Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1834
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 246159
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 1 of 2
Found at i:605 original size:22 final size:22
Alignment explanation
Indices: 580--627 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
570 TTTTTTGTAT
* *
580 ATTTATTGGAAATTATGTTAAA
1 ATTTATTAGAAATTATATTAAA
*
602 ATTTATTAGAGATTATATTAAA
1 ATTTATTAGAAATTATATTAAA
624 ATTT
1 ATTT
628 TGTTTCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTTATTAGAAATTATATTAAA
Found at i:3924 original size:52 final size:52
Alignment explanation
Indices: 3776--3904 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
3766 CGAAATATGA
*
3776 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCTATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
3828 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGT
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
3880 AAATTTGCCTGCGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3905 AAGATTAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:3931 original size:13 final size:13
Alignment explanation
Indices: 3913--3937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3903 CAAAGATTAG
3913 TGTATCGATACAA
1 TGTATCGATACAA
3926 TGTATCGATACA
1 TGTATCGATACA
3938 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4017 original size:13 final size:13
Alignment explanation
Indices: 3999--4023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3989 ACAACACTTA
3999 TGTATCGATACAT
1 TGTATCGATACAT
4012 TGTATCGATACA
1 TGTATCGATACA
4024 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4021 original size:32 final size:32
Alignment explanation
Indices: 3980--4042 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3970 TAGCTTTATA
*
3980 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
4012 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
4043 AATCATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:4044 original size:19 final size:19
Alignment explanation
Indices: 3978--4044 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
3968 AGTAGCTTTA
*
3978 TATGTATCGATACAACACT
1 TATGTATCGATACAAAACT
3997 TATGTATCGATAC---A--
1 TATGTATCGATACAAAACT
4011 T-TGTATCGATACAAAACT
1 TATGTATCGATACAAAACT
4029 TATGTATCGATACAAA
1 TATGTATCGATACAAA
4045 TCATTGAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 1 0.02
19 27 0.64
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (19 bp):
TATGTATCGATACAAAACT
Found at i:4700 original size:50 final size:50
Alignment explanation
Indices: 4616--4744 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 50
4606 GTTGCCATTA
* * * *
4616 TTGACTATCCTTCACTAACCTTTGACAAAAGAGAGAGGTGGCCGTAATTG
1 TTGACGATTCTTCACCAACCTTTGACAAAAGAGAGAGGTGGCCATAATTG
* *
4666 TTGATGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATAATTG
1 TTGACGATTCTTCACCAACCTTTGACAAAAGAGAGAGGTGGCCATAATTG
4716 TTGACGATTCTTCACCAACCTTTGA-AAAA
1 TTGACGATTCTTCACCAACCTTTGACAAAA
4745 TGTGGCCATA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 3 0.04
50 68 0.96
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (50 bp):
TTGACGATTCTTCACCAACCTTTGACAAAAGAGAGAGGTGGCCATAATTG
Found at i:5038 original size:19 final size:19
Alignment explanation
Indices: 5014--5070 Score: 78
Period size: 19 Copynumber: 3.0 Consensus size: 19
5004 TTGGTTGTTA
5014 AGGTACTATTCACGTATAT
1 AGGTACTATTCACGTATAT
* *
5033 AGGTACTATTCACGCATAC
1 AGGTACTATTCACGTATAT
* *
5052 GGGCACTATTCACGTATAT
1 AGGTACTATTCACGTATAT
5071 GGTTACTGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (19 bp):
AGGTACTATTCACGTATAT
Found at i:9253 original size:50 final size:49
Alignment explanation
Indices: 9178--9295 Score: 182
Period size: 49 Copynumber: 2.4 Consensus size: 49
9168 ATTGATTATC
* *
9178 CTTCACCAACCTTTGACAATAGAGAGAGGTGGCCGTAATTGTTGACGATT
1 CTTCACCAACCTTTGACAATAGAGAGAGGT-GCCATAATTGTTAACGATT
* *
9228 CTTCACCAACCTTTGACAATAGAGAGATGTGCCATAATTGTTAACGGTT
1 CTTCACCAACCTTTGACAATAGAGAGAGGTGCCATAATTGTTAACGATT
*
9277 CTTAACCAACCTTTGACAA
1 CTTCACCAACCTTTGACAA
9296 ATGTGGCCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
49 34 0.54
50 29 0.46
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (49 bp):
CTTCACCAACCTTTGACAATAGAGAGAGGTGCCATAATTGTTAACGATT
Found at i:10903 original size:17 final size:20
Alignment explanation
Indices: 10864--10926 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 20
10854 ATTTACAAAT
10864 TAAATAAATCTTATTAATAA
1 TAAATAAATCTTATTAATAA
*
10884 TAAA-AAAT-TTA-TAATGA
1 TAAATAAATCTTATTAATAA
* *
10901 TAATTTAATAATATTATTAATAA
1 TAA-AT-A-AATCTTATTAATAA
10924 TAA
1 TAA
10927 TGGTTATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
17 8 0.24
18 3 0.09
19 4 0.12
20 5 0.15
21 3 0.09
22 3 0.09
23 8 0.24
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
TAAATAAATCTTATTAATAA
Found at i:19888 original size:51 final size:51
Alignment explanation
Indices: 19828--19930 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
19818 ATGTCAGTGC
*
19828 ATTTTTTACTTTTATTTTTTTTCTTTTTCCAATTATGAAAATAATAAAATG
1 ATTTTTTACTTTTATTTTTTTTCTTTTTCAAATTATGAAAATAATAAAATG
19879 ATTTTTTACTTTTATTTTTTTTCTTTTTCAAATTATGAAAATAATAAAATG
1 ATTTTTTACTTTTATTTTTTTTCTTTTTCAAATTATGAAAATAATAAAATG
19930 A
1 A
19931 AGTAACACAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (51 bp):
ATTTTTTACTTTTATTTTTTTTCTTTTTCAAATTATGAAAATAATAAAATG
Found at i:25106 original size:14 final size:13
Alignment explanation
Indices: 25083--25118 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
25073 TATTATTTGA
25083 TAAATTTAATATT
1 TAAATTTAATATT
25096 TAAATTTTAATATT
1 TAAA-TTTAATATT
25110 TAAAATTTA
1 T-AAATTTA
25119 TTATAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 14 0.67
15 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TAAATTTAATATT
Found at i:27361 original size:2 final size:2
Alignment explanation
Indices: 27354--27403 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
27344 CTAGGCAGCA
27354 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
27396 CT AT AT AT
1 AT AT AT AT
27404 TTATTTTTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27643 original size:18 final size:20
Alignment explanation
Indices: 27605--27645 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
27595 TATTTAATTT
*
27605 TTTAAAAGTATTTTAATATA
1 TTTAAAAGTATTATAATATA
27625 TTTAAAAG-ATTAT-ATATA
1 TTTAAAAGTATTATAATATA
27643 TTT
1 TTT
27646 CTGTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 4 0.20
20 8 0.40
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TTTAAAAGTATTATAATATA
Found at i:29545 original size:2 final size:2
Alignment explanation
Indices: 29532--29584 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
29522 AGCCTTGGAT
*
29532 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29574 TA TA TA TA TA T
1 TA TA TA TA TA T
29585 CATTCTCAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:31790 original size:29 final size:30
Alignment explanation
Indices: 31718--31791 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
31708 TGACATATTG
*
31718 ATCAAAGTATTATTGATTTTAAAATAAATT
1 ATCAAAGTATTATTGAATTTAAAATAAATT
*
31748 ATCAAAATCA-TATT-AATTTAAAATAAATT
1 ATCAAAGT-ATTATTGAATTTAAAATAAATT
* *
31777 ATTAGAGTATTATTG
1 ATCAAAGTATTATTG
31792 TTTTGACTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
28 1 0.03
29 23 0.64
30 11 0.31
31 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (30 bp):
ATCAAAGTATTATTGAATTTAAAATAAATT
Found at i:39197 original size:167 final size:164
Alignment explanation
Indices: 38925--39696 Score: 707
Period size: 167 Copynumber: 4.7 Consensus size: 164
38915 GAGTTATTGA
* * * * *
38925 TTTTCTTTGAAATTTCTCTTATTTTCGAAATA-TGAAGTTTTC-AATTCCGTAAATATTTTT-GA
1 TTTTCCTTGAAATTT-TCTTGTTTTCGAAAAACAG-AGTTTTCTACTT-CGTAAAT-TTTTTCG-
** ** *
38987 AGGGATTTTT-TATGGGTTTAAAATTTTTAAAATTTGTCAAATATTATTATTTAATT-CATTGTA
61 -GGGATTTTTCT-T-GGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT-ATTCCA-TATA
* ** *
39050 AATCAATTTTCAAAAATTCATTCATTTTCATGGGTTTTCAAATT
121 AATCATTTTTCAAAAATTCATTCATTTTCATTAGTTTTTAAATT
*
39094 TGTTT-CTTGATATTTTCTTGTTTTCGAAAAACAGAGTTTTCTACTTCGTAAATTTTTTCGGGAG
1 T-TTTCCTTGAAATTTTCTTGTTTTCGAAAAACAGAGTTTTCTACTTCGTAAATTTTTTCGGG-G
* *
39158 AATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATAATAAATC-T
64 -ATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTCCAT-ATAAATCAT
*
39222 GTTTTGAAAAATTCATTCATTTTCATTAGTTTTTAAATT
127 -TTTTCAAAAATTCATTCATTTTCATTAGTTTTTAAATT
* * * * * * **
39261 TTTTCCTTGAAATTCTCCTATTTTAGAAAAACAGAGTTTTCTAGTTCGTAAA--ATTT-GGGGGG
1 TTTTCCTTGAAATTTTCTTGTTTTCGAAAAACAGAGTTTTCTACTTCGTAAATTTTTTCGGGGAT
* *
39323 GTTTCTTGGTTTTTAATTTTTAAAATCCATCAAATATTATTATTTATTCCATATTAAATCATTTT
66 TTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTCCATA-TAAATCATTTT
* * *
39388 TTAAAAATTCCTTCATTTTCATTAGTTTTTGAATT
130 TCAAAAATTCATTCATTTTCATTAGTTTTTAAATT
* * * * *
39423 TTTTCCTTGAAATTTTTTTGTTTTCGAAATAC-GAAGTTTTTTACTCCATAAATTTTTTCGGGGG
1 TTTTCCTTGAAATTTTCTTGTTTTCGAAAAACAG-AGTTTTCTACTTCGTAAATTTTTTC--GGG
* * *
39487 GATTTTTCTTGGTTTTTAATTTTCAAAATTCATAAAATATCATTATTTATTCCATACTAAATCAT
63 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTCCATA-TAAATCAT
* **
39552 TTTTCAAAAATTCCTTCATTTTCATTAGTTTTTGCATT
127 TTTTCAAAAATTCATTCATTTTCATTAGTTTTTAAATT
* * * * * *
39590 TTTT--TTAAAATTCTTC-T-TTTTCTTAAAAACTGAGTTTTCTA-TTCTATAAATATTTTCGGA
1 TTTTCCTTGAAATT-TTCTTGTTTTC-GAAAAACAGAGTTTTCTACTTC-GTAAATTTTTTCGGG
* **** * * *
39650 GA-ATTT-TTGGTCCAAAATTTTTAAAATGCATCTAATATTTTTATTTA
63 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTA
39697 ACTACCATTA
Statistics
Matches: 507, Mismatches: 73, Indels: 54
0.80 0.12 0.09
Matches are distributed among these distances:
161 33 0.07
162 132 0.26
163 6 0.01
164 13 0.03
165 35 0.07
166 12 0.02
167 223 0.44
168 36 0.07
169 14 0.03
170 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (164 bp):
TTTTCCTTGAAATTTTCTTGTTTTCGAAAAACAGAGTTTTCTACTTCGTAAATTTTTTCGGGGAT
TTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTCCATATAAATCATTTTT
CAAAAATTCATTCATTTTCATTAGTTTTTAAATT
Found at i:39734 original size:329 final size:326
Alignment explanation
Indices: 39006--39753 Score: 791
Period size: 329 Copynumber: 2.3 Consensus size: 326
38996 TTATGGGTTT
*** * * * *
39006 AAAATTTTTAAAATTTGTCAAATATTATTATTTA-ATTCATTGTAAATCAAT-TTTCAAAAATTC
1 AAAATTTTTAAAATCCATCAAATATTATTATTTATA-CCAAT-TAAATC-ATGTTTTAAAAATTA
** ** *
39069 ATTCATTTTCATGGGTTTTCAAATTTGTTTCTTGATATTTTCTTGTTTTCGAAAAACAGAGTTTT
63 ATTCATTTTCATTAGTTTTTGAATTT-TTTCTTGAAATTTTCTTGTTTTCGAAAAACAGAGTTTT
* * * * *
39134 CTACTTCGTAAATTTTTTCGGGAGAATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATT
127 CTACTCCATAAATTTTTTCGGGAGAATTTTTCTTAGTTTTTAATTTTCAAAATTCATAAAATATC
* *
39199 ATTATTTATTTCATAATAAATCTGTTTTGAAAAATTCATTCATTTTCATTAGTTTTTAAATTTTT
192 ATTATTTATTCCATAATAAATCTGTTTTCAAAAATTCATTCATTTTCATTAGTTTTTAAATTTTT
* * * * **
39264 TCCTTGAAATTCTCCTATTTTAGAAAAACAGAGTTTTCTAGTTCGTAAAATTTGGGGGGGTTTCT
257 T-CTTAAAATTCTCCTATTTTAGAAAAACAGAGTTTTCTAGTTCATAAAATTTCGGAGAATTTCT
**
39329 TGGTTT
321 TGGTCC
** * * **
39335 TTAATTTTTAAAATCCATCAAATATTATTATTTATTCCATATTAAATCATTTTTTAAAAATTCCT
1 AAAATTTTTAAAATCCATCAAATATTATTATTTATACCA-ATTAAATCATGTTTTAAAAATTAAT
* * *
39400 TCATTTTCATTAGTTTTTGAATTTTTTCCTTGAAATTTTTTTGTTTTCGAAATAC-GAAGTTTTT
65 TCATTTTCATTAGTTTTTGAATTTTTT-CTTGAAATTTTCTTGTTTTCGAAAAACAG-AGTTTTC
* * *
39464 TACTCCATAAATTTTTTCGGGGGGATTTTTCTTGGTTTTTAATTTTCAAAATTCATAAAATATCA
128 TACTCCATAAATTTTTTCGGGAGAATTTTTCTTAGTTTTTAATTTTCAAAATTCATAAAATATCA
* * **
39529 TTATTTATTCCATACTAAATCAT-TTTTCAAAAATTCCTTCATTTTCATTAGTTTTTGCATTTTT
193 TTATTTATTCCATAATAAATC-TGTTTTCAAAAATTCATTCATTTTCATTAGTTTTTAAATTTTT
* ** *
39593 T-TTAAAATTCTTCT-TTTTCTTAAAAACTGAGTTTTCTA-TTCTATAAATATTTTCGGAGAATT
257 TCTTAAAATTCTCCTATTTT-AGAAAAACAGAGTTTTCTAGTTC-ATAAA-A-TTTCGGAGAATT
39655 T-TTGGTCC
318 TCTTGGTCC
* * * *
39663 AAAATTTTTAAAATGCATCTAATATTTTTATTTAACTACC-ATTAATTCA-GTTTTAAGAAATTT
1 AAAATTTTTAAAATCCATCAAATATTATTATTT-A-TACCAATTAAATCATGTTTTAA-AAA-TT
*
39726 AATTCA-TTTCATTA-ATTTTGAATTTTTT
62 AATTCATTTTCATTAGTTTTTGAATTTTTT
39754 TGTACATATT
Statistics
Matches: 350, Mismatches: 55, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
326 7 0.02
327 50 0.14
328 59 0.17
329 229 0.65
330 5 0.01
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.50
Consensus pattern (326 bp):
AAAATTTTTAAAATCCATCAAATATTATTATTTATACCAATTAAATCATGTTTTAAAAATTAATT
CATTTTCATTAGTTTTTGAATTTTTTCTTGAAATTTTCTTGTTTTCGAAAAACAGAGTTTTCTAC
TCCATAAATTTTTTCGGGAGAATTTTTCTTAGTTTTTAATTTTCAAAATTCATAAAATATCATTA
TTTATTCCATAATAAATCTGTTTTCAAAAATTCATTCATTTTCATTAGTTTTTAAATTTTTTCTT
AAAATTCTCCTATTTTAGAAAAACAGAGTTTTCTAGTTCATAAAATTTCGGAGAATTTCTTGGTC
C
Found at i:43431 original size:27 final size:27
Alignment explanation
Indices: 43401--43462 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
43391 TTGAATAATA
*
43401 ATTAAATATTACTAAAATTATATTTAT
1 ATTAAATATTACTAAAATTATAATTAT
* * *
43428 ATTAAAAATTATTGAAATTATAATTAT
1 ATTAAATATTACTAAAATTATAATTAT
*
43455 ATCAAATA
1 ATTAAATA
43463 ATAAACTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (27 bp):
ATTAAATATTACTAAAATTATAATTAT
Found at i:43436 original size:29 final size:28
Alignment explanation
Indices: 43404--43638 Score: 116
Period size: 29 Copynumber: 8.1 Consensus size: 28
43394 AATAATAATT
43404 AAATATTACTAAAATTATATTTATATT-A
1 AAATATTA-TAAAATTATATTTATATTAA
* *
43432 AAA-ATTATTGAAATTATAATTATATCAAATAA
1 AAATATTA-TAAAATTAT-ATT-TAT--ATTAA
*
43464 TAAACTATAGATAAAATTATATTTATATTTAA
1 -AAA-TAT-TATAAAATTATATTTATA-TTAA
*
43496 CAATAATTA-AAAATTATATGCTTATATTAA
1 AAAT-ATTATAAAATTATAT--TTATATTAA
*
43526 AAGA-ATTATTAAAATTATATTTATA-AAA
1 AA-ATATTA-TAAAATTATATTTATATTAA
* * *
43554 AAATATAAATTAAAA-TATACGTTATCTTAA
1 AAATAT-TA-TAAAATTATA-TTTATATTAA
43584 ATAATAATTA-AAAATTATA-TT-TATTAA
1 A-AAT-ATTATAAAATTATATTTATATTAA
* *
43611 AAATA--A-AAAAATATATCTATATTAA
1 AAATATTATAAAATTATATTTATATTAA
43636 AAA
1 AAA
43639 ATAATATTTA
Statistics
Matches: 164, Mismatches: 18, Indels: 53
0.70 0.08 0.23
Matches are distributed among these distances:
23 9 0.05
24 1 0.01
25 10 0.06
26 3 0.02
27 19 0.12
28 18 0.11
29 37 0.23
30 14 0.09
31 27 0.16
32 6 0.04
33 6 0.04
34 3 0.02
35 10 0.06
36 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (28 bp):
AAATATTATAAAATTATATTTATATTAA
Found at i:43569 original size:60 final size:56
Alignment explanation
Indices: 43475--43643 Score: 136
Period size: 60 Copynumber: 3.0 Consensus size: 56
43465 AAACTATAGA
** * * *
43475 TAAAATTATATTTATATTTAACAATAATTAAAAATTATATGCTTATATTAAAAGAATTAT
1 TAAAATTATATTTATA-AAAAAAATAATTAAAAA-TATACG-TTATATT-AAAGAATAAT
* *
43535 TAAAATTATATTTATAAAAAAATATAAATT-AAAATATACGTTATCTTAAATAATAAT
1 TAAAATTATATTTATAAAAAAA-AT-AATTAAAAATATACGTTATATTAAAGAATAAT
* *
43592 TAAAAATTATATTTAT--TAAAAATAA--AAAAATATA--TCTATATTAAAAAATAAT
1 T-AAAATTATATTTATAAAAAAAATAATTAAAAATATACGT-TATATTAAAGAATAAT
43644 ATTTATATTA
Statistics
Matches: 94, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
51 1 0.01
52 14 0.15
53 8 0.09
54 2 0.02
55 2 0.02
56 4 0.04
57 9 0.10
58 20 0.21
59 8 0.09
60 22 0.23
61 4 0.04
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.40
Consensus pattern (56 bp):
TAAAATTATATTTATAAAAAAAATAATTAAAAATATACGTTATATTAAAGAATAAT
Found at i:43633 original size:25 final size:23
Alignment explanation
Indices: 43593--43638 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
43583 AATAATAATT
*
43593 AAAAATTATATTTATTAAAAATA
1 AAAAAATATATTTATTAAAAATA
43616 AAAAAATATATCTATATTAAAAA
1 AAAAAATATAT-T-TATTAAAAA
43639 ATAATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 1 0.05
25 9 0.45
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAAAATATATTTATTAAAAATA
Found at i:43639 original size:18 final size:19
Alignment explanation
Indices: 43616--43655 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
43606 ATTAAAAATA
43616 AAAAAAT-ATATCTATATT
1 AAAAAATAATATCTATATT
*
43634 AAAAAATAATATTTATATT
1 AAAAAATAATATCTATATT
43653 AAA
1 AAA
43656 TAATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAATAATATCTATATT
Found at i:43644 original size:29 final size:29
Alignment explanation
Indices: 43476--43644 Score: 99
Period size: 31 Copynumber: 6.0 Consensus size: 29
43466 AACTATAGAT
* * * *
43476 AAAATTATATTTATATTTAACAATAATTA
1 AAAATTATATCTATATTAAAAAATAATAA
* *
43505 AAAATTATATGCTTATATTAAAAGAATTAT-T
1 AAAATTATAT-C-TATATTAAAA-AATAATAA
*
43536 AAAATTATAT-T-TATAAAAAAAT-ATAA
1 AAAATTATATCTATATTAAAAAATAATAA
* * * *
43562 ATTAAAATATA-CGTTATCTTAAATAATAATTA
1 A--AAATTATATC--TATATTAAAAAATAATAA
43594 AAAATTATAT-T-TATT-AAAAAT-A-AA
1 AAAATTATATCTATATTAAAAAATAATAA
43618 AAAA-TATATCTATATTAAAAAATAATA
1 AAAATTATATCTATATTAAAAAATAATA
43645 TTTATATTAA
Statistics
Matches: 107, Mismatches: 16, Indels: 35
0.68 0.10 0.22
Matches are distributed among these distances:
23 5 0.05
24 6 0.06
25 7 0.07
26 15 0.14
27 11 0.10
28 10 0.09
29 10 0.09
30 8 0.07
31 26 0.24
32 9 0.08
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAATTATATCTATATTAAAAAATAATAA
Found at i:43646 original size:42 final size:44
Alignment explanation
Indices: 43593--43680 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 44
43583 AATAATAATT
*
43593 AAAAATTATA-TT-TATTAAA-AATAAAAAAATATATCTATATTA
1 AAAAATAATATTTATATTAAATAAT-AAAAAATATATCTATATTA
* *
43635 AAAAATAATATTTATATTAAATAATTAAAAATATATTTATATTA
1 AAAAATAATATTTATATTAAATAATAAAAAATATATCTATATTA
43679 AA
1 AA
43681 TAATTTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
42 9 0.22
43 2 0.05
44 26 0.65
45 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (44 bp):
AAAAATAATATTTATATTAAATAATAAAAAATATATCTATATTA
Found at i:43651 original size:27 final size:25
Alignment explanation
Indices: 43635--43685 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
43625 ATCTATATTA
43635 AAAAATAATATTTATATTAAATAATT
1 AAAAAT-ATATTTATATTAAATAATT
43661 AAAAATATATTTATATTAAATAATT
1 AAAAATATATTTATATTAAATAATT
43686 TTTTAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AAAAATATATTTATATTAAATAATT
Found at i:43653 original size:44 final size:42
Alignment explanation
Indices: 43593--43726 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 42
43583 AATAATAATT
*
43593 AAAAATTATATTTATTAAA-AATAAAAAAATATATCTATATTA
1 AAAAATAATATTTATTAAATAAT-AAAAAATATATCTATATTA
* *
43635 AAAAATAATATTTATATTAAATAATTAAAAATATATTTATATT-
1 AAAAATAATA-TT-TATTAAATAATAAAAAATATATCTATATTA
* * *
43678 --AAATAAT-TTT-TTAAATATTATTAAAATTATATTTATATTTA
1 AAAAATAATATTTATTAAATA--ATAAAAAATATATCTATA-TTA
43719 AAAAATAA
1 AAAAATAA
43727 ATTAACAAAT
Statistics
Matches: 79, Mismatches: 4, Indels: 17
0.79 0.04 0.17
Matches are distributed among these distances:
37 7 0.09
38 1 0.01
39 19 0.24
40 2 0.03
41 7 0.09
42 9 0.11
43 8 0.10
44 23 0.29
45 3 0.04
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (42 bp):
AAAAATAATATTTATTAAATAATAAAAAATATATCTATATTA
Found at i:43656 original size:16 final size:15
Alignment explanation
Indices: 43637--43695 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 15
43627 CTATATTAAA
43637 AAATAATATTTATATT
1 AAAT-ATATTTATATT
43653 AAATA-A-TTA-A--
1 AAATATATTTATATT
43663 AAATATATTTATATT
1 AAATATATTTATATT
43678 AAATA-ATTT-T-TT
1 AAATATATTTATATT
43690 AAATAT
1 AAATAT
43696 TATTAAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
10 5 0.14
11 1 0.03
12 11 0.30
13 5 0.14
14 5 0.14
15 6 0.16
16 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATATATTTATATT
Found at i:43696 original size:25 final size:24
Alignment explanation
Indices: 43586--43685 Score: 88
Period size: 25 Copynumber: 4.3 Consensus size: 24
43576 TATCTTAAAT
*
43586 AATAATTAAAAATTATATT-TATTA
1 AATAATTAAAAAATAT-TTATATTA
*
43610 AA-AATAAAAAAATATATCTATATT-
1 AATAATTAAAAAATAT-T-TATATTA
*
43634 -A-AA--AAATAATATTTATATTA
1 AATAATTAAAAAATATTTATATTA
43654 AATAATTAAAAATATATTTATATTA
1 AATAATTAAAAA-ATATTTATATTA
43679 AATAATT
1 AATAATT
43686 TTTTAAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
19 6 0.09
20 1 0.02
21 9 0.14
22 2 0.03
23 16 0.25
24 7 0.11
25 23 0.36
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (24 bp):
AATAATTAAAAAATATTTATATTA
Found at i:44179 original size:14 final size:14
Alignment explanation
Indices: 44151--44202 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
44141 AAAGAAATTT
44151 ATTAAATTATTAAAA
1 ATTAAATT-TTAAAA
44166 ATTAAATTTTAAAA
1 ATTAAATTTTAAAA
* **
44180 AATATTTTTATAAAA
1 ATTAAATTT-TAAAA
44195 ATTAAATT
1 ATTAAATT
44203 AAAAAATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTAAATTTTAAAA
Found at i:47096 original size:1 final size:1
Alignment explanation
Indices: 47090--47115 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
47080 ACAAGAACAG
47090 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
47116 GAGTAACGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:50687 original size:16 final size:17
Alignment explanation
Indices: 50651--50688 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
50641 CACCTACATT
* *
50651 TAATTATTTTGTGATGA
1 TAATAATTTTGTCATGA
50668 TAATAATTTTGTCA-GA
1 TAATAATTTTGTCATGA
50684 TAATA
1 TAATA
50689 TTACGTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (17 bp):
TAATAATTTTGTCATGA
Found at i:51363 original size:17 final size:17
Alignment explanation
Indices: 51341--51373 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
51331 TTAACACCTT
*
51341 AAATACAATTATAAAAA
1 AAATACAAATATAAAAA
51358 AAATACAAATATAAAA
1 AAATACAAATATAAAA
51374 CAAGCACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATACAAATATAAAAA
Found at i:51708 original size:23 final size:20
Alignment explanation
Indices: 51664--51702 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
51654 AGGATGCTAT
*
51664 AATAACTTTTCATTTACTAA
1 AATAACCTTTCATTTACTAA
51684 AATAACCTTTCATTTACTA
1 AATAACCTTTCATTTACTA
51703 GTAAAAGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (20 bp):
AATAACCTTTCATTTACTAA
Found at i:64446 original size:21 final size:21
Alignment explanation
Indices: 64422--64479 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
64412 TGACAAAAAA
*
64422 AAAAGTCAAAAGCAAAAGCAC
1 AAAAGTCAAAAGAAAAAGCAC
* * **
64443 AAAAATGAAAAGAAAAAGTGC
1 AAAAGTCAAAAGAAAAAGCAC
*
64464 AAAAG-CAAAATAAAAA
1 AAAAGTCAAAAGAAAAA
64480 AAAGGGAACA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.69, C:0.10, G:0.14, T:0.07
Consensus pattern (21 bp):
AAAAGTCAAAAGAAAAAGCAC
Found at i:64766 original size:13 final size:13
Alignment explanation
Indices: 64748--64773 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64738 CTAATCCTAA
64748 AAAAAAAAAAACC
1 AAAAAAAAAAACC
64761 AAAAAAAAAAACC
1 AAAAAAAAAAACC
64774 TTTTCACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAACC
Found at i:65829 original size:30 final size:32
Alignment explanation
Indices: 65789--65847 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
65779 GTACTGTGAC
*
65789 CTTTTCAAAGTCCAC-GACTCAGTGGCATTTT
1 CTTTTCAAAGTCCACAAACTCAGTGGCATTTT
*
65820 CTTTT-AAAGTCCACAAACTCTGTGGCAT
1 CTTTTCAAAGTCCACAAACTCAGTGGCAT
65848 CCTTTTAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (32 bp):
CTTTTCAAAGTCCACAAACTCAGTGGCATTTT
Found at i:66156 original size:32 final size:27
Alignment explanation
Indices: 65820--66859 Score: 1429
Period size: 27 Copynumber: 38.0 Consensus size: 27
65810 GTGGCATTTT
* *
65820 CTTTTAAAGTCCACAAACTCTGTGGCATC
1 CTTTT-AAGTCCAC-AACTCCGTGGCACC
*
65849 CTTTT-AGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
65875 CTTTTAAAGT-CACAACTCCGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
65902 CTTTTAAGTCCACAAACTCTGTGG-ACC
1 CTTTTAAGTCCAC-AACTCCGTGGCACC
65929 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
65957 CTTTTTAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
65984 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
66011 CTTTCAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66038 C-TTT-AGTCCACAACTCCGTGGCAACC
1 CTTTTAAGTCCACAACTCCGTGGC-ACC
*
66064 CTTTT-AGTCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
66090 CTTTAATAAGTCCACAACTCTGTGG-ACC
1 CTTT--TAAGTCCACAACTCCGTGGCACC
*
66118 CTTTTAAAAAGTCCACAAACTCTGTGGCAACC
1 CTTTT---AAGTCCAC-AACTCCGTGGC-ACC
*
66150 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66177 C-TTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66203 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
66230 CTTTTAAGTCCACAACTCCGTGACACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
66257 CTTTTAAAGACCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
66285 C-TTTAAGTCCACAACT-CGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66310 CTTTTAAGTCCATAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
66338 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66365 CTTTAAAGTCCACAACTGTCCCGTGCCACC
1 CTTTTAAGTCCACAAC--T-CCGTGGCACC
*
66395 CTTCTTTAGTCCACAACTTCCGTGGCACC
1 CTT-TTAAGTCCACAAC-TCCGTGGCACC
66424 CTTTTTAAGTCCACAACTCCGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
66452 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66479 C-TTTAAGTCCATAACTCCGTGGCA-T
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
66504 CTCTTTAAGTCCACAACTCTGTGGCACC
1 CT-TTTAAGTCCACAACTCCGTGGCACC
66532 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* **
66560 CTTTTTAGTCCACAACTTTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66587 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
66614 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66641 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66668 CTTTTAAGTCCATAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
66696 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66723 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* * *
66751 CTTTTTAGTCCACAACTCTGTGACACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66778 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
**
66805 CTTTTAAGTCCACAACTCCGTGGCGTC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66832 CTTTTAAATCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
66859 C
1 C
66860 ATTTCAAAGC
Statistics
Matches: 913, Mismatches: 65, Indels: 68
0.87 0.06 0.07
Matches are distributed among these distances:
25 29 0.03
26 107 0.12
27 493 0.54
28 181 0.20
29 60 0.07
30 24 0.03
31 11 0.01
32 8 0.01
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.28
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:66900 original size:32 final size:32
Alignment explanation
Indices: 66842--67381 Score: 906
Period size: 32 Copynumber: 16.8 Consensus size: 32
66832 CTTTTAAATC
* *
66842 CACAACTCTGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
66873 CACAAGTTGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
66905 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
66937 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
66969 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
67001 CACAAGTCGGTGGCAACCCATTTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCA-TTTCAAAGCCCA
67034 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
67066 CACAAGTCGGTGGCAACCCATTTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCA-TTTCAAAGCCCA
67099 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
67131 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
67163 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
67195 CACAGGTCGGTGGCAACCCA-TTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTC-AAAGCCCA
*
67227 CACAAGTAGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
**
67259 CACAAGTCGGTGGCAACCTTTTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
67291 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
67323 CGA-AAGTCGGTGGCAACCCATTTAAAAGCCCA
1 C-ACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
67355 CGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
67382 TCACCATTTT
Statistics
Matches: 483, Mismatches: 19, Indels: 13
0.94 0.04 0.03
Matches are distributed among these distances:
31 14 0.03
32 401 0.83
33 68 0.14
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:67461 original size:45 final size:47
Alignment explanation
Indices: 67402--67532 Score: 133
Period size: 45 Copynumber: 2.8 Consensus size: 47
67392 TGTCATCTTA
* * *
67402 AAGTCCGATATCGCTGGCCTTGAATCAGCATATTGG-CACCTTT-CT
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCCACCTTTCCT
* *
67447 AAGTCCAATGTCGCTGGCCTTGAGTCAGCACATTGGTCCACTTTTCCCT
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG-CCACCTTT-CCT
* * * *
67496 TAGTCCAATGTCGTTGACCTTGAAAT-GGCACATTGGC
1 AAGTCCAATGTCGCTGGCCTTG-AATCAGCACATTGGC
67533 ACTCCTCTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
45 32 0.45
47 6 0.08
48 1 0.01
49 30 0.42
50 2 0.03
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (47 bp):
AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCCACCTTTCCT
Found at i:70718 original size:96 final size:96
Alignment explanation
Indices: 70554--70797 Score: 470
Period size: 96 Copynumber: 2.5 Consensus size: 96
70544 TATTTGATTG
70554 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
1 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
70619 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
66 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
70650 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
1 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
70715 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
66 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
* *
70746 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTAGGAGTATCCCCGA
1 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGA
70798 TGAATAAAAA
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 146 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (96 bp):
AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
AGTAAAAATAAGAATTATCTTTGGCAAGTTT
Found at i:72085 original size:24 final size:24
Alignment explanation
Indices: 72056--72106 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
72046 TGGACATGTT
72056 AAAAATGCATGAAACATAATAAAA
1 AAAAATGCATGAAACATAATAAAA
72080 AAAAATGCATGAAACATAATAAAA
1 AAAAATGCATGAAACATAATAAAA
72104 AAA
1 AAA
72107 TGCATGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.16
Consensus pattern (24 bp):
AAAAATGCATGAAACATAATAAAA
Found at i:72103 original size:22 final size:23
Alignment explanation
Indices: 72056--72112 Score: 98
Period size: 24 Copynumber: 2.5 Consensus size: 23
72046 TGGACATGTT
72056 AAAAATGCATGAAACATAATAAAA
1 AAAAATGCATGAAACATAAT-AAA
72080 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
72102 AAAAATGCATG
1 AAAAATGCATG
72113 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 13 0.39
24 20 0.61
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:73067 original size:20 final size:20
Alignment explanation
Indices: 73020--73094 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
73010 AAAAAGACAT
*
73020 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
73039 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
73060 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
73080 AATGTATCGATACAT
1 AATGTATCGATACAT
73095 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:73088 original size:40 final size:39
Alignment explanation
Indices: 73017--73094 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
73007 GGTAAAAAGA
* *
73017 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
73056 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
73095 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:73805 original size:28 final size:28
Alignment explanation
Indices: 73691--74353 Score: 653
Period size: 28 Copynumber: 22.9 Consensus size: 28
73681 TGAAAAAAGT
* *
73691 TGCCACTGACACATGTGGGCTTTGAAAAGA
1 TGCCACTGACTC--GTGGGCTTTGAAAGGA
** * * *
73721 GTGTTACTGACTTGCGTGGGCATTAAAAGGG
1 -TGCCACTGAC-T-CGTGGGCTTTGAAAGGA
73752 TGCCACTGACTTGCGTGGGCTTTGAAAGGA
1 TGCCACTGAC-T-CGTGGGCTTTGAAAGGA
73782 TGCCACTGACTCGTGGGCTTTGAAA-GA
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
*
73809 GTGCCACTGACTTGTGGGCTTTGAAAGG-
1 -TGCCACTGACTCGTGGGCTTTGAAAGGA
73837 TGCCACTGACTCGTGGGCTTTGAAAAGG-
1 TGCCACTGACTCGTGGGCTTTG-AAAGGA
* *
73865 TACCACTGACTCGTGGGC-TTGAAAGGG
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
*
73892 TGCCACTGACTTGTGGGCTTTGAAA-GA
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
73919 GTGCCACTGACTCGTGGGCTTTGAAAAGG-
1 -TGCCACTGACTCGTGGGCTTTG-AAAGGA
73948 TGCCACTGACTTGCGTGGGCTTTGAAAGGA
1 TGCCACTGAC-T-CGTGGGCTTTGAAAGGA
* *
73978 GTGCCACTGACTTGTGTGGGCTTTGAAAGGG
1 -TGCCACTGAC-T-CGTGGGCTTTGAAAGGA
*
74009 TGCCACTAACTCGTGGGCTTTGAAAGGA
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
*
74037 TGCCACTGACTTGTGGGCTTTGAAA-GA
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
74064 TGCCACTGACTCGTGGGCTTTGAAAAGG-
1 TGCCACTGACTCGTGGGCTTTG-AAAGGA
* *
74092 TACCACTGACTCGTGGGC-TTGAAAGGG
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
*
74119 TGCCACTGACTTGTGGGCTTTGAAA-GA
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
*
74146 GTGCCACTGACTCGTGGGCTTTGAAAAGA
1 -TGCCACTGACTCGTGGGCTTTGAAAGGA
* * * *
74175 GTGCCACTAACTTGTGGGCTTTAAAAGGG
1 -TGCCACTGACTCGTGGGCTTTGAAAGGA
* *
74204 TGCCACTAACTTGCGTGGGCTTTGAAAGGGG
1 TGCCACTGAC-T-CGTGGGCTTTGAAA-GGA
* *
74235 TGCCACTGACTTGTGGGCTTTGAAAGGG
1 TGCCACTGACTCGTGGGCTTTGAAAGGA
* * *
74263 TGCCACCGACTTGTGTGGGCTTTGAAAAGTGT
1 TGCCACTGAC-T-CGTGGGCTTTG-AAAG-GA
* * *
74295 TGCCACCGACTTGTGTGGGCTTTGAAATGGGT
1 TGCCACTGAC-T-CGTGGGCTTTGAAA--GGA
* *
74327 TGCCACCGACTTGTATGGGCTTTGAAA
1 TGCCACTGACTCG--TGGGCTTTGAAA
74354 TGGGTTGCCA
Statistics
Matches: 558, Mismatches: 43, Indels: 61
0.84 0.06 0.09
Matches are distributed among these distances:
26 10 0.02
27 86 0.15
28 207 0.37
29 54 0.10
30 82 0.15
31 68 0.12
32 49 0.09
33 2 0.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.27
Consensus pattern (28 bp):
TGCCACTGACTCGTGGGCTTTGAAAGGA
Found at i:73857 original size:55 final size:55
Alignment explanation
Indices: 73676--74353 Score: 700
Period size: 55 Copynumber: 11.7 Consensus size: 55
73666 AGCTTGTGTA
* * **
73676 GGCTTTGAAAAAAGTTGCCACTGACACATGTGGGCTTTGAAAAGAGTGTTACTGACTTGCGTG
1 GGCTTTG-AAAGAG-TGCCACTG--ACTTGTGGGCTTTG-AAAG-GTGCCACTGAC-T-CGTG
* * *
73739 GGCATTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGATGCCACTGACTCGTG
1 GGCTTTGAAAGAGTGCCACTGACTT--GTGGGCTTTGAAAGG-TGCCACTGACTCGTG
73797 GGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGTGCCACTGACTCGTG
1 GGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGTGCCACTGACTCGTG
* * *
73852 GGCTTTGAAA-AGGTACCACTGACTCGTGGGC-TTGAAAGGGTGCCACTGACTTGTG
1 GGCTTTGAAAGA-GTGCCACTGACTTGTGGGCTTTGAAA-GGTGCCACTGACTCGTG
*
73907 GGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGGTGCCACTGACTTGCGTG
1 GGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGTGCCACTGAC-T-CGTG
*
73965 GGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTGAAAGGGTGCCACTAACTCGTG
1 GGCTTTGAAA-GAGTGCCACTGAC-T-TGTGGGCTTTGAAA-GGTGCCACTGACTCGTG
*
74024 GGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGATGCCACTGACTCGTG
1 GGCTTTGAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGGTGCCACTGACTCGTG
* * *
74079 GGCTTTGAAA-AGGTACCACTGACTCGTGGGC-TTGAAAGGGTGCCACTGACTTGTG
1 GGCTTTGAAAGA-GTGCCACTGACTTGTGGGCTTTGAAA-GGTGCCACTGACTCGTG
* * *
74134 GGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTAACTTGTG
1 GGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAG-GTGCCACTGACTCGTG
* * * *
74191 GGCTTTAAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTGACTTGTG
1 GGCTTTGAAAGAGTGCCACTGACTT--GTGGGCTTTGAAA--GGTGCCACTGACTCGTG
* * * *
74250 GGCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTGAAAAGTGTTGCCACCGACTTGTGTG
1 GGCTTTGAAAGAGTGCCACTGAC-T-TGTGGGCTTTG-AAAG-G-TGCCACTGAC-T-CGTG
* *
74312 GGCTTTGAAATGGGTTGCCACCGACTTGTATGGGCTTTGAAA
1 GGCTTTGAAA-GAG-TGCCACTGACTTG--TGGGCTTTGAAA
74354 TGGGTTGCCA
Statistics
Matches: 544, Mismatches: 34, Indels: 74
0.83 0.05 0.11
Matches are distributed among these distances:
54 13 0.02
55 170 0.31
56 51 0.09
57 45 0.08
58 54 0.10
59 88 0.16
60 31 0.06
61 41 0.08
62 20 0.04
63 12 0.02
64 19 0.03
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (55 bp):
GGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGTGCCACTGACTCGTG
Found at i:74100 original size:227 final size:227
Alignment explanation
Indices: 73658--74289 Score: 986
Period size: 227 Copynumber: 2.8 Consensus size: 227
73648 AAAAAAAAAT
* *
73658 GTGCCACT-AGCTTGTGTAGGCTTTGAAAAAAGTTGCCACTGACACATGTGGGCTTTGAAAAGAG
1 GTGCCACTGA-CTTGTG--GGCTTTG-AAAGAG-TGCCACTGACTC--GTGGGCTTTGAAAAGAG
** * *
73722 TGTTACTGACTTGCGTGGGCATTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGATGCCA
59 TGCCACTGACTTGCGTGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGGTGCCA
*
73787 CTGACTCGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGGTGCCACTGACTCGT
124 CTGACTCGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGATGCCACTGACTCGT
73851 GGGCTTTGAAAAGGTACCACTGACTCGTGGGCTTGAAAGG
188 GGGCTTTGAAAAGGTACCACTGACTCGTGGGCTTGAAAGG
73891 GTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAG-GTGCCACT
1 GTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACT
* * *
73955 GACTTGCGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTGAAAGGGTGCCACTAACT
66 GACTTGCGTGGGCTTTAAAAGG-GTGCCACTGACTTGCGTGGGCTTTGAAAGGGTGCCACTGACT
74020 CGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGATGCCACTGACTCGTGGGCTTT
130 CGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGATGCCACTGACTCGTGGGCTTT
74085 GAAAAGGTACCACTGACTCGTGGGCTTGAAAGG
195 GAAAAGGTACCACTGACTCGTGGGCTTGAAAGG
74118 GTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACT
1 GTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACT
* *
74183 AACTT--GTGGGCTTTAAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTGACT
66 GACTTGCGTGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAA-GGGTGCCACTGACT
* * *
74246 TGTGGGCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTGAAA
130 CGTGGGCTTTGAAAGGATGCCACTGAC-T-TGTGGGCTTTGAAA
74290 AGTGTTGCCA
Statistics
Matches: 374, Mismatches: 18, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
225 26 0.07
226 77 0.21
227 205 0.55
228 28 0.07
229 11 0.03
230 5 0.01
231 7 0.02
233 14 0.04
234 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (227 bp):
GTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACT
GACTTGCGTGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGGTGCCACTGACTC
GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGATGCCACTGACTCGTGGGCTTTG
AAAAGGTACCACTGACTCGTGGGCTTGAAAGG
Found at i:74386 original size:32 final size:28
Alignment explanation
Indices: 73704--74961 Score: 870
Period size: 27 Copynumber: 44.5 Consensus size: 28
73694 CACTGACACA
* **
73704 TGTGGGCTTTGAAAAGAGTGTTACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
73733 TGCGTGGGCATTAAAAGGGTGCCACTGACT
1 T--GTGGGCTTTGAAAGGGTGCCACTGACT
*
73763 TGCGTGGGCTTTGAAAGGATGCCACTGACT
1 T--GTGGGCTTTGAAAGGGTGCCACTGACT
* *
73793 CGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
73821 TGTGGGCTTTGAAA-GGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
73848 CGTGGGCTTTGAAAAGGTACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
73876 CGTGGGC-TTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
73903 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
73931 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
73959 TGCGTGGGCTTTGAAAGGAGTGCCACTGACTT
1 T--GTGGGCTTTGAAAGG-GTGCCACTGAC-T
*
73991 GTGTGGGCTTTGAAAGGGTGCCACTAACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
74020 CGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
74048 TGTGGGCTTTGAAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
74075 CGTGGGCTTTGAAAAGGTACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
74103 CGTGGGC-TTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
74130 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
74158 CGTGGGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
74187 TGTGGGCTTTAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
74215 TGCGTGGGCTTTGAAAGGGGTGCCACTGACT
1 T--GTGGGCTTTGAAA-GGGTGCCACTGACT
*
74246 TGTGGGCTTTGAAAGGGTGCCACCGACTT
1 TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* *
74275 GTGTGGGCTTTGAAAAGTGTTGCCACCGACTT
1 -TGTGGGCTTTG-AAAG-GGTGCCACTGAC-T
*
74307 GTGTGGGCTTTGAAATGGGTTGCCACCGACT
1 -TGTGGGCTTTGAAA-GGG-TGCCACTGACT
**
74338 TGTATGGGCTTTGAAATGGGTTGCCACCAACTT
1 TG--TGGGCTTTGAAA-GGG-TGCCACTGAC-T
* *
74371 GTGTGGGCTTTGAAATGGGTGCCACAGAGT
1 -TGTGGGCTTTGAAA-GGGTGCCACTGACT
** * ** * *
74401 TGTGGATTTTAAAAAAGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * *
74429 TGTGGATTTTAAAAGGGTGCCA-TGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACT-GACT
** * * *
74457 TGTGGATTTTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * ** * * *
74485 TATGGAC-TCAAAAGAGATGCCACGGAGT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* * * * *
74513 TATGGAC-TTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
74540 TGTGGAC-TTAAAAGTGTTCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74567 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74594 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74621 TGTGGAC-TTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74648 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** * *
74675 TGTGGAC-TAAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74702 TGTGGACTTTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
74730 TGTGGAC-TTAAAAGAGATGCCACGGAGT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* * * *
74758 TATGGAC-TTAAAAGGGTGCCAC-GAAGT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
* * * *
74785 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74812 TGTGGTC-TTAAAAGGGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGG-TGCCACTGACT
* * * *
74840 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
74867 TGTGGAC-TTAAAAGAGTGTCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74894 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
74921 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
74948 TGTGGGCTTT-AAAG
1 TGTGGGCTTTGAAAG
74962 AGGTAACACT
Statistics
Matches: 1102, Mismatches: 93, Indels: 70
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.00
27 428 0.39
28 383 0.35
29 52 0.05
30 91 0.08
31 64 0.06
32 79 0.07
33 2 0.00
34 2 0.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:74720 original size:273 final size:273
Alignment explanation
Indices: 74387--74952 Score: 886
Period size: 273 Copynumber: 2.1 Consensus size: 273
74377 GCTTTGAAAT
* * * *
74387 GGGTGCCACAGAGTTGTGGATTTTAAAAAAGTGCCACGGAGTTGTGGATTTTAAAAGGGTGCCAT
1 GGGTGCCACGGAGTTGTGGA-TCTAAAAAAGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCAC
* * * *
74452 GGAGTTGTGGATTTTAAAAG-GGTGCCACAGAGTTATGGACTCAAAAGAGATGCCACGGAGTTAT
65 AGAGTTGTGGA-CTTAAAAGAGATGCCACAGAGTTATGGACTCAAAAG-GATGCCACGAAGTTAT
* *
74516 GGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGTG-TTCCACGGAGTTGTGGACTTAAAA
128 GGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
* *
74580 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAG
193 GGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACAG
74645 AGTTGTGGACTTAAAA
258 AGTTGTGGACTTAAAA
*
74661 GGGTGCCACGGAGTTGTGGA-CTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCAC
1 GGGTGCCACGGAGTTGTGGATCTAAAAA-AGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCAC
* * * *
74725 AGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGAAGTTGTGG
65 AGAGTTGTGGACTTAAAAGAGATGCCACAGAGTTATGGACTCAAAAGGATGCCACGAAGTTATGG
* *
74790 ACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGG
130 ACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGG
* *
74855 GTGCCACGGAGTTGTGGACTTAAAAGAGTGTCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAG
195 GTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACAGAG
74920 TTGTGGACTTAAAA
260 TTGTGGACTTAAAA
74934 GGGTGCCACGGAGTTGTGG
1 GGGTGCCACGGAGTTGTGG
74953 GCTTTAAAGA
Statistics
Matches: 268, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
272 63 0.24
273 186 0.69
274 19 0.07
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (273 bp):
GGGTGCCACGGAGTTGTGGATCTAAAAAAGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
GAGTTGTGGACTTAAAAGAGATGCCACAGAGTTATGGACTCAAAAGGATGCCACGAAGTTATGGA
CTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGG
TGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACAGAGT
TGTGGACTTAAAA
Found at i:81194 original size:96 final size:96
Alignment explanation
Indices: 81030--81273 Score: 470
Period size: 96 Copynumber: 2.5 Consensus size: 96
81020 TTTTTGATTG
81030 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
1 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
81095 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
66 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
81126 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
1 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
81191 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
66 AGTAAAAATAAGAATTATCTTTGGCAAGTTT
* *
81222 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTAGGAGTATCCCCGA
1 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGA
81274 TGAATAAAAA
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 146 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (96 bp):
AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGACAATGATACTTTA
AGTAAAAATAAGAATTATCTTTGGCAAGTTT
Found at i:81918 original size:22 final size:22
Alignment explanation
Indices: 81890--81944 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
81880 TGGACATGTT
81890 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
*
81912 AAAAATGCATGAAACGTAATAA
1 AAAAATGCATGAAACATAATAA
81934 AAAAATGCATG
1 AAAAATGCATG
81945 GTCAAAGGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:82900 original size:20 final size:20
Alignment explanation
Indices: 82853--82927 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
82843 AAAAAGACAT
*
82853 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
82872 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
82893 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
82913 AATGTATCGATACAT
1 AATGTATCGATACAT
82928 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:82921 original size:40 final size:39
Alignment explanation
Indices: 82850--82927 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
82840 GGTAAAAAGA
* *
82850 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
82889 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
82928 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:86396 original size:45 final size:45
Alignment explanation
Indices: 86347--86433 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
86337 TATCCCACGA
* * *
86347 ATATTACCTCGCAAATACTA-CTTAGCTTTGAATAATACCTTGTGG
1 ATATTACCTCGCAAATAATATCGT-GCATTGAATAATACCTTGTGG
*
86392 ATATTACCTCