Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1822
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1013428
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
File 6 of 7
Found at i:870676 original size:153 final size:157
Alignment explanation
Indices: 870383--870676 Score: 409
Period size: 153 Copynumber: 1.9 Consensus size: 157
870373 CAAACTTCAT
*
870383 CCTTCAAAAGAGATGAACATGGATTCTTTTAATAATCTCCATTGTTTTTGTGATTGGGCAACAAA
1 CCTTCAAAAGAGACGAACATGGATTCTTTTAATAATCTCCATTGTTTTTGTGATTGGGCAACAAA
* * ** *
870448 AACATGCTCTTTTTATTAAAGGTACACAATATTGATGCTTCGGTTTCACAAGAAAAACTTTTCTT
66 AACATGCTCTCTTCATTAAAGAAACACAATATTGATGCTTCGGTTTCACAAGAAAAACTTTTCAT
* *
870513 TCCATTATTTTTGTTAGAAAATTCTTC
131 CCCATCATTTTTGTTAGAAAATTCTTC
870540 CCTT-AAAAGAGACGAACATGGATTC-TTTAATAATCTCCATTGTTTTTGTGATT-GGCAACAAA
1 CCTTCAAAAGAGACGAACATGGATTCTTTTAATAATCTCCATTGTTTTTGTGATTGGGCAACAAA
* ** * * * *
870602 AACATGTTCTCTTCATT-TTGAAACACGATATTGATGCTTTGGTTTCACTAGCAAAGA-TTTTCA
66 AACATGCTCTCTTCATTAAAGAAACACAATATTGATGCTTCGGTTTCACAAG-AAAAACTTTTCA
870665 TCCCATCATTTT
130 TCCCATCATTTT
870677 CCATAGAATG
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
153 42 0.35
154 27 0.22
155 28 0.23
156 20 0.17
157 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (157 bp):
CCTTCAAAAGAGACGAACATGGATTCTTTTAATAATCTCCATTGTTTTTGTGATTGGGCAACAAA
AACATGCTCTCTTCATTAAAGAAACACAATATTGATGCTTCGGTTTCACAAGAAAAACTTTTCAT
CCCATCATTTTTGTTAGAAAATTCTTC
Found at i:872538 original size:19 final size:20
Alignment explanation
Indices: 872508--872558 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
872498 ACATTATGCT
* **
872508 TTGTATCAATACATGCTC-A
1 TTGTATCGATACACACTCAA
*
872527 TTGTATTGATACACACTCAA
1 TTGTATCGATACACACTCAA
872547 TTGTATCGATAC
1 TTGTATCGATAC
872559 CTGAAATTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACACACTCAA
Found at i:873629 original size:154 final size:154
Alignment explanation
Indices: 873371--873703 Score: 388
Period size: 154 Copynumber: 2.2 Consensus size: 154
873361 TAGAGCTTAC
**
873371 AAATTCAATTTATTTTATGAGTTTTACAAATTTTCCTATTACTGAGATACGAAGCTTTCTATTTC
1 AAATTCAATTTATTTTATGAGTTTTACAAATTTTCCTATTACCAAGATACGAAGCTTTCTATTTC
* **
873436 ATAAATTTCTCTGGTGGGATTTTTCTAAGTTTATAATTTTCAAAATT-ATTCAAATATTATTGCT
66 ATAAATTTCTCTGGTGGGATTTTTCTAAGTTTAAAATTTTCAAAATTCA-TCAAATATTATTAAT
*
873500 TAATTCATATTAAATCAGTTT-AGA
130 AAATTCATATTAAATCAGTTTGAGA
* * * * * * * *
873524 AAATTTTAATTTATTTTATGAGTTTTAGAATTTTTCTTGTTTCCAAGATACGAAGTTTTTTACTT
1 AAA-TTCAATTTATTTTATGAGTTTTACAAATTTTCCTATTACCAAGATACGAAGCTTTCTA-TT
* * * * *
873589 T-GTAAATTT-TTTCGGTTGGATTTTTCTTAA-TTTAAAATTTTTAAAATTCATCAAATATTTTT
64 TCATAAATTTCTCT-GGTGGGATTTTTC-TAAGTTTAAAATTTTCAAAATTCATCAAATATTATT
** *
873651 AATAAATTTGTATTAAATCAGTTTGTGA
127 AATAAATTCATATTAAATCAGTTTGAGA
873679 AAATTCAATTTATTTTATGAGTTTT
1 AAATTCAATTTATTTTATGAGTTTT
873704 GCCTTTTTTT
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
153 5 0.03
154 134 0.89
155 12 0.08
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (154 bp):
AAATTCAATTTATTTTATGAGTTTTACAAATTTTCCTATTACCAAGATACGAAGCTTTCTATTTC
ATAAATTTCTCTGGTGGGATTTTTCTAAGTTTAAAATTTTCAAAATTCATCAAATATTATTAATA
AATTCATATTAAATCAGTTTGAGA
Found at i:875449 original size:166 final size:163
Alignment explanation
Indices: 874998--875465 Score: 458
Period size: 164 Copynumber: 2.8 Consensus size: 163
874988 AGGGCAAGTT
* ** * * * * * *
874998 TATAAATATTGAAAAATTTTATT-CATAAGCCAAAGGTAGTAGGCCGAATCTTTCTTGTAATTTT
1 TATAAATATT-AAAAATTTTATTCCA-AGGCCAAAAATACTTGACCAAACCTTTCTTGTAA-TCT
* * * * * * * *
875062 TGGATTTGACTTTTGTGTTGATTTTGATATGTTCGATATTTAATTTTGTGCTTTATTTAAAT-AG
63 TAGATGTGATTTTTGCGTTGATTTTGATATGTTTGATATTTAATTTTGTGTTTTAATTATATAAG
* * *
875126 GAACCAGTTTGTAATTTTAGAAAGTTTAGAGATTAAG
128 G-ACCAATTTGTAATTTCAGAAAGTTTAGAGATTAAA
* * * * *
875163 TGTAAATATTAAAAATTTTATTCCAAGGCCAAAAATACTTGACTAAGCCTTTTTTGTAATTTTTA
1 TATAAATATTAAAAATTTTATTCCAAGGCCAAAAATACTTGACCAAACCTTTCTTGTAA-TCTTA
* * * * *
875228 GATTTGATTTTTGTGTGGATCTTGATATGTTTGATATTTTATTTTGTGTTTTAATTATATAAGGA
65 GATGTGATTTTTGCGTTGATTTTGATATGTTTGATATTTAATTTTGTGTTTTAATTATATAAGGA
*
875293 CCAATTTGTAATTTCAGAAAGTTTAGGGATTTAAA
130 CCAATTTGTAATTTCAGAAAGTTTAGAGA-TTAAA
** * * *
875328 TATAAATATTAGAAAATTTT-TTCCAAGGCCAAAGTTACTTGGCCAAATCTTTCTTGTGA-CTTA
1 TATAAATATTA-AAAATTTTATTCCAAGGCCAAAAATACTTGACCAAACCTTTCTTGTAATCTTA
* * * *
875391 CGTATGTGATTTTTGGCGTTGATTTTAATATATTTGATACTTAATTTTGTGTTTTAATTATGTAA
65 -G-ATGTGATTTTT-GCGTTGATTTTGATATGTTTGATATTTAATTTTGTGTTTTAATTATATAA
875456 GGACCAATTT
127 GGACCAATTT
875466 ACAAATTCAA
Statistics
Matches: 252, Mismatches: 44, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
163 3 0.01
164 120 0.48
165 69 0.27
166 60 0.24
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (163 bp):
TATAAATATTAAAAATTTTATTCCAAGGCCAAAAATACTTGACCAAACCTTTCTTGTAATCTTAG
ATGTGATTTTTGCGTTGATTTTGATATGTTTGATATTTAATTTTGTGTTTTAATTATATAAGGAC
CAATTTGTAATTTCAGAAAGTTTAGAGATTAAA
Found at i:876172 original size:156 final size:155
Alignment explanation
Indices: 875876--876669 Score: 784
Period size: 156 Copynumber: 5.1 Consensus size: 155
875866 GATAAAAGAC
** * * * * *
875876 ATCATTTTTGTGTCTTTTAGGGTTATTGGGATACTTTCATGTTGAGGGTATACCCATA-AGAGTA
1 ATCATTTTTAAGTCTTTTAAGGTTATTGAGATACTTTCATGTTGAAGGTATA-CCTTAGAG-GCA
* * ** * ** **
875940 -TTTTAGTAATTTTCCCTAGAACTGAGTCTTAGATTGTCACCGGGATGCTTTTATGCCAAATATG
64 TTTTTA-TAATTTT--TTAAAACCAAGTCTTAGGTTGTCACTAGGATGCTTTTATGCCAAAGGTG
*
876004 TGTATTTAGGATAGGTTCATCTCATTTATG
126 TGCATTTAGGATAGGTTCATCTCATTTATG
* * * * * *
876034 ATAATTTTTGAGTCTTTTAAGGTTATTAAGATACTTCCACGTTGAAGGCATACCTTAGAGGCATT
1 ATCATTTTTAAGTCTTTTAAGGTTATTGAGATACTTTCATGTTGAAGGTATACCTTAGAGGCATT
* *
876099 TTTATAATTTTCTTAGAACCAAGTCTTACGTTGTCACTAGGATGCTTTTATGCTC-AAGGTGTGC
66 TTTATAATTTT-TTAAAACCAAGTCTTAGGTTGTCACTAGGATGCTTTTATGC-CAAAGGTGTGC
*
876163 ATTTAGGATAGGTTCATCTTATTTATG
129 ATTTAGGATAGGTTCATCTCATTTATG
* * *
876190 ATCATTTTTAAGTCTTTTAAGGATATTGGGATACTTTCATGTTGAAAGTATACCTTA-AGGGCAT
1 ATCATTTTTAAGTCTTTTAAGGTTATTGAGATACTTTCATGTTGAAGGTATACCTTAGA-GGCAT
* * * * *
876254 TTTTGTAATTTTTTTAAAAGCAAGTCCTAGGTTGCCACTAGGATGTTTTTATGCCAAAGGTGTGC
65 TTTTATAA-TTTTTTAAAACCAAGTCTTAGGTTGTCACTAGGATGCTTTTATGCCAAAGGTGTGC
876319 ATTT-GTGATAGGTTCATCTCATTTATG
129 ATTTAG-GATAGGTTCATCTCATTTATG
* * * * * * *
876346 ATAATTTTTAAGTCCTTTATGGTTATCGAGATACTGTCATGTTAAAGG--TA--TTAGAGGCATC
1 ATCATTTTTAAGTCTTTTAAGGTTATTGAGATACTTTCATGTTGAAGGTATACCTTAGAGGCATT
* * * * * *
876407 TTCATAATTTTTCCAAAACCGAGTCCTAAGTTGTCACTAGGATGCTTTTATGCTAAAGGTGTGCA
66 TTTATAATTTTT-TAAAACCAAGTCTTAGGTTGTCACTAGGATGCTTTTATGCCAAAGGTGTGCA
876472 TTTAGGATAGGTTCATCTCATTTATG
130 TTTAGGATAGGTTCATCTCATTTATG
* ** ** * * * *
876498 ATCA-TATTAAGTCCCTTAAGGTTATCAAGATATTTTCATGTCGAAGGTATACCTTAGGGGTATT
1 ATCATTTTTAAGTCTTTTAAGGTTATTGAGATACTTTCATGTTGAAGGTATACCTTAGAGGCATT
* * * * * * * * *
876562 TTTGTAATTTTTTAACAGCAAGTCTTAGGTTGCCACTGGGAAT-CTTTTACGCCAAATGTTTACA
66 TTTATAATTTTTTAAAACCAAGTCTTAGGTTGTCACTAGG-ATGCTTTTATGCCAAAGGTGTGCA
*
876626 GTTAGGATAGGTTCATC-CTATTTATG
130 TTTAGGATAGGTTCATCTC-ATTTATG
876652 ATCATTTTTAAGTTCTTT
1 ATCATTTTTAAG-TCTTT
876670 GGGGTTATCG
Statistics
Matches: 529, Mismatches: 89, Indels: 38
0.81 0.14 0.06
Matches are distributed among these distances:
151 40 0.08
152 85 0.16
153 5 0.01
154 65 0.12
155 29 0.05
156 237 0.45
157 18 0.03
158 50 0.09
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (155 bp):
ATCATTTTTAAGTCTTTTAAGGTTATTGAGATACTTTCATGTTGAAGGTATACCTTAGAGGCATT
TTTATAATTTTTTAAAACCAAGTCTTAGGTTGTCACTAGGATGCTTTTATGCCAAAGGTGTGCAT
TTAGGATAGGTTCATCTCATTTATG
Found at i:876468 original size:308 final size:309
Alignment explanation
Indices: 875876--876680 Score: 926
Period size: 312 Copynumber: 2.6 Consensus size: 309
875866 GATAAAAGAC
** * * * *
875876 ATCATTTTTGTGTCTTTTAGGGTTATTGGGATACTTTCATGTTGAGGGTATACCCATAAGAGTAT
1 ATCATTTTTAAGTCTTTTAAGGTTATTGGGATACTTTCATGTTGAAGGTATA-CCTTAAGGGTAT
* ** * * * * * *
875941 TTTAGTAATTTTCCCTAGAA-CTGAGTCTTAGATTGTCACCGGGATGCTTTTATGCCAAATATGT
65 TTTTGTAATTTT-TTTAAAAGC-AAGTCTTAGGTTGCCACTGGGATGCTTTTATGCCAAATGTGT
* * * **
876005 GTATTTAGGATAGGTTCATCTCATTTATGATAATTTTTGAGTCTTTTAAGGTTATTAAGATACTT
128 GCATTT-GGATAGGTTCATCTCATTTATGATAATTTTTAAGTCCTTTAAGGTTATCGAGATACTT
* * * * * * *
876070 CCACGTTGAAGGCATACCTTAGAGGCATTTTTATAATTTTCTTAGAACCAAGTCTTACGTTGTCA
192 CCACGTTAAAGG-ATA-CTTAGAGGCATCTTCATAATTTTCTCAAAACCAAGTCCTAAGTTGTCA
* *
876135 CTAGGATGCTTTTATGCTCAAGGTGTGCATTTAGGATAGGTTCATCTTATTTATG
255 CTAGGATGCTTTTATGCTAAAGGTGTGCATTTAGGATAGGTTCATCTCATTTATG
* * *
876190 ATCATTTTTAAGTCTTTTAAGGATATTGGGATACTTTCATGTTGAAAGTATACCTTAAGGGCATT
1 ATCATTTTTAAGTCTTTTAAGGTTATTGGGATACTTTCATGTTGAAGGTATACCTTAAGGGTATT
* * * *
876255 TTTGTAATTTTTTTAAAAGCAAGTCCTAGGTTGCCACTAGGATGTTTTTATGCCAAAGGTGTGCA
66 TTTGTAATTTTTTTAAAAGCAAGTCTTAGGTTGCCACTGGGATGCTTTTATGCCAAATGTGTGCA
*
876320 TTTGTGATAGGTTCATCTCATTTATGATAATTTTTAAGTCCTTTATGGTTATCGAGATACTGT-C
131 TTTG-GATAGGTTCATCTCATTTATGATAATTTTTAAGTCCTTTAAGGTTATCGAGATACT-TCC
* *
876384 ATGTTAAAGG-TA-TTAGAGGCATCTTCATAATTTT-TCCAAAACCGAGTCCTAAGTTGTCACTA
194 ACGTTAAAGGATACTTAGAGGCATCTTCATAATTTTCT-CAAAACCAAGTCCTAAGTTGTCACTA
876446 GGATGCTTTTATGCTAAAGGTGTGCATTTAGGATAGGTTCATCTCATTTATG
258 GGATGCTTTTATGCTAAAGGTGTGCATTTAGGATAGGTTCATCTCATTTATG
* ** *** * * *
876498 ATCA-TATTAAGTCCCTTAAGGTTATCAAGATATTTTCATGTCGAAGGTATACCTTAGGGGTATT
1 ATCATTTTTAAGTCTTTTAAGGTTATTGGGATACTTTCATGTTGAAGGTATACCTTAAGGGTATT
* * * *
876562 TTTGTAA-TTTTTTAACAGCAAGTCTTAGGTTGCCACTGGGAAT-CTTTTACGCCAAATGTTTAC
66 TTTGTAATTTTTTTAAAAGCAAGTCTTAGGTTGCCACTGGG-ATGCTTTTATGCCAAATGTGTGC
* * * **
876625 AGTTAGGATAGGTTCATC-CTATTTATGATCATTTTTAAGTTCTTTGGGGTTATCGA
130 A-TTTGGATAGGTTCATCTC-ATTTATGATAATTTTTAAGTCCTTTAAGGTTATCGA
876681 AATATTTTCA
Statistics
Matches: 420, Mismatches: 64, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
305 1 0.00
306 90 0.21
307 61 0.15
308 95 0.23
310 2 0.00
311 1 0.00
312 102 0.24
313 22 0.05
314 46 0.11
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.41
Consensus pattern (309 bp):
ATCATTTTTAAGTCTTTTAAGGTTATTGGGATACTTTCATGTTGAAGGTATACCTTAAGGGTATT
TTTGTAATTTTTTTAAAAGCAAGTCTTAGGTTGCCACTGGGATGCTTTTATGCCAAATGTGTGCA
TTTGGATAGGTTCATCTCATTTATGATAATTTTTAAGTCCTTTAAGGTTATCGAGATACTTCCAC
GTTAAAGGATACTTAGAGGCATCTTCATAATTTTCTCAAAACCAAGTCCTAAGTTGTCACTAGGA
TGCTTTTATGCTAAAGGTGTGCATTTAGGATAGGTTCATCTCATTTATG
Found at i:878066 original size:29 final size:29
Alignment explanation
Indices: 878000--878078 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
877990 AAAGTTAGGG
* * *
878000 AATTAAAATTCAACTAAAATACTAAAAGG
1 AATTAAAAGTCAACTAAAACACTAAAAGA
* *
878029 GATTGAAAGTCAACTAAAACACTAAAAGA
1 AATTAAAAGTCAACTAAAACACTAAAAGA
* *
878058 AATTAAAAGTTAGCTAAAACA
1 AATTAAAAGTCAACTAAAACA
878079 TTAGAACTTC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.57, C:0.11, G:0.10, T:0.22
Consensus pattern (29 bp):
AATTAAAAGTCAACTAAAACACTAAAAGA
Found at i:880469 original size:52 final size:52
Alignment explanation
Indices: 880413--880541 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
880403 CACTGATCTT
*
880413 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
880465 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
880517 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
880542 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:887384 original size:26 final size:25
Alignment explanation
Indices: 887351--887423 Score: 65
Period size: 26 Copynumber: 2.8 Consensus size: 25
887341 ATGCCGAAAC
** * *
887351 AGTCAAAAGTAAACACATAAACAAA
1 AGTCAAAAAAAAAAACAAAAACAAA
887376 AGTCAAAAAAAAAAAACAAAAACAAA
1 AGTC-AAAAAAAAAAACAAAAACAAA
** *
887402 ACACAAAAAAATAGAACAAAAA
1 AGTCAAAAAAA-AAAACAAAAA
887424 AGGTGTAAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
25 11 0.28
26 28 0.72
ACGTcount: A:0.74, C:0.14, G:0.05, T:0.07
Consensus pattern (25 bp):
AGTCAAAAAAAAAAACAAAAACAAA
Found at i:887395 original size:13 final size:13
Alignment explanation
Indices: 887379--887424 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
887369 AAACAAAAGT
887379 CAAAAAAAAAAAA
1 CAAAAAAAAAAAA
* *
887392 CAAAAACAAAACA
1 CAAAAAAAAAAAA
* *
887405 CAAAAAAATAGAA
1 CAAAAAAAAAAAA
887418 CAAAAAA
1 CAAAAAA
887425 GGTGTAAAGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:887690 original size:18 final size:18
Alignment explanation
Indices: 887663--887705 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
887653 TGTTCTTTTC
*
887663 CAAA-AAAAGAAAGAAAA
1 CAAACAAAAGAAAAAAAA
887680 CAAACAAAAGAAAAAAAA
1 CAAACAAAAGAAAAAAAA
*
887698 GAAACAAA
1 CAAACAAA
887706 CAAACAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.81, C:0.09, G:0.09, T:0.00
Consensus pattern (18 bp):
CAAACAAAAGAAAAAAAA
Found at i:887693 original size:26 final size:25
Alignment explanation
Indices: 887664--887727 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 25
887654 GTTCTTTTCC
887664 AAAAAAAGAAAGAAAACAAACAAAAGA
1 AAAAAAAGAAA-AAAACAAACAAAA-A
*
887691 AAAAAAAGAAACAAACAAACAAAAA
1 AAAAAAAGAAAAAAACAAACAAAAA
887716 AAAGAAGAAGAA
1 AAA-AA-AAGAA
887728 GAAGGGAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 4 0.12
26 14 0.41
27 16 0.47
ACGTcount: A:0.81, C:0.08, G:0.11, T:0.00
Consensus pattern (25 bp):
AAAAAAAGAAAAAAACAAACAAAAA
Found at i:888818 original size:34 final size:34
Alignment explanation
Indices: 888777--889325 Score: 537
Period size: 34 Copynumber: 16.9 Consensus size: 34
888767 TGTGGCACCA
888777 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* *
888811 TTCTAAGCCCACAACTTCGTGGCACTCTTTTTCC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* * * *
888845 TTCTAAGTCCACAACTCTGT-GC-CAC-----CC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
888872 TTTTAAGCCCACAACTCCGTGGCACTC-TTTTCC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* * *
888905 TTTTAAGTCCACAACTCTGTGGCA--C-----CA
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* * *
888932 TTTTAAACCCGCAACTCCATGGCACTCTTTTTCC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* *
888966 TTCTAAGCCCACAACTCCGTGGCAC-CTTTTTCT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
*
888999 TTTTAAAGCCTACAACTCCGTGGCA--C-----CC
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCC
889027 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* * * *
889061 TTCTAAGTCCACGACTCCGTGGCAC-CTTCTT--
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
**
889092 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* * * *
889126 TTCTAAGTCCACAACTCCATGGCAC-CTTTTTCT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
*
889159 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCCC
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTT-TCC
889195 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCC
* * *
889230 TTCTAAGTCCACAACTCCGTGGCAC-CTTTTTCT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
* * *
889263 TTTTAAAGTCCACAACTTCGTGGCAC-CTTGTTCC
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCC
* *
889297 TTTTAAGTCCACAACTCTGTGGCA-TCTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTT
889326 CACCCCCTCT
Statistics
Matches: 430, Mismatches: 56, Indels: 59
0.79 0.10 0.11
Matches are distributed among these distances:
27 58 0.13
28 7 0.02
29 4 0.01
31 23 0.05
32 7 0.02
33 83 0.19
34 205 0.48
35 10 0.02
36 33 0.08
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (34 bp):
TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
Found at i:888863 original size:95 final size:95
Alignment explanation
Indices: 888721--889325 Score: 480
Period size: 95 Copynumber: 6.3 Consensus size: 95
888711 CTTTTCTGCA
* * * * *
888721 AAGCCCACAACTACGTAGCACTC-TTTTCCTTTTAAGTCCACAACTCTGTGGCACCATTTTAAGC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTAAGC
*
888785 CCACAACTCCGTGGCACTCTTTTTCCTTCT
66 CCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * *
888815 AAGCCCACAACTTCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGCCACCCTTTTAAGC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTAAGC
888880 CCACAACTCCGTGGCACTC-TTTTCCTTTT
66 CCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * ** * *
888909 AAGTCCACAACTCTGTGGCAC-C---AT--TT-TAAACCCGCAACTCCATGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCAC-C---TT--T
*
888967 TCTAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
60 T-TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* * *
889003 AAAGCCTACAACTCCGTGGCA--C-----CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 -AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCAC-C---TT--
* * * **
889061 TTCTAAGTCCACGACTCCGTGGCAC-CTTCTT--TTCA
59 TT-TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
*
889096 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCATGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCA-C-----CTTT
*
889161 TTAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTT
60 TT-AAGCCCACAACTCCGTGGCACTCTTTT-TCCTTTT
889199 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCTT
1 -AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCA-C-----CTT
* * *
889264 TTTAAAGTCCACAACTTCGTGGCAC-CTTGTTCCTTTT
59 TTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* *
889301 AAGTCCACAACTCTGTGGCA-TCTTT
1 AAGCCCACAACTCCGTGGCACTCTTT
889326 CACCCCCTCT
Statistics
Matches: 434, Mismatches: 46, Indels: 56
0.81 0.09 0.10
Matches are distributed among these distances:
87 16 0.04
88 3 0.01
90 1 0.00
91 1 0.00
92 19 0.04
93 6 0.01
94 83 0.19
95 130 0.30
98 1 0.00
99 44 0.10
100 10 0.02
101 20 0.05
102 6 0.01
103 6 0.01
104 88 0.20
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (95 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTAAGC
CCACAACTCCGTGGCACTCTTTTTCCTTTT
Found at i:889014 original size:155 final size:155
Alignment explanation
Indices: 888721--889260 Score: 726
Period size: 155 Copynumber: 3.4 Consensus size: 155
888711 CTTTTCTGCA
* * * * *
888721 AAGCCCACAACTACGTAGCACTC-TTTTCCTTTTAAGTCCACAACTCTGTGGCACCATTTTAAGC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCATTTTAAAC
* * *
888785 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTTCGTGGCACTCTTTTTCCTTCT-
66 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
888849 AAGTCCACAACTCTGTGCCACCCTTTT
130 AAG-CCACAACTCCGTGCCACCCTTTT
* *
888876 AAGCCCACAACTCCGTGGCACTC-TTTTCCTTTTAAGTCCACAACTCTGTGGCACCATTTTAAAC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCATTTTAAAC
* *
888940 CCGCAACTCCATGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAA
66 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAA
*
889005 AGCCTACAACTCCGTGGCACCCTTTT
131 AGCC-ACAACTCCGTGCCACCCTTTT
* *
889031 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACC--ATTTT-A
* *
889096 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCATGGCACCTTTTTCTTT
63 AA-CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
889161 TTAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTT
127 TTAAAG-CCACAACTCCGT-G--C-C----ACCCTTTT
*
889199 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTT
1 -AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCATTTT
889261 CTTTTTAAAG
Statistics
Matches: 346, Mismatches: 22, Indels: 22
0.89 0.06 0.06
Matches are distributed among these distances:
154 12 0.03
155 154 0.45
156 29 0.08
158 4 0.01
159 3 0.01
160 74 0.21
161 3 0.01
164 1 0.00
167 4 0.01
168 7 0.02
169 55 0.16
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.32
Consensus pattern (155 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCATTTTAAAC
CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAA
AGCCACAACTCCGTGCCACCCTTTT
Found at i:889219 original size:104 final size:100
Alignment explanation
Indices: 888870--889325 Score: 464
Period size: 104 Copynumber: 4.6 Consensus size: 100
888860 TCTGTGCCAC
* * *
888870 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTT-AAGTCCACAACTCTGTGGCA-C---
1 CCTTCTAAGCCCACAACTCCGTGGCAC-CTTTTCCTTTTAAAGCCCACAACTCCGTGGCATCTTT
* * ** *
888930 --CATTTTAAACCCGCAACTCCATGGCACTCTTTTT
65 TTCCTTCTAAGTCCACAACTCCATGGCACTCTTTTT
* *
888964 CCTTCTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCTACAACTCCGTGGCA-C---
1 CCTTCTAAGCCCACAACTCCGTGGCACC-TTTTCCTTTTAAAGCCCACAACTCCGTGGCATCTTT
* * *
889025 --CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
65 TTCCTTCTAAGTCCACAACTCCATGGCACTCTTTTT
* *
889059 CCTTCTAAGTCCACGACTCCGTGGCACC--TT-CTTTTCAAAGCCCACAACTCCGTGGCACTCTT
1 CCTTCTAAGCCCACAACTCCGTGGCACCTTTTCCTTTT-AAAGCCCACAACTCCGTGGCA-TCTT
889121 TTTCCTTCTAAGTCCACAACTCCATGGCAC-CTTTTT
64 TTTCCTTCTAAGTCCACAACTCCATGGCACTCTTTTT
* *
889157 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGCCCACAACTCCGTGGCACT
1 CCTTCT-AAGCCCACAACTCCGTGGCAC-CTTTT--CCTTTTAAAGCCCACAACTCCGTGGCA-T
*
889222 CTTTTTCCTTCTAAGTCCACAACTCCGTGGCAC-CTTTTT
61 CTTTTTCCTTCTAAGTCCACAACTCCATGGCACTCTTTTT
* * * * * *
889261 CTTTTTAAAGTCCACAACTTCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCTGTGGCATCTT
1 CCTTCT-AAGCCCACAACTCCGTGGCACCTT-TTCCTTTTAAAGCCCACAACTCCGTGGCATCTT
889325 T
64 T
889326 CACCCCCTCT
Statistics
Matches: 319, Mismatches: 25, Indels: 30
0.85 0.07 0.08
Matches are distributed among these distances:
91 4 0.01
92 22 0.07
93 1 0.00
94 36 0.11
95 74 0.23
98 10 0.03
99 43 0.13
100 6 0.02
101 18 0.06
102 8 0.03
103 3 0.01
104 89 0.28
105 5 0.02
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (100 bp):
CCTTCTAAGCCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCACAACTCCGTGGCATCTTTT
TCCTTCTAAGTCCACAACTCCATGGCACTCTTTTT
Found at i:889410 original size:32 final size:31
Alignment explanation
Indices: 889333--889628 Score: 386
Period size: 32 Copynumber: 9.4 Consensus size: 31
889323 TTTCACCCCC
889333 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
*
889364 CTTTCAAAGCCCACACAAGTCGGTGGCAACCCCT
1 -TCT-AAAGCCCACACAAGTCGGTGGCAA-CCCT
* *
889398 TCTAAAGCCCACACAAGTTGGTGGCAACCTT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
889429 CTCTAAAGCCCACACAA--C-GTGGCAACCCT
1 -TCTAAAGCCCACACAAGTCGGTGGCAACCCT
* **
889458 TCTCAAAGCCCACAAAAGTCATTGGCAACCCT
1 TCT-AAAGCCCACACAAGTCGGTGGCAACCCT
889490 CTCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 -TCTAAAGCCCACACAAGTCGGTGGCAACCCT
*
889522 TCTTAAAGCCCACACAAGTCGATGGCAACCCT
1 TC-TAAAGCCCACACAAGTCGGTGGCAACCCT
*
889554 TCTTAAAGCCCACACAAGTTGGTGGC-ACCCATT
1 TC-TAAAGCCCACACAAGTCGGTGGCAACCC--T
889587 CTCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 -TCTAAAGCCCACACAAGTCGGTGGCAACCCT
889619 TCT-AAGCCCA
1 TCTAAAGCCCA
889629 ATATCGCTGG
Statistics
Matches: 236, Mismatches: 15, Indels: 28
0.85 0.05 0.10
Matches are distributed among these distances:
28 3 0.01
29 22 0.09
30 7 0.03
31 13 0.06
32 129 0.55
33 52 0.22
34 10 0.04
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.18
Consensus pattern (31 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCCT
Found at i:889561 original size:125 final size:127
Alignment explanation
Indices: 889332--889628 Score: 428
Period size: 125 Copynumber: 2.3 Consensus size: 127
889322 CTTTCACCCC
*
889332 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTTTCAAAGCCCACACAAGTCGGTGGCAACCCC
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCT-AAAGCCCACACAAGTCGGTGGCAACCCC
* *
889397 TTCTAAAGCCCACACAAGTTGGTGGCAACCTTCTCTAAAGCCCACACAA-CGTGGCAACCC-TT
65 TTCTAAAGCCCACACAAGTCGATGGCAACCTTCTCTAAAGCCCACACAATCGTGGC-ACCCATT
* **
889459 CTC-AAAGCCCACAAAAGTCATTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAA-CCCT
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAACCCCT
*
889522 TCTTAAAGCCCACACAAGTCGATGGCAACCCTTCT-TAAAGCCCACACAAGTTGGTGGCACCCAT
66 TC-TAAAGCCCACACAAGTCGATGGCAA-CCTTCTCTAAAGCCCACACAA--TCGTGGCACCCAT
889586 T
127 T
889587 CTCTAAAGCCCACACAAGTCGGTGGCAACCCT-TCT-AAGCCCA
1 CTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCA
889629 ATATCGCTGG
Statistics
Matches: 153, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
124 6 0.04
125 61 0.40
126 34 0.22
127 14 0.09
128 13 0.08
129 25 0.16
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.18
Consensus pattern (127 bp):
CTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAACCCCT
TCTAAAGCCCACACAAGTCGATGGCAACCTTCTCTAAAGCCCACACAATCGTGGCACCCATT
Found at i:889801 original size:95 final size:94
Alignment explanation
Indices: 889616--891026 Score: 1590
Period size: 95 Copynumber: 15.0 Consensus size: 94
889606 CGGTGGCAAC
* *
889616 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTT-ATCTTTAAGTCCAA
1 CCTTC-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAA
*
889679 TGTAGCTGGCCTTGAATCAGCACATTGGTA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
889709 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAA
*
889774 TGTAGCTGGCCTTGAATCAGCATATTGGCA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
*
889804 CCTTCAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTTTCCATCTTTAAGTCCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAA
889869 TGTAGCTGGCCTTGAATCAGCACATTGGCA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
889899 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAA
889964 TGTAGCTGGCCTTGAATCAGCACATTGGCA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
889994 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAA
*
890059 TGTAGCTAGCCTTGAATCAGCACATTGGCA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890089 CCTTCAAGTCCAATATAGCTGGCCTTAAATCAGCATATTAGCACCTTTTCCATCTTTAAGTCCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAA
890154 TGTAGCTGGCCTTGAATCAGCACATTGGCA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890184 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC--C-TTAGGTCCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCATCTTTAAGTCCAA
* * *
890246 TATTGCTGGCCTTGAATCAGCATATTGGCA
65 TGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890276 CCTTCTTCCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAGATTGGCACC---T--TC---AAG
1 -C--CTT-C--AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAG
* * * *
890333 TCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
60 TCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890368 CCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA------C--CTTTAAG
1 CC--T-TC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAG
* * *
890425 TCCAATATAGCAGGCCTTGAATCAGCATATTGGCA
60 TCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890460 CCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT--TC---
1 CC---T---TC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTT
* * *
890517 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
57 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890555 CCTTTTCCATCGTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T--TC---
1 CC---T---TC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTT
* *
890612 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
57 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890650 CCTTTTCCATATTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA------C--CTTT
1 CC--TT-C------AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTT
* *
890707 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
57 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
890745 CCTTCTTCCTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTCTTC--C-TTAA
1 -C--CTT-C--AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCATCTTTAA
890807 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
59 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * *
890843 CCTTCAAGTCTAATATCGCTGGCCTTGAATTAGCATATTGGCACC-TTT-ATCTTTAAGTCCAAT
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAAT
890906 GTAGCTGGCCTTGAATCAGCACATTGGCA
66 GTAGCTGGCCTTGAATCAGCACATTGGCA
* *
890935 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAA
*
891000 CGTAGCTGGCCTTGAATCAGCACATTG
65 TGTAGCTGGCCTTGAATCAGCACATTG
891027 AAATCCTTTT
Statistics
Matches: 1219, Mismatches: 48, Indels: 100
0.89 0.04 0.07
Matches are distributed among these distances:
89 2 0.00
90 2 0.00
91 6 0.00
92 342 0.28
93 16 0.01
94 6 0.00
95 756 0.62
96 8 0.01
97 1 0.00
98 78 0.06
99 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (94 bp):
CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAAT
GTAGCTGGCCTTGAATCAGCACATTGGCA
Found at i:889807 original size:21 final size:21
Alignment explanation
Indices: 889783--889850 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
889773 ATGTAGCTGG
889783 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* ** *
889804 CCTTCAAGTCCAATATAGCTGG--
1 CCTTGAA-T-CAGCATA-TTGGCA
*
889826 CCTTGAATTAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
889847 CCTT
1 CCTT
889851 TTCCATCTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 11 0.33
22 7 0.21
23 5 0.15
24 3 0.09
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:890346 original size:92 final size:91
Alignment explanation
Indices: 890240--890981 Score: 955
Period size: 92 Copynumber: 8.0 Consensus size: 91
890230 TCTTCCTTAG
*
890240 GTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCCTTAAGTCCAATGTAGCTGGC
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCCTTAAGTCCAATGTAGCTGGC
*
890305 CTTGAATCAGCAGATTGGCACCTTCAA
65 CTTGAATCAGCACATTGGCACCTTCAA
* * *
890332 GTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGC
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCCTTAAGTCCAATGTAGCTGGC
*
890397 CTTGAATCAGCACATTGGCACCTTTAA
65 CTTGAATCAGCACATTGGCACCTTCAA
*
890424 GTCCAATATAGCAGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCT
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-C--C-TTAAGTCCAATGTAGCT
*
890489 GGCCTTGAATCAGCACATTGGCACTTTCAA
62 GGCCTTGAATCAGCACATTGGCACCTTCAA
*
890519 GTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCGTTAAGTCCAATGTAGCT
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-C--C-TTAAGTCCAATGTAGCT
890584 GGCCTTGAATCAGCACATTGGCACCTTCAA
62 GGCCTTGAATCAGCACATTGGCACCTTCAA
890614 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATATTTAAGTCCAATGTAGCT
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCC----TTAAGTCCAATGTAGCT
*
890679 GGCCTTGAATCAGCACATTGGCACCTTTAA
62 GGCCTTGAATCAGCACATTGGCACCTTCAA
*
890709 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCCTTAAGTCCAATATAGCTGGC
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCCTTAAGTCCAATGTAGCTGGC
* *
890774 TTTGAATCAGCATATTGGCACCTTCTTCCTTAA
65 CTTGAATCAGCACATTGGCA-C--CTT-C--AA
* * * * *
890807 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-C--AAGTCTAATATCGCTGGCC
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCTTAAGTCCAATGTAGCTGGCC
* *
890867 TTGAATTAGCATATTGGCACCTTTATCTTTAA
66 TTGAATCAGCACATTGGCACC--T-TC---AA
* * *
890899 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T--TTAAGTCCAATATAGCTGGCC
1 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCTTAAGTCCAATGTAGCTGGCC
*
890959 TTGAATCAGCATATTGGCACCTT
66 TTGAATCAGCACATTGGCACCTT
890982 TTCCATCTTT
Statistics
Matches: 598, Mismatches: 31, Indels: 45
0.89 0.05 0.07
Matches are distributed among these distances:
89 2 0.00
90 1 0.00
91 6 0.01
92 276 0.46
93 1 0.00
94 2 0.00
95 268 0.45
96 4 0.01
98 38 0.06
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (91 bp):
GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCTTAAGTCCAATGTAGCTGGCC
TTGAATCAGCACATTGGCACCTTCAA
Found at i:890420 original size:21 final size:20
Alignment explanation
Indices: 890396--890463 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
890386 ATGTAGCTGG
890396 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCA-ATTGGCA
* *
890417 CCTTTAAGTC--CAATATAGCA
1 CCTTGAA-TCAGCAAT-TGGCA
890437 GGCCTTGAATCAGCATATTGGCA
1 --CCTTGAATCAGCA-ATTGGCA
890460 CCTT
1 CCTT
890464 TTCCATCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 12 0.33
22 8 0.22
23 6 0.17
24 2 0.06
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (20 bp):
CCTTGAATCAGCAATTGGCA
Found at i:890617 original size:518 final size:518
Alignment explanation
Indices: 889634--891026 Score: 2413
Period size: 518 Copynumber: 2.7 Consensus size: 518
889624 GCCCAATATC
* *
889634 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAG
* *
889699 CACATTGGTA-C--CTT-C--AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-T
60 CATATTGGCACCTTCTTCCTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT
* * *
889757 TCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCAAGTCCAATATAG
125 T-C--C-TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCG
889822 CTGGCCTTGAATTAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATC
186 CTGGCCTTGAATTAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGTAGCTGGCCTTGAATC
*
889887 AGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
248 AGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
*
889952 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGC
313 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAACTGGC
*
890017 CTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCAC
378 CTTGAATCAGCATATTGGCACCTTTTCCATCGTTAAGTCCAATGTAGCTAGCCTTGAATCAGCAC
*
890082 ATTGGCACCTTCAAGTCCAATATAGCTGGCCTTAAATCAGCATATTAGCACCTTTTCCATCTTTA
443 ATTGGCACCTTCAAGTCCAATATAGCTGGCCTTAAATCAGCATATTAGCACCTTTTCCATATTTA
890147 AGTCCAATGTA
508 AGTCCAATGTA
890158 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
* *
890223 GGCACCTTCTTCCTTAGGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCCTTA
66 GGCACCTTCTTCCTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCCTTA
*
890288 AGTCCAATGTAGCTGGCCTTGAATCAGCAGATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGA
131 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGA
*
890353 ATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
196 ATTAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
*
890418 CTTTAAGTCCAATATAGCAGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
261 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
*
890483 GTAGCTGGCCTTGAATCAGCACATTGGCACTTTCAAGTCCAATATAACTGGCCTTGAATCAGCAT
326 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCAT
*
890548 ATTGGCACCTTTTCCATCGTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
391 ATTGGCACCTTTTCCATCGTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCA
* *
890613 AGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATATTTAAGTCCAATGTA
456 AGTCCAATATAGCTGGCCTTAAATCAGCATATTAGCACCTTTTCCATATTTAAGTCCAATGTA
890676 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
*
890741 GGCACCTTCTTCCTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTCTTCCTTA
66 GGCACCTTCTTCCTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCCTTA
890806 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGA
131 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGA
890871 ATTAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
196 ATTAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* *
890936 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAC
261 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
891001 GTAGCTGGCCTTGAATCAGCACATTG
326 GTAGCTGGCCTTGAATCAGCACATTG
891027 AAATCCTTTT
Statistics
Matches: 835, Mismatches: 27, Indels: 20
0.95 0.03 0.02
Matches are distributed among these distances:
518 676 0.81
519 1 0.00
520 3 0.00
521 84 0.10
522 2 0.00
523 1 0.00
524 66 0.08
525 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (518 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
GGCACCTTCTTCCTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCCTTA
AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGA
ATTAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
GTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCAT
ATTGGCACCTTTTCCATCGTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCA
AGTCCAATATAGCTGGCCTTAAATCAGCATATTAGCACCTTTTCCATATTTAAGTCCAATGTA
Found at i:890982 original size:92 final size:92
Alignment explanation
Indices: 890754--891026 Score: 431
Period size: 92 Copynumber: 2.9 Consensus size: 92
890744 ACCTTCTTCC
* *
890754 TTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTCT-TCCTTAAGTCCAATGTAG
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGTCCAATGTAG
890818 CTGGCCTTGAATCAGCACATTGGCACCT
65 CTGGCCTTGAATCAGCACATTGGCACCT
* * * *
890846 TCAAGTCTAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
890911 TGGCCTTGAATCAGCACATTGGCACCT
66 TGGCCTTGAATCAGCACATTGGCACCT
* *
890938 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAACGT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGT
891003 AGCTGGCCTTGAATCAGCACATTG
63 AGCTGGCCTTGAATCAGCACATTG
891027 AAATCCTTTT
Statistics
Matches: 165, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
91 1 0.01
92 122 0.74
93 3 0.02
95 39 0.24
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGC
TGGCCTTGAATCAGCACATTGGCACCT
Found at i:891147 original size:67 final size:68
Alignment explanation
Indices: 891039--891165 Score: 168
Period size: 67 Copynumber: 1.9 Consensus size: 68
891029 ATCCTTTTTC
* * * *
891039 TCATCTTTAAGCCTAATATCGTTGGTCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
891103 CCT
66 CCT
* * *
891106 TCATCTTTAAGTCC-AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
891166 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 45 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
CCT
Found at i:891286 original size:227 final size:228
Alignment explanation
Indices: 890954--891380 Score: 578
Period size: 227 Copynumber: 1.9 Consensus size: 228
890944 CCAATATAGC
* * * *
890954 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAACGTAGCTGGCCTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAACGTAGCTGACCGTGAATCA
* *
891019 GCACATTGAAATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGTCGTGAATCAACATATTGG-
66 GCACATTGAAATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
* * *
891083 CATCTTTATCACTTTTC-TCAC-CTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATA
131 CAT-TTTATCACTCTTCATC-CTCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
*
891146 TTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
194 GTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
891181 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AACGTAGCTGACCGTGAAT
* * *
891244 CAGTACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGAAATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * *
891308 GGTCCTTTTATCACTCTTCATCCTCATCATTTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
891373 AGTGGCAC
193 AGTGGCAC
891381 ATTGCAATGA
Statistics
Matches: 173, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
226 7 0.04
227 118 0.68
228 48 0.28
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAACGTAGCTGACCGTGAATCA
GCACATTGAAATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:891295 original size:55 final size:52
Alignment explanation
Indices: 891158--891300 Score: 142
Period size: 55 Copynumber: 2.7 Consensus size: 52
891148 GGCACCTTCA
* * *
891158 TCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTC
1 TCATCTTT-AAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACATTTTTC
* ** * * * *
891211 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGTACATTGACATCCTTTTTC
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACA---TTTTTC
* *
891266 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCA
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCA
891301 ACGTATTGGT
Statistics
Matches: 69, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
52 29 0.42
53 7 0.10
55 33 0.48
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (52 bp):
TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACATTTTTC
Found at i:894267 original size:21 final size:21
Alignment explanation
Indices: 894234--894278 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
894224 TTGCAAGTTG
*
894234 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
894256 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
894276 AAA
1 AAA
894279 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:896102 original size:15 final size:15
Alignment explanation
Indices: 896082--896112 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
896072 TAAAAATGTC
*
896082 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
896097 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
896112 C
1 C
896113 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:897285 original size:21 final size:21
Alignment explanation
Indices: 897252--897292 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
897242 CTAAGTAAAA
897252 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
897273 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
897293 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:897357 original size:20 final size:21
Alignment explanation
Indices: 897326--897384 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
897316 GTCAAAACCC
* *
897326 TGAAAAGTATCGATACACATT
1 TGAATAGTATCGATACACAAT
897347 TGAAT-GTATCGATACA-AAT
1 TGAATAGTATCGATACACAAT
*
897366 TGCATAGTATCGATACACA
1 TGAATAGTATCGATACACA
897385 CAAATATGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.18
20 22 0.67
21 5 0.15
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (21 bp):
TGAATAGTATCGATACACAAT
Found at i:897462 original size:53 final size:53
Alignment explanation
Indices: 897372--897506 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
897362 AAATTGCATA
897372 GTATCGATACACACAAATATG--TCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
897424 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
897477 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
897507 TTGGAAGTAG
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
51 6 0.08
52 14 0.18
53 59 0.75
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:897549 original size:10 final size:10
Alignment explanation
Indices: 897530--897560 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
897520 AATCTCATTT
897530 TCACTGTTCA
1 TCACTGTTCA
*
897540 TCACTATTCA
1 TCACTGTTCA
897550 TCACTGTTCA
1 TCACTGTTCA
897560 T
1 T
897561 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:897595 original size:35 final size:32
Alignment explanation
Indices: 897538--897641 Score: 111
Period size: 34 Copynumber: 3.1 Consensus size: 32
897528 TTTCACTGTT
* *
897538 CATCACTATTCATCACTGTTCATGTATCGATA
1 CATCACTGTTCATCACTATTCATGTATCGATA
*
897570 CATCACT-TTCACGTATCACTATTCATGTATCGTTAAA
1 CATCACTGTT--C--ATCACTATTCATGTATCG--ATA
*
897607 AATCACTGTTCATCACTATTCATGTATCGATA
1 CATCACTGTTCATCACTATTCATGTATCGATA
897639 CAT
1 CAT
897642 ATTTGTGTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
31 2 0.03
32 11 0.18
33 1 0.02
34 18 0.30
35 17 0.28
36 1 0.02
37 8 0.13
38 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (32 bp):
CATCACTGTTCATCACTATTCATGTATCGATA
Found at i:897666 original size:13 final size:13
Alignment explanation
Indices: 897648--897673 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
897638 ACATATTTGT
897648 GTGTATCGATACA
1 GTGTATCGATACA
897661 GTGTATCGATACA
1 GTGTATCGATACA
897674 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:899637 original size:13 final size:13
Alignment explanation
Indices: 899619--899644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
899609 ACATTTTTCT
899619 TTGTATCGATACA
1 TTGTATCGATACA
899632 TTGTATCGATACA
1 TTGTATCGATACA
899645 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:903335 original size:13 final size:13
Alignment explanation
Indices: 903317--903341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
903307 CATAAAGTGT
903317 TGTATCGATACAA
1 TGTATCGATACAA
903330 TGTATCGATACA
1 TGTATCGATACA
903342 TTTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:909177 original size:12 final size:11
Alignment explanation
Indices: 909159--909257 Score: 98
Period size: 12 Copynumber: 8.8 Consensus size: 11
909149 TAGAAAGAAA
909159 AGATAGGAGGG
1 AGATAGGAGGG
909170 ATGATAGGAGGAG
1 A-GATAGGAGG-G
*
909183 AGATAGTA--G
1 AGATAGGAGGG
909192 AGATAGGAGGG
1 AGATAGGAGGG
909203 ATGATAGGAGGAG
1 A-GATAGGAGG-G
909216 AGATAGGA--G
1 AGATAGGAGGG
*
909225 AGATAGGAAGG
1 AGATAGGAGGG
909236 ATGATAGGAGGAG
1 A-GATAGGAGG-G
909249 AGATAGGAG
1 AGATAGGAG
909258 AGATAATAGA
Statistics
Matches: 75, Mismatches: 3, Indels: 19
0.77 0.03 0.20
Matches are distributed among these distances:
9 17 0.23
11 5 0.07
12 47 0.63
13 6 0.08
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.13
Consensus pattern (11 bp):
AGATAGGAGGG
Found at i:909201 original size:33 final size:33
Alignment explanation
Indices: 909159--909262 Score: 190
Period size: 33 Copynumber: 3.2 Consensus size: 33
909149 TAGAAAGAAA
*
909159 AGATAGGAGGGATGATAGGAGGAGAGATAGTAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
909192 AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
*
909225 AGATAGGAAGGATGATAGGAGGAGAGATAGGAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
909258 AGATA
1 AGATA
909263 ATAGAGAGAG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 69 1.00
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.13
Consensus pattern (33 bp):
AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
Found at i:909225 original size:9 final size:9
Alignment explanation
Indices: 909178--909262 Score: 59
Period size: 9 Copynumber: 9.1 Consensus size: 9
909168 GGATGATAGG
909178 AGGAGAGAT
1 AGGAGAGAT
*
909187 AGTAGAGAT
1 AGGAGAGAT
*
909196 AGGAGGGAT
1 AGGAGAGAT
* *
909205 --GATAG-G
1 AGGAGAGAT
909211 AGGAGAGAT
1 AGGAGAGAT
909220 AGGAGAGAT
1 AGGAGAGAT
909229 AGGAAGGATGAT
1 AGG-A-GA-GAT
909241 AGGAGGAGAGAT
1 ---AGGAGAGAT
909253 AGGAGAGAT
1 AGGAGAGAT
909262 A
1 A
909263 ATAGAGAGAG
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
7 3 0.05
8 4 0.07
9 37 0.63
10 1 0.02
11 2 0.03
12 6 0.10
13 2 0.03
14 1 0.02
15 3 0.05
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:909257 original size:42 final size:42
Alignment explanation
Indices: 909211--909290 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
909201 GGATGATAGG
* *
909211 AGGAGAGATAGGAGAGATAGGAAGGATGATAGGAGGAGAGAT
1 AGGAGAGATAAGAGAGAGAGGAAGGATGATAGGAGGAGAGAT
* *
909253 AGGAGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGGAGAGATAAGAGAGAGAGGAAGGATGATAGGAGGAG
909291 GAGAGAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.42, C:0.00, G:0.46, T:0.11
Consensus pattern (42 bp):
AGGAGAGATAAGAGAGAGAGGAAGGATGATAGGAGGAGAGAT
Found at i:909274 original size:18 final size:18
Alignment explanation
Indices: 909247--909296 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
909237 TGATAGGAGG
*
909247 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
909265 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
909283 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
909297 AAAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.00, G:0.46, T:0.10
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:917429 original size:163 final size:160
Alignment explanation
Indices: 916869--917450 Score: 540
Period size: 163 Copynumber: 3.6 Consensus size: 160
916859 TATCATTCTG
* * * *
916869 TACCTTAATGAAAACCCGAAAAGATACGAAAAG--TTTGAAACCTTTTATACCCCTACGAACCCT
1 TACCTTAATGGAAACCCGAAAAGATACAAAAAGTTTTTGAAATCTTTTATACCCCTACGAACCCC
* * * * *
916932 TATAGGAATATAAAAGATT-AAAAAGGCGATTAGA-GTTTGTCTTGATTATGAAAGTGTTAA-TT
66 TATAGGAATATAAAAGATTGAAAAA---GATTA-ATATTTATTTTAATCATGAAAGTGTTAATTT
* * *** * *
916994 TACTTTAAATTGT-TTTATTTTGAAAATATCGTTTCA
127 TAATTT-TATT-TATTT-TTAAAAAAATACCTTTTCA
* * * * * *
917030 TACCTTAACGGAAGCCCGAAAAGATTCGAAAAGTTTTTGAAATCTTTTATACCCCTACGAAACTC
1 TACCTTAATGGAAACCCGAAAAGATACAAAAAGTTTTTGAAATCTTTTATACCCCTACGAACCCC
* * ** * *** * * * * *
917095 TATAGGAATAT-AAAGA-TAAAAAATATTAA-AGTTCCTGTCGGTTATGAAAATATT-AGTTTGA
66 TATAGGAATATAAAAGATTGAAAAAGATTAATA-TTTATTTTAATCATGAAAGTGTTAATTTTAA
**
917156 TTTTATTTATTTTTCCAAAAATACCTTTTCA
130 TTTTATTTATTTTTAAAAAAATACCTTTTCA
* *
917187 TACCTTAATGGAAACCCGAAAAGATACGAGAAGTTTTTGAAATCTTTTATACCCCTACGAACCCC
1 TACCTTAATGGAAACCCGAAAAGATACAAAAAGTTTTTGAAATCTTTTATACCCCTACGAACCCC
*
917252 TATAGGACTATAAAAGATTAGAAAAATGATTAATATTTATTTTAATCATGAAAGTGTTAATTTTA
66 TATAGGAATATAAAAGATT-GAAAAA-GATTAATATTTATTTTAATCATGAAAGTGTTAATTTTA
917317 ATTTTATTTATTTTTTTAAAAAAATACCTTTT-A
129 ATTTTATTTA--TTTTTAAAAAAATACCTTTTCA
* ** * * *
917350 TACCTTAATGGAAACCTGAAATTATACAAAAAGTTTTTGAAATCTTTTATATCCTTACAGATCCC
1 TACCTTAATGGAAACCCGAAAAGATACAAAAAGTTTTTGAAATCTTTTATACCCCTAC-GAACCC
*
917415 CTA-AGGAATATAAAAGATTTAAAAAGATTAATATTT
65 CTATAGGAATATAAAAGATTGAAAAAGATTAATATTT
917451 TAATCTATGA
Statistics
Matches: 349, Mismatches: 57, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
157 84 0.24
158 13 0.04
159 27 0.08
160 5 0.01
161 60 0.17
162 30 0.09
163 104 0.30
164 26 0.07
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (160 bp):
TACCTTAATGGAAACCCGAAAAGATACAAAAAGTTTTTGAAATCTTTTATACCCCTACGAACCCC
TATAGGAATATAAAAGATTGAAAAAGATTAATATTTATTTTAATCATGAAAGTGTTAATTTTAAT
TTTATTTATTTTTAAAAAAATACCTTTTCA
Found at i:918271 original size:129 final size:130
Alignment explanation
Indices: 918027--918287 Score: 350
Period size: 129 Copynumber: 2.0 Consensus size: 130
918017 AAGAAAAATC
* * **
918027 TTCTCGAAAAAATTTTCAGAGAAGAAAACTCTACATTTCAAAAATAGGGAGATTTCAAAGAAAAA
1 TTCTCGAAAAAATTTACAGAGAAGAAAACTCGACATTTCAAAAATAAAGAGATTTCAAAGAAAAA
* *
918092 AATGAAAAACTCATGGAAATGAATGAATTTTTGAACACTACCTTAATATGAAATAAATAATAATA
66 AATGAAAAACTAATGAAAATGAATGAATTTTTGAACACTACCTTAATATGAAATAAATAATAATA
* * * * * **
918157 TTCTCGAAAAAATTTACAGAGTATAAAACTCGATATTTTAGAAATAAAGAGATTTTGAAG-AAAA
1 TTCTCGAAAAAATTTACAGAGAAGAAAACTCGACATTTCAAAAATAAAGAGATTTCAAAGAAAAA
918221 AATGAAAAA-TGAATGAAAATGAATGAATTTTTGAAC-CTTGA-CTTAATATGAAATAAATAATA
66 AATGAAAAACT-AATGAAAATGAATGAATTTTTGAACAC-T-ACCTTAATATGAAATAAATAATA
918283 ATA
128 ATA
918286 TT
1 TT
918288 TAATTAATTT
Statistics
Matches: 115, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
128 2 0.02
129 63 0.55
130 50 0.43
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (130 bp):
TTCTCGAAAAAATTTACAGAGAAGAAAACTCGACATTTCAAAAATAAAGAGATTTCAAAGAAAAA
AATGAAAAACTAATGAAAATGAATGAATTTTTGAACACTACCTTAATATGAAATAAATAATAATA
Found at i:918353 original size:166 final size:164
Alignment explanation
Indices: 918158--918526 Score: 415
Period size: 166 Copynumber: 2.2 Consensus size: 164
918148 ATAATAATAT
* * * *
918158 TCTCGAAAAAATTTACAGAGTATAAAACTCGATATTTTAGA-AATAAAGAGATTTTGAAGAAAAA
1 TCTCGAAAAAATTTAC-GAGTAAAAAACTCG-TATTTTA-ACAAT-AAGAGAATTTCAAAAAAAA
* *** *
918222 A-TGAAAAA-TGAATGAAAATGAATGAATTTTTGAACCTTGACTTAATATGAAATAAATAATAAT
62 ATTCAAAAACT-AATGAAAATGAATGAATTTTTGAAAAATAACTTAATATGAAATAAATAATAAT
* *
918285 ATTTAATTAATTTTAAAAATTAAAAACTAAGAAAAAT-C
126 ATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCC
*
918323 TCTTCGAAAAAATTTACGTAGTAAAAAACTCCGTATTTTAACAATAGGAGAATTTCAAAAAAAAA
1 TC-TCGAAAAAATTTACG-AGTAAAAAACT-CGTATTTTAACAATAAGAGAATTTCAAAAAAAAA
* * * ** *
918388 TTCAAAAACTCATGAAGATGAATGAATTTTTGAAAAATAATTTAATATGATTTAAATAATAATTT
63 TTCAAAAACTAATGAAAATGAATGAATTTTTGAAAAATAACTTAATATGAAATAAATAATAATAT
* *
918453 TTTATGAATTTTAAAAATTAAAGACCAAGAAAAATCC
128 TTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCC
*
918490 TCTCAAAAAAATTTACGGAG-AAGAAAACTCCGTATTT
1 TCTCGAAAAAATTTAC-GAGTAA-AAAACT-CGTATTT
918527 CGAAAACATG
Statistics
Matches: 174, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
165 22 0.13
166 145 0.83
167 7 0.04
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (164 bp):
TCTCGAAAAAATTTACGAGTAAAAAACTCGTATTTTAACAATAAGAGAATTTCAAAAAAAAATTC
AAAAACTAATGAAAATGAATGAATTTTTGAAAAATAACTTAATATGAAATAAATAATAATATTTA
ATGAATTTTAAAAATTAAAAACCAAGAAAAATCC
Found at i:918583 original size:166 final size:166
Alignment explanation
Indices: 918263--918589 Score: 385
Period size: 166 Copynumber: 2.0 Consensus size: 166
918253 GAACCTTGAC
* *
918263 TTAATATGAAATAAATAATAATATTTAATTAATTTTAAAAATTAAAAACTAAGAAAAATCTCTTC
1 TTAATATGAAATAAATAATAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCTCTTC
* * * * * *
918328 GAAAAAATTTACGTAGTAAAAAACTCCGTATTTTAACAATAGGAGAATTTCAAAAAAAAATTCAA
66 AAAAAAATTTACGGAGTAAAAAACTCCGTATTTGAACAACAGGAGAATTGCAAAAAAAAAGTCAA
* * * *
918393 AAACTCATGAAGATGAATGAATTTTTGAAAAATAAT
131 AAACTCAAGAAGATAAAGGAATTTTTCAAAAATAAT
** * * *
918429 TTAATATGATTTAAATAATAATTTTTTATGAATTTTAAAAATTAAAGACCAAGAAAAATC-CTCT
1 TTAATATGAAATAAATAATAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCTCT-T
* *
918493 CAAAAAAATTTACGGAG-AAGAAAACTCCGTATTTCGAA-AACATGAGGAATTGC-AAAAGAAAG
65 CAAAAAAATTTACGGAGTAA-AAAACTCCGTATTT-GAACAACAGGA-GAATTGCAAAAAAAAAG
* *
918555 TCAATAACTTAAGAA-ATAAAAGGAATTTTTCAAAA
127 TCAAAAACTCAAGAAGAT-AAAGGAATTTTTCAAAA
918590 CTGACTTGAC
Statistics
Matches: 135, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
165 6 0.04
166 121 0.90
167 8 0.06
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.30
Consensus pattern (166 bp):
TTAATATGAAATAAATAATAATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCTCTTC
AAAAAAATTTACGGAGTAAAAAACTCCGTATTTGAACAACAGGAGAATTGCAAAAAAAAAGTCAA
AAACTCAAGAAGATAAAGGAATTTTTCAAAAATAAT
Found at i:919524 original size:42 final size:42
Alignment explanation
Indices: 919489--920591 Score: 275
Period size: 42 Copynumber: 26.0 Consensus size: 42
919479 GTAGACGAAG
*** * * *
919489 GATAAAAAAGTCTCCTGGGTTTGAGCTGATGGGTAGACAAAA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* ** * * * *
919531 GATAAAACAGTCTTTCAGGTTTGAGCCAATTGGCAGAC-AAA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * *
919572 GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGATAAAG
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * *
919614 GATAAAAAAGTCTCCCGAGTTTGAGCCAACGGGCAGATAAAA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
**
919656 GATAAAGAAAGTCTCCCAAGTCTGAGCCGACAGGCAGACAAAA
1 GATAAA-AAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * *
919699 GATAAAGAAAGTCTCTCAGGTCTGAGCTGATGGGTAGACAAAG
1 GATAAA-AAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * * *
919742 GATAAAGAAGTCTCTCGAGTCTAAGCTGTAGGGTCTGAGCTGACAGGTAGACAAA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCG-A-----TG-G--G-CA-G-ACA-AAA
* * * * * * * *
919797 AGAAAAAGAAATTTTCCCAGGTCTGAGCTGACGGGTAGACAAAA
1 G-ATAAA-AAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * * * *
919841 GA-AAAAGAAATTTTCCAGGTCTGAGCTGACGGGTAGACAAAA
1 GATAAAA-AAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* ** * *** ** ** * *
919883 GATAAAGAGAGTCTCCCGGGTCTAAATTGACAGATAGATAAAG
1 GATAAA-AAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
*** * * * * * *
919926 GATAAAAAAGTCT-CTTGGATCTGAGTCAACGGGTACACAAAG
1 GATAAAAAAGTCTCCCAAG-TCTGAGCCGATGGGCAGACAAAA
* * ** *
919968 GATAAAGAAGTCTCTCGGGT-TTATGCCGATGGGCCA-ACAAAA
1 GATAAAAAAGTCTCCCAAGTCTGA-GCCGATGGG-CAGACAAAA
* * * * *
920010 GATAAAAAATGTCTCTCGAGTCTGAGTCTATGGGCAGACAGAA
1 GATAAAAAA-GTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * ** * * * *
920053 GATAAAGAAAGTTTCTCGGGTTTGAGCTGATAGGCCGAC--AA
1 GATAAA-AAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * ** * * *
920094 -A-AAAAAAGTCT--CAGGTCTAAGATGATAGGCAAAC-AAG
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * * * *
920131 GA-AAAAGAAGTTTTCTAGGTC-GAACCGATGGGTAGATAAAA
1 GATAAAA-AAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * *
920172 GATAAAGAAAGTCTCTCATGTCTGAGCCAACGGGCAAACAAAA
1 GATAAA-AAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
** ** * * *
920215 GATAAGGAAGTCTCTTAGGTCTGAGCCAAT-GGCTAGACAAAG
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGC-AGACAAAA
* ***** * * * *
920257 GATAAAGAAGTCTTTTGGGTCTAAACTGATGGGCAGACAAAG
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * ** * *
920299 GATAAAGAAGTCTCCTAAGTCTGAGCCAATGGGGTGATAAAC
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * * * *
920341 GATAAAAAAGTCTCTC-GGATTTGAGCTGATGAGTAGATAAAA
1 GATAAAAAAGTCTCCCAAG-TCTGAGCCGATGGGCAGACAAAA
** *
920383 GAT-AAAAAGTCTCTTAAGTCTGAGCCGACGGGCAGACAAACA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAA-A
* ** * * *
920425 -ATAAACAAGTCTCCCGGGTCTGAGTCAAAGGGCAGACAAAA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* **** * * * * *
920466 GATAAAGAAGTCTCTTGGGTCTAAGCCAATGAGCAGATAAAG
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * *
920508 GATAAAGAAGTCTCCCAGGTTTGAGCCAATGGG-TGACAAAA
1 GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
* * * * *
920549 GGGTAAAAAAGTCTCCCATGTTTGAGCTGATAGGCAGA-AAAA
1 -GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
920591 G
1 G
920592 GGATGAAGAA
Statistics
Matches: 801, Mismatches: 214, Indels: 93
0.72 0.19 0.08
Matches are distributed among these distances:
36 17 0.02
37 1 0.00
38 11 0.01
39 8 0.01
40 9 0.01
41 88 0.11
42 437 0.55
43 184 0.23
44 9 0.01
45 2 0.00
46 1 0.00
47 1 0.00
48 3 0.00
49 1 0.00
50 1 0.00
51 2 0.00
52 1 0.00
53 1 0.00
54 2 0.00
55 2 0.00
56 5 0.01
57 15 0.02
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (42 bp):
GATAAAAAAGTCTCCCAAGTCTGAGCCGATGGGCAGACAAAA
Found at i:919636 original size:83 final size:83
Alignment explanation
Indices: 919489--920575 Score: 321
Period size: 84 Copynumber: 12.8 Consensus size: 83
919479 GTAGACGAAG
* * * * * * * *
919489 GATAAAAAAGTCTCCTGGGTTTGAGCTGATGGGTAGACAAAAGATAAAACAGTCTTTCAGGTTTG
1 GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAGGTTTG
*
919554 AGCCAATTGGCAGACAAA
66 AGCCAATGGGCAGACAAA
* * *
919572 GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGATAAAGGATAAAAAAGTCTC-CCGAGTTT
1 GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAG-GTTT
* *
919636 GAGCCAACGGGCAGATAAAA
65 GAGCCAATGGGCAGA-CAAA
* ** *
919656 GATAAAGAAAGTCTCCCAAGTCTGAGCCGACAGGCAGACAAAAGATAAAGAAAGTCTCTCAGGTC
1 GATAAAG-AAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAA-AAAGTCTCTCAGGTT
** *
919721 TGAGCTGATGGGTAGACAAA
64 TGAGCCAATGGGCAGACAAA
* * * *
919741 GGATAAAGAAGTCTCTCGAGTCTAAGCTG-TAGGGTCTGAGCTGACAGGTAGACA-AAAGAAAAA
1 -GATAAAGAAGTCTCCCGAGTCTGAGCCGAT-GGG-C--A---GACA---A-A-AGATA-AAAAA
* * * ** * *
919804 GAAATTTTCCCAGGTCTGAGCTGACGGGTAGACAAAA
52 G----TCTCTCAGGTTTGAGCCAATGGGCAGAC-AAA
* * * * * * * * * * *
919841 GAAAAAGAAATTTTCC-AGGTCTGAGCTGACGGGTAGACAAAAGATAAAGAGAGTCTCCCGGGTC
1 GATAAAGAAGTCTCCCGA-GTCTGAGCCGATGGGCAGACAAAAGATAAA-AAAGTCTCTCAGGTT
* **** ** ** *
919905 TAAATTGACAGATAGATAAA
64 TGAGCCAATGGGCAGACAAA
* ** * * * * * * * *
919925 GGATAAAAAAGTCTCTTG-GATCTGAGTCAACGGGTACACAAAGGATAAAGAAGTCTCTCGGGTT
1 -GATAAAGAAGTCTCCCGAG-TCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAGGTT
*
919989 T-ATGCCGATGGGCCA-ACAAAA
64 TGA-GCCAATGGG-CAGAC-AAA
* * * * * * *
920010 GATAAAAAATGTCTCTCGAGTCTGAGTCTATGGGCAGACAGAAGATAAAGAAAGTTTCTCGGGTT
1 GATAAAGAA-GTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAA-AAAGTCTCTCAGGTT
** * *
920075 TGAGCTGATAGGCCGACAAA
64 TGAGCCAATGGGCAGACAAA
* * ** * * * *
920095 -A-AAA-AAGTCT-CAG-GTCTAAGATGATAGGCAAAC-AAGGA-AAAAGAAGT-TTTCTAGG-T
1 GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAAA-AAGTCTCTC-AGGTT
* * * * *
920151 CGAACCGATGGGTAGATAAAA
64 TGAGCCAATGGGCAGA-CAAA
* * * * ** * *
920172 GATAAAGAAAGTCTCTC-ATGTCTGAGCCAACGGGCAAACAAAAGATAAGGAAGTCTCTTAGGTC
1 GATAAAG-AAGTCTCCCGA-GTCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAGGTT
920236 TGAGCCAAT-GGCTAGACAAA
64 TGAGCCAATGGGC-AGACAAA
*** * * * * * * * *
920256 GGATAAAGAAGTCTTTTGGGTCTAAACTGATGGGCAGACAAAGGATAAAGAAGTCTC-CTAAGTC
1 -GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTC-AGGTT
** *
920320 TGAGCCAATGGGGTGATAAA
64 TGAGCCAATGGGCAGACAAA
* * * * * * * * * *
920340 CGATAAAAAAGTCTCTCG-GATTTGAGCTGATGAGTAGATAAAAGAT-AAAAAGTCTCTTAAGTC
1 -GATAAAGAAGTCTCCCGAG-TCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAGGTT
* *
920403 TGAGCCGACGGGCAGACAAA
64 TGAGCCAATGGGCAGACAAA
* * * * * * * ** *
920423 CAATAAACAAGTCTCCCGGGTCTGAGTCAAAGGGCAGACAAAAGATAAAGAAGTCTCTTGGGTCT
1 -GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAGGTTT
* * *
920488 AAGCCAATGAGCAGATAAA
65 GAGCCAATGGGCAGACAAA
* * * * * *
920507 GGATAAAGAAGTCTCCC-AGGTTTGAGCCAATGGG-TGACAAAAGGGTAAAAAAGTCTCCCATGT
1 -GATAAAGAAGTCTCCCGA-GTCTGAGCCGATGGGCAGACAAAA-GATAAAAAAGTCTCTCAGGT
920570 TTGAGC
63 TTGAGC
920576 TGATAGGCAG
Statistics
Matches: 743, Mismatches: 197, Indels: 127
0.70 0.18 0.12
Matches are distributed among these distances:
76 15 0.02
77 12 0.02
78 4 0.01
79 17 0.02
80 1 0.00
81 10 0.01
82 4 0.01
83 151 0.20
84 218 0.29
85 171 0.23
86 54 0.07
87 3 0.00
88 4 0.01
89 6 0.01
90 1 0.00
91 4 0.01
93 4 0.01
94 1 0.00
95 7 0.01
96 4 0.01
98 1 0.00
99 48 0.06
100 3 0.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.20
Consensus pattern (83 bp):
GATAAAGAAGTCTCCCGAGTCTGAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCAGGTTTG
AGCCAATGGGCAGACAAA
Found at i:919682 original size:43 final size:43
Alignment explanation
Indices: 919552--919725 Score: 201
Period size: 43 Copynumber: 4.1 Consensus size: 43
919542 CTTTCAGGTT
** * *
919552 TGAGCCAATTGGCAGA-CAAAGATAAAG-AAGTCTCCCGAGTC
1 TGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCTCCCAAGTC
* * * * *
919593 TGAGCCGATGGGCAGATAAAGGATAAA-AAAGTCTCCCGAGTT
1 TGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCTCCCAAGTC
919635 TGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCTCCCAAGTC
1 TGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCTCCCAAGTC
* * * * *
919678 TGAGCCGACAGGCAGACAAAAGATAAAGAAAGTCTCTCAGGTC
1 TGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCTCCCAAGTC
919721 TGAGC
1 TGAGC
919726 TGATGGGTAG
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 14 0.12
42 45 0.39
43 56 0.49
ACGTcount: A:0.38, C:0.20, G:0.26, T:0.16
Consensus pattern (43 bp):
TGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCTCCCAAGTC
Found at i:919703 original size:85 final size:83
Alignment explanation
Indices: 919523--919755 Score: 252
Period size: 85 Copynumber: 2.8 Consensus size: 83
919513 GCTGATGGGT
* ** ** *
919523 AGACAAAAGATAAAACAGTCTTTCAGGTTTGAGCCAATTGGCAGACAAAGATAAAGAAGTCTCCC
1 AGACAAAAGATAAAAAAGTCTCCCAGGTTTGAGCCAACGGGCAGAAAAAGATAAAGAAGTCTCCC
* **
919588 GAGTCTGAGCCGATGGGC
66 AAGTCTGAGCCGACAGGC
* *
919606 AGATAAAGGATAAAAAAGTCTCCC-GAGTTTGAGCCAACGGGCAGATAAAAGATAAAGAAAGTCT
1 AGACAAAAGATAAAAAAGTCTCCCAG-GTTTGAGCCAACGGGCAGA-AAAAGATAAAG-AAGTCT
919670 CCCAAGTCTGAGCCGACAGGC
63 CCCAAGTCTGAGCCGACAGGC
* * ** * * *
919691 AGACAAAAGATAAAGAAAGTCTCTCAGGTCTGAGCTGATGGGTAGACAAAGGATAAAGAAGTCTC
1 AGACAAAAGATAAA-AAAGTCTCCCAGGTTTGAGCCAACGGGCAGA-AAAAGATAAAGAAGTCTC
919756 TCGAGTCTAA
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
82 1 0.01
83 36 0.29
84 10 0.08
85 43 0.35
86 33 0.27
87 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (83 bp):
AGACAAAAGATAAAAAAGTCTCCCAGGTTTGAGCCAACGGGCAGAAAAAGATAAAGAAGTCTCCC
AAGTCTGAGCCGACAGGC
Found at i:919834 original size:43 final size:42
Alignment explanation
Indices: 919773--919890 Score: 209
Period size: 43 Copynumber: 2.8 Consensus size: 42
919763 TAAGCTGTAG
*
919773 GGTCTGAGCTGACAGGTAGACAAAAGAAAAAGAAATTTTCCCA
1 GGTCTGAGCTGACGGGTAGACAAAAGAAAAAGAAATTTT-CCA
919816 GGTCTGAGCTGACGGGTAGACAAAAGAAAAAGAAATTTTCCA
1 GGTCTGAGCTGACGGGTAGACAAAAGAAAAAGAAATTTTCCA
*
919858 GGTCTGAGCTGACGGGTAGACAAAAGATAAAGA
1 GGTCTGAGCTGACGGGTAGACAAAAGAAAAAGA
919891 GAGTCTCCCG
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
42 35 0.48
43 38 0.52
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (42 bp):
GGTCTGAGCTGACGGGTAGACAAAAGAAAAAGAAATTTTCCA
Found at i:919868 original size:99 final size:99
Alignment explanation
Indices: 919675--919868 Score: 255
Period size: 99 Copynumber: 2.0 Consensus size: 99
919665 AGTCTCCCAA
* * *
919675 GTCTGAGCCGACAGGCAGACAAAAGATAAAGAAAGTCTCTCAGGTCTGAGCTGATGGGTAGACAA
1 GTCTGAGCCGACAGGCAGACAAAAGAAAAAGAAAGTCTCCCAGGTCTGAGCTGACGGGTAGACAA
* * * *
919740 AGGATAAAGAAGTCTCTCGAGTCTAAGCTGTAGG
66 AAGAAAAAGAAATCTCTCCAGTCTAAGCTGTAGG
* * * *
919774 GTCTGAGCTGACAGGTAGACAAAAGAAAAAGAAATTTTCCCAGGTCTGAGCTGACGGGTAGACAA
1 GTCTGAGCCGACAGGCAGACAAAAGAAAAAGAAAGTCTCCCAGGTCTGAGCTGACGGGTAGACAA
* *
919839 AAGAAAAAGAAAT-TTTCCAGGTCTGAGCTG
66 AAGAAAAAGAAATCTCTCCA-GTCTAAGCTG
919869 ACGGGTAGAC
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
98 4 0.05
99 77 0.95
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (99 bp):
GTCTGAGCCGACAGGCAGACAAAAGAAAAAGAAAGTCTCCCAGGTCTGAGCTGACGGGTAGACAA
AAGAAAAAGAAATCTCTCCAGTCTAAGCTGTAGG
Found at i:920416 original size:209 final size:211
Alignment explanation
Indices: 920157--920563 Score: 527
Period size: 209 Copynumber: 1.9 Consensus size: 211
920147 AGGTCGAACC
* * *
920157 GATGGGTAGATAAAAGATAAAGAAAGTCTCTCATGTCTGAGCCAACGGGCAAACAAA-AGATAAG
1 GATGAGTAGATAAAAGATAAAGAAAGTCTCTCAAGTCTGAGCCAACGGGCAAACAAACA-ATAAA
* ** * * * * **
920221 GAAGTCTCTTAGGTCTGAG-CCAATGGCTAGACAAAGGATAAAGAAGTCTTTTGGGTCTAAACTG
65 CAAGTCTCCCAGGTCTGAGTCAAAGGGC-AGACAAAAGATAAAGAAGTCTCTTGGGTCTAAACCA
* * *
920285 ATGGGCAGACAAAGGATAAAGAAGTCTCCTAAGTCTGAGCCAATGGGGTGA-TAAACGATAAAAA
129 ATGAGCAGACAAAGGATAAAGAAGTCTCCCAAGTCTGAGCCAAT-GGGTGACAAAACGATAAAAA
920349 AGTCTCTCGGATTTGAGCT
193 AGTCTCTCGGATTTGAGCT
* * *
920368 GATGAGTAGATAAAAGAT-AA-AAAGTCTCTTAAGTCTGAGCCGACGGGCAGACAAACAATAAAC
1 GATGAGTAGATAAAAGATAAAGAAAGTCTCTCAAGTCTGAGCCAACGGGCAAACAAACAATAAAC
* *
920431 AAGTCTCCCGGGTCTGAGTCAAAGGGCAGACAAAAGATAAAGAAGTCTCTTGGGTCTAAGCCAAT
66 AAGTCTCCCAGGTCTGAGTCAAAGGGCAGACAAAAGATAAAGAAGTCTCTTGGGTCTAAACCAAT
* * * * *
920496 GAGCAGATAAAGGATAAAGAAGTCTCCCAGGTTTGAGCCAATGGGTGACAAAAGGGTAAAAAAGT
131 GAGCAGACAAAGGATAAAGAAGTCTCCCAAGTCTGAGCCAATGGGTGACAAAACGATAAAAAAGT
920561 CTC
196 CTC
920564 CCATGTTTGA
Statistics
Matches: 168, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
208 6 0.04
209 136 0.81
210 9 0.05
211 17 0.10
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (211 bp):
GATGAGTAGATAAAAGATAAAGAAAGTCTCTCAAGTCTGAGCCAACGGGCAAACAAACAATAAAC
AAGTCTCCCAGGTCTGAGTCAAAGGGCAGACAAAAGATAAAGAAGTCTCTTGGGTCTAAACCAAT
GAGCAGACAAAGGATAAAGAAGTCTCCCAAGTCTGAGCCAATGGGTGACAAAACGATAAAAAAGT
CTCTCGGATTTGAGCT
Found at i:920422 original size:167 final size:168
Alignment explanation
Indices: 920211--920521 Score: 367
Period size: 167 Copynumber: 1.9 Consensus size: 168
920201 ACGGGCAAAC
* * * ** * ***
920211 AAAAGATAAGGAAGTCTCTTAGGTCTGAGCCAATGGCTAGACAAAGGATAAAGAAGTCTTTTGGG
1 AAAAGATAAGAAAGTCTCTTAAGTCTGAGCCAAGGGCTAGACAAACAATAAACAAGTCTCCCGGG
* * * * * **
920276 TCTAAACT-GATGGGCAGACAAAGGATAAAGAAGTCTCCTAAGTCTGAGCCAATGGGGTGATAAA
66 TCT-AACTCAAAGGGCAGACAAAAGATAAAGAAGTCTCCTAAGTCTAAGCCAATGAGCAGATAAA
920340 CGATAAAAAAGTCTCTCGGATTTGAGCTGATGAGTAGAT
130 CGATAAAAAAGTCTCTCGGATTTGAGCTGATGAGTAGAT
*
920379 AAAAGATAA-AAAGTCTCTTAAGTCTGAGCCGACGGGC-AGACAAACAATAAACAAGTCTCCCGG
1 AAAAGATAAGAAAGTCTCTTAAGTCTGAGCC-AAGGGCTAGACAAACAATAAACAAGTCTCCCGG
* * * **
920442 GTCTGAGTCAAAGGGCAGACAAAAGATAAAGAAGTCTCTTGGGTCTAAGCCAATGAGCAGATAAA
65 GTCTAACTCAAAGGGCAGACAAAAGATAAAGAAGTCTCCTAAGTCTAAGCCAATGAGCAGATAAA
* *
920507 GGATAAAGAAGTCTC
130 CGATAAAAAAGTCTC
920522 CCAGGTTTGA
Statistics
Matches: 117, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
166 2 0.02
167 102 0.87
168 13 0.11
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (168 bp):
AAAAGATAAGAAAGTCTCTTAAGTCTGAGCCAAGGGCTAGACAAACAATAAACAAGTCTCCCGGG
TCTAACTCAAAGGGCAGACAAAAGATAAAGAAGTCTCCTAAGTCTAAGCCAATGAGCAGATAAAC
GATAAAAAAGTCTCTCGGATTTGAGCTGATGAGTAGAT
Found at i:920446 original size:125 final size:126
Alignment explanation
Indices: 920180--920521 Score: 303
Period size: 125 Copynumber: 2.7 Consensus size: 126
920170 AAGATAAAGA
* * * * ** * *
920180 AAGTCTCTCATGTCTGAGCCAACGGGCAAACAAAAGATAAGGAAGTCTCTTAGG-TCTGAGCCAA
1 AAGTCTCCCAAGTCTGAGCCAAAGGGCAGACAAAAGATAAAAAAGTCTC-TCGGATCTAAGCCAA
* * * ** * * * * ** *
920244 TG-GCTAGACAAAGGATAAAGAAGTCTTTTGGGTCTAAACTGATGGGCAGACAAAGGATAAAG
65 TGAGC-AGATAAAAGATAAAGAAGTCTCTTAAGTCTGAGCCGACGGGCAGACAAACAATAAAC
* * ** * * * * **
920306 AAGTCTCCTAAGTCTGAGCCAATGGGGTGATAAACGATAAAAAAGTCTCTCGGATTTGAGCTGAT
1 AAGTCTCCCAAGTCTGAGCCAAAGGGCAGACAAAAGATAAAAAAGTCTCTCGGATCTAAGCCAAT
*
920371 GAGTAGATAAAAGATAAA-AAGTCTCTTAAGTCTGAGCCGACGGGCAGACAAACAATAAAC
66 GAGCAGATAAAAGATAAAGAAGTCTCTTAAGTCTGAGCCGACGGGCAGACAAACAATAAAC
** * * * *
920431 AAGTCTCCCGGGTCTGAGTCAAAGGGCAGACAAAAGATAAAGAAGTCTCTTGGGTCTAAGCCAAT
1 AAGTCTCCCAAGTCTGAGCCAAAGGGCAGACAAAAGATAAAAAAGTCTCTCGGATCTAAGCCAAT
*
920496 GAGCAGATAAAGGATAAAGAAGTCTC
66 GAGCAGATAAAAGATAAAGAAGTCTC
920522 CCAGGTTTGA
Statistics
Matches: 167, Mismatches: 46, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
125 100 0.60
126 66 0.40
127 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (126 bp):
AAGTCTCCCAAGTCTGAGCCAAAGGGCAGACAAAAGATAAAAAAGTCTCTCGGATCTAAGCCAAT
GAGCAGATAAAAGATAAAGAAGTCTCTTAAGTCTGAGCCGACGGGCAGACAAACAATAAAC
Found at i:924564 original size:15 final size:16
Alignment explanation
Indices: 924540--924581 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
924530 TCTTTTCTAG
924540 TTCAACAATTTTC-TT
1 TTCAACAATTTTCATT
*
924555 TTCAAGAA-TTTCATT
1 TTCAACAATTTTCATT
924570 TTCAACAATTTT
1 TTCAACAATTTT
924582 TTATTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 4 0.17
15 16 0.70
16 3 0.13
ACGTcount: A:0.31, C:0.17, G:0.02, T:0.50
Consensus pattern (16 bp):
TTCAACAATTTTCATT
Found at i:927938 original size:52 final size:52
Alignment explanation
Indices: 927858--927977 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
927848 AAAAGTTACT
* *
927858 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAGATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
*
927910 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
927962 TGCATGTATCGATACA
1 TGCATGTATCGATACA
927978 AAGATCGGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
Found at i:927990 original size:52 final size:52
Alignment explanation
Indices: 927858--927991 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
927848 AAAAGTTACT
* *
927858 TGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAGATTTGCC
1 TGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
*** *
927910 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
*
927962 TGCATGTATCGATACA-AAGATCGGTGTATC
1 TGCATGTATCGATACATAAGAT-AGTGTATC
927992 CTCCACCTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
51 4 0.06
52 68 0.94
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
Found at i:928669 original size:67 final size:68
Alignment explanation
Indices: 928543--928669 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 68
928533 ATTGGGTTTT
* * * * *
928543 AAAGATGATGAAGGTGCCAATATGTTGATTCAAGGCCAGTAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGTTGATGCAAGGCCAATAATATTGGACCTAAAGATGAAGATG
928608 AGA
66 AGA
* * *
928611 AAAG-TGATAAAGATGCTAATATGTTGATGCACGGCCAATGATATTAGG-CCTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGTTGATGCAAGGCCAATAATATT-GGACCTAAAGATGA
928670 GAAAAAGGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
67 44 0.88
68 6 0.12
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGTTGATGCAAGGCCAATAATATTGGACCTAAAGATGAAGATG
AGA
Found at i:928891 original size:49 final size:49
Alignment explanation
Indices: 928682--929301 Score: 849
Period size: 49 Copynumber: 12.7 Consensus size: 49
928672 AAAAGGATGT
* * *
928682 CAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGC
*
928734 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
** *
928777 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
928825 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * * *
928874 CAATGTGCTGAGTCAAGGCTAGCTACATTGGTCTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
928923 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
928972 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
929021 CAATATGCTGATTTAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
929070 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
929119 CAATATGCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
929168 CAATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
929217 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
929266 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTA
929302 GAAGGGTTGC
Statistics
Matches: 499, Mismatches: 62, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
43 39 0.08
48 46 0.09
49 383 0.77
52 31 0.06
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
Found at i:928955 original size:98 final size:98
Alignment explanation
Indices: 928682--929301 Score: 948
Period size: 98 Copynumber: 6.4 Consensus size: 98
928672 AAAAGGATGT
* * *
928682 CAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATT
928747 CAAGGCCAGCTATATTGGAC-T--T-A--AAGGTGC
63 CAAGGCCAGCTATATTGGACTTAATGATGAAGGTGC
* * * * *
928777 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGGT-GAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
928841 GGCCAGCTATATTGGACTTAAAGATGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGATGAAGGTGC
* *
928874 CAATGTGCTGAGTCAAGGCTAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
928939 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGATGAAGGTGC
*
928972 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTTAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
929037 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGATGAAGGTGC
* *
929070 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAG
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
929135 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGATGAAGGTGC
*
929168 CAATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
929233 GGCCAGCTATATTGGACTTAAAGATGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGATGAAGGTGC
* * * * *
929266 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
929302 GAAGGGTTGC
Statistics
Matches: 486, Mismatches: 32, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
91 38 0.08
92 1 0.00
95 38 0.08
97 43 0.09
98 366 0.75
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (98 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAATGATGAAGGTGC
Found at i:929345 original size:33 final size:33
Alignment explanation
Indices: 929301--929538 Score: 367
Period size: 33 Copynumber: 7.2 Consensus size: 33
929291 TATTGGGCTT
929301 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
929334 AGAATGGTTGCCACCAACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
929366 GGAAGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
929398 GGAAGGGATTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
929432 AGGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 A-GAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
929465 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
*
929499 AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
929532 A-AAGGGT
1 AGAAGGGT
929539 GAAAGATGCC
Statistics
Matches: 190, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
32 45 0.24
33 107 0.56
34 35 0.18
35 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:929378 original size:65 final size:67
Alignment explanation
Indices: 929302--929537 Score: 374
Period size: 67 Copynumber: 3.6 Consensus size: 67
929292 ATTGGGCTTA
*
929302 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGG-TTGCCACCAACTTGTGTGGGCTTT-
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
929365 GG
66 GG
*
929367 GAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
929431 GAG
66 G-G
* *
929434 GAA-GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTA
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
*
929498 GA
66 GG
*
929500 GAAGGTTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGG
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGG
929538 TGAAAGATGC
Statistics
Matches: 159, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
64 6 0.04
65 54 0.34
66 35 0.22
67 64 0.40
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (67 bp):
GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
GG
Found at i:929650 original size:34 final size:34
Alignment explanation
Indices: 929540--930066 Score: 558
Period size: 34 Copynumber: 15.4 Consensus size: 34
929530 AGAAAGGGTG
* * *
929540 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
929573 CAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAA-GG-AA
*
929609 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
929643 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
929677 AAAGAGTGCCACGGAGTTGTGGGCATAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
**
929710 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
929742 GAAG-GTGCCACGGAGTTGTGGGCTTTAACAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAA-AA-GGAA
929778 AAAGAGTGCCACGGAGTTGTGGGCTGTACAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCT-TA-AAAGGAA
* *
929813 AAAG-GTGCCACAGAGTTGTGGGCTGTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCT-TAAAAGGAA
*
929847 AAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
** *
929883 AAAGAGTGCCACAAAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* * *
929918 AAAGTGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCT-TAAAAGGAA
*
929953 AAAG-GTGCCACGGAGTTATGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
** *
929989 AAAGAGTGCCACAAAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* * *
930024 AAAGTGTGCCACAGAGTTGTGGGCTT-TAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
930057 AAA-A-TGCCAC
1 AAAGAGTGCCAC
930067 TAAGTCATGG
Statistics
Matches: 439, Mismatches: 31, Indels: 50
0.84 0.06 0.10
Matches are distributed among these distances:
31 25 0.06
32 6 0.01
33 61 0.14
34 143 0.33
35 83 0.19
36 38 0.09
37 82 0.19
38 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.19
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:929652 original size:71 final size:69
Alignment explanation
Indices: 929520--930066 Score: 586
Period size: 71 Copynumber: 7.9 Consensus size: 69
929510 CACCGACTTG
** * * * *
929520 TGTGGGCTTTAGAAAGGGTGAAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAACAAG-GTGCCA
1 TGTGGGCTTTA-AAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCA
929583 CGGAGT
64 CGGAGT
*
929589 TGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCA
1 TGTGGGCTTTAAAA-GG-AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCA
929654 CGGAGT
64 CGGAGT
* * *
929660 TGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCATAGAAGG-AAAAGAGTGCCACG
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACG
929723 GAGT
66 GAGT
929727 TGTGGGCTTTGAAAA-G---AAG-GTGCCACGGAGTTGTGGGCTTTAACAAGGGAAAAAGAGTGC
1 TGTGGGCTTT-AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAA-AA-GGAAAAAGAGTGC
929787 CACGGAGT
62 CACGGAGT
* * *
929795 TGTGGGCTGTACAAA-GAAAAAG-GTGCCACAGAGTTGTGGGCTGTAAAAAGAAAAAG-GTGCCA
1 TGTGGGCTTTA-AAAGGAAAAAGAGTGCCACGGAGTTGTGGGCT-TAAAAGGAAAAAGAGTGCCA
*
929857 CAGAGT
64 CGGAGT
** * *
929863 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAAAAAGAGTGCC
*
929928 ACAGAGT
63 ACGGAGT
* * *
929935 TGTGGGCTGTAAAAAGAAAAAG-GTGCCACGGAGTTATGGGCTTTGAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAAAAAGAGTGCC
**
929999 ACAAAGT
63 ACGGAGT
* * * *
930006 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTT-TAAGGAAAAA-A-TGCCAC
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCAC
930067 TAAGTCATGG
Statistics
Matches: 425, Mismatches: 30, Indels: 49
0.84 0.06 0.10
Matches are distributed among these distances:
64 19 0.04
65 5 0.01
66 8 0.02
67 29 0.07
68 103 0.24
69 50 0.12
70 53 0.12
71 119 0.28
72 39 0.09
ACGTcount: A:0.35, C:0.12, G:0.34, T:0.19
Consensus pattern (69 bp):
TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACG
GAGT
Found at i:930002 original size:106 final size:105
Alignment explanation
Indices: 929540--930048 Score: 646
Period size: 106 Copynumber: 4.9 Consensus size: 105
929530 AGAAAGGGTG
* * * * *
929540 AAAGATGCCACGAAGTTGTGGAC-TTAAAA-AGAACAAG-GTGCCACGGAGTTGTGGGCTTTAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
* * * *
929602 AGGGAAAAAAGAGTGCCACGGAGTTGTGGGCT-TAGAAGGAA
66 A-AG-AAAAAGAGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
* *
929643 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-AT-A
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* * * * *
929704 GAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG--
65 AAAGAAAAAGAGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
* *
929743 -AAGGTGCCACGGAGTTGTGGGCTTTAACAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTGTAC
1 AAAGGTGCCACGGAGTTGTGGGCTTTAA-AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
929807 AAAGAAAAAG-GTGCCACAGAGTTGTGGGCTGTAAAAAGAA
65 AAAGAAAAAGAGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
* **
929847 AAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAAAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
929912 AAAGAAAAAGTGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
65 AAAGAAAAAGAGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
* **
929953 AAAGGTGCCACGGAGTTATGGGCTTTGAAAAGGGAAAAAGAGTGCCACAAAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
930018 AAAGAAAAAGTGTGCCACAGAGTTGTGGGCT
65 AAAGAAAAAGAGTGCCACAGAGTTGTGGGCT
930049 TTAAGGAAAA
Statistics
Matches: 365, Mismatches: 28, Indels: 23
0.88 0.07 0.06
Matches are distributed among these distances:
98 19 0.05
99 6 0.02
100 2 0.01
101 54 0.15
102 31 0.08
103 14 0.04
104 28 0.08
105 85 0.23
106 126 0.35
ACGTcount: A:0.35, C:0.12, G:0.34, T:0.19
Consensus pattern (105 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
AAGAAAAAGAGTGCCACAGAGTTGTGGGCTGTAAAAAGAA
Found at i:930092 original size:30 final size:30
Alignment explanation
Indices: 930057--930113 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
930047 CTTTAAGGAA
930057 AAAATGCCACTAAGTCATGGACTTTGAGAC
1 AAAATGCCACTAAGTCATGGACTTTGAGAC
* *
930087 AAAATGCCACTGAGTCGTGGACTTTGA
1 AAAATGCCACTAAGTCATGGACTTTGA
930114 AAAGGTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (30 bp):
AAAATGCCACTAAGTCATGGACTTTGAGAC
Found at i:931074 original size:13 final size:13
Alignment explanation
Indices: 931056--931080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
931046 AAAGGGGTTG
931056 TTCTTTTTTTTTC
1 TTCTTTTTTTTTC
931069 TTCTTTTTTTTT
1 TTCTTTTTTTTT
931081 TCTGCATCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTCTTTTTTTTTC
Found at i:931080 original size:16 final size:16
Alignment explanation
Indices: 931059--931110 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
931049 GGGGTTGTTC
931059 TTTTTTTTTCTTCTTT
1 TTTTTTTTTCTTCTTT
* *
931075 TTTTTTTCTGCATCTTT
1 TTTTTTT-TTCTTCTTT
*
931092 TTTGTTTTGT-TTCTTT
1 TTT-TTTTTTCTTCTTT
931108 TTT
1 TTT
931111 GGAAAAGAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 15 0.52
17 10 0.34
18 4 0.14
ACGTcount: A:0.02, C:0.12, G:0.06, T:0.81
Consensus pattern (16 bp):
TTTTTTTTTCTTCTTT
Found at i:938358 original size:52 final size:52
Alignment explanation
Indices: 938278--938397 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
938268 AAAAGTTACT
* *
938278 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAGATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
*
938330 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
938382 TGCATGTATCGATACA
1 TGCATGTATCGATACA
938398 AAGATCGGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCC
Found at i:938410 original size:52 final size:52
Alignment explanation
Indices: 938278--938411 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
938268 AAAAGTTACT
* *
938278 TGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAGATTTGCC
1 TGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
*** *
938330 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
*
938382 TGCATGTATCGATACA-AAGATCGGTGTATC
1 TGCATGTATCGATACATAAGAT-AGTGTATC
938412 CTCCACCTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
51 4 0.06
52 68 0.94
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
Found at i:939313 original size:49 final size:49
Alignment explanation
Indices: 939102--939623 Score: 716
Period size: 49 Copynumber: 10.7 Consensus size: 49
939092 AAAAGGATGT
* *
939102 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGC
*
939154 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
** *
939197 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
939245 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
939294 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
939343 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
939392 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
939441 CAATATGCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
939490 CAATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
939539 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTAC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
939588 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTA
939624 GAAGGGTTGC
Statistics
Matches: 415, Mismatches: 48, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
43 39 0.09
48 46 0.11
49 298 0.72
52 32 0.08
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
Found at i:939667 original size:33 final size:33
Alignment explanation
Indices: 939623--939860 Score: 358
Period size: 33 Copynumber: 7.2 Consensus size: 33
939613 TATTGGGCTT
939623 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
939656 AGAATGGTTGCCACCAACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
939688 GGAAGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
939720 GGAAGGGATTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
*
939754 AGGAA-GGTTGCCACCGACTTGTGTAGGCTTTAG
1 A-GAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
939787 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
*
939821 AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
939854 A-AAGGGT
1 AGAAGGGT
939861 GAAAGATGCC
Statistics
Matches: 188, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
32 45 0.24
33 106 0.56
34 34 0.18
35 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:939700 original size:65 final size:67
Alignment explanation
Indices: 939624--939859 Score: 365
Period size: 67 Copynumber: 3.6 Consensus size: 67
939614 ATTGGGCTTA
*
939624 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGG-TTGCCACCAACTTGTGTGGGCTTT-
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
939687 GG
66 GG
*
939689 GAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
939753 GAG
66 G-G
* * *
939756 GAA-GGTTGCCACCGACTTGTGTAGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTA
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
*
939820 GA
66 GG
*
939822 GAAGGTTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGG
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGG
939860 TGAAAGATGC
Statistics
Matches: 157, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
64 6 0.04
65 54 0.34
66 34 0.22
67 63 0.40
ACGTcount: A:0.19, C:0.18, G:0.36, T:0.28
Consensus pattern (67 bp):
GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
GG
Found at i:939904 original size:33 final size:36
Alignment explanation
Indices: 939899--939967 Score: 104
Period size: 37 Copynumber: 1.9 Consensus size: 36
939889 AAAGAACAAG
*
939899 GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAAGA
1 GTGCCACGGAGTTGTGGGC-TTAAAAGAGAAAAAAGA
*
939936 GTGCCACGGAGTTGTGGGCTTAGAAG-GAAAAA
1 GTGCCACGGAGTTGTGGGCTTAAAAGAGAAAAA
939968 GAGGTGTCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 6 0.19
36 6 0.19
37 19 0.61
ACGTcount: A:0.33, C:0.12, G:0.36, T:0.19
Consensus pattern (36 bp):
GTGCCACGGAGTTGTGGGCTTAAAAGAGAAAAAAGA
Found at i:939948 original size:37 final size:36
Alignment explanation
Indices: 939842--939970 Score: 135
Period size: 33 Copynumber: 3.7 Consensus size: 36
939832 CACCGACTTG
** *
939842 TGTGGGCTTTAGAAAGGGTGAAAGA-TGCCACGAAGT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
* * *
939878 TGTGGAC-TTAAAA-AGAACAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
939911 TGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGG-AAAAAGAGTGCCACGGAGT
*
939948 TGTGGGC-TTAGAA-GGAAAAAGAG
1 TGTGGGCTTTAAAAGGGAAAAAGAG
939971 GTGTCTACAC
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
33 20 0.26
34 17 0.22
35 6 0.08
36 16 0.21
37 19 0.24
ACGTcount: A:0.35, C:0.11, G:0.35, T:0.19
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:945755 original size:20 final size:20
Alignment explanation
Indices: 945730--945802 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
945720 ATTTGCCTAC
*
945730 ATGTATCAATACAGTGAATA
1 ATGTATCGATACAGTGAATA
* *
945750 ATGTATCGATACATTGTATA
1 ATGTATCGATACAGTGAATA
* *
945770 ATATATCGATACA-TTATATA
1 ATGTATCGATACAGTGA-ATA
*
945790 ATATATCGATACA
1 ATGTATCGATACA
945803 TCTGGGTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 1 0.02
20 45 0.98
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAGTGAATA
Found at i:945803 original size:20 final size:20
Alignment explanation
Indices: 945747--945803 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
945737 AATACAGTGA
* *
945747 ATAATGTATCGATACATTGT
1 ATAATATATCGATACATTAT
945767 ATAATATATCGATACATTAT
1 ATAATATATCGATACATTAT
945787 ATAATATATCGATACAT
1 ATAATATATCGATACAT
945804 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.39
Consensus pattern (20 bp):
ATAATATATCGATACATTAT
Found at i:945879 original size:13 final size:13
Alignment explanation
Indices: 945861--945885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
945851 ACAAAACTTA
945861 TGTATCGATACAT
1 TGTATCGATACAT
945874 TGTATCGATACA
1 TGTATCGATACA
945886 ATTTGTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:947293 original size:26 final size:27
Alignment explanation
Indices: 947242--947299 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
947232 TTCAAAAAAA
**
947242 AAAAAGAAGAAAGAAAACAATTGAAAC
1 AAAAAGAAGAAAGAAAACAAAGGAAAC
*
947269 AAAAAGAA-AAAGAGAAA-AAAGGAAAT
1 AAAAAGAAGAAAGA-AAACAAAGGAAAC
947295 AAAAA
1 AAAAA
947300 TATGCATGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (27 bp):
AAAAAGAAGAAAGAAAACAAAGGAAAC
Found at i:950675 original size:20 final size:19
Alignment explanation
Indices: 950650--950704 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
950640 TGCCAGTTTT
* *
950650 ATGTATCGATACAATTATGC
1 ATGTATCGATACAATGA-AC
*
950670 ATGTATCGATAAAATGAAC
1 ATGTATCGATACAATGAAC
*
950689 ATTTATCGATACAATG
1 ATGTATCGATACAATG
950705 TATCAATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:955099 original size:9 final size:9
Alignment explanation
Indices: 955085--955111 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
955075 AAATGACTTC
955085 AAATCATCA
1 AAATCATCA
955094 AAATCATCA
1 AAATCATCA
955103 AAATCATCA
1 AAATCATCA
955112 CAATAATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
AAATCATCA
Found at i:955988 original size:19 final size:19
Alignment explanation
Indices: 955964--956026 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
955954 AGCGATACAT
955964 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
955983 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
955996 TGTATCAATACAACACTTA
1 TGTATCGATACAACACTTA
956015 TGTATCGATACA
1 TGTATCGATACA
956027 TTTACTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 8 0.22
14 1 0.03
16 6 0.17
18 1 0.03
19 20 0.56
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:955992 original size:32 final size:32
Alignment explanation
Indices: 955956--956028 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
955946 AGCTTCGTAG
*
955956 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCAATACAACACTTATGTAT
955988 CGATACATTGTATCAATACAACACTTATGTAT
1 CGATACATTGTATCAATACAACACTTATGTAT
956020 CGATACATT
1 CGATACATT
956029 TACTGTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCAATACAACACTTATGTAT
Found at i:957213 original size:17 final size:17
Alignment explanation
Indices: 957193--957227 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
957183 TGATTATTAA
957193 TTTAATTTTAAATTTCT
1 TTTAATTTTAAATTTCT
*
957210 TTTAATTTTACATTTCT
1 TTTAATTTTAAATTTCT
957227 T
1 T
957228 ATTGTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTAATTTTAAATTTCT
Found at i:959581 original size:17 final size:18
Alignment explanation
Indices: 959546--959579 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
959536 GGATATTTTC
959546 TTTGATATTTTTAATAAA
1 TTTGATATTTTTAATAAA
959564 TTTGA-ATTTTT-ATAAA
1 TTTGATATTTTTAATAAA
959580 ATCAAAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 6 0.38
18 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTGATATTTTTAATAAA
Found at i:964648 original size:30 final size:29
Alignment explanation
Indices: 964594--964897 Score: 145
Period size: 28 Copynumber: 10.4 Consensus size: 29
964584 TATGGGCATT
*
964594 AAAAGATGCCATTGACTC-TCGGGCTTTAA
1 AAAAGATGCCACTGACTCAT-GGGCTTTAA
*
964623 AAAAGTATGCCACTAACTCATGGGCTTTGAA
1 AAAAG-ATGCCACTGACTCATGGGCTTT-AA
** **
964654 AGGAGATGCCACTGACTTGTGGGCTTT-A
1 AAAAGATGCCACTGACTCATGGGCTTTAA
* * ** ** *
964682 AAAGGGTGCCACTGGTTTGTGGGCTTTTA
1 AAAAGATGCCACTGACTCATGGGCTTTAA
* * *
964711 AAAGGTACGCCACTAACTCATGGGCTTTGAA
1 AAAAG-ATGCCACTGACTCATGGGCTTT-AA
** * *
964742 AGGAGATGCCACTGAC-CTGTGGGC-TTGA
1 AAAAGATGCCACTGACTC-ATGGGCTTTAA
* *
964770 AAAGGATGCCACTGACTTATGGGCTTT-A
1 AAAAGATGCCACTGACTCATGGGCTTTAA
* * * ** *
964798 AAAGGGTGCCATTGACTTGTGTGCTTTGAA
1 AAAAGATGCCACTGACTCATGGGCTTT-AA
* * * *
964828 AAGAGATACCACTGGCAT-GTGGGCTTT-A
1 AAAAGATGCCACTGAC-TCATGGGCTTTAA
* ** *
964856 AAAAGGTGCCACTGACTTGTGGGCTTTTA
1 AAAAGATGCCACTGACTCATGGGCTTTAA
* *
964885 AAATGGTGCCACT
1 AAAAGATGCCACT
964898 AACTTGAGGG
Statistics
Matches: 212, Mismatches: 49, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
27 1 0.00
28 87 0.41
29 29 0.14
30 85 0.40
31 10 0.05
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (29 bp):
AAAAGATGCCACTGACTCATGGGCTTTAA
Found at i:964701 original size:28 final size:28
Alignment explanation
Indices: 964643--965374 Score: 604
Period size: 28 Copynumber: 25.3 Consensus size: 28
964633 CACTAACTCA
*
964643 TGGGCTTTGAAAGGAGATGCCACTGACTTG
1 TGGGCTTTAAAAGG-G-TGCCACTGACTTG
**
964673 TGGGCTTTAAAAGGGTGCCACTGGTTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* **
964701 TGGGCTTTTAAAA-GGTACGCCACTAACTCA
1 TGGGC-TTTAAAAGGGT--GCCACTGACTTG
* *
964731 TGGGCTTTGAAAGGAGATGCCACTGACCTG
1 TGGGCTTTAAAAGG-G-TGCCACTGACTTG
* * *
964761 TGGGCTTGAAAAGGATGCCACTGACTTA
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
*
964789 TGGGCTTTAAAAGGGTGCCATTGACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* * * * *
964817 TGTGCTTTGAAAAGAGATACCACTGGCATG
1 TGGGCTTT-AAAAG-GGTGCCACTGACTTG
*
964847 TGGGCTTTAAAAAGGTGCCACTGACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* *
964875 TGGGCTTTTAAAATGGTGCCACTAACTTG
1 TGGGC-TTTAAAAGGGTGCCACTGACTTG
* * *** *
964904 AGGGCTTTGAAGGAGGACACCACTGGCTTG
1 TGGGCTTT-AA-AAGGGTGCCACTGACTTG
* * * * *
964934 TGGACTTTGAGAGGGTTCCTCTGACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* **
964962 TGGGCTTGAAAAGGGTTGCCACCAACTTG
1 TGGGCTTTAAAAGGG-TGCCACTGACTTG
* * *
964991 TGGGCTTTGAGAAGGGATGCTA-TCGACTTA
1 TGGGCTTT-AAAAGGG-TGCCACT-GACTTG
* * * * *
965021 TGGGATTTGAGAGGGTGCCGCTAACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* * * * *
965049 TGGGATTTGAGAGGGTGCCGCTAACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* * *
965077 TGGGCTTTAAAAAGGGTGCCACTAACATA
1 TGGGCTTT-AAAAGGGTGCCACTGACTTG
*
965106 TGGGCTTTTAAAAGGGTGGCACTGACTTG
1 TGGGC-TTTAAAAGGGTGCCACTGACTTG
* *
965135 TGGGCTTTGAAAAGGGATGCCATTAACTTG
1 TGGGCTTT-AAAAGGG-TGCCACTGACTTG
965165 TGGGCTTTAAAAGGGTGCCACTGACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* *
965193 TGGGCTTTGAAAAGGGATGCCACTTACTTA
1 TGGGCTTT-AAAAGGG-TGCCACTGACTTG
* * *
965223 TGAGCTTTGAGAGGGTGCCACTGACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* * *
965251 TGGGCTTTAAAAGGGTGCCATTGGCTTA
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* * *
965279 TAGGCTTTGAAAGGTGATGCCACTAACTTG
1 TGGGCTTTAAAAGG-G-TGCCACTGACTTG
* *
965309 TGGGCTTTGAAATGGTGCCACTGACTTG
1 TGGGCTTTAAAAGGGTGCCACTGACTTG
* *
965337 TGGGCTTTAAAAGGTGATACCATTGACTTG
1 TGGGCTTTAAAAGG-G-TGCCACTGACTTG
965367 TGGGCTTT
1 TGGGCTTT
965375 GATAGGGGAT
Statistics
Matches: 561, Mismatches: 116, Indels: 50
0.77 0.16 0.07
Matches are distributed among these distances:
28 237 0.42
29 142 0.25
30 180 0.32
31 1 0.00
32 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
TGGGCTTTAAAAGGGTGCCACTGACTTG
Found at i:964926 original size:87 final size:85
Alignment explanation
Indices: 964630--965374 Score: 461
Period size: 86 Copynumber: 8.6 Consensus size: 85
964620 TAAAAAAGTA
* * *
964630 TGCCACTAAC-TCATGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCTTTAAAAGGGTGCCAC
1 TGCCACTAACTTGA-GGGCTTTG-AAGGAGATACCACTGACTTGTGGGCTTTAAAAAGGTGCCAC
**
964694 TGGTTTGTGGGCTTTTAAAA-GG
64 TGACTTGTGGGC-TTTAAAAGGG
* * * *
964716 TACGCCACTAAC-TCATGGGCTTTGAAAGGAGATGCCACTGACCTGTGGGC-TTGAAAAGGATGC
1 T--GCCACTAACTTGA-GGGCTTTG-AAGGAGATACCACTGACTTGTGGGCTTTAAAAAGG-TGC
*
964779 CACTGACTTATGGGCTTTAAAAGGG
61 CACTGACTTGTGGGCTTTAAAAGGG
* * * * * * *
964804 TGCCATTGACTTGTGTGCTTTGAAAAGAGATACCACTGGCATGTGGGCTTTAAAAAGGTGCCACT
1 TGCCACTAACTTGAGGGCTTTG-AAGGAGATACCACTGACTTGTGGGCTTTAAAAAGGTGCCACT
*
964869 GACTTGTGGGCTTTTAAAATGG
65 GACTTGTGGGC-TTTAAAAGGG
* * * * * * * *
964891 TGCCACTAACTTGAGGGCTTTGAAGGAGGACACCACTGGCTTGTGGACTTTGAGAGGGTTCCTCT
1 TGCCACTAACTTGAGGGCTTTGAAGGA-GATACCACTGACTTGTGGGCTTTAAAAAGGTGCCACT
*
964956 GACTTGTGGGCTTGAAAAGGG
65 GACTTGTGGGCTTTAAAAGGG
* * * * * * * * *
964977 TTGCCACCAACTTGTGGGCTTTGAGAAGG-GATGCTA-TCGACTTATGGGATTTGAGAGGGTGCC
1 -TGCCACTAACTTGAGGGCTTT--GAAGGAGATACCACT-GACTTGTGGGCTTTAAAAAGGTGCC
* * * * *
965040 GCTAACTTGTGGGATTTGAGAGGG
62 ACTGACTTGTGGGCTTTAAAAGGG
* * * * * * * * *
965064 TGCCGCTAACTTGTGGGCTTTAAAAAGG-G-TGCCACTAACATATGGGCTTTTAAAAGGGTGGCA
1 TGCCACTAACTTGAGGGCTTT--GAAGGAGATACCACTGACTTGTGGGC-TTTAAAAAGGTGCCA
965127 CTGACTTGTGGGCTTTGAAAAGGG
63 CTGACTTGTGGGCTTT-AAAAGGG
* * * * *
965151 ATGCCATTAACTTGTGGGCTTTAAAAGG-G-TGCCACTGACTTGTGGGCTTTGAAAAGGGATGCC
1 -TGCCACTAACTTGAGGGCTTT-GAAGGAGATACCACTGACTTGTGGGCTTT-AAAAAGG-TGCC
* * * * *
965214 ACTTACTTATGAGCTTTGAGAGGG
62 ACTGACTTGTGGGCTTTAAAAGGG
* * * * * * * * * *
965238 TGCCACTGACTTGTGGGCTTTAAAAGG-G-TGCCATTGGCTTATAGGCTTTGAAAGGTGATGCCA
1 TGCCACTAACTTGAGGGCTTT-GAAGGAGATACCACTGACTTGTGGGCTTTAAAAAG-G-TGCCA
* * *
965301 CTAACTTGTGGGCTTTGAAATGG
63 CTGACTTGTGGGCTTTAAAAGGG
* * * * *
965324 TGCCACTGACTTGTGGGCTTTAAAAGGTGATACCATTGACTTGTGGGCTTT
1 TGCCACTAACTTGAGGGCTTT-GAAGGAGATACCACTGACTTGTGGGCTTT
965375 GATAGGGGAT
Statistics
Matches: 546, Mismatches: 92, Indels: 40
0.81 0.14 0.06
Matches are distributed among these distances:
85 17 0.03
86 216 0.40
87 191 0.35
88 117 0.21
89 5 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (85 bp):
TGCCACTAACTTGAGGGCTTTGAAGGAGATACCACTGACTTGTGGGCTTTAAAAAGGTGCCACTG
ACTTGTGGGCTTTAAAAGGG
Found at i:965078 original size:202 final size:202
Alignment explanation
Indices: 964630--965373 Score: 601
Period size: 202 Copynumber: 3.7 Consensus size: 202
964620 TAAAAAAGTA
** * * *
964630 TGCCACTAACTCATGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCAC
1 TGCCACTAACTTGTGGGATTTAAAAGG-G-TGCCACTGACTTGTGGGCTTTAAAAATGGTGCCAC
*** * * * * ** * * *
964694 TGGTTTGTGGGCTTTTAAAAGGTACGCCACTAACTCATGGGCTTTG-AAAGGAGATGCCACTGAC
64 TAACTTGAGGGCTTTGAAAAGG-ACACCACTGACTTGTGGACTTTGAAAAGG-GATGCCATTAAC
* * ** * * * *
964758 CTGTGGGCTTGAAAAGGATGCCACTGACTTATGGGCTTT-AAAAGGG-TGCCATTGACTTGTGTG
127 TTGTGGGCTTGAAAAGGGTGCCACCAACTTGTGGGCTTTGAAAAGGGATGCCACTGACTTATGAG
* * *
964821 CTTTGAAAAGAGA
192 ATTTG-AGAG-GG
* ** * * * *
964834 TACCACTGGCATGTGGGCTTTAAAAAGGTGCCACTGACTTGTGGGCTTTTAAAATGGTGCCACTA
1 TGCCACTAACTTGTGGGATTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAATGGTGCCACTA
* * * * *
964899 ACTTGAGGGCTTTGAAGGAGGACACCACTGGCTTGTGGACTTTG-AGAGGG-TTCC-TCTGACTT
66 ACTTGAGGGCTTTGAA-AAGGACACCACTGACTTGTGGACTTTGAAAAGGGATGCCAT-TAACTT
* * *
964961 GTGGGCTTGAAAAGGGTTGCCACCAACTTGTGGGCTTTGAGAAGGGATGCTA-TCGACTTATGGG
129 GTGGGCTTGAAAAGGG-TGCCACCAACTTGTGGGCTTTGAAAAGGGATGCCACT-GACTTATGAG
965025 ATTTGAGAGGG
192 ATTTGAGAGGG
* * * * * *
965036 TGCCGCTAACTTGTGGGATTTGAGAGGGTGCCGCTAACTTGTGGGCTTTAAAAAGGGTGCCACTA
1 TGCCACTAACTTGTGGGATTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAATGGTGCCACTA
* * **** *
965101 ACAT-ATGGGCTTTTAAAAGGGTGGCACTGACTTGTGGGCTTTGAAAAGGGATGCCATTAACTTG
66 ACTTGA-GGGCTTTGAAAAGGACACCACTGACTTGTGGACTTTGAAAAGGGATGCCATTAACTTG
* ** * *
965165 TGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGATGCCACTTACTTATGAGCTT
130 TGGGCTTGAAAAGGGTGCCACCAACTTGTGGGCTTTGAAAAGGGATGCCACTGACTTATGAGATT
965230 TGAGAGGG
195 TGAGAGGG
* * * * * * ** *
965238 TGCCACTGACTTGTGGGCTTTAAAAGGGTGCCATTGGCTTATAGGCTTTGAAAGGTGATGCCACT
1 TGCCACTAACTTGTGGGATTTAAAAGGGTGCCACTGACTTGTGGGCTTT-AAAAATGGTGCCACT
* * ** * * *
965303 AACTTGTGGGCTTTGAAATGG-TGCCACTGACTTGTGGGCTTT-AAAAGGTGATACCATTGACTT
65 AACTTGAGGGCTTTGAAAAGGACACCACTGACTTGTGGACTTTGAAAAGG-GATGCCATTAACTT
965366 GTGGGCTT
129 GTGGGCTT
965374 TGATAGGGGA
Statistics
Matches: 434, Mismatches: 91, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
201 50 0.12
202 237 0.55
203 108 0.25
204 39 0.09
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (202 bp):
TGCCACTAACTTGTGGGATTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAATGGTGCCACTA
ACTTGAGGGCTTTGAAAAGGACACCACTGACTTGTGGACTTTGAAAAGGGATGCCATTAACTTGT
GGGCTTGAAAAGGGTGCCACCAACTTGTGGGCTTTGAAAAGGGATGCCACTGACTTATGAGATTT
GAGAGGG
Found at i:965374 original size:144 final size:142
Alignment explanation
Indices: 964614--965381 Score: 698
Period size: 144 Copynumber: 5.3 Consensus size: 142
964604 ATTGACTCTC
* * * **
964614 GGGCTTTAAAAAAGTATGCCACTAACTCATGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCT
1 GGGCTTT-AAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGG-G-TGCCACTGACTTGTGGGCT
* * * * **
964679 TTAAAAGGGTGCCACTGGTTTGTGGGCTTTTAAAAGGTACGCCACTAACTCATGGGCTTTGAAAG
63 TTAAAAGGGTGCCACTGGCTTGTGGGC-TTTGAAAGGGATGCCACTAACTTGTGGGCTTTGAAAG
*
964744 GAGATGCCACTGACCTGT
127 G-G-TGCCACTGACTTGT
* * * * *
964762 GGGCTTGAAAA-GGATGCCACTGACTTATGGGCTTTAAAAGGGTGCCATTGACTTGTGTGCTTTG
1 GGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT-
* * * * * * * *
964826 AAAAGAGATACCACTGGCATGTGGGCTTTAAAAAGG-TGCCACTGACTTGTGGGCTTTTAAAATG
65 AAAAG-GGTGCCACTGGCTTGTGGGCTTTGAAAGGGATGCCACTAACTTGTGGGC-TTTGAAAGG
* *
964890 GTGCCACTAACTTGA
128 GTGCCACTGACTTGT
* * ** * * * * * *
964905 GGGCTTTGAAGGAGGACACCACTGGCTTGTGGACTTTGAGAGGGTTCCTCTGACTTGTGGGCTTG
1 GGGCTTTAAAAG-GGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT
*** * * * * *
964970 AAAAGGGTTGCCACCAACTTGTGGGCTTTGAGAAGGGATGCTA-TCGACTTATGGGATTTGAGAG
65 AAAAGGG-TGCCACTGGCTTGTGGGCTTTGA-AAGGGATGCCACT-AACTTGTGGGCTTTGAAAG
* *
965034 GGTGCCGCTAACTTGT
127 GGTGCCACTGACTTGT
* * * * * * * * *
965050 GGGATTTGAGAGGG-TGCCGCTAACTTGTGGGCTTTAAAAAGGGTGCCACTAACATATGGGCTTT
1 GGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTT-GAAAGGGTGCCACTGACTTGTGGGC-TT
* * * *
965114 TAAAAGGGTGGCACTGACTTGTGGGCTTTGAAAAGGGATGCCATTAACTTGTGGGCTTTAAAAGG
64 TAAAAGGGTGCCACTGGCTTGTGGGCTTTG-AAAGGGATGCCACTAACTTGTGGGCTTTGAAAGG
965179 GTGCCACTGACTTGT
128 GTGCCACTGACTTGT
* * * *
965194 GGGCTTTGAAAAGGGATGCCACTTACTTATGAGCTTTGAGAGGGTGCCACTGACTTGTGGGCTTT
1 GGGCTTT-AAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT
* * * *
965259 AAAAGGGTGCCATTGGCTTATAGGCTTTGAAAGGTGATGCCACTAACTTGTGGGCTTTGAAATGG
65 AAAAGGGTGCCACTGGCTTGTGGGCTTTGAAAGG-GATGCCACTAACTTGTGGGCTTTGAAAGGG
965324 TGCCACTGACTTGT
129 TGCCACTGACTTGT
* * *
965338 GGGCTTTAAAAGGTGATACCATTGACTTGTGGGCTTTGATAGGG
1 GGGCTTTAAAAGG-GATGCCACTGACTTGTGGGCTTTGAAAGGG
965382 GATTTGGAGG
Statistics
Matches: 496, Mismatches: 107, Indels: 38
0.77 0.17 0.06
Matches are distributed among these distances:
143 46 0.09
144 238 0.48
145 130 0.26
146 72 0.15
147 4 0.01
148 6 0.01
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (142 bp):
GGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTA
AAAGGGTGCCACTGGCTTGTGGGCTTTGAAAGGGATGCCACTAACTTGTGGGCTTTGAAAGGGTG
CCACTGACTTGT
Found at i:965375 original size:58 final size:57
Alignment explanation
Indices: 964643--965381 Score: 605
Period size: 58 Copynumber: 12.8 Consensus size: 57
964633 CACTAACTCA
* * **
964643 TGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGGTTTG
1 TGGGCTTTAAAAGG-GATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * ** *
964701 TGGGCTTTTAAAAGGTACGCCACTAACTCATGGGCTTTGAAAGGAGATGCCACTGACCTG
1 TGGGC-TTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGG-G-TGCCACTGACTTG
* * * *
964761 TGGGCTTGAAAA-GGATGCCACTGACTTATGGGCTTTAAAAGGGTGCCATTGACTTG
1 TGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * * * * *
964817 TGTGCTTTGAAAAGAGATACCACTGGCATGTGGGCTTTAAAAAGGTGCCACTGACTTG
1 TGGGCTTT-AAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * *** *
964875 TGGGCTTTTAAAATGG-TGCCACTAACTTGAGGGCTTTGAAGGAGGACACCACTGGCTTG
1 TGGGC-TTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAA--AGGGTGCCACTGACTTG
* * * * * **
964934 TGGACTTTGAGAGGG-TTCCTCTGACTTGTGGGC-TTGAAAAGGGTTGCCACCAACTTG
1 TGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTG-AAAGGG-TGCCACTGACTTG
* * * * * * *
964991 TGGGCTTTGAGAAGGGATGCTA-TCGACTTATGGGATTTGAGAGGGTGCCGCTAACTTG
1 TGGGCTTT-AAAAGGGATGCCACT-GACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * * * * * * *
965049 TGGGATTTGAGAGGG-TGCCGCTAACTTGTGGGCTTTAAAAAGGGTGCCACTAACATA
1 TGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTT-GAAAGGGTGCCACTGACTTG
* * *
965106 TGGGCTTTTAAAAGGG-TGGCACTGACTTGTGGGCTTTGAAAAGGGATGCCATTAACTTG
1 TGGGC-TTTAAAAGGGATGCCACTGACTTGTGGGCTTTG-AAAGGG-TGCCACTGACTTG
* *
965165 TGGGCTTTAAAAGGG-TGCCACTGACTTGTGGGCTTTGAAAAGGGATGCCACTTACTTA
1 TGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTG-AAAGGG-TGCCACTGACTTG
* * * * * * *
965223 TGAGCTTTGAGAGGG-TGCCACTGACTTGTGGGCTTTAAAAGGGTGCCATTGGCTTA
1 TGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * *
965279 TAGGCTTTGAAAGGTGATGCCACTAACTTGTGGGCTTTGAAATGGTGCCACTGACTTG
1 TGGGCTTTAAAAGG-GATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * *
965337 TGGGCTTTAAAAGGTGATACCATTGACTTGTGGGCTTTGATAGGG
1 TGGGCTTTAAAAGG-GATGCCACTGACTTGTGGGCTTTGAAAGGG
965382 GATTTGGAGG
Statistics
Matches: 542, Mismatches: 118, Indels: 42
0.77 0.17 0.06
Matches are distributed among these distances:
56 55 0.10
57 72 0.13
58 332 0.61
59 65 0.12
60 18 0.03
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (57 bp):
TGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
Found at i:966772 original size:15 final size:15
Alignment explanation
Indices: 966738--966771 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
966728 ATCCTGACCC
*
966738 TTTTTCTTTTTCTCT
1 TTTTTCTTCTTCTCT
966753 TTTTTCTTCTTCT-T
1 TTTTTCTTCTTCTCT
966767 TTTTT
1 TTTTT
966772 TATTGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTCTTCTCT
Found at i:972524 original size:20 final size:20
Alignment explanation
Indices: 972479--972531 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
972469 ACACACCCAA
972479 ATGTATCGATACAAATTGCT
1 ATGTATCGATACAAATTGCT
* *
972499 AAGTATCGATACATATTGCT
1 ATGTATCGATACAAATTGCT
* *
972519 TTGTATCAATACA
1 ATGTATCGATACA
972532 CTATGGAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAAATTGCT
Found at i:976108 original size:29 final size:27
Alignment explanation
Indices: 976053--976114 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
976043 ACAATTTCTT
* *
976053 AGTATCGATAGATATGGAAAATGCAGA
1 AGTATCGATACATATGGAAAATCCAGA
* *
976080 TGTATCGATACATTCTGGAAAAATCCAGA
1 AGTATCGATACA-TATGG-AAAATCCAGA
976109 AGTATC
1 AGTATC
976115 TAAGTTAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 10 0.36
28 4 0.14
29 14 0.50
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (27 bp):
AGTATCGATACATATGGAAAATCCAGA
Found at i:977183 original size:42 final size:42
Alignment explanation
Indices: 977135--977217 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
977125 TTTCTTAGTT
* * *
977135 AGCTCA-TTATTTTCATCTTGTAATTCA-TTTCTTTTCTTTTCC
1 AGCTCATTTATTTTC-TCCTCTAATTCACTTAC-TTTCTTTTCC
977177 AGCTCATTTATTTTCTCCTCTAATTCACTTACTTTCTTTTC
1 AGCTCATTTATTTTCTCCTCTAATTCACTTACTTTCTTTTC
977218 AAGAATATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 25 0.69
43 11 0.31
ACGTcount: A:0.17, C:0.24, G:0.04, T:0.55
Consensus pattern (42 bp):
AGCTCATTTATTTTCTCCTCTAATTCACTTACTTTCTTTTCC
Found at i:978865 original size:31 final size:32
Alignment explanation
Indices: 978814--978904 Score: 105
Period size: 36 Copynumber: 2.8 Consensus size: 32
978804 CCTTACAACA
* *
978814 CTATCTTTTGAAGGCTAAGATAGAATC-TCT-
1 CTATCTTTTCAAAGCTAAGATAGAATCTTCTC
978844 CTATCTTTTCACAAGCTAAGATAGAATCTTTCTCC
1 CTATCTTTTCA-AAGCTAAGATAGAATC-TTCT-C
978879 CTATCTTTTTCAAAGGCTAAGATAGA
1 CTATC-TTTTCAAA-GCTAAGATAGA
978905 TACTCTCAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
30 10 0.19
31 15 0.29
33 3 0.06
35 7 0.13
36 17 0.33
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (32 bp):
CTATCTTTTCAAAGCTAAGATAGAATCTTCTC
Found at i:979456 original size:19 final size:19
Alignment explanation
Indices: 979432--979476 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
979422 ATGGTGTATT
979432 GATACAAAGAACACATATC
1 GATACAAAGAACACATATC
*
979451 GATACAAAGAACACGTATC
1 GATACAAAGAACACATATC
979470 GATACAA
1 GATACAA
979477 TGTATCGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.51, C:0.20, G:0.13, T:0.16
Consensus pattern (19 bp):
GATACAAAGAACACATATC
Found at i:980517 original size:84 final size:82
Alignment explanation
Indices: 980367--980558 Score: 214
Period size: 85 Copynumber: 2.4 Consensus size: 82
980357 AATAAAACAT
* * *
980367 GGTTAGAGTATCCT-TCTTTGGAGAGAT-GGGGTGGAATATCCTCGATAATGTAAATTTAAGATT
1 GGTTAGAGTATCCTCT-TTTGGAGAGATAGGGGTGGAACATCCTCGAGAATGTAAATTCAAGA--
980430 TTTTTTTGCAAGAAAAAAAAA
63 TTTTTTTGCAAG-AAAAAAAA
* * * *
980451 GGTTAGAGTATCCTCTTTTGGAGAGATAGGGTTGGAGCATCTTCGAGAATGTGAATTCAAGA-TT
1 GGTTAGAGTATCCTCTTTTGGAGAGATAGGGGTGGAACATCCTCGAGAATGTAAATTCAAGATTT
* * *
980515 TTTTGTAAGAAAAATAG
66 TTTTGCAAGAAAAAAAA
*
980532 GGTTGGAGTATCC-C-TTTGGAGAGATAG
1 GGTTAGAGTATCCTCTTTTGGAGAGATAG
980559 ATTTGGAATA
Statistics
Matches: 95, Mismatches: 11, Indels: 9
0.83 0.10 0.08
Matches are distributed among these distances:
79 13 0.14
80 1 0.01
81 18 0.19
82 10 0.11
84 25 0.26
85 28 0.29
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (82 bp):
GGTTAGAGTATCCTCTTTTGGAGAGATAGGGGTGGAACATCCTCGAGAATGTAAATTCAAGATTT
TTTTGCAAGAAAAAAAA
Found at i:982269 original size:29 final size:29
Alignment explanation
Indices: 982103--982259 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
982093 ATTAAGTCTC
* ** * *
982103 TAAACCTTTCAAAATTACACATTG-CCCC
1 TAAACTTTTCAAAATTATGCTTTGACCCT
* ***
982131 TAAAGTTTTCAAAATTACATTTTGA-CCT
1 TAAACTTTTCAAAATTATGCTTTGACCCT
982159 CTAAACTTTTCAAAATTATG-TTT-----T
1 -TAAACTTTTCAAAATTATGCTTTGACCCT
982183 TCAAACTTTTCAAAATTATGCTTTGACCCT
1 T-AAACTTTTCAAAATTATGCTTTGACCCT
*
982213 TGAACTTTTCAAAATTATGCTTTGACCCT
1 TAAACTTTTCAAAATTATGCTTTGACCCT
982242 TAAACTTTTCAAAATTAT
1 TAAACTTTTCAAAATTAT
982260 TTGTTGACCC
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
23 1 0.01
24 19 0.17
25 3 0.03
28 25 0.23
29 60 0.55
30 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.41
Consensus pattern (29 bp):
TAAACTTTTCAAAATTATGCTTTGACCCT
Found at i:987162 original size:21 final size:21
Alignment explanation
Indices: 987150--987215 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
987140 GTTTCGATAT
987150 ATTCACATAATGTATCAATAC
1 ATTCACATAATGTATCAATAC
987171 ATTCACATAATGTATCAATAC
1 ATTCACATAATGTATCAATAC
* *
987192 ATTTACATCATGTATCAATAC
1 ATTCACATAATGTATCAATAC
987213 ATT
1 ATT
987216 ACAATTGTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (21 bp):
ATTCACATAATGTATCAATAC
Found at i:989761 original size:33 final size:33
Alignment explanation
Indices: 989724--989790 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
989714 TTCAACGATT
989724 TGTATCGATACATAAATTATTGTATCGATACAA
1 TGTATCGATACATAAATTATTGTATCGATACAA
** *
989757 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAATTATTGTATCGATACAA
989790 T
1 T
989791 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAATTATTGTATCGATACAA
Found at i:989762 original size:13 final size:13
Alignment explanation
Indices: 989744--989768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
989734 CATAAATTAT
989744 TGTATCGATACAA
1 TGTATCGATACAA
989757 TGTATCGATACA
1 TGTATCGATACA
989769 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:989849 original size:13 final size:13
Alignment explanation
Indices: 989831--989855 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
989821 ATCACTTAAA
989831 TGTATCGATACAT
1 TGTATCGATACAT
989844 TGTATCGATACA
1 TGTATCGATACA
989856 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:989922 original size:52 final size:52
Alignment explanation
Indices: 989866--989992 Score: 209
Period size: 52 Copynumber: 2.4 Consensus size: 52
989856 CTGATCTTTG
* *
989866 TATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAATC
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATC
** *
989918 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATC
989970 TATCGATACATGCAGGCAAATTT
1 TATCGATACATGCAGGCAAATTT
989993 TCATATTTCG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATC
Found at i:994132 original size:10 final size:10
Alignment explanation
Indices: 994117--994143 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
994107 TGCTAACTAA
994117 GTTTTTGTTT
1 GTTTTTGTTT
994127 GTTTTTGTTT
1 GTTTTTGTTT
994137 GTTTTTG
1 GTTTTTG
994144 CTTGATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (10 bp):
GTTTTTGTTT
Found at i:1003841 original size:1 final size:1
Alignment explanation
Indices: 1003835--1003970 Score: 146
Period size: 1 Copynumber: 136.0 Consensus size: 1
1003825 GGCGTCCTCC
* ** * *
1003835 AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACGAAAAAAAAACAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * *
1003900 AACAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAACAAAAACAATAAAAAAACAAACAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1003965 AAAAAA
1 AAAAAA
1003971 GGGGGTCCGG
Statistics
Matches: 108, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 108 1.00
ACGTcount: A:0.90, C:0.09, G:0.01, T:0.01
Consensus pattern (1 bp):
A
Found at i:1003942 original size:65 final size:61
Alignment explanation
Indices: 1003835--1003970 Score: 211
Period size: 65 Copynumber: 2.2 Consensus size: 61
1003825 GGCGTCCTCC
1003835 AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACGAA-AAAAAAACAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAC-AATAAAAAAACAAACAAA
1003896 AAAAAACAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAACAAAAACAATAAAAAAACAAACAAA
1 AAAAAA-AAAAAAAAAAA-AAAAAAAAAAC-AAAAAAAAA-AAAAACAATAAAAAAACAAACAAA
*
1003961 AACAAAAAAA
1 AAAAAAAAAA
1003971 GGGGGTCCGG
Statistics
Matches: 69, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
61 6 0.09
62 11 0.16
63 11 0.16
64 15 0.22
65 26 0.38
ACGTcount: A:0.90, C:0.09, G:0.01, T:0.01
Consensus pattern (61 bp):
AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACAATAAAAAAACAAACAAA
Found at i:1005446 original size:27 final size:28
Alignment explanation
Indices: 1005405--1005463 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
1005395 CATTTATCAC
* *
1005405 CCTTCAAAAGTCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAATCAGTGGCAA
*
1005433 CCTTC-AAAGCCCACAAATCAGTGGCAC
1 CCTTCAAAAGCCCACAAATCAGTGGCAA
1005460 CCTT
1 CCTT
1005464 TTTTCGAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.32, C:0.34, G:0.15, T:0.19
Consensus pattern (28 bp):
CCTTCAAAAGCCCACAAATCAGTGGCAA
Found at i:1005567 original size:30 final size:30
Alignment explanation
Indices: 1005533--1005637 Score: 178
Period size: 30 Copynumber: 3.6 Consensus size: 30
1005523 TTTTCTTTTT
1005533 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1005563 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
*
1005593 AAGCCCACAAGTTAGTGGCAACC-TTT-AA
1 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
*
1005621 AAGCCCACAAGTCAGTG
1 AAGCCCACAAGTTAGTG
1005638 ATGCAAACCT
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 18 0.25
29 3 0.04
30 52 0.71
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (30 bp):
AAGCCCACAAGTTAGTGGCACCCTTTTCAA
Found at i:1005618 original size:60 final size:59
Alignment explanation
Indices: 1005407--1005637 Score: 193
Period size: 60 Copynumber: 3.9 Consensus size: 59
1005397 TTTATCACCC
* *
1005407 TTCAAAAGTCCACAAGTCAGTGGCAACC-TTC-AAAGCCCACAAATCAGTGGCACCCTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTCAGTGGCACCC--TT
* * * * * * * * * *
1005466 TTC-GAAGCCCATAAGTCGGTGGCATCTTTTCCAAAGCTCACAACTCTA-TAGCACTCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTC-AGTGGCAC-CCTT
** * * *
1005525 TTCTTTTTAAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTTAGTGGCACCCTT
1 TTC---AAAAGCCCACAAGTCAGTGGCAACC-TTTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
1005588 TTCAAAAGCCCACAAGTTAGTGGCAACCTTT-AAAAGCCCACAAGTCAGTG
1 TTCAAAAGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTCAGTG
1005638 ATGCAAACCT
Statistics
Matches: 136, Mismatches: 26, Indels: 21
0.74 0.14 0.11
Matches are distributed among these distances:
58 36 0.26
59 14 0.10
60 39 0.29
61 2 0.01
63 25 0.18
64 20 0.15
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (59 bp):
TTCAAAAGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTCAGTGGCACCCTT
Found at i:1005653 original size:60 final size:60
Alignment explanation
Indices: 1005533--1005661 Score: 174
Period size: 60 Copynumber: 2.1 Consensus size: 60
1005523 TTTTCTTTTT
* * * *
1005533 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTTAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCTCAA
1005593 AAGCCCACAAGTTAGTGGCAACC-TTT-AAAAGCCCACAAGTCAGTGATGCAAACC-TCTCAA
1 AAGCCCACAAGTTAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTG--GC-AACCTTCTCAA
1005653 AAGCCCACA
1 AAGCCCACA
1005662 CAAGTTGGTG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
58 18 0.29
59 3 0.05
60 38 0.61
61 3 0.05
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.19
Consensus pattern (60 bp):
AAGCCCACAAGTTAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCTCAA
Found at i:1005749 original size:48 final size:47
Alignment explanation
Indices: 1005677--1005908 Score: 258
Period size: 48 Copynumber: 4.9 Consensus size: 47
1005667 TGGTGGCGTC
* *
1005677 TCCTTTTAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
1 TCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
* *
1005724 TGCCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCT
1 T-CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
* * * *
1005772 TCATATTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCA---
1 TC--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
1005818 -CC-TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--T
* * *
1005865 TCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 T-C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
1005909 ACATCCTTTT
Statistics
Matches: 155, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
42 37 0.24
45 1 0.01
47 2 0.01
48 43 0.28
49 37 0.24
51 1 0.01
52 34 0.22
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (47 bp):
TCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
Found at i:1005837 original size:42 final size:42
Alignment explanation
Indices: 1005778--1005863 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
1005768 ACCTTCATAT
*
1005778 TTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCACC
1 TTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCACC
* *
1005820 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1 TTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCACC
1005862 TT
1 TT
1005864 TTCCATCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (42 bp):
TTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCACC
Found at i:1005856 original size:91 final size:93
Alignment explanation
Indices: 1005729--1005908 Score: 292
Period size: 91 Copynumber: 1.9 Consensus size: 93
1005719 CACCTTGCCT
*
1005729 TTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACC-TT-CATATTTAAGTCCAATGTA
1 TTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTCCATATTTAAGTCCAATGTA
1005792 GCTGACCTTGAATCAGCACATTGGCACC
66 GCTGACCTTGAATCAGCACATTGGCACC
* * *
1005820 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGT
1 TTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACC-TTTCCATATTTAAGTCCAATGT
*
1005885 AGCTGGCCTTGAATCAGCACATTG
65 AGCTGACCTTGAATCAGCACATTG
1005909 ACATCCTTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
91 40 0.49
93 2 0.02
94 39 0.48
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (93 bp):
TTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTCCATATTTAAGTCCAATGTA
GCTGACCTTGAATCAGCACATTGGCACC
Found at i:1005863 original size:21 final size:21
Alignment explanation
Indices: 1005796--1005863 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1005786 AATGTAGCTG
*
1005796 ACCTTGAATCAGCACATTGGC
1 ACCTTGAATCAGCATATTGGC
** *
1005817 ACCTT-AAGTCCAATATAGCTGG-
1 ACCTTGAA-T-CAGCATA-TTGGC
1005839 -CCTTGAATCAGCATATTGGC
1 ACCTTGAATCAGCATATTGGC
1005859 ACCTT
1 ACCTT
1005864 TTCCATCTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 12
0.64 0.13 0.23
Matches are distributed among these distances:
19 3 0.09
20 7 0.21
21 15 0.44
22 6 0.18
23 3 0.09
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (21 bp):
ACCTTGAATCAGCATATTGGC
Found at i:1006820 original size:13 final size:13
Alignment explanation
Indices: 1006802--1006826 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1006792 CATAAAGTGT
1006802 TGTATCGATACAA
1 TGTATCGATACAA
1006815 TGTATCGATACA
1 TGTATCGATACA
1006827 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1006824 original size:33 final size:33
Alignment explanation
Indices: 1006782--1006848 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1006772 TTCAACGATT
1006782 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1006815 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1006848 T
1 T
1006849 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1006907 original size:13 final size:13
Alignment explanation
Indices: 1006889--1006913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1006879 ATCACTTAAA
1006889 TGTATCGATACAT
1 TGTATCGATACAT
1006902 TGTATCGATACA
1 TGTATCGATACA
1006914 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1006978 original size:52 final size:52
Alignment explanation
Indices: 1006922--1007050 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1006912 CACTGATCTT
* *
1006922 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
1006974 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1007026 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1007051 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Done.