Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1826
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34315
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Found at i:834 original size:23 final size:24
Alignment explanation
Indices: 808--859 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
798 TTTTATTTTG
*
808 TTTTTGCACTTTTTCTTTTCA-TT
1 TTTTTGCACTTTTGCTTTTCAGTT
** *
831 TTTTTGTGCTTTTGCTTTTGAGTT
1 TTTTTGCACTTTTGCTTTTCAGTT
855 TTTTT
1 TTTTT
860 TTTGTCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.06, C:0.12, G:0.12, T:0.71
Consensus pattern (24 bp):
TTTTTGCACTTTTGCTTTTCAGTT
Found at i:6879 original size:51 final size:52
Alignment explanation
Indices: 6763--6880 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 52
6753 ATAATAACGG
* * *
6763 GGTTAGAGTATCCCCGATTATGGGAAAACAGTGTTCTAAAAAATAAAATCGG
1 GGTTAGAGTATCCCCGATTATGGAAAAACAGTGTTCTAAAAAATAAAACCGA
* ** * *
6815 GGTTAAAGTATCCCCGATTAT-GAAAAATTGATGTT-TTAGAAATAAAACCGA
1 GGTTAGAGTATCCCCGATTATGGAAAAACAG-TGTTCTAAAAAATAAAACCGA
*
6866 GGTTGGAGTATCCCC
1 GGTTAGAGTATCCCC
6881 TCGGAAATAA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
51 31 0.56
52 24 0.44
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (52 bp):
GGTTAGAGTATCCCCGATTATGGAAAAACAGTGTTCTAAAAAATAAAACCGA
Found at i:6909 original size:79 final size:79
Alignment explanation
Indices: 6812--7119 Score: 456
Period size: 79 Copynumber: 3.9 Consensus size: 79
6802 AAAATAAAAT
** * *
6812 CGGGGTTAAAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
6877 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
** * *
6891 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
6956 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * * * *
6970 CGGGGTTGGAGTATCCCCAATTGTGAAAAATTAATATTTTAGAGATAGAACCGA-GTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
**
7034 CCCCTCAAAAATAA
66 CCCCTCGGAAATAA
* *
7048 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
7113 CCCCTCG
66 CCCCTCG
7120 ATTAAAGGAA
Statistics
Matches: 207, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
78 71 0.34
79 136 0.66
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
CCCCTCGGAAATAA
Found at i:7099 original size:157 final size:158
Alignment explanation
Indices: 6812--7119 Score: 474
Period size: 157 Copynumber: 2.0 Consensus size: 158
6802 AAAATAAAAT
* * * *
6812 CGGGGTTAAAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTAAAGTATCCCCAATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTAGAGTAT
** ** *
6877 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAC
66 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
6942 CGGGGTTGGAGTATCCCCTCGGAAATAA
131 CGGGGTTGGAGTATCCCCTCGGAAATAA
** * * *
6970 CGGGGTTGGAGTATCCCCAATTGTGAAAAATTAATATTTTAGAGATAGAACCGA-GTTAGAGTAT
1 CGGGGTTAAAGTATCCCCAATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTAGAGTAT
*
7034 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
66 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
7099 CGGGGTTGGAGTATCCCCTCG
131 CGGGGTTGGAGTATCCCCTCG
7120 ATTAAAGGAA
Statistics
Matches: 135, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
157 89 0.66
158 46 0.34
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (158 bp):
CGGGGTTAAAGTATCCCCAATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTAGAGTAT
CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
CGGGGTTGGAGTATCCCCTCGGAAATAA
Found at i:7115 original size:51 final size:50
Alignment explanation
Indices: 7048--7169 Score: 140
Period size: 53 Copynumber: 2.4 Consensus size: 50
7038 TCAAAAATAA
*
7048 CGGGGTTGGAGTATCCCCGATTGTGAA-AAATTAATATTTT-AGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGA-T-TAAAGAAATTAATATTTTGA-AAATAAAAC
** *
7099 CGGGGTTGGAGTATCCCCTCGATTAAAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTAT-CCC-CGATTAAA-GAAATTAATATTTTGAAAATAAAAC
7152 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
7170 TCGGAAATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
51 18 0.29
52 7 0.11
53 36 0.58
54 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGATTAAAGAAATTAATATTTTGAAAATAAAAC
Found at i:7134 original size:210 final size:210
Alignment explanation
Indices: 6891--7379 Score: 862
Period size: 210 Copynumber: 2.3 Consensus size: 210
6881 TCGGAAATAA
6891 CGGGGTTGGAGTAT-CCC-CGATTATGAA--AAATTGGTGTTTT-AGAAATAAAACCGGGGTTGG
1 CGGGGTTGGAGTATCCCCTCGATTA--AAGGAAATTGGTGTTTTGA-AAATAAAACCGGGGTTGG
