Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1825
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85858
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:14286 original size:9 final size:9
Alignment explanation
Indices: 14272--14335 Score: 85
Period size: 9 Copynumber: 7.2 Consensus size: 9
14262 ATTCTTTTTC
14272 AAAAAACAA
1 AAAAAACAA
14281 AAAAAACAA
1 AAAAAACAA
14290 AAAAAAC-A
1 AAAAAACAA
14298 AAAAAACAA
1 AAAAAACAA
*
14307 AAACAACAA
1 AAAAAACAA
* *
14316 AACAAAGAA
1 AAAAAACAA
*
14325 AAAAAAGAA
1 AAAAAACAA
14334 AA
1 AA
14336 GAGAAAAACT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
8 8 0.16
9 41 0.84
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:14301 original size:26 final size:26
Alignment explanation
Indices: 14272--14329 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
14262 ATTCTTTTTC
14272 AAAAAACAAAAAAAACAAAAAAAACA
1 AAAAAACAAAAAAAACAAAAAAAACA
* * *
14298 AAAAAACAAAAACAACAAAACAAAGA
1 AAAAAACAAAAAAAACAAAAAAAACA
14324 AAAAAA
1 AAAAAA
14330 AGAAAAGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (26 bp):
AAAAAACAAAAAAAACAAAAAAAACA
Found at i:14335 original size:26 final size:24
Alignment explanation
Indices: 14271--14335 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 24
14261 CATTCTTTTT
14271 CAAAAAACAAAAAAAACAAAAAAAA
1 CAAAAAA-AAAAAAAACAAAAAAAA
*
14296 CAAAAAAACAAAAACAACAAAACAAA
1 CAAAAAAA-AAAAA-AACAAAAAAAA
* *
14322 GAAAAAAAAGAAAA
1 CAAAAAAAAAAAAA
14336 GAGAAAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 2 0.06
25 16 0.46
26 17 0.49
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (24 bp):
CAAAAAAAAAAAAAACAAAAAAAA
Found at i:15456 original size:115 final size:115
Alignment explanation
Indices: 15316--16070 Score: 764
Period size: 115 Copynumber: 6.5 Consensus size: 115
15306 AAGCAGGATG
* ** *
15316 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAATCCTCAAAGAGCAGGACACCTT
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTT
15380 TTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCCAGACA
66 TTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAG-CAGACA
* *
15431 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGCGGGACGCATT
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--CA--
* * * *
15496 TTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCCCAAAGAGCAG-GA
62 -CCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCCAGTCCTCAAAGAGCAGACA
* * *
15550 -C--C-CCTTTTAAAGCCCACACAAGTAGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGTCTT
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA------
* * * *
15611 CTCCTTTTAAAGCCCACATAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGTAGGACG
60 CACCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCA-GACA
* *
15668 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCCTT
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC--
* *
15733 TTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCCCAAAGAGCAG-GA
64 -T-TTT-AAAGCCCACACAAGTTGGTGGCACC-TTCCAGTCCTCAAAGAGCAGACA
* *
15787 -C--C-CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCCTT
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC-AC--
* **
15848 TTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TCCAGTCCTCAAAGAGCGGGATG
63 --CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC-AGACA
* * *
15903 CCTT-TTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTC
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTT
* *
15967 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAG-GA
66 TTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGACA
* * * * *
16016 ---T-GCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGTCCACAAAGAGCAGGA
1 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGA
16071 TACACTTTAT
Statistics
Matches: 543, Mismatches: 56, Indels: 87
0.79 0.08 0.13
Matches are distributed among these distances:
110 45 0.08
111 4 0.01
113 3 0.01
114 44 0.08
115 181 0.33
116 63 0.12
117 3 0.01
118 5 0.01
119 55 0.10
120 8 0.01
121 73 0.13
122 55 0.10
123 4 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (115 bp):
CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTT
TTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGACA
Found at i:15562 original size:176 final size:173
Alignment explanation
Indices: 15299--16070 Score: 896
Period size: 176 Copynumber: 4.4 Consensus size: 173
15289 GCTTTTTAGC
* * **
15299 CCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAATCCTC
1 CCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCCGTCCTC
* *
15363 AAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCA-
65 AAAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAG-CAG
* *
15427 GACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGC
129 GACA-C--CTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGT
* * * *
15475 CCTCAAAGAGCGGGACGCATTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCGTCCCCA
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCCGTCCTCA
* *
15540 AAGAGCAGGACCCCTTTTAAAGCCCACACAAGTAGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
66 AAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
* * *
15605 CGTCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCCAGT
131 C-AC--CTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGT
* * *
15651 CCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCT
1 CCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCT
* * *
15715 CAAAGAGCGGGACGCCTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCCCAAA
64 CAAAGAGCAGGAC-CC----CTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAA
* *
15779 GAGCAGG--ACC-CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGT
123 GAGCAGGACACCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGT
15827 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC--TCCAGTCCTC
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCTC
* * * *
15890 AAAGAGCGGGATGCCTTTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGA
65 AAAGAGCAGGA--CC---CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGA
15955 GCAGGACACCT-C--TTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGT
125 GCAGGACACCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGT
* * * ** *
16001 CCTCAAAGAGCAGGATGCC-TTTC----AAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCACA
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCCGTCCTCA
16061 AAGAGCAGGA
66 AAGAGCAGGA
16071 TACACTTTAT
Statistics
Matches: 526, Mismatches: 46, Indels: 54
0.84 0.07 0.09
Matches are distributed among these distances:
169 23 0.04
170 15 0.03
171 1 0.00
173 9 0.02
174 111 0.21
175 64 0.12
176 209 0.40
177 45 0.09
178 2 0.00
179 1 0.00
182 41 0.08
183 5 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (173 bp):
CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCCGTCCTCA
AAGAGCAGGACCCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
CACCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGT
Found at i:15597 original size:55 final size:56
Alignment explanation
Indices: 15322--16070 Score: 773
Period size: 55 Copynumber: 12.9 Consensus size: 56
15312 GATGCCTTTT
* * *
15322 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAATCCTCAAAGAGCAGGAC-A
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACTC
* *
15376 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCAGACACCTTC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAG-CAG-GA-C-TC
* * * *
15436 TCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGCGGGACGCATTT
1 -CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA--C--TC
* * *
15497 TCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCCCAAAGAGCAGGAC-C
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAGGACTC
* *
15552 CCTTTTAAAGCCCACACAAGTAGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGTCTTC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA---C-TC
* * *
15612 TCCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACGCCTTC
1 -CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA---C-TC
* * *
15673 TCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGC
1 -CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACTC
* *
15730 CTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCCCAAAGAGCAGGAC-C
1 C----CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAGGACTC
* * *
15789 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACTC
* *
15845 CTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTCCAGTCCTCAAAGAGCGGGA-TGC
1 C----CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACT-C
* * *
15904 CTTTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC-A
1 C----CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACTC
* *
15963 CCTCTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGA-TG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAGGACTC
* * ** *
16018 CCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCACAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA
16071 TACACTTTAT
Statistics
Matches: 600, Mismatches: 61, Indels: 67
0.82 0.08 0.09
Matches are distributed among these distances:
54 44 0.07
55 187 0.31
56 9 0.01
57 2 0.00
58 4 0.01
59 56 0.09
60 136 0.23
61 162 0.27
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (56 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACTC
Found at i:15642 original size:237 final size:236
Alignment explanation
Indices: 15322--16070 Score: 1096
Period size: 237 Copynumber: 3.2 Consensus size: 236
15312 GATGCCTTTT
* * *
15322 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAATCCTCAAAGAGCAGGA-----CACCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTTCTCCTTT
*
15381 TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCAGACACCTTCTCCTTTTAAA
66 TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCAGACGCCTTCTCCTTTTAAA
*
15446 GCCCACACAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGCGGGACGCATTTTCTTTCAAAGCCCA
131 GCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCATTTTCTTTCAAAGCCCA
15511 CACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGACC
196 CACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGACC
* **
15552 CCTTTTAAAGCCCACACAAGTAGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGTCTTCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACG-CTTCTCCTT
* *
15617 TTAAAGCCCACATAAGTTGGTGGCACTTCCCAGTCCTCAAAGAG-TAGGACGCCTTCTCCTTTTA
65 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCA-GACGCCTTCTCCTTTTA
*
15681 AAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCCTTTTCTTTCAAAGCC
129 AAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCATTTTCTTTCAAAGCC
15746 CACACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGACC
194 CACACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGACC
* *
15789 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCCTT-TTCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACG-CTTCTCCTT
* ** * * *
15853 TTAAAGCCCACACAAGTTGGTGGCACCT-CCAGTCCTCAAAGAGCGGGATGCCTT-TTCTTTCAA
65 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCAGACGCCTTCTCCTTTTAA
* **
15916 AGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--CA-CCTC-TT-AAAGCCC
130 AGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCATTTTCTTTCAAAGCCC
* * **
15976 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATG
195 ACACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGACC
* * * *
16018 CCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCACAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
16071 TACACTTTAT
Statistics
Matches: 473, Mismatches: 37, Indels: 19
0.89 0.07 0.04
Matches are distributed among these distances:
229 93 0.20
230 31 0.07
231 20 0.04
232 1 0.00
234 51 0.11
235 22 0.05
236 31 0.07
237 224 0.47
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (236 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTTCTCCTTT
TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCCAGACGCCTTCTCCTTTTAAA
GCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACGCATTTTCTTTCAAAGCCCA
CACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGACC
Found at i:16889 original size:19 final size:18
Alignment explanation
Indices: 16863--16963 Score: 78
Period size: 19 Copynumber: 6.0 Consensus size: 18
16853 AATTTCAGCG
16863 ATTTGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
16881 ATGTTGTATTGATAC---A
1 AT-TTGTATCGATACATAA
16897 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
16913 ATGTTGTATTGATAC---A
1 AT-TTGTATCGATACATAA
16929 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
16945 GTATTGTATCGATACATAA
1 AT-TTGTATCGATACATAA
16964 TTAGCTACTG
Statistics
Matches: 65, Mismatches: 5, Indels: 25
0.68 0.05 0.26
Matches are distributed among these distances:
13 20 0.31
16 7 0.11
18 2 0.03
19 36 0.55
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (18 bp):
ATTTGTATCGATACATAA
Found at i:16907 original size:32 final size:32
Alignment explanation
Indices: 16866--16960 Score: 163
Period size: 32 Copynumber: 3.0 Consensus size: 32
16856 TTCAGCGATT
16866 TGTATCGATACATAAATGTTGTATTGATACAA
1 TGTATCGATACATAAATGTTGTATTGATACAA
16898 TGTATCGATACATAAATGTTGTATTGATACAA
1 TGTATCGATACATAAATGTTGTATTGATACAA
* * *
16930 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAATGTTGTATTGATACA
16961 TAATTAGCTA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAATGTTGTATTGATACAA
Found at i:17027 original size:21 final size:21
Alignment explanation
Indices: 16983--17037 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
16973 GCCAAGGGAA
*
16983 TGTATCGATACAT-TTTTCTG
1 TGTATCGATACATCTATTCTG
*
17003 TGTATCGATACATCTATTCTT
1 TGTATCGATACATCTATTCTG
17024 TGTATCGATACATC
1 TGTATCGATACATC
17038 AAGGAAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 13 0.41
21 19 0.59
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTATTCTG
Found at i:19610 original size:51 final size:51
Alignment explanation
Indices: 19555--19769 Score: 250
Period size: 52 Copynumber: 4.2 Consensus size: 51
19545 TGAGGGGAAG
* * * * *
19555 CTCCAACCCCGGCTTTATTTCCAAAATATTGATTTTTCATAATCGGGGATA
1 CTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATA
* *
19606 CTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCGGGGATA
1 CTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTT-CACAATCGGGGATA
* * **
19658 CTCCAACCCCGGTTTTATTTTCAAAACACTAATTTTCCTTTAATCGGGGATA
1 CTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTTC-ACAATCGGGGATA
* * * * * *
19710 CTCCAACTCTGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATA
1 CTCCAACCCCGGTTTTATTTCC-AAAACACTAATTTTTCACAATCGGGGATA
19762 CTCCAACC
1 CTCCAACC
19770 TTGTTATTTC
Statistics
Matches: 137, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
51 32 0.23
52 92 0.67
53 13 0.09
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.33
Consensus pattern (51 bp):
CTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATA
Found at i:19788 original size:28 final size:30
Alignment explanation
Indices: 19752--19828 Score: 99
Period size: 28 Copynumber: 2.7 Consensus size: 30
19742 ATTTTTCACA
* **
19752 ATCGAGGATACTCCAACCTTGTTA-TTTC-
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
19780 ATCGGGGATACTCCAACCCCGTTACTTTCG
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
19810 A--GGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
19829 GCTTTATTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 39 0.89
29 4 0.09
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCGTTACTTTCG
Found at i:19846 original size:263 final size:263
Alignment explanation
Indices: 19379--19879 Score: 812
Period size: 263 Copynumber: 1.9 Consensus size: 263
19369 TTCTCAATTC
* * *
19379 TCCACAATCGGGGATATTTCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
*
19444 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCT
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCT
*
19509 CGTTAATCATCGGGGATACTCCAACCCTGTTATTTCTGAGGGGAAGCTCCAACCCCGGCTTTATT
131 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGAAGCTCCAACCCCGGCTTTATT
* *
19574 TCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
196 CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
19639 TTT
261 TTT
* *
19642 TCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACTAATTTTCCTTTAATCGGGG
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGG
* *
19707 ATACTCCAACTCTGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAACC
65 ATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACC
* *
19770 TTGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTC-GAGGGGATA-CTCCAACCCCGGCTT
130 TCGTTA-ATCATCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGA-AGCTCCAACCCCGGCTT
*
19833 TATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCG
192 TATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCG
19880 TTATTTTCGA
Statistics
Matches: 220, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
262 28 0.13
263 152 0.69
264 40 0.18
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (263 bp):
TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCT
CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGAAGCTCCAACCCCGGCTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
TTT
Found at i:19961 original size:78 final size:78
Alignment explanation
Indices: 19782--20003 Score: 250
Period size: 78 Copynumber: 2.8 Consensus size: 78
19772 GTTATTTCAT
* *
19782 CGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-GATTTATTCCCAAAATAT
* * *
19847 TGATTTCTCATAAT
65 CGATTTCTCACAAC
* * * ** *
19861 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTC-TAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAAT-AT
19925 CGATTTCTCACAAC
65 CGATTTCTCACAAC
* * * * *
19939 CGGGGATACTTCAGCCCCGTTATTTTCAAGGGGACACTCCAACCCCGTTATTA-TCTCCAAAATA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGAT-TTATTC-CCAAAATA
20003 T
64 T
20004 TAAATTTCTC
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
77 3 0.03
78 63 0.54
79 48 0.41
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (78 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAATATC
GATTTCTCACAAC
Found at i:21913 original size:68 final size:67
Alignment explanation
Indices: 21826--21963 Score: 195
Period size: 68 Copynumber: 2.0 Consensus size: 67
21816 AACATACAAA
* * * * * * *
21826 CAAGTGCACCAAGTCACTTATGCTAATAAACGATCTTAGAGGTTTGATCGACATCTCAGTATAGA
1 CAAGTGCACCAAGTCACTTATGCTAATAAACGACCTTAAAGGTCTAATCAAAATCTCAGCATAGA
21891 AG
66 AG
*
21893 CAAGTGACACCAAGTCACTTATGCTAATAAACGACCTTAAAGGTCTAATCAAAATCTCAGCATAT
1 CAAGTG-CACCAAGTCACTTATGCTAATAAACGACCTTAAAGGTCTAATCAAAATCTCAGCATAG
21958 AAG
65 AAG
21961 CAA
1 CAA
21964 CTCATTTATG
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
67 6 0.10
68 56 0.90
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (67 bp):
CAAGTGCACCAAGTCACTTATGCTAATAAACGACCTTAAAGGTCTAATCAAAATCTCAGCATAGA
AG
Found at i:22393 original size:75 final size:75
Alignment explanation
Indices: 22265--22409 Score: 263
Period size: 75 Copynumber: 1.9 Consensus size: 75
22255 CACCGTCAGC
*
22265 CCGTCAGCTTTGACTCGAGAGACTTCCTTTATCAACCATCTGCCCATCGACTTAGACTCAAGAGA
1 CCGTCAGCTTTGACTCGAGAGACTTCCTTTATCAACCATCTGCCCATCAACTTAGACTCAAGAGA
22330 CTTTTATCCA
66 CTTTTATCCA
* *
22340 CCGTCAGCTTTGACTCGGGAGACTTCCTTTATCAACCATCTGCCCATCAACTTAGACTCAGGAGA
1 CCGTCAGCTTTGACTCGAGAGACTTCCTTTATCAACCATCTGCCCATCAACTTAGACTCAAGAGA
22405 CTTTT
66 CTTTT
22410 TCATTATTTG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (75 bp):
CCGTCAGCTTTGACTCGAGAGACTTCCTTTATCAACCATCTGCCCATCAACTTAGACTCAAGAGA
CTTTTATCCA
Found at i:22701 original size:43 final size:43
Alignment explanation
Indices: 22631--22960 Score: 165
Period size: 42 Copynumber: 7.8 Consensus size: 43
22621 TCATTATTCG
* * * * * *
22631 TCTGCCCGTCAGCTCAGTCTCGGGAGACTTCTTTTATCAATTG
1 TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTTTTATCAATTA
* *
22674 TCTGCCCGTCGGCTTAGAATTGAGAGACTTC-TTTAT-ATTTCA
1 TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTTTTATCAATT-A
* * * * *
22716 TCTGCCTGTCAGTTTAGACTTG-GAAGACTTC-TTTATCCATCA
1 TCTGCCCGTCGGCTTAGACTTGAG-AGACTTCTTTTATCAATTA
* * *
22758 TCTGCCAGTCGACTTAGACTTAAGAGACTTCTTTTATCAACTT-
1 TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTTTTATCAA-TTA
* * * * *
22801 TTTTCCCGTCGGCTTAGGCTCGAGAGACTTC-TTCATC-ATTCA
1 TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTTTTATCAATT-A
* *** * * ** * * *
22843 TCTGCTCGTTAACTCAGTCCCGAGAGACTTCCTTTATCAACTG
1 TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTTTTATCAATTA
* * * ** *
22886 CCTACCCGTCGGCTTAGACTT-AGAAGACTT-TTTCATCTTTTG
1 TCTGCCCGTCGGCTTAGACTTGAG-AGACTTCTTTTATCAATTA
* * ** *
22928 TCTGCCCGTTGACTTAGACCCGGGAGACTTCTT
1 TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTT
22961 CATCCTCCGT
Statistics
Matches: 210, Mismatches: 64, Indels: 26
0.70 0.21 0.09
Matches are distributed among these distances:
40 2 0.01
41 5 0.02
42 117 0.56
43 83 0.40
44 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (43 bp):
TCTGCCCGTCGGCTTAGACTTGAGAGACTTCTTTTATCAATTA
Found at i:22701 original size:85 final size:84
Alignment explanation
Indices: 22612--22787 Score: 183
Period size: 85 Copynumber: 2.1 Consensus size: 84
22602 TTAGAGCCAG
* * * **
22612 GAGACTTATTCAT-TATTCGTCTGCCCGTCAGCTCAGTCTCGGGAGACTTCTTTTATCAATTGTC
1 GAGACTTATTCATAT-TTCATCTGCCCGTCAGCTCAGACTCGGAAGACTTC-TTTATCAATCATC
* * *
22676 TGCCCGTCGGCTTAGAATTGA
64 TGCCAGTCGACTTAGAATTAA
* * * * * * *
22697 GAGACTTCTTTATATTTCATCTGCCTGTCAGTTTAGACTTGGAAGACTTCTTTATCCATCATCTG
1 GAGACTTATTCATATTTCATCTGCCCGTCAGCTCAGACTCGGAAGACTTCTTTATCAATCATCTG
*
22762 CCAGTCGACTTAGACTTAA
66 CCAGTCGACTTAGAATTAA
22781 GAGACTT
1 GAGACTT
22788 CTTTTATCAA
Statistics
Matches: 74, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
84 34 0.46
85 39 0.53
86 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (84 bp):
GAGACTTATTCATATTTCATCTGCCCGTCAGCTCAGACTCGGAAGACTTCTTTATCAATCATCTG
CCAGTCGACTTAGAATTAA
Found at i:22869 original size:85 final size:85
Alignment explanation
Indices: 22780--22960 Score: 202
Period size: 85 Copynumber: 2.1 Consensus size: 85
22770 CTTAGACTTA
*** * *
22780 AGAGACTTCTTTTATCAACTTTTTTCCCGTCGGCTTAGGCTCGAG-AGACTTCTTCATCATTCAT
1 AGAGACTTCTTTTATCAACTGCCTACCCGTCGGCTTAGACT-GAGAAGACTTCTTCATCATTCAT
* *
22844 CTGCTCGTTAACTCAGTCCCG
65 CTGCCCGTTAACTCAGACCCG
* * * * **
22865 AGAGACTTCCTTTATCAACTGCCTACCCGTCGGCTTAGACTTAGAAGACTTTTTCATCTTTTGTC
1 AGAGACTTCTTTTATCAACTGCCTACCCGTCGGCTTAGACTGAGAAGACTTCTTCATCATTCATC
* *
22930 TGCCCGTTGACTTAGACCCG
66 TGCCCGTTAACTCAGACCCG
*
22950 GGAGACTTCTT
1 AGAGACTTCTT
22961 CATCCTCCGT
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
84 2 0.03
85 76 0.97
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (85 bp):
AGAGACTTCTTTTATCAACTGCCTACCCGTCGGCTTAGACTGAGAAGACTTCTTCATCATTCATC
TGCCCGTTAACTCAGACCCG
Found at i:22958 original size:212 final size:212
Alignment explanation
Indices: 22358--22965 Score: 509
Period size: 212 Copynumber: 2.9 Consensus size: 212
22348 TTTGACTCGG
* * * ** * * **
22358 GAGACTTCCTTTATCAACCATCTGCCCATCAACTTAGA-CTCAGGAGACTTTTTCATTATTTGTC
1 GAGACTTCCTTTATCAATCACCTGTCCATCGGCTTAGAGC-CAGGAGACTTATTCATCATTCATC
* *** ** * * * *
22422 TGCCCATTGGCTCAGTCTTGGGAGACTTCTTTTATCAACTGTCTACCCGTTGGCTTA-ACTCAGG
65 TGCCCGTCAACTCAGTCCCGAGAGACTTCTTTTATCAACTGTCTACCCGTCGGCTTAGACTTAGA
* * * * ** *
22486 AGACTTCTTCATCTTTTATTTACCCATCTG-CTTAGACCCAAGAGACCTCTTCATCCATCATCTT
130 AGACTTTTTCATCTTTTATCTGCCCGT-TGACTTAGACCCGGGAGACTTCTTCATCCATCATCTT
* * *
22550 TCCATCAACTTTGATTCGA
194 GCCATCAACTTAGATTCAA
* * *
22569 GAGACTTCCTTTATCAATCACCTGTCTATCGGCTTAGAGCCAGGAGACTTATTCATTATTCGTCT
1 GAGACTTCCTTTATCAATCACCTGTCCATCGGCTTAGAGCCAGGAGACTTATTCATCATTCATCT
* * * * * *
22634 GCCCGTCAGCTCAGTCTCGGGAGACTTCTTTTATCAATTGTCTGCCCGTCGGCTTAGAATT-GAG
66 GCCCGTCAACTCAGTCCCGAGAGACTTCTTTTATCAACTGTCTACCCGTCGGCTTAGACTTAGA-
* * * * * ** * *
22698 AGACTTCTTT-ATATTTCATCTGCCTG-TCAGTTTAGACTTGGAAGACTTCTTTATCCATCATC-
130 AGACTT-TTTCATCTTTTATCTGCCCGTTGA-CTTAGACCCGGGAGACTTCTTCATCCATCATCT
*
22760 TGCCAGTCGACTTAGACTT-AA
193 TGCCA-TCAACTTAGA-TTCAA
* *** * * *
22781 GAGACTTCTTTTATCAA-CTTTTTTCCCGTCGGCTTAG-GCTC-GAGAGACTTCTTCATCATTCA
1 GAGACTTCCTTTATCAATCACCTGT-CCATCGGCTTAGAGC-CAG-GAGACTTATTCATCATTCA
* * * *
22843 TCTGCTCGTTAACTCAGTCCCGAGAGACTTCCTTTATCAACTGCCTACCCGTCGGCTTAGACTTA
63 TCTGCCCGTCAACTCAGTCCCGAGAGACTTCTTTTATCAACTGTCTACCCGTCGGCTTAGACTTA
*
22908 GAAGACTTTTTCATCTTTTGTCTGCCCGTTGACTTAGACCCGGGAGACTTCTTCATCC
128 GAAGACTTTTTCATCTTTTATCTGCCCGTTGACTTAGACCCGGGAGACTTCTTCATCC
22966 TCCGTCTGCC
Statistics
Matches: 315, Mismatches: 68, Indels: 27
0.77 0.17 0.07
Matches are distributed among these distances:
210 1 0.00
211 118 0.37
212 188 0.60
213 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (212 bp):
GAGACTTCCTTTATCAATCACCTGTCCATCGGCTTAGAGCCAGGAGACTTATTCATCATTCATCT
GCCCGTCAACTCAGTCCCGAGAGACTTCTTTTATCAACTGTCTACCCGTCGGCTTAGACTTAGAA
GACTTTTTCATCTTTTATCTGCCCGTTGACTTAGACCCGGGAGACTTCTTCATCCATCATCTTGC
CATCAACTTAGATTCAA
Found at i:23357 original size:168 final size:168
Alignment explanation
Indices: 23053--23817 Score: 764
Period size: 168 Copynumber: 4.6 Consensus size: 168
23043 CCTTCATTCA
* * * *
23053 TCATTCACCTGTCGGCTTGGTCCAAGGTATTTTTTTTTTATCTTTTGTTGACTTGTCGGTCCAAT
1 TCATTCACCTGTCGGCTTGGTCCCAGGTA-CTTCTTTCTATCTTTTGTTGACTTGTCGGTCCAAT
* * * * *
23118 CCCAATCAACTTCTTTAT-TTTTGTTTA-CC-TGCCAGCCCAGTCCTCG-GTAAATTTTTTATCC
65 CCTAGTCAACTTCTTTATCCTTTGTTTACCCAT-CGA-CCCAGT-CTCGAGTAAATTCTTTATCC
*
23179 TTTGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCT
127 CTTGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCT
* ** **
23221 TCATTCACTTGTTAGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTTAGTCCAATC
1 TCATTCACCTGTCGGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTCGGTCCAATC
* * * * * * *
23286 CTAGTTAACTTTTTTATCCTTTATTTACCCA-CAGACCTAGTC-CTAAGTAAATCCTTTACCCCT
66 CTAGTCAACTTCTTTATCCTTTGTTTACCCATC-GACCCAGTCTC-GAGTAAATTCTTTATCCCT
** *
23349 TGTTGACTTGTCAATTTAATCCTGGTTAACTTTTTATCCT
129 TGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCT
* ** * *
23389 TCATTCACCTATCATCTTGGTCCCAAGTACTTCTTTCTATCTTTTGTTAACTTGTCGGTCCAATC
1 TCATTCACCTGTCGGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTCGGTCCAATC
** * * * *
23454 CGGGTCAACTT-TCTTATCTTTTGTTCACCCATCGACCTAGTCTCGAGTATA-TCTTTAAT-CCT
66 CTAGTCAACTTCT-TTATCCTTTGTTTACCCATCGACCCAGTCTCGAGTAAATTCTTT-ATCCCT
* ** * *
23516 TCATTGACTTGTCGGTTTAATCCCAGTTAACTTGTTATCCT
129 T-GTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCT
* * * * * *
23557 TCATTCACCTGTCGGCTTGGTCCTAGGTACTTCCTTCTATCTTTTGTTAACTTATCGATCTAAT-
1 TCATTCACCTGTCGGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTCGGTCCAATC
* * * * *
23621 CTCGGTCAACTTCTTTGTCC-TTGTTTACCCATCGACCCGGTTTCGAGTAAATTCTTTATCCCTC
66 CT-AGTCAACTTCTTTATCCTTTGTTTACCCATCGACCCAGTCTCGAGTAAATTCTTTATCCCTT
*
23685 GTTGACTTGTCGATTTAATCCCAGTCAACTTTTTATCCT
130 GTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCT
* * * * * * * *
23724 TTATTTACCTATCGGCTTGATCTCAAGTACTTCTTTTTATATTTTGTTGACTTGTCGGTCCAAT-
1 TCATTCACCTGTCGGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTCGGTCCAATC
* *
23788 TTCGATCAACCTT-TTTATCCTTTGTTTACC
66 CTAG-TCAA-CTTCTTTATCCTTTGTTTACC
23818 TATCTGCTTA
Statistics
Matches: 491, Mismatches: 88, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
166 2 0.00
167 179 0.36
168 304 0.62
169 6 0.01
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.44
Consensus pattern (168 bp):
TCATTCACCTGTCGGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTCGGTCCAATC
CTAGTCAACTTCTTTATCCTTTGTTTACCCATCGACCCAGTCTCGAGTAAATTCTTTATCCCTTG
TTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCT
Found at i:23621 original size:84 final size:84
Alignment explanation
Indices: 23174--23780 Score: 297
Period size: 84 Copynumber: 7.2 Consensus size: 84
23164 GTAAATTTTT
* * * * * *
23174 TATCCTTTGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCTTCATTCACTTGT-TAGCT
1 TATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTTTTTATCCTTCATTCACCTATCGA-CT
* *
23238 TGGTCCCAGGTACTTCTTTC
65 TGGTCCTAGGTACTTCCTTC
* * * * * * *
23258 TATCTTTTGTTGACTTGT-TAGTCCAATCCTAGTTAACTTTTTTATCCTTTATTTACCCA-CAGA
1 TATCCTTTGTTGACTTGTCGA-TCTAATCCCAGTTAAC-TTTTTATCCTTCATTCACCTATC-GA
* * * **
23321 CCTAGTCCTAAGTAAATCCTT-
63 CTTGGTCCTAGGTACTTCCTTC
* * * * **
23342 TACCCCTTGTTGACTTGTCAATTTAATCCTGGTTAACTTTTTATCCTTCATTCACCTATC-ATCT
1 TATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTTTTTATCCTTCATTCACCTATCGA-CT
* * *
23406 TGGTCCCAAGTACTTCTTTC
65 TGGTCCTAGGTACTTCCTTC
* * * * ** * * ** * *
23426 TATCTTTTGTTAACTTGTCGGTCCAATCCGGGTCAACTTTCTTATCTTTTGTTCACCCATCGACC
1 TATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTTT-TTATCCTTCATTCACCTATCGACT
* *
23491 TAGT-CTCGAGTA-TAT-CTT-
65 TGGTCCTAG-GTACT-TCCTTC
** * * * * *
23509 TAATCCTTCATTGACTTGTCGGTTTAATCCCAGTTAACTTGTTATCCTTCATTCACCTGTCGGCT
1 T-ATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTTTTTATCCTTCATTCACCTATCGACT
23574 TGGTCCTAGGTACTTCCTTC
65 TGGTCCTAGGTACTTCCTTC
* * * * * * * * * * *
23594 TATCTTTTGTTAACTTATCGATCTAATCTCGGTCAACTTCTTTGTCCTT-GTTTACCCATCGACC
1 TATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTT-TTTATCCTTCATTCACCTATCGACT
* * * *
23658 CGGT-TTCGAGTAAATT-CTT-
65 TGGTCCTAG-GT-ACTTCCTTC
* * * * * * *
23677 TATCCCTCGTTGACTTGTCGATTTAATCCCAGTCAACTTTTTATCCTTTATTTACCTATCGGCTT
1 TATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTTTTTATCCTTCATTCACCTATCGACTT
* * * *
23742 GAT-CTCAAGTACTTCTTTT
66 GGTCCT-AGGTACTTCCTTC
**
23761 TATATTTTGTTGACTTGTCG
1 TATCCTTTGTTGACTTGTCG
23781 GTCCAATTTC
Statistics
Matches: 379, Mismatches: 120, Indels: 48
0.69 0.22 0.09
Matches are distributed among these distances:
82 12 0.03
83 110 0.29
84 189 0.50
85 66 0.17
86 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (84 bp):
TATCCTTTGTTGACTTGTCGATCTAATCCCAGTTAACTTTTTATCCTTCATTCACCTATCGACTT
GGTCCTAGGTACTTCCTTC
Found at i:23849 original size:335 final size:333
Alignment explanation
Indices: 23087--23849 Score: 829
Period size: 335 Copynumber: 2.3 Consensus size: 333
23077 AGGTATTTTT
* * **
23087 TTTTTATCTTTTGTTGACTTGTCGGTCCAATCCCAATCAACTTCTTTAT-TTTTGTTTACCTGCC
1 TTTTTATCTTTTGTTGACTTGTCGGTCCAATTCCGATCAACTT-TTTATCTTTTGTTTACCTATC
* ** * * ** *
23151 AGCCCAGTCCTCGGTAAATTTTTTATCCTTTGTTGACTTGTCAATTTAATCCCAGTCAACTTTTT
65 -GCCTAGTCC-AAGTAAATCTTTAATCCTTCATTGACTTGTCAATTTAATCCCAGTCAACTTGTT
* * * * * *
23216 ATCCTTCATTCACTTGTTAGCTTGGTCCCAGGTACTTCTTTCTATCTTTTGTTGACTTGTTAGTC
128 ATCCTTCATTCACCTGTCAGCTTGGTCCCAGGTACTTCCTTCTATCTTTTGTTAACTTATGAGTC
* * *
23281 CAATCCTAGTTAACTTTTTTATCCTTTATTTACCCACAGACCTAGTCCTAAGTAAATCCTTTACC
193 CAATCCTAGTCAACTTCTTTATCCTTTATTTACCCACAGACCCAGTCCTAAGTAAATCCTTTACC
* ** * * *
23346 CCTTGTTGACTTGTCAATTTAATCCTGGTTAACTTTTTATCCTTCATTCACCTATCATCTTGGTC
258 CCTCGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCTTCATTCACCTATCAGCTTGATC
23411 CCAAGTACTTC
323 CCAAGTACTTC
* * * * *
23422 TTTCTATCTTTTGTTAACTTGTCGGTCCAA-TCCGGGTCAACTTTCTTATCTTTTGTTCACCCAT
1 TTTTTATCTTTTGTTGACTTGTCGGTCCAATTCC-GATCAACTTT-TTATCTTTTGTTTACCTAT
* * ** *
23486 CGACCTAGTCTCGAGTATATCTTTAATCCTTCATTGACTTGTCGGTTTAATCCCAGTTAACTTGT
64 CG-CCTAGTC-CAAGTAAATCTTTAATCCTTCATTGACTTGTCAATTTAATCCCAGTCAACTTGT
* *
23551 TATCCTTCATTCACCTGTCGGCTTGGTCCTAGGTACTTCCTTCTATCTTTTGTTAACTTATCGA-
127 TATCCTTCATTCACCTGTCAGCTTGGTCCCAGGTACTTCCTTCTATCTTTTGTTAACTTAT-GAG
* * * * * * * *
23615 TCTAAT-CTCGGTCAACTTCTTTGTCC-TTGTTTACCCATC-GACCCGGT-TTCGAGTAAATTCT
191 TCCAATCCT-AGTCAACTTCTTTATCCTTTATTTACCCA-CAGACCCAGTCCT-AAGTAAATCCT
* * * * *
23676 TTATCCCTCGTTGACTTGTCGATTTAATCCCAGTCAACTTTTTATCCTTTATTTACCTATCGGCT
253 TTACCCCTCGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCTTCATTCACCTATCAGCT
*
23741 TGATCTCAAGTACTTC
318 TGATCCCAAGTACTTC
* * *
23757 TTTTTATATTTTGTTGACTTGTCGGTCCAATTTCGATCAACCTTTTTATCCTTTGTTTACCTATC
1 TTTTTATCTTTTGTTGACTTGTCGGTCCAATTCCGATCAA-CTTTTTATCTTTTGTTTACCTATC
* *
23822 TGCTTAGTTCCAAGTAAATCATTAATCC
65 -GCCTAG-TCCAAGTAAATCTTTAATCC
23850 ACTGTTGACT
Statistics
Matches: 351, Mismatches: 64, Indels: 26
0.80 0.15 0.06
Matches are distributed among these distances:
334 4 0.01
335 204 0.58
336 141 0.40
337 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (333 bp):
TTTTTATCTTTTGTTGACTTGTCGGTCCAATTCCGATCAACTTTTTATCTTTTGTTTACCTATCG
CCTAGTCCAAGTAAATCTTTAATCCTTCATTGACTTGTCAATTTAATCCCAGTCAACTTGTTATC
CTTCATTCACCTGTCAGCTTGGTCCCAGGTACTTCCTTCTATCTTTTGTTAACTTATGAGTCCAA
TCCTAGTCAACTTCTTTATCCTTTATTTACCCACAGACCCAGTCCTAAGTAAATCCTTTACCCCT
CGTTGACTTGTCAATTTAATCCCAGTCAACTTTTTATCCTTCATTCACCTATCAGCTTGATCCCA
AGTACTTC
Found at i:25839 original size:14 final size:15
Alignment explanation
Indices: 25811--25855 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
25801 TATCTAATCA
25811 AAAAATGACAAAAAA-
1 AAAAATGA-AAAAAAT
*
25826 ATGAAATGAAAAAAAT
1 A-AAAATGAAAAAAAT
25842 AAAAATGAAAAAAA
1 AAAAATGAAAAAAA
25856 AGGAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.78, C:0.02, G:0.09, T:0.11
Consensus pattern (15 bp):
AAAAATGAAAAAAAT
Found at i:25840 original size:15 final size:15
Alignment explanation
Indices: 25813--25861 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
25803 TCTAATCAAA
25813 AAATGACAAAAAAATG
1 AAATGA-AAAAAAATG
*
25829 AAATG-AAAAAAATAA
1 AAATGAAAAAAAAT-G
*
25844 AAATGAAAAAAAAGG
1 AAATGAAAAAAAATG
25859 AAA
1 AAA
25862 AAATGCAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 8 0.29
15 8 0.29
16 12 0.43
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (15 bp):
AAATGAAAAAAAATG
Found at i:25862 original size:16 final size:15
Alignment explanation
Indices: 25812--25862 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
25802 ATCTAATCAA
25812 AAAATGACAAAAAAATG
1 AAAATGA-AAAAAAA-G
25829 -AAATGAAAAAAATA-
1 AAAATGAAAAAAA-AG
25843 AAAATGAAAAAAAAGG
1 AAAATGAAAAAAAA-G
25859 AAAA
1 AAAA
25863 AATGCAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
14 1 0.03
15 18 0.60
16 11 0.37
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (15 bp):
AAAATGAAAAAAAAG
Found at i:29176 original size:156 final size:151
Alignment explanation
Indices: 28240--29245 Score: 692
Period size: 156 Copynumber: 6.5 Consensus size: 151
28230 TCACTTTAAA
* * * *
28240 ATCTTTTTGAAGTCCTTTAAGGG-CA-TCGGG-TACTTCTACATCGAAGATATCCTCTATGGGTA
1 ATCTTTTT-AAGTCCTTT-AGGGTTACT-GGGATACTTTTACGTCGAAGGTATCC-CTA-GGGTA
* * * * * * *
28302 TTTTCATGATTTTTCAAAACCGACTCCTAAGTTGTCACCGGGTTCGCTTTTATG-CTGAAGGTAG
61 TTTTCGTAATTTTTTAAAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTC-GAAGGT-G
* * * *
28366 GTC-TTTAGGATAGGTTCACCCTTTTTAT
124 GGCATTTAGGATAGGTTCATCC-ATTTCT
* * * * * *
28394 AGTCCTTTTAAAGTCCTTTAGGGATATTGAGATACTTTCACGTCAAAGGTATTCCCTAAGGGTAT
1 A-T-CTTTTTAAGTCCTTTAGGGTTACTGGGATACTTTTACGTCGAAGGTA-TCCCT-AGGGTAT
* * * * * * * *
28459 TTTCATAAATTTTTAAAATCGAGTCCTAGGTTATCACCGGGTCTGCTTTCATGCCGAAGGTGGGC
62 TTTCGTAATTTTTTAAAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTCGAAGGTGGGC
* * * *
28524 ATTTAGGATAAGTTCA-CCCTCTAT
127 ATTTAGGATAGGTTCATCCATTTCT
* * * * *
28548 AATTCTTTTTAAGTCCTTTAGGGGTA-TCGGG-TACTTCTATGTTGAAGGTATCCCTTAGGGACA
1 -A-TCTTTTTAAGTCCTTTAGGGTTACT-GGGATACTTTTACGTCGAAGGTATCCC-TAGGG-TA
* ** * * ** * ** * * * *
28611 TTTTCATAATTTTTTAAAATTGAGTCTTAACTTGTAACATGGTCCGATTTTATGTCGAAGATAGA
61 TTTTCGTAATTTTTTAAAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTCGAAGGTGGG
* * **
28676 TATATAGGATAGGTTCATCCCATTTAA
126 CATTTAGGATAGGTTCAT-CCATTTCT
* *
28703 ACCTTTTTAAGT-CTATTAAGGG-TACAGGGATACTTTCT-CGTCGAAGGTATCCTCTAGGGGTA
1 ATCTTTTTAAGTCCT-TT-AGGGTTACTGGGATACTTT-TACGTCGAAGGTATCC-CTA-GGGTA
* * * * * * * * *
28765 TTTTCGTAATTTCTTAGAACCAACCCCTAGGTTATCACTGAGTCCTCTTTTTTGTCGAAGGTGGG
61 TTTTCGTAATTTTTTAAAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTCGAAGGTGGG
*
28830 CATTTAGGATAGGTTCATCCTATCTCT
126 CATTTAGGATAGGTTCATCC-ATTTCT
* ** * *
28857 AGTCTTTTTAAGTCCTTTAGGGTTGCCAGGATACTTTTTCGTCGAAGGTATACCTATAAGGGTAT
1 A-TCTTTTTAAGTCCTTTAGGGTTACTGGGATACTTTTACGTCGAAGGTAT-CC-CT-AGGGTAT
* * * *
28922 TTTCGTAATTTTTTAAAACCAATTCCTAGGTTGTCACCGGGTCTGCTTTTATG-CTGAAGGTGAG
62 TTTCGTAATTTTTTAAAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTC-GAAGGTGGG
*
28986 CATTTAGGATAGGTTCATCCCTTCTCT
126 CATTTAGGATAGGTTCATCCATT-TCT
* *
29013 AGTCTTTTTAAATCCTTTAGGGTTACTGGGATACTTTTACGTCGAAGGTATACCCGTAGGGACAT
1 A-TCTTTTTAAGTCCTTTAGGGTTACTGGGATACTTTTACGTCGAAGGTAT-CCC-TAGGG-TAT
* * **
29078 TTTTGTAATTTTTTAGAAA-CAACTCTTAGGTTGTCACCAAGTCCGCTTTTATGTCGAAGGTGGG
62 TTTCGTAATTTTTTA-AAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTCGAAGGTGGG
*
29142 CATTTAGGATAGGTCCATGCCATTTCT
126 CATTTAGGATAGGTTCAT-CCATTTCT
* * ** * ** **
29169 ATCCTTTTTCAGT-CTCTTAGGGGTA-TCAGATACTTTTATGTTAAAGGTATTCCCTATGGGCGT
1 AT-CTTTTTAAGTCCT-TTAGGGTTACTGGGATACTTTTACGTCGAAGGTA-TCCCTA-GGGTAT
*
29232 TTTCATAATTTTTT
62 TTTCGTAATTTTTT
29246 TTGAACTTAG
Statistics
Matches: 680, Mismatches: 132, Indels: 80
0.76 0.15 0.09
Matches are distributed among these distances:
152 10 0.01
153 99 0.15
154 140 0.21
155 99 0.15
156 318 0.47
157 14 0.02
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (151 bp):
ATCTTTTTAAGTCCTTTAGGGTTACTGGGATACTTTTACGTCGAAGGTATCCCTAGGGTATTTTC
GTAATTTTTTAAAATCAACTCCTAGGTTGTCACCGGGTCCGCTTTTATGTCGAAGGTGGGCATTT
AGGATAGGTTCATCCATTTCT
Found at i:30547 original size:23 final size:23
Alignment explanation
Indices: 30494--30548 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
30484 ATAATCCCCA
* *
30494 ATATTTTT-ATTATATATTTTTT
1 ATATTTTTCAATATATATTGTTT
** *
30516 ATAAATTTCAATATATGTTGTTT
1 ATATTTTTCAATATATATTGTTT
30539 ATATTTTTCA
1 ATATTTTTCA
30549 CTAACCCTTG
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (23 bp):
ATATTTTTCAATATATATTGTTT
Found at i:30982 original size:16 final size:16
Alignment explanation
Indices: 30961--30992 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30951 AGTCCATCCT
30961 TAATTTCATTTAGTGG
1 TAATTTCATTTAGTGG
30977 TAATTTCATTTAGTGG
1 TAATTTCATTTAGTGG
30993 ACCTTACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
TAATTTCATTTAGTGG
Found at i:32720 original size:19 final size:19
Alignment explanation
Indices: 32686--32749 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
32676 TTCCTCTAAA
**
32686 AAAAGAAAAAAAAAGAAAG
1 AAAAGAAAAATGAAGAAAG
*
32705 AAAAGAAAAATGAAGAAGG
1 AAAAGAAAAATGAAGAAAG
*
32724 AAAAAACATGAAATGAA-AAAG
1 AAAAGA-A--AAATGAAGAAAG
32745 AAAAG
1 AAAAG
32750 TGCAGATAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 21 0.58
20 1 0.03
21 7 0.19
22 7 0.19
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.05
Consensus pattern (19 bp):
AAAAGAAAAATGAAGAAAG
Found at i:33672 original size:16 final size:17
Alignment explanation
Indices: 33635--33672 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
33625 CTAAAGGCTT
33635 ATAAAAAACAAAAACAA
1 ATAAAAAACAAAAACAA
33652 A-AAAAAACAAAAA-AA
1 ATAAAAAACAAAAACAA
33667 ATAAAA
1 ATAAAA
33673 TACTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 16 0.80
17 1 0.05
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.05
Consensus pattern (17 bp):
ATAAAAAACAAAAACAA
Found at i:39052 original size:20 final size:20
Alignment explanation
Indices: 39027--39080 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
39017 AAAATTCCTA
39027 GATGTATCGATACAAAGATC
1 GATGTATCGATACAAAGATC
39047 GATGTATCGATACAAAGATC
1 GATGTATCGATACAAAGATC
* *
39067 AATGTATTGATACA
1 GATGTATCGATACA
39081 TTGAATAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.28
Consensus pattern (20 bp):
GATGTATCGATACAAAGATC
Found at i:45073 original size:79 final size:78
Alignment explanation
Indices: 44980--45244 Score: 273
Period size: 79 Copynumber: 3.3 Consensus size: 78
44970 ACATCCTTGT
* * * *
44980 TGAAAAATTTAATATTTTGGAGATAAAAAT-GGGGTTGGAGTATCCCCTCGAAAATAATTA-GGT
1 TGAAAAA-TCAATATTTTAGAAAT-AAAATCGGGGTTAGAGTATCCCCTC-AAAATAA-TAGGGT
45043 TGGAGTATCCCCAATGA
62 TGGAGTATCCCCAATGA
*
45060 TGAAAAATCAATATTTTAGAAATAAAATCGGCGTTAGAGTATCCCCTCAGAAATAATAGGGTTGG
1 TGAAAAATCAATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTCA-AAATAATAGGGTTGG
* *
45125 AGTATCCCCGATTA
65 AGTATCCCCAATGA
* * * * ** *
45139 TGAAATATCAATATTTCAAAAATAAAATCGGGGTTAAAGTATCCCCTCAAAAATAACGGGGTTAG
1 TGAAAAATCAATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTC-AAAATAATAGGGTTGG
* ** *
45204 ACTATCCCCGTTGG
65 AGTATCCCCAATGA
* **
45218 TAAAAAATCGGTATTTTAGAAATAAAA
1 TGAAAAATCAATATTTTAGAAATAAAA
45245 CATGAATAAA
Statistics
Matches: 156, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 8 0.05
79 140 0.90
80 8 0.05
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (78 bp):
TGAAAAATCAATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTCAAAATAATAGGGTTGGA
GTATCCCCAATGA
Found at i:48215 original size:12 final size:12
Alignment explanation
Indices: 48195--48243 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
48185 ACCATCCAAG
48195 AAAAGCAACAGC
1 AAAAGCAACAGC
*
48207 AAAATCAACAGC
1 AAAAGCAACAGC
*
48219 ATGCAAAGCAGCAGC
1 A---AAAGCAACAGC
48234 AAAAGCAACA
1 AAAAGCAACA
48244 ACAATATGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
12 20 0.67
15 10 0.33
ACGTcount: A:0.55, C:0.24, G:0.16, T:0.04
Consensus pattern (12 bp):
AAAAGCAACAGC
Found at i:49858 original size:156 final size:159
Alignment explanation
Indices: 49638--49934 Score: 431
Period size: 157 Copynumber: 1.9 Consensus size: 159
49628 TAGACAAATT
*
49638 TTTATATTTCAAGGATAGAATGGTCTTTTCCTACCCATTCAAGTGATATTTCAATTATTCTTATG
1 TTTATATTTCAAGGATAAAATGGTCTTTTCCTACCCATTCAAGTGATATTTCAATTATTCTTATG
* *
49703 GTCTTCCGTAAGGGTATAGAAATATTAAAA-AAATTTCGTATCCTTTGG-TTTTTCATCGAATAC
66 GTCTTCCGTAAGGGTATAGAAACATTAAAATAAATTTCGTATCCATTGGTTTTTTC-TCGAATAC
49766 GAAA-TGTAATTTTCAAAATTAGCCACATA
130 GAAATTGTAATTTTCAAAATTAGCCACATA
* * * * *
49795 TTTATATTTTACGGGTAAAATGGTCTTTTTCTACCCA-TCAAGTGATATTTCTATTATTCTTATG
1 TTTATATTTCAAGGATAAAATGGTCTTTTCCTACCCATTCAAGTGATATTTCAATTATTCTTATG
* *** **
49859 GTCTTCTGTAAGGGTATAGAAACATTAAAATTCTTTTCGTATCCATTGGTTTTTTCTCGGGTACG
66 GTCTTCCGTAAGGGTATAGAAACATTAAAATAAATTTCGTATCCATTGGTTTTTTCTCGAATACG
49924 AAATTGTAATT
131 AAATTGTAATT
49935 GTTAGGGACT
Statistics
Matches: 123, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
156 54 0.44
157 56 0.46
158 13 0.11
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.42
Consensus pattern (159 bp):
TTTATATTTCAAGGATAAAATGGTCTTTTCCTACCCATTCAAGTGATATTTCAATTATTCTTATG
GTCTTCCGTAAGGGTATAGAAACATTAAAATAAATTTCGTATCCATTGGTTTTTTCTCGAATACG
AAATTGTAATTTTCAAAATTAGCCACATA
Found at i:50285 original size:156 final size:153
Alignment explanation
Indices: 49990--51000 Score: 501
Period size: 156 Copynumber: 6.5 Consensus size: 153
49980 TCACAAATCA
* * * * * * * * *
49990 CTCTAAAATCTTTTTTAAGACCTTTAGGGGTATCAGGTACTTCTACGTCGAAGATATCCCCTAGG
1 CTCTATAATCCTTTTAAAGTCCTTTAAGGATACCAGATACTTCTACGTCGAAGATATCCCTTAGG
* * * * * *
50055 GGTATTTTCATAATTTTTTAGGACCAACTCTTAAGTTGTCACCAGGTCTACTTTTATGTCGAAGG
66 GGCATTTTCGTAATTTTTTAGAACCAACTCTTAAGTTATCACCAGGTCCACTTTTATGCCGAAGG
*
50120 TAGGTATTTAGGATAGGTTCACCC
131 TAGGCATTTAGGATAGGTTCA-CC
* * * * *
50144 CTTTTATAGTCCTTTTAAAGTCTTTTAAGGTTACCAAGATACCTT-TACGTCAAAGATATCCCTT
1 C-TCTATAATCCTTTTAAAGTCCTTTAAGGATACC-AGATA-CTTCTACGTCGAAGATATCCCTT
* * *
50208 AGGGGCATTCTT-GTAATTTTTTAGAACCAAGTCTTAGGTTATCACCGGGTCCA-TTTTCATGCC
63 AGGGGCATT-TTCGTAATTTTTTAGAACCAACTCTTAAGTTATCACCAGGTCCACTTTT-ATGCC
*
50271 GAAGGTGGGCATTTAGGATAGGTTCACC
126 GAAGGTAGGCATTTAGGATAGGTTCACC
* * * * * *
50299 CTCTATAATTCTTTTTAAGTCCTTTAGGGATATCAGATACTTCCACGTCGAAGGTATCCCCTTA-
1 CTCTATAATCCTTTTAAAGTCCTTTAAGGATACCAGATACTTCTACGTCGAAGATAT-CCCTTAG
* * * * * * ** * *
50363 GGGCATTTTCGTAATTTTTTAGAATCGAGTCCTT-ACTTGTCACTAGGTCTGCTTTTA--ACGAT
65 GGGCATTTTCGTAATTTTTTAGAACCAACT-CTTAAGTTATCACCAGGTCCACTTTTATGCCGAA
** * * **
50425 GGTAGATATTTAAGATAAGTTCGTC
129 GGTAGGCATTTAGGATAGGTTCACC
* * * * * * *
50450 CT-AATTCAAACCTTTTTAAGT-CTATTAGGGATACAAGGATACTT-TCATGTCGAAGGTATCCC
1 CTCTA-T-AATCCTTTTAAAGTCCT-TTAAGGATACCA-GATACTTCT-ACGTCGAAGATATCCC
* * * * * * *** *
50512 TTAAGAGGTATTTTCGTAATTTCTTAGAA-CAACTCCTAGGTTGTCACCAGGTTTGCTTTTTTGC
61 TT-AGGGGCATTTTCGTAATTTTTTAGAACCAACTCTTAAGTTATCACCAGGTCCACTTTTATGC
*
50576 CGAATGT-GGACATTTAGGATAGGTTCATCC
125 CGAAGGTAGG-CATTTAGGATAGGTTCA-CC
* * * * * * * ** * * * * *
50606 TATCTCTAGT-CTTTTTAAGTCCTTTAGGGTTGTCGGGATATTTTTACGTCGAAGGTATACTTGT
1 -CTCTATAATCCTTTTAAAGTCCTTTAAGGAT-ACCAGATACTTCTACGTCGAAGATATCCCT-T
* * * * * * *** ** * *
50670 AGGGGTATTTTCATAATTTTCTAGAACCAACTCCTAGGTTGTCATTGGGTCTGCTTTTTTACCGA
63 AGGGGCATTTTCGTAATTTTTTAGAACCAACTCTTAAGTTATCACCAGGTCCACTTTTATGCCGA
*
50735 AGGTGGGCATTTAGGATAGGTTCATCC
128 AGGTAGGCATTTAGGATAGGTTCA-CC
* * * * * * * ** *
50762 CT-TACCTAGT-ATTTTTAATTCCTTTAGGGTTGCTGGAATACTTTTACGTCGAA-AGTATACCC
1 CTCTA--TAATCCTTTTAAAGTCCTTTAAGGATACCAG-ATACTTCTACGTCGAAGA-TAT-CCC
* * ** * * **
50824 GTAAGGATATTTTCGTAATTTTTTAGAACCAACTCCTAAGTCATCACCAGGTCTGCTTTTATGCC
61 TTAGGGGCATTTTCGTAATTTTTTAGAACCAACTCTTAAGTTATCACCAGGTCCACTTTTATGCC
* *
50889 GAAGGT-GGATATTTAGGATAGATTCATCC
126 GAAGGTAGG-CATTTAGGATAGGTTCA-CC
* * * * * * * * * * * *
50918 CATTTCT-ATCCTTTTGAAGTCCTTTAGGGGTATCGGGTATTTCTACGTAGAAGGTATCCCTTAA
1 C-TCTATAATCCTTTTAAAGTCCTTTAAGGATACCAGATACTTCTACGTCGAAGATATCCCTTAG
* *
50982 GGGTATTTTTGTAATTTTT
65 GGGCATTTTCGTAATTTTT
51001 CTTGAACTTA
Statistics
Matches: 672, Mismatches: 145, Indels: 80
0.75 0.16 0.09
Matches are distributed among these distances:
150 1 0.00
151 26 0.04
152 34 0.05
153 93 0.14
154 85 0.13
155 129 0.19
156 292 0.43
157 11 0.02
158 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (153 bp):
CTCTATAATCCTTTTAAAGTCCTTTAAGGATACCAGATACTTCTACGTCGAAGATATCCCTTAGG
GGCATTTTCGTAATTTTTTAGAACCAACTCTTAAGTTATCACCAGGTCCACTTTTATGCCGAAGG
TAGGCATTTAGGATAGGTTCACC
Found at i:58941 original size:79 final size:77
Alignment explanation
Indices: 58720--58951 Score: 270
Period size: 77 Copynumber: 3.0 Consensus size: 77
58710 ATTATTTCAG
* *
58720 TACAGTAATCATCACCATTTATATAT-TAAGATACGTTTATAAATTATAAAAATCATATTTATGA
1 TACACTAATCATCA-CATTTATATATATAAGAT-CGTTTATAAATTATAAAAATCATATTTATAA
*
58784 ATAATAATTAAATT
64 ATAATAATTAAACT
* * ** *
58798 TACACTAATCATTACTATTTATATATATAA-TTTATTTATGAATTATAAAAATCATATTTATAAA
1 TACACTAATCATCAC-ATTTATATATATAAGATCGTTTATAAATTATAAAAATCATATTTATAAA
*
58862 TGATAATTAAACT
65 TAATAATTAAACT
* * * **
58875 TACACTAATCATCATCATTCATATGTATAAGACTCGTTTATAAATTATAAAAGTCATACATATAA
1 TACACTAATCATCA-CATTTATATATATAAGA-TCGTTTATAAATTATAAAAATCATATTTATAA
*
58940 ATAATGATTAAA
64 ATAATAATTAAA
58952 TTTATATCGA
Statistics
Matches: 128, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
77 65 0.51
78 24 0.19
79 39 0.30
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.40
Consensus pattern (77 bp):
TACACTAATCATCACATTTATATATATAAGATCGTTTATAAATTATAAAAATCATATTTATAAAT
AATAATTAAACT
Found at i:59623 original size:17 final size:17
Alignment explanation
Indices: 59601--59659 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
59591 CTAAGTCGTT
59601 ATTAAAATTATTTATAA
1 ATTAAAATTATTTATAA
59618 ATTAAAATTAAATTTAT--
1 ATTAAAATT--ATTTATAA
59635 -TT-AAATTATTTATAA
1 ATTAAAATTATTTATAA
59650 ATTAAAATTA
1 ATTAAAATTA
59660 AACTCATTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 6 0.17
15 5 0.14
16 4 0.11
17 15 0.42
19 6 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTAAAATTATTTATAA
Found at i:59641 original size:32 final size:32
Alignment explanation
Indices: 59599--59661 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
59589 CACTAAGTCG
59599 TTATTAAAATTATTTATAAATTAAAATTAAAT
1 TTATTAAAATTATTTATAAATTAAAATTAAAT
*
59631 TTATTTAAATTATTTATAAATTAAAATTAAA
1 TTATTAAAATTATTTATAAATTAAAATTAAA
59662 CTCATTCGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
TTATTAAAATTATTTATAAATTAAAATTAAAT
Found at i:60460 original size:2 final size:2
Alignment explanation
Indices: 60455--60497 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
60445 CTTTTAAAAA
*
60455 AT AT AT A- AT AT -T TT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60495 AT A
1 AT A
60498 CGCACGTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:60905 original size:21 final size:21
Alignment explanation
Indices: 60880--60929 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
60870 AAAAATAGAT
*
60880 TTTTTAAACAAGAATTTATTTA
1 TTTTCAAACAA-AATTTATTTA
**
60902 TTTTCAATGAAAATTTATTTA
1 TTTTCAAACAAAATTTATTTA
60923 TTTTCAA
1 TTTTCAA
60930 TGAAAATCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (21 bp):
TTTTCAAACAAAATTTATTTA
Found at i:60930 original size:21 final size:21
Alignment explanation
Indices: 60892--60936 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
60882 TTTAAACAAG
60892 AATTTATTTATTTTCAATGAA
1 AATTTATTTATTTTCAATGAA
60913 AATTTATTTATTTTCAATGAA
1 AATTTATTTATTTTCAATGAA
60934 AAT
1 AAT
60937 CTATCACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (21 bp):
AATTTATTTATTTTCAATGAA
Found at i:62515 original size:18 final size:17
Alignment explanation
Indices: 62494--62541 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
62484 TTTAATTAAT
62494 TTTATATATTTTATATGA
1 TTTATATATTTTATAT-A
*
62512 TTTATATTTATTTA-ATA
1 TTTATATAT-TTTATATA
62529 TTTA-ATATTTTAT
1 TTTATATATTTTAT
62542 TTACGTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.15
16 3 0.12
17 5 0.19
18 10 0.38
19 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTATATATTTTATATA
Found at i:62529 original size:20 final size:19
Alignment explanation
Indices: 62483--62529 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
62473 GTTTAAAGAA
62483 ATTTAAT-TAATTTTATAT
1 ATTTAATATAATTTTATAT
* * *
62501 ATTTTATATGATTTATATTT
1 ATTTAATATAATTT-TATAT
62521 ATTTAATAT
1 ATTTAATAT
62530 TTAATATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 6 0.26
19 5 0.22
20 12 0.52
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTAATATAATTTTATAT
Found at i:62695 original size:16 final size:15
Alignment explanation
Indices: 62674--62704 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
62664 TATTAAATTT
62674 AATATTTAATTTTTTA
1 AATATTT-ATTTTTTA
62690 AATATTTATTTTTTA
1 AATATTTATTTTTTA
62705 TAAAATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
AATATTTATTTTTTA
Found at i:63246 original size:13 final size:13
Alignment explanation
Indices: 63230--63254 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63220 ATCAATTATA
63230 ATAAATATCAATT
1 ATAAATATCAATT
63243 ATAAATATCAAT
1 ATAAATATCAAT
63255 GACAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAAATATCAATT
Found at i:65284 original size:2 final size:2
Alignment explanation
Indices: 65277--65312 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
65267 AATGAAGAAA
65277 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65313 TTCGTCTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68231 original size:23 final size:22
Alignment explanation
Indices: 68195--68237 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
68185 TGATAAATTG
**
68195 AATTTTAATTTTTTATATTTTAA
1 AATTTTAAAATTTTA-ATTTTAA
68218 AATTTTAAAATTTTAATTTT
1 AATTTTAAAATTTTAATTTT
68238 TTTGTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
AATTTTAAAATTTTAATTTTAA
Found at i:68238 original size:23 final size:23
Alignment explanation
Indices: 68195--68239 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
68185 TGATAAATTG
* *
68195 AATTTTAATTTTTTATATTTTAA
1 AATTTTAAATTTTAATATTTTAA
*
68218 AATTTTAAAATTTTAATTTTTT
1 AATTTT-AAATTTTAATATTTT
68240 TGTAATTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 6 0.33
24 12 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
AATTTTAAATTTTAATATTTTAA
Found at i:68345 original size:24 final size:26
Alignment explanation
Indices: 68318--68366 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
68308 TAGTAAGTAA
68318 AAAAATT-TCAAT-AATA-TAAAACTT
1 AAAAATTCT-AATAAATATTAAAACTT
68342 AAAAATTCTAATAAATATTAAAACT
1 AAAAATTCTAATAAATATTAAAACT
68367 ATAATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 10 0.45
25 5 0.23
26 7 0.32
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (26 bp):
AAAAATTCTAATAAATATTAAAACTT
Found at i:68987 original size:25 final size:24
Alignment explanation
Indices: 68931--68987 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
68921 ATATTTACAT
*
68931 AATAATAT-TAAATAAAATTTTTA
1 AATAATATACAAATAAAATTTTTA
* *
68954 AATAGTATACAAATTAAATTTTTA
1 AATAATATACAAATAAAATTTTTA
*
68978 TATAAATATA
1 AAT-AATATA
68988 TAAAAATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 7 0.26
24 15 0.56
25 5 0.19
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (24 bp):
AATAATATACAAATAAAATTTTTA
Found at i:69771 original size:16 final size:17
Alignment explanation
Indices: 69742--69784 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
69732 AAAAAATTAA
*
69742 TTTATTTTTAAACTCTT
1 TTTATTTTTAAACTATT
69759 TTTATTTTT-AACTATT
1 TTTATTTTTAAACTATT
69775 TTTAGTTTTT
1 TTTA-TTTTT
69785 TATTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTATTTTTAAACTATT
Found at i:71970 original size:15 final size:16
Alignment explanation
Indices: 71948--71982 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
71938 AACTTGAGCT
*
71948 CAAAAAAACCCAAACC
1 CAAAAAAGCCCAAACC
*
71964 CAAAAAAGCCTAAACC
1 CAAAAAAGCCCAAACC
71980 CAA
1 CAA
71983 GAGAACCCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.34, G:0.03, T:0.03
Consensus pattern (16 bp):
CAAAAAAGCCCAAACC
Found at i:72213 original size:20 final size:20
Alignment explanation
Indices: 72170--72213 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
72160 AAATAATAAT
*
72170 TTATCAAAAAGTAATATATT
1 TTATCAAAAAGTAATATATA
72190 TTATCAAAAAGTAA-ATTATA
1 TTATCAAAAAGTAATA-TATA
72210 TTAT
1 TTAT
72214 GAGCTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.41
Consensus pattern (20 bp):
TTATCAAAAAGTAATATATA
Found at i:73101 original size:29 final size:29
Alignment explanation
Indices: 73024--73110 Score: 70
Period size: 31 Copynumber: 2.9 Consensus size: 29
73014 GAAAATTAAT
* *
73024 TTTATTTATAAATATAGATTCTAATAAATAA
1 TTTATTTAAAAATA-ATATT-TAATAAATAA
* *
73055 -ATATATTAGAAATAAATATTATAATAAA-AA
1 TTTAT-TTAAAAAT-AATATT-TAATAAATAA
73085 TTTATTTAAAAATAATAATTTAATAA
1 TTTATTTAAAAATAAT-ATTTAATAA
73111 TTTGATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
29 9 0.20
30 15 0.33
31 21 0.46
32 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.41
Consensus pattern (29 bp):
TTTATTTAAAAATAATATTTAATAAATAA
Found at i:75401 original size:612 final size:612
Alignment explanation
Indices: 74238--75439 Score: 2138
Period size: 612 Copynumber: 2.0 Consensus size: 612
74228 CCCGCTGGAC
*
74238 TTATAAGCCTTGCAAAGAGCCACTATGGACTTATAATTCAAGATTTTAATGCCTTCTAATTCTTA
1 TTATAAGCCTTGCAAAGAGCCACTATAGACTTATAATTCAAGATTTTAATGCCTTCTAATTCTTA
* *
74303 GGATGATGCAGGGGAGGTCTATTTTGGGGTATCTAGATATTTCAAAGAATGATGGTGTAAAAAAT
66 GGATGATGCAGGGGAGGTCTATTTTGAGGTATCTAGATATTTCAAAGAATGATGGTGTAAAAAAG
*
74368 ATGAATGATGCCTATGCATAAAGGTTTAAAACATACATAAATGACCTACGAATGATGATCCAAGG
131 ATGAATAATGCCTATGCATAAAGGTTTAAAACATACATAAATGACCTACGAATGATGATCCAAGG
* *
74433 CTCGCTAAAGCCACAGATAAAAAGGATTCGAAAATTCAAAAATTGACTTGCGAATGCCATTTTTG
196 CTCGCTAAAGCAACAGATAAAAAGGATTCGAAAATTCAAAAATTGACATGCGAATGCCATTTTTG
*
74498 TAATTAATTTATTTTTACATGCATTGCTCAATATGCTCCTCCAATATAAAGAGACGTTTGTACCC
261 TAATTAATTTATTTTTACATGCATTGCTCAATATGCTCCTACAATATAAAGAGACGTTTGTACCC
74563 AACCTTTACAACCTTAGACCTTAAATCACTAATCCATATCGGGGCCAATCTATTGGTGCCTAAAT
326 AACCTTTACAACCTTAGACCTTAAATCACTAATCCATATCGGGGCCAATCTATTGGTGCCTAAAT
* *
74628 ACTATGCGATTTATGGGAAAATAAAGATTCCTATACAAAAGTTGTTTGTACACCTTTTTTACGAC
391 ACTATACGATTTATGAGAAAATAAAGATTCCTATACAAAAGTTGTTTGTACACCTTTTTTACGAC
*
74693 TTCAAAGGGATGATTAAAGCATAACATTTTCCATTATAGGTTAAATGATTTACCTCTGAGATCAA
456 TTCAAAGGGATGATTAAAGCATAACATTTGCCATTATAGGTTAAATGATTTACCTCTGAGATCAA
*
74758 CATTGACTGATTTCTAACTAGATTCCCTATTAATTAGTACCTCAATTTCAAACTTCTATGGCACT
521 CATTGACTGATTTCTAACTAGATTCCCTATTAATTAGTACCTCAATTTCAAACTTCTATGGCACC
74823 GTTTTATCTAAATTTTTTTTAAGGATT
586 GTTTTATCTAAATTTTTTTTAAGGATT
*
74850 TTATAAGCCTTGCAACA-AGCCTCTATAG-CTTATAATTCAAGATTTTAATGCCTTCTAATTCTT
1 TTATAAGCCTTGCAA-AGAGCCACTATAGACTTATAATTCAAGATTTTAATGCCTTCTAATTCTT
74913 AGGATGATGCAGGGGAGGTCTATTTTGAGGTATCTAGATATTTCAAAGAATGATGGTGTAAAAAA
65 AGGATGATGCAGGGGAGGTCTATTTTGAGGTATCTAGATATTTCAAAGAATGATGGTGTAAAAAA
* * *
74978 GATGAATAATGCCTATGCATAAAGGTTTAAAACATACATGAATGACCTATGAATGATGTTCCAAG
130 GATGAATAATGCCTATGCATAAAGGTTTAAAACATACATAAATGACCTACGAATGATGATCCAAG
** * *
75043 GCTCGCTAAAGCAATGGATTAAAAAGGATTTGGAAATTCAAAAATTGACATGCGAATGCCATTTT
195 GCTCGCTAAAGCAACAGA-TAAAAAGGATTCGAAAATTCAAAAATTGACATGCGAATGCCATTTT
* *
75108 TGTAATTAATTTATTTTTACATGCATTGCTCAATATGCTCTTACTATATAAAGAGACGTTTGTAC
259 TGTAATTAATTTATTTTTACATGCATTGCTCAATATGCTCCTACAATATAAAGAGACGTTTGTAC
* * *
75173 CTAACCTTTACAACCTTAGACCTTAAATCACTAATCTATATCGGGGCCAATCTATTGGTGCCTGA
324 CCAACCTTTACAACCTTAGACCTTAAATCACTAATCCATATCGGGGCCAATCTATTGGTGCCTAA
* *
75238 ATACTATACGGTTTATGAGAAAATGAAGATTCCTATACAAAAGTTGTTTGTACACCTTTTTTACG
389 ATACTATACGATTTATGAGAAAATAAAGATTCCTATACAAAAGTTGTTTGTACACCTTTTTTACG
75303 ACTTCAAAGGGATGATTAAAGCATAACATTTGCCATTATAGGTTAAATGATTTACCTCTGAGATC
454 ACTTCAAAGGGATGATTAAAGCATAACATTTGCCATTATAGGTTAAATGATTTACCTCTGAGATC
75368 AACATTGACTGATTTCTAACTAGATTCCCTATTAATTAGTACCTCAATTTCAAACTTCTATGGCA
519 AACATTGACTGATTTCTAACTAGATTCCCTATTAATTAGTACCTCAATTTCAAACTTCTATGGCA
75433 CCGTTTT
584 CCGTTTT
75440 GTCTTCCATG
Statistics
Matches: 562, Mismatches: 26, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
611 174 0.31
612 387 0.69
613 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (612 bp):
TTATAAGCCTTGCAAAGAGCCACTATAGACTTATAATTCAAGATTTTAATGCCTTCTAATTCTTA
GGATGATGCAGGGGAGGTCTATTTTGAGGTATCTAGATATTTCAAAGAATGATGGTGTAAAAAAG
ATGAATAATGCCTATGCATAAAGGTTTAAAACATACATAAATGACCTACGAATGATGATCCAAGG
CTCGCTAAAGCAACAGATAAAAAGGATTCGAAAATTCAAAAATTGACATGCGAATGCCATTTTTG
TAATTAATTTATTTTTACATGCATTGCTCAATATGCTCCTACAATATAAAGAGACGTTTGTACCC
AACCTTTACAACCTTAGACCTTAAATCACTAATCCATATCGGGGCCAATCTATTGGTGCCTAAAT
ACTATACGATTTATGAGAAAATAAAGATTCCTATACAAAAGTTGTTTGTACACCTTTTTTACGAC
TTCAAAGGGATGATTAAAGCATAACATTTGCCATTATAGGTTAAATGATTTACCTCTGAGATCAA
CATTGACTGATTTCTAACTAGATTCCCTATTAATTAGTACCTCAATTTCAAACTTCTATGGCACC
GTTTTATCTAAATTTTTTTTAAGGATT
Done.