTCTTTTTGTGATT-GG-TAGGAA-AA-ACATGTTCTCTT
254 ACATGGATTCTAGTAATAATCCCCACTCTTTACATGATTGGGCCA-CAAGAACACAT-TT-TCCA
*
848861 CAT
316 CAA
* * * * * * *
848864 TGGGATTCACA-ATATTGATGCCTTGGTTTCGCAAGAAAAGCTTTTCT-T-T-TCACTATTTCCT
1 TGGGATACA-AGATATTGATACTTTAGTTTTGAAAGAAAAGCTTTTCTCTCTATGA-T-TTTCCT
* * * * * *
848925 TAAAATCAAATTTTATCCCTTAAATGAGACAAACATGGATGCTTATAATAATCTCCATTTTTTTT
63 TAAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATGCTCATAACAATCTCCATTCTTTTT
* * * ** *
848990 GTGATTAGGTAGCCAAAACACATTCTTGTCATTAGGGTACATAATATTGATGCTTTGTCTTTGCA
128 GTGATTAGGAAACAAAAACACATTCTCCTCATTAGGATACATAATATTGATGCTTTGTCTTTGCA
* ** *
849055 AGAAAAGCTTTTCTTTCTGGCATTTTCCTTAGAATAAAAGTCCATCCCTTAAATGAGATAAACAT
193 AGAAAAGATTTTCTTTCTACCATTTTCCTTAGAATAAAAGTCCATCCCTTAAATGAGACAAACAT
*
849120 GGATTCTAGTAATAATCCCCACTCTTTACATGATTGGG-CACCATGAACACATTTTCCACAA
258 GGATTCTAGTAATAATCCCCACTCTTTACATGATTGGGCCA-CAAGAACACATTTTCCACAA
*
849181 TGGGATACACA-ATATTGA-AGCTTTAGTTTTGAAAGAAAAGTTTTTCTCTCTATGATTTTCCTT
1 TGGGATACA-AGATATTGATA-CTTTAGTTTTGAAAGAAAAGCTTTTCTCTCTATGATTTTCCTT
* *
849244 AAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATTCTCATAACAATCTTCATTCTTTTTG
64 AAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATGCTCATAACAATCTCCATTCTTTTTG
* * * *
849309 TGATTGGGAAACAAAAATAGATTCTCCTCATTA-GATACATGATATTGATGCTTTGAT-TTTGCA
129 TGATTAGGAAACAAAAACACATTCTCCTCATTAGGATACATAATATTGATGCTTTG-TCTTTGCA
* * *
849372 AGAAAAGATTTTCCTTT-TACCATTTTCCTTTA-AATCAAAGTTCAT-CCTTATAATGAGGCAAA
193 AGAAAAGATTTT-CTTTCTACCATTTTCC-TTAGAATAAAAGTCCATCCCTTA-AATGAGACAAA
* * * ** ***
849434 CATGGATTCTCA-TAGTAATCTCCA-TCATTTTCATGATTGGGCCACAAGAACAGTTTTTTGTCA
255 CATGGATTCT-AGTAATAATCCCCACTC-TTTACATGATTGGGCCACAAGAACACATTTTCCACA
*
849497 T
318 A
*
849498 TGGGATACAAGATATTGATACTTTTGTTTTGAAAGAAAAGCTTTTCT
1 TGGGATACAAGATATTGATACTTTAGTTTTGAAAGAAAAGCTTTTCT
849545 TTCCACCATT
Statistics
Matches: 1046, Mismatches: 207, Indels: 117
0.76 0.15 0.09
Matches are distributed among these distances:
309 1 0.00
310 2 0.00
311 1 0.00
312 34 0.03
313 69 0.07
314 88 0.08
315 97 0.09
316 284 0.27
317 289 0.28
318 169 0.16
319 10 0.01
320 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (318 bp):
TGGGATACAAGATATTGATACTTTAGTTTTGAAAGAAAAGCTTTTCTCTCTATGATTTTCCTTAA
AATCAAAGTTTATCCCTGAAATGAGACAAACATGAATGCTCATAACAATCTCCATTCTTTTTGTG
ATTAGGAAACAAAAACACATTCTCCTCATTAGGATACATAATATTGATGCTTTGTCTTTGCAAGA
AAAGATTTTCTTTCTACCATTTTCCTTAGAATAAAAGTCCATCCCTTAAATGAGACAAACATGGA
TTCTAGTAATAATCCCCACTCTTTACATGATTGGGCCACAAGAACACATTTTCCACAA
Found at i:849472 original size:158 final size:159
Alignment explanation
Indices: 847912--849626 Score: 1209
Period size: 159 Copynumber: 10.8 Consensus size: 159
847902 TACTTTCTTT
* * *
847912 TCATTGGGATACATGATATTGATGCTTTGGTTTTGCAAAAAATAGCTTTTCTTTTTACTATTTTC
1 TCATTGGGATACATGATATTGATGCTTTGATTTTGCAAGAAA-AGCTTTTC-TTTTACCATTTTC
* * ** * *
847977 C-CTAGAATCAAAATTTGT-CCTTGAAATGAGACATACATGAATTCTCATAATAATCTCCATTCT
64 CTTTAGAATCAAAGTTCATCCCTT-AAATGAGACAAACATGGATTCTCATAATAATCTCCATTCT
* * * * *
848040 CTTCATGACT---CAACATAATAAACACATGCTTC
128 TTTCATGATTGGGCAAC--AA-AAACAGATTCTCC
* * ** * * *
848072 TCATTGGGATGCATGATATTAATGCTTTTG-TTTCCCACGAAAAGCTTTTCTTTCTGCCATATTC
1 TCATTGGGATACATGATATTGATGC-TTTGATTTTGCAAGAAAAGCTTTTCTTT-TACCATTTTC
* * *
848136 C-TTAGAATCAAAGTTCATCCC-TCAACGAAGACAAACATGGATT-TGCATAATAATATCCATTC
64 CTTTAGAATCAAAGTTCATCCCTTAAATG-AGACAAACATGGATTCT-CATAATAATCTCCATTC
* *
848198 TTTTCATGATT-GGCAACAAAAACATGCTT-TCT
127 TTTTCATGATTGGGCAACAAAAACA-GATTCTCC
** * ** *
848230 TCATTGGGATACATGATATTGATATTTTTATTTTGCAAGAAAAGCTTTTCTTCCACCACTTTCC-
1 TCATTGGGATACATGATATTGATGCTTTGATTTTGCAAGAAAAGCTTTTCTTTTACCATTTTCCT
* * * * *
848294 TTACAATCAAAGTTTATCCCTCAAATGAGACAAACATGAATTTTCATAATAATCTCCATTCTTTT
66 TTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTCTTTT
*
848359 CATGATTGGGC-TCAATAAACATG-TTCTCC
131 CATGATTGGGCAACAA-AAACA-GATTCTCC
* * * * * **
848388 TCTTTGGGATGCATGATATAGATGCTTT-AGTTTACAAAGAAAAGCTTTTCTATCCACCATATTT
1 TCATTGGGATACATGATATTGATGCTTTGATTTTGC-AAGAAAAGCTTTTCT-TTTACCAT-TTT
* * * *
848452 --TTTGGAATCAAAGTTCATCTCTTAAAGGAGACAAACATGGATTCTCATAATAATATCCATTCT
63 CCTTTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTCT
* *
848515 TTTCATAATTGGGCAACAAAAGCATG-TTCTCC
128 TTTCATGATTGGGCAACAAAAACA-GATTCTCC
* * * * *
848547 TCATTGGGATACATGATAGTAATGCTTTGATTTTGCAAGAAAAGCCTTTCTTTCCT-CTATTCTC
1 TCATTGGGATACATGATATTGATGCTTTGATTTTGCAAGAAAAGCTTTTCTTT--TACCATTTTC
* * * ** * * * * *
848611 C-ATACATTCAAAGTTTGTCCCTCAAATAAGACAAA-ATGGA-TCTTA-AATGATC-CCTTTTCT
64 CTTTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCC-ATTCT
* * * *
848671 TTTCATAATTGGGCACCATAAAA-ATATTCTTC
128 TTTCATGATTGGGCAACA-AAAACAGATTCTCC
** * * * * * * *
848703 TTGTTTGGATACACGATGTTGATGCTTTTGATTTTGTAAGCAAAGCTTTTC-CTT-CCATTACTC
1 TCATTGGGATACATGATATTGATGC-TTTGATTTTGCAAGAAAAGCTTTTCTTTTACCATT-TTC
* * * * * ** * *
848766 C-TTAAAATCAAAGTTCAACCCTCAAGTGAGATAAACATGGATTCTGGTAATGATCTCTATTCTT
64 CTTTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTCTT
** * ** *
848830 TTTGTGATT-GGTAGGAAAAACATG-TTCTCT
129 TTCATGATTGGGCAACAAAAACA-GATTCTCC
* ** * * * *
848860 TCATTGGGATTCACAATATTGATGCCTTGGTTTCGCAAGAAAAGCTTTTCTTTTCACTA-TTTCC
1 TCATTGGGATACATGATATTGATGCTTTGATTTTGCAAGAAAAGCTTTTCTTTT-ACCATTTTCC
* * * * * *
848924 -TTAAAATCAAATTTTATCCCTTAAATGAGACAAACATGGATGCTTATAATAATCTCCATTTTTT
65 TTTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTCTTT
** * * * * * **
848988 TTGTGATTAGGTAGCCAAAACACATTCTTG
130 TCATGATTGGGCAACAAAAACAGATTCTCC
* **
849018 TCATTAGGG-TACATAATATTGATGCTTTG-TCTTTGCAAGAAAAGCTTTTCTTTCTGGCATTTT
1 TCATT-GGGATACATGATATTGATGCTTTGAT-TTTGCAAGAAAAGCTTTTCTTT-TACCATTTT
* * * * *
849081 CC-TTAGAATAAAAGTCCATCCCTTAAATGAGATAAACATGGATTCT-AGTAATAATCCCCACTC
63 CCTTTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCA-TAATAATCTCCATTC
* * ** * *
849144 TTTACATGATTGGGCACCATGAACACATTTTCC
127 TTTTCATGATTGGGCAACAAAAACAGATTCTCC
* * ** * * * * **
849177 ACAATGGGATACACAATATTGAAGCTTT-AGTTTTGAAAGAAAAGTTTTTCTCTCTATGATTTTC
1 TCATTGGGATACATGATATTGATGCTTTGA-TTTTGCAAGAAAAGCTTTTCT-TTTACCATTTTC
* * * * * *
849241 C-TTAAAATCAAAGTTTATCCCTGAAATGAGACAAACATGAATTCTCATAACAATCTTCATTCTT
64 CTTTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTCTT
** * *
849305 TTTGTGATTGGGAAACAAAAATAGATTCTCC
129 TTCATGATTGGGCAACAAAAACAGATTCTCC
* *
849336 TCATT-AGATACATGATATTGATGCTTTGATTTTGCAAGAAAAGATTTTCCTTTTACCATTTTCC
1 TCATTGGGATACATGATATTGATGCTTTGATTTTGCAAGAAAAGCTTTT-CTTTTACCATTTTCC
* *
849400 TTTA-AATCAAAGTTCAT-CCTTATAATGAGGCAAACATGGATTCTCATAGTAATCTCCA-TCAT
65 TTTAGAATCAAAGTTCATCCCTTA-AATGAGACAAACATGGATTCTCATAATAATCTCCATTC-T
* * * * **
849462 TTTCATGATTGGGCCACAAGAACAGTTTTTTG
128 TTTCATGATTGGGCAACAAAAACAGATTCTCC
* * * *
849494 TCATTGGGATACAAGATATTGATACTTTTG-TTTTGAAAGAAAAGCTTTTCTTTCCACCATTTTC
1 TCATTGGGATACATGATATTGATGC-TTTGATTTTGCAAGAAAAGCTTTTCTTT-TACCATTTTC
* * * * * ** *
849558 C-TCAGAATCAATGTTCATGCACC--AAATGAGACAAGCCTAGATTCTGGTAATAATCTCCAATC
64 CTTTAGAATCAAAGTTCAT-C-CCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTC
*
849620 CTTTCAT
127 TTTTCAT
849627 ATCAAAGTCT
Statistics
Matches: 1226, Mismatches: 266, Indels: 127
0.76 0.16 0.08
Matches are distributed among these distances:
154 5 0.00
155 31 0.03
156 80 0.07
157 211 0.17
158 318 0.26
159 517 0.42
160 54 0.04
161 8 0.01
162 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (159 bp):
TCATTGGGATACATGATATTGATGCTTTGATTTTGCAAGAAAAGCTTTTCTTTTACCATTTTCCT
TTAGAATCAAAGTTCATCCCTTAAATGAGACAAACATGGATTCTCATAATAATCTCCATTCTTTT
CATGATTGGGCAACAAAAACAGATTCTCC
Found at i:850816 original size:158 final size:158
Alignment explanation
Indices: 850532--850821 Score: 336
Period size: 158 Copynumber: 1.8 Consensus size: 158
850522 CGAAAAAGGA
* * * * * *
850532 TTTTCATTCTACCATATTCCATAAAATCAAATTTCATCCCTCAATGGAGACAAACATGGATTCTT
1 TTTTCATTCCACCATATTCCATAAAATCAAAGTTCATCCCTCAATGAAGAAAAACATAGATTCTC
* * * *
850597 ATAATAATATCCATTCTTCTCATATTATGTAAGAAAAACACACTTTCTTCATTAGGATACATGAT
66 ATAATAATATCCATTCTTCTCATATTAGGCAACAAAAACACACTTTCTCCATTAGGATACATGAT
850662 ATTGATGCTTTGGTTTCACAATAGAAGC
131 ATTGATGCTTTGGTTTCACAATAGAAGC
* * * **
850690 TTTTCTTTCCACCATTTTCTATAAAATCAAAGTTCATTTCTCAAAT-AAGAAAAACATAGATTCT
1 TTTTCATTCCACCATATTCCATAAAATCAAAGTTCATCCCTC-AATGAAGAAAAACATAGATTCT
* * * * *
850754 CATAATAATCTCCATTC-TCTTCTTGATTAGGCACCAAAAACACA--TTCTCCCATTTGGTTACA
65 CATAATAATATCCATTCTTC-TCAT-ATTAGGCAACAAAAACACACTTTCT-CCATTAGGATACA
850816 TGATAT
127 TGATAT
850822 AGATTTCCCA
Statistics
Matches: 108, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.06
158 84 0.78
159 18 0.17
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (158 bp):
TTTTCATTCCACCATATTCCATAAAATCAAAGTTCATCCCTCAATGAAGAAAAACATAGATTCTC
ATAATAATATCCATTCTTCTCATATTAGGCAACAAAAACACACTTTCTCCATTAGGATACATGAT
ATTGATGCTTTGGTTTCACAATAGAAGC
Found at i:851256 original size:32 final size:33
Alignment explanation
Indices: 851217--851281 Score: 98
Period size: 35 Copynumber: 2.0 Consensus size: 33
851207 CCTTACAACA
851217 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCT
851249 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
851282 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (33 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCT
Found at i:852503 original size:21 final size:21
Alignment explanation
Indices: 852460--852505 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
852450 TAATTCACGC
* *
852460 ATTCTCCCCCGTTTATTAATA
1 ATTCTCCCCCGTTAATCAATA
852481 ATTCTCCCCC-TTAATCAAGTA
1 ATTCTCCCCCGTTAATCAA-TA
852502 ATTC
1 ATTC
852506 ATATCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (21 bp):
ATTCTCCCCCGTTAATCAATA
Found at i:856539 original size:34 final size:35
Alignment explanation
Indices: 856501--856567 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
856491 CCTTACAACA
856501 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
856535 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
856568 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:857044 original size:13 final size:13
Alignment explanation
Indices: 857026--857051 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
857016 CAATTTTTTG
857026 TGTATCGATACAT
1 TGTATCGATACAT
857039 TGTATCGATACAT
1 TGTATCGATACAT
857052 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:857063 original size:32 final size:33
Alignment explanation
Indices: 857006--857069 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
856996 TACAAGCCAA
**
857006 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
857039 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
857070 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:858811 original size:153 final size:155
Alignment explanation
Indices: 858405--858817 Score: 415
Period size: 160 Copynumber: 2.6 Consensus size: 155
858395 ATTGGGAAAT
* * *
858405 ATGATATTGTTACTTTGGTTTTGCAAG-AAAAGCTTTTC--TCCACCCTTTTCCTTAGAATCAAA
1 ATGATATTGATACTTTGATTTTGCAAGAAAAAG-TTTTCTTTTCA-CCTTTTCCTTAGAATCAAA
* * * * * *
858467 GTTCTTCCCCAAAGTGAAACAAACATGGATTCTCATAATAATCCCCATTCTTTTCACGATTGGAC
64 GTTCATCCTCAAA-TGAGACAAACATGGATTCTCGTAATAAT-CCAATTCTTTTCACGATTGCAC
** *
858532 AACACAAACATGTTCTTCTCATTAGGATAC
127 AACACAAACAAATTCTCCTCATTA-GATAC
* * * * * * *
858562 ATAATATGGATACATTGGTTTTTGCAAGAAAAGGTTTTCTTTTCACCGTTTACCTTAGAATCAAT
1 ATGATATTGATAC-TTTGATTTTGCAAGAAAAAGTTTTCTTTTCACC-TTTTCCTTAGAATCAAA
* * * * **
858627 GTTTATCCCTCGAATGAGACAAACTTGGATTCTGGTAATAAT-CAATTCTTTT-GTGATTGCACA
64 GTTCAT-CCTCAAATGAGACAAACATGGATTCTCGTAATAATCCAATTCTTTTCACGATTGCACA
* * *
858690 CCATAAACAAATTCTCCTTATTA-ATAC
128 ACACAAACAAATTCTCCTCATTAGATAC
* * *
858717 ATGATATTGATGCTTTGATTTCGCAAGAAAAAGTTTTCTTTTCACCTTTTCCATAGAATCAAAGT
1 ATGATATTGATACTTTGATTTTGCAAGAAAAAGTTTTCTTTTCACCTTTTCCTTAGAATCAAAGT
*
858782 TCATCCATCAAATGAGACAAACATGGATTCTTGTAA
66 TCATCC-TCAAATGAGACAAACATGGATTCTCGTAA
858818 GTGTCGTAAC
Statistics
Matches: 208, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
152 2 0.01
153 45 0.22
154 29 0.14
155 14 0.07
157 35 0.17
158 26 0.12
159 6 0.03
160 46 0.22
161 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (155 bp):
ATGATATTGATACTTTGATTTTGCAAGAAAAAGTTTTCTTTTCACCTTTTCCTTAGAATCAAAGT
TCATCCTCAAATGAGACAAACATGGATTCTCGTAATAATCCAATTCTTTTCACGATTGCACAACA
CAAACAAATTCTCCTCATTAGATAC
Found at i:862020 original size:52 final size:52
Alignment explanation
Indices: 861876--862004 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
861866 CGAAATATGA
* * *
861876 AAATTTGCCGGCATGTATCGATACATTTCATAGTGTATTGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
861928 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
861980 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
862005 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
Found at i:863883 original size:52 final size:51
Alignment explanation
Indices: 863734--863862 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 51
863724 CCCGAAATAT
*
863734 GAAAATTTGCCTGCATGTATCGATAATTTTATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATAATTTCATAGTGTATCGATACATCTGG
863785 GAAAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATA-ATTTCATAGTGTATCGATACATCTGG
* *
863837 GCAAATTTGCCTGCATGTATCAATAA
1 GAAAATTTGCCTGCATGTATCGATAA
863863 AAAGATCAGT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
51 26 0.35
52 48 0.65
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (51 bp):
GAAAATTTGCCTGCATGTATCGATAATTTCATAGTGTATCGATACATCTGG
Found at i:863962 original size:19 final size:19
Alignment explanation
Indices: 863938--864035 Score: 112
Period size: 19 Copynumber: 5.8 Consensus size: 19
863928 AGTAGCTTCA
863938 TATGTATCGATACAACACT
1 TATGTATCGATACAACACT
863957 TATGTATCGAT---ACA--
1 TATGTATCGATACAACACT
863971 T-TGTATCGATACAACACT
1 TATGTATCGATACAACACT
863989 TATGTATCGAT---ACA--
1 TATGTATCGATACAACACT
864003 T-TGTATCGATACAACACT
1 TATGTATCGATACAACACT
864021 TATGTATCGATACAA
1 TATGTATCGATACAA
864036 ATCGTTGACA
Statistics
Matches: 67, Mismatches: 0, Indels: 24
0.74 0.00 0.26
Matches are distributed among these distances:
13 18 0.27
14 2 0.03
16 12 0.18
18 2 0.03
19 33 0.49
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:863977 original size:13 final size:13
Alignment explanation
Indices: 863959--864015 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
863949 ACAACACTTA
863959 TGTATCGATACAT
1 TGTATCGATACAT
863972 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
863990 ATGTATCGATACAT
1 -TGTATCGATACAT
864004 TGTATCGATACA
1 TGTATCGATACA
864016 ACACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:863981 original size:32 final size:32
Alignment explanation
Indices: 863940--864034 Score: 190
Period size: 32 Copynumber: 3.0 Consensus size: 32
863930 TAGCTTCATA
863940 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
863972 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
864004 TGTATCGATACAACACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
864035 AATCGTTGAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:865067 original size:159 final size:156
Alignment explanation
Indices: 864844--865426 Score: 448
Period size: 159 Copynumber: 3.7 Consensus size: 156
864834 TCTTAATTAA
* * * ** *** * *
864844 GATACATGATATTGATGTTTTAGTTTCCCAAGAAAAGCTTTTCTTTTTGCCATATTCATCAGAAT
1 GATACATAATATTGATCTTTGA-TTTTGCAAGAAAAGCTTTTCTTTCCACCATATTCCTTAGAAT
* * *
864909 CAATGTTTATCCCTCAAAGGAGATAAACATGAATTGTCATAATAATATCCATTTTGTTCATTGTT
65 CAAAGTTTATCCCTCAAAGGAGACAAACATGAATTCTCATAATAATATCCATTTTG-TCATTGTT
* * *
864974 AGGCAACAAAAACATGTTCTCTTCATTGG
129 -GGCAACAAAAACATGTACACCTCATTGG
* * * *
865003 GATACATAATATTGGTACTTTGATTTGGCAAGAAAAGCATTTCTTTCCACCATTTTCCTTAGAAT
1 GATACATAATATTGAT-CTTTGATTTTGCAAGAAAAGCTTTTCTTTCCACCATATTCCTTAGAAT
* * * * * ** * * * * *
865068 AAAAAGTTCATCACTCAAATGAGACAAACATGGATTCTTGTAGA-AA-AGCAAGTCTGTGATTG-
65 -CAAAGTTTATCCCTCAAAGGAGACAAACATGAATTCTCATA-ATAATATCCATTTTGTCATTGT
* * * *
865130 -GGCATA-ATAAGCATGTCCACCTCATT-A
128 TGGCA-ACAAAAACATGTACACCTCATTGG
* * * *
865157 GATACATGACATATAGATGCTTTG-TTTTCCAAAGAAAAGCTTTTCTATCCACCAAAATT-CTTA
1 GATACAT-A-ATATTGAT-CTTTGATTTTGC-AAGAAAAGCTTTTCTTTCCACC-ATATTCCTTA
* *
865220 GAATCAAAATTTATCCCTCAAAGGAGACAAACATGAATTCTCCTAATAATATCCATTTTGTCA-T
61 GAATCAAAGTTTATCCCTCAAAGGAGACAAACATGAATTCTCATAATAATATCCATTTTGTCATT
* **
865284 GATTGGGTAACAAAAACACATACACCTCATTGG
126 G-TT-GGCAACAAAAACATGTACACCTCATTGG
* * * * * *
865317 GATACATGATATTCATCTTCGATTTTGCAAGAAAAGCTTTTCTTTCCATCATTTTCTTTAGAAGT
1 GATACATAATATTGATCTTTGATTTTGCAAGAAAAGCTTTTCTTTCCACCATATTCCTTAGAA-T
* * * * * *
865382 -AGAGCTTATCCCTTAAATGAGACAAACTTGGATTCTCATAATAAT
65 CAAAGTTTATCCCTCAAAGGAGACAAACATGAATTCTCATAATAAT
865427 TTCCTTTCTT
Statistics
Matches: 324, Mismatches: 81, Indels: 40
0.73 0.18 0.09
Matches are distributed among these distances:
154 8 0.02
155 61 0.19
156 51 0.16
157 70 0.22
158 18 0.06
159 71 0.22
160 44 0.14
161 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (156 bp):
GATACATAATATTGATCTTTGATTTTGCAAGAAAAGCTTTTCTTTCCACCATATTCCTTAGAATC
AAAGTTTATCCCTCAAAGGAGACAAACATGAATTCTCATAATAATATCCATTTTGTCATTGTTGG
CAACAAAAACATGTACACCTCATTGG
Found at i:867049 original size:91 final size:91
Alignment explanation
Indices: 866915--867084 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 91
866905 GTTTTTAGGC
* * * * *
866915 AAAAATCATGTTCTCCTTATTGGGATGCATAATATTGATGCTTTGGTTTCACAAGAAAAGCTTGT
1 AAAAATCACGTTCTCCTTATTAGGATACATAATATTGATGCTTTAGTTTCACAACAAAAGCTTGT
*
866980 CTTCCCATTATTATAGATTGGGCAAT
66 CTTCCCATCATTATAGATTGGGCAAT
* * *
867006 AAAAA-CACGTTCTTCTTATTAGGAGTACATAATTTTG-TAGCTTTAGTTTCACAACAATAGCTT
1 AAAAATCACGTTCTCCTTATTAGGA-TACATAATATTGAT-GCTTTAGTTTCACAACAAAAGCTT
* *
867069 TTCTTCCTATCATTAT
64 GTCTTCCCATCATTAT
867085 CTTTAAAATG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
90 17 0.26
91 49 0.74
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (91 bp):
AAAAATCACGTTCTCCTTATTAGGATACATAATATTGATGCTTTAGTTTCACAACAAAAGCTTGT
CTTCCCATCATTATAGATTGGGCAAT
Found at i:868774 original size:156 final size:153
Alignment explanation
Indices: 868448--868830 Score: 398
Period size: 156 Copynumber: 2.5 Consensus size: 153
868438 ATTGGATACG
* * *
868448 CGATATTAATGCTTTGTTTT-ATCAAGAAAAGCTTTTCTTTCCATCATTTTCTTTAGAGTCAAAG
1 CGATATT-ATGCTTTGTTTTCA-CAAGAAAAGCTTTTCTTCCCATCATTTTCCTTAGAATCAAAG
** ** * * *
868512 TTTGTCCCTCAAATAACAAACATGGATTCTCATAACAATCTCTATTATTTTTGTTATCGGGCAAT
64 --T-TCATTCAAATAACAAACATGGATTCTCATAACAATCTCTATTATTTTCATGATCAGGCAAG
* **
868577 AAAAACTCATTCTTTTTTTAGGGAAACA
126 AAAAACACATTCTTTTCATAGGGAAACA
* **
868605 CAATATTATTGCTTTGTTTTCACAAGAAAAATTTTTCTTCCCATCATTTTCCTTAGAATCAAAGT
1 CGATATTA-TGCTTTGTTTTCACAAGAAAAGCTTTTCTTCCCATCATTTTCCTTAGAATCAAAGT
* ** * *
868670 TCATTCAAATGAGACAAACATGGATTCTCATCATTATCTCTATTATTTTCATGATTAGGCAAGGA
65 TCATTCAAAT-A-ACAAACATGGATTCTCATAACAATCTCTATTATTTTCATGATCAGGCAAGAA
* *
868735 GAACACATTCTTTTCAT-GGTGATACA
128 AAACACATTCTTTTCATAGG-GAAACA
* *
868761 TGATATTGATGCTTTAG-TTTCA-AGAGAAAAGCTTTTCTTCCCATCACTTTCCTTAGAATCAAA
1 CGATATT-ATGCTTT-GTTTTCACA-AGAAAAGCTTTTCTTCCCATCATTTTCCTTAGAATCAAA
868824 GTT-ATTC
63 GTTCATTC
868831 CTTCAAGTTC
Statistics
Matches: 190, Mismatches: 28, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
154 8 0.04
155 9 0.05
156 116 0.61
157 56 0.29
158 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (153 bp):
CGATATTATGCTTTGTTTTCACAAGAAAAGCTTTTCTTCCCATCATTTTCCTTAGAATCAAAGTT
CATTCAAATAACAAACATGGATTCTCATAACAATCTCTATTATTTTCATGATCAGGCAAGAAAAA
CACATTCTTTTCATAGGGAAACA
Done.