genome.fa.s1827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1827
Parameters: 2 7 7 80 10 50 1000
Length:  67681

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--90	32	1.9	32	90	9	101	26	17	15	39	1.90
28--92	19	3.8	18	78	21	77	26	16	15	41	1.88
2514--2586	27	2.8	26	85	8	94	24	32	21	20	1.97
2570--2736	51	3.3	49	78	8	183	29	26	12	30	1.93
2570--2736	52	3.3	51	80	5	178	29	26	12	30	1.93
3747--3772	13	2.0	13	100	0	52	30	15	15	38	1.88
16356--16394	20	2.0	20	89	0	60	87	7	5	0	0.68
17406--17842	55	7.9	55	88	4	616	29	29	19	21	1.98
17454--17590	27	5.0	27	62	23	63	31	30	18	19	1.96
17600--17682	27	3.0	27	60	16	62	28	30	19	21	1.98
17678--17766	29	3.2	29	65	20	80	28	34	20	16	1.94
18527--18603	21	3.7	21	85	3	102	36	12	15	35	1.86
21203--21275	27	2.7	27	87	6	94	23	34	21	20	1.97
21258--21432	52	3.4	50	82	6	215	30	26	10	32	1.89
21094--21486	211	1.9	211	85	3	558	29	27	12	30	1.93
23679--23717	19	2.1	19	85	9	53	35	0	0	64	0.94
26588--26644	22	2.6	22	91	0	87	31	15	12	40	1.85
26791--26854	22	2.9	22	81	4	76	35	9	7	46	1.65
27207--27279	22	3.3	22	86	0	101	35	8	9	46	1.66
27273--27330	2	29.0	2	100	0	116	50	0	0	50	1.00
27491--27578	22	4.0	22	70	11	63	34	10	13	42	1.78
34138--34179	22	1.9	22	90	9	68	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34516--34561	14	3.2	14	78	6	56	47	2	0	50	1.13
34722--34747	2	13.0	2	100	0	52	50	0	0	50	1.00
35623--35660	16	2.2	18	81	13	53	60	0	0	39	0.97
35634--35711	24	3.7	21	75	16	65	58	2	2	35	1.25
38281--38365	33	2.6	33	79	9	93	68	1	3	27	1.13
38313--38359	15	2.9	15	87	9	58	70	0	0	29	0.88
38300--38359	9	7.0	9	76	16	56	71	0	3	25	1.01
38281--38355	24	3.1	24	76	14	75	70	1	4	24	1.12
43301--43326	3	8.7	3	100	0	52	69	0	30	0	0.89
44616--44650	6	5.8	6	89	0	52	65	20	2	11	1.37
45082--45197	48	2.4	48	97	0	214	25	3	22	49	1.65
45531--45559	2	14.5	2	100	0	58	48	0	0	51	1.00
45743--45800	23	2.5	24	77	8	57	44	0	0	55	0.99
46141--46193	27	2.0	26	85	10	72	20	0	3	75	0.96
46114--46193	26	3.0	26	72	13	65	22	0	6	71	1.08
46157--46203	15	3.3	15	85	5	53	23	0	0	76	0.78
46111--46194	14	6.2	13	70	17	57	23	0	5	70	1.09
46295--46330	15	2.4	15	90	9	56	61	0	0	38	0.96
46289--46353	24	2.8	24	79	6	62	58	3	0	38	1.14
49532--49601	10	7.0	10	75	6	61	1	18	1	78	0.90
49530--49595	19	3.5	19	77	6	62	1	18	1	78	0.90
49565--49601	5	7.8	5	85	8	51	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49556--49601	14	3.4	14	77	14	51	0	21	0	78	0.76
49565--49601	19	1.9	19	94	0	65	0	18	0	81	0.70
49531--49600	23	3.1	23	73	19	67	1	17	1	80	0.87
49532--49620	41	2.2	40	82	11	101	2	20	1	76	0.96
49946--49985	22	1.9	21	90	10	64	2	7	20	70	1.24
50163--50200	10	3.8	10	80	13	51	5	13	0	81	0.85
59151--59217	33	2.0	33	88	0	98	34	11	13	40	1.81
59171--59195	13	1.9	13	100	0	50	36	16	16	32	1.90
59258--59282	13	1.9	13	100	0	50	32	16	16	36	1.90
59291--59415	52	2.4	52	94	0	214	36	18	16	28	1.93
67197--67313	52	2.3	51	91	4	182	30	17	17	33	1.94
67194--67333	52	2.7	50	82	13	160	31	17	18	32	1.95
67322--67346	13	1.9	13	100	0	50	36	16	16	32	1.90
67387--67453	33	2.0	33	88	0	98	40	13	11	34	1.81
67409--67433	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!