6951 AGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTAATATTTTAGAGAT
63 AGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTAATATTTTAGAGAT
*
7016 AGAACCGAGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTA
128 AAAACCGAGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTA
7081 ATATTTTAGAAATAAAAC
193 ATATTTTAGAAATAAAAC
7099 CGGGGTTGGAGTATCCCCTCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCTCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGT
* *
7164 ATCCCCTCGGAAATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTAATATTTTAGAGATAAA
66 ATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTAATATTTTAGAGATAAA
* * *
7229 ACCGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATA
131 ACCGAGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATA
7294 TTTTAGAAATAAAAC
196 TTTTAGAAATAAAAC
7309 CGGGGTTGGAGTATCCCCTCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCTCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGT
7374 ATCCCC
66 ATCCCC
7380 GATTACGAGC
Statistics
Matches: 270, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
208 16 0.06
209 3 0.01
210 250 0.93
211 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (210 bp):
CGGGGTTGGAGTATCCCCTCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGT
ATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTAATATTTTAGAGATAAA
ACCGAGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATA
TTTTAGAAATAAAAC
Found at i:7256 original size:78 final size:79
Alignment explanation
Indices: 7143--7330 Score: 342
Period size: 78 Copynumber: 2.4 Consensus size: 79
7133 GGTGTTTTGA
* *
7143 AAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCTCGATTGTGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
7208 AATTAATATTTTAG
66 AATTAATATTTTAG
*
7222 AGATAAAACC-GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
7286 AATTAATATTTTAG
66 AATTAATATTTTAG
7300 AAATAAAACCGGGGTTGGAGTATCCCCTCGA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGA
7331 TTAAAGGAAA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
78 75 0.72
79 29 0.28
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (79 bp):
AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
AATTAATATTTTAG
Found at i:7325 original size:51 final size:51
Alignment explanation
Indices: 7258--7383 Score: 150
Period size: 53 Copynumber: 2.4 Consensus size: 51
7248 TCGAAAATAA
*
7258 CGGGGTTGGAGTATCCCCGATTGTGAA-AAATTAATATTTT-AGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-TAAAGAAATTAATATTTTGA-AAATAAAAC
** *
7309 CGGGGTTGGAGTATCCCCTCGA-TTAAAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTAT-CCC-CGATTTAAA-GAAATTAATATTTTGAAAATAAAAC
7362 CGGGGTTGGAGTATCCCCGATT
1 CGGGGTTGGAGTATCCCCGATT
7384 ACGAGCAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
51 20 0.31
52 8 0.12
53 36 0.55
54 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTTAAAGAAATTAATATTTTGAAAATAAAAC
Found at i:8382 original size:18 final size:18
Alignment explanation
Indices: 8308--8382 Score: 62
Period size: 18 Copynumber: 4.1 Consensus size: 18
8298 AATTGCTACC
* *
8308 TGCTGAAGTTGCTGCTCT
1 TGCTGGAGTTGCTGCTGT
* * * *
8326 CGCTGGAGCTGCTGTTGCG
1 TGCTGGAGTTGCTGCTG-T
*
8345 TGCTGGAGTTGCAG-TCGT
1 TGCTGGAGTTGCTGCT-GT
8363 TGCTGGAGTTGCTGCTGT
1 TGCTGGAGTTGCTGCTGT
8381 TG
1 TG
8383 TTACGTGCTG
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
18 30 0.70
19 13 0.30
ACGTcount: A:0.08, C:0.20, G:0.37, T:0.35
Consensus pattern (18 bp):
TGCTGGAGTTGCTGCTGT
Found at i:8439 original size:47 final size:43
Alignment explanation
Indices: 8333--8431 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 43
8323 TCTCGCTGGA
* * *
8333 GCTGCTGTTGCGTGCTGGAGTTGCAGTCGTTGCTGGAGTTGCT
1 GCTGTTGTTACGTGCTGGAGTTGCAGTCGTTGCTGGAGCTGCT
*
8376 GCTGTTGTTACGTGCTGGAGTTGCAGTCGTTGGCTACTGGAGCTGTT
1 GCTGTTGTTACGTGCTGGAGTTGCAGTCGTT-G---CTGGAGCTGCT
8423 GCTGTTGTT
1 GCTGTTGTT
8432 TTTTGCTGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
43 29 0.60
44 1 0.02
47 18 0.38
ACGTcount: A:0.08, C:0.17, G:0.37, T:0.37
Consensus pattern (43 bp):
GCTGTTGTTACGTGCTGGAGTTGCAGTCGTTGCTGGAGCTGCT
Found at i:8990 original size:50 final size:50
Alignment explanation
Indices: 8930--9093 Score: 274
Period size: 50 Copynumber: 3.3 Consensus size: 50
8920 GCTTTTTTCA
*
8930 TTTCCCATGCATGTCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGC
1 TTTCCCATGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGC
* * * *
8980 TTTCCCATGCATGCCTCCGCATGCTTTGTCTCCAATTGCAATTTTTGTGT
1 TTTCCCATGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGC
*
9030 TTTCCCATGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATCTTTATGC
1 TTTCCCATGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGC
9080 TTTCCCATGCATGC
1 TTTCCCATGCATGC
9094 ATTTTCTATT
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 104 1.00
ACGTcount: A:0.15, C:0.27, G:0.15, T:0.43
Consensus pattern (50 bp):
TTTCCCATGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATTTTTATGC
Found at i:9249 original size:6 final size:6
Alignment explanation
Indices: 9215--9241 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9205 ATTATTATTT
9215 TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTT
9242 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGAA
Found at i:10632 original size:21 final size:22
Alignment explanation
Indices: 10587--10640 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
10577 TGGACATGTT
10587 AAAAATGCATGAAATATAATAA
1 AAAAATGCATGAAATATAATAA
10609 AAAAATGCATGAAATATAAT-A
1 AAAAATGCATGAAATATAATAA
10630 AAAAATGCATG
1 AAAAATGCATG
10641 GTCAAAGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 12 0.38
22 20 0.62
ACGTcount: A:0.61, C:0.06, G:0.11, T:0.22
Consensus pattern (22 bp):
AAAAATGCATGAAATATAATAA
Found at i:11599 original size:20 final size:20
Alignment explanation
Indices: 11552--11626 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
11542 AAAAAGACAT
*
11552 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
11571 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
11592 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
11612 AATGTATCGATACAT
1 AATGTATCGATACAT
11627 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:11620 original size:40 final size:39
Alignment explanation
Indices: 11549--11626 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
11539 GGTAAAAAGA
* *
11549 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
11588 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
11627 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:16814 original size:18 final size:19
Alignment explanation
Indices: 16791--16874 Score: 75
Period size: 20 Copynumber: 4.3 Consensus size: 19
16781 AAATTTATTT
16791 TTAAAAT-TTTTAATTAAA
1 TTAAAATATTTTAATTAAA
16809 TTAAAAT-TTTTAATTATAAA
1 TTAAAATATTTTAA-T-TAAA
** *
16829 TT-AAATAAATTATATTAAT
1 TTAAAATATTTTA-ATTAAA
16848 TTAAAATATTTATAATTACAA
1 TTAAAATATTT-TAATTA-AA
16869 TTAAAA
1 TTAAAA
16875 AATATAACAT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
18 13 0.25
19 10 0.19
20 20 0.38
21 10 0.19
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAAAATATTTTAATTAAA
Found at i:16846 original size:25 final size:24
Alignment explanation
Indices: 16802--16852 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
16792 TAAAATTTTT
16802 AATTAAATTAAAATTTTTAATTATA
1 AATTAAATTAAAATTTTTAATT-TA
16827 AATTAAA-T-AAATTATATTAATTTA
1 AATTAAATTAAAATT-T-TTAATTTA
16851 AA
1 AA
16853 ATATTTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 5 0.21
24 6 0.25
25 13 0.54
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AATTAAATTAAAATTTTTAATTTA
Found at i:16852 original size:39 final size:39
Alignment explanation
Indices: 16803--16877 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
16793 AAAATTTTTA
16803 ATTAAATTAAAAT-TTT-TAATTATAAATTAAATAAATTAT
1 ATTAAATTAAAATATTTATAATTA-AAATTAAA-AAATTAT
* *
16842 ATTAATTTAAAATATTTATAATTACAATTAAAAAAT
1 ATTAAATTAAAATATTTATAATTAAAATTAAAAAAT
16878 ATAACATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
39 16 0.50
40 10 0.31
41 6 0.19
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (39 bp):
ATTAAATTAAAATATTTATAATTAAAATTAAAAAATTAT
Found at i:18445 original size:2 final size:2
Alignment explanation
Indices: 18438--18473 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
18428 ACAAAAATAA
18438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18474 TTCTTGCTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26331 original size:2 final size:2
Alignment explanation
Indices: 26324--26361 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
26314 TAAGGCCAGA
26324 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26362 CAACACACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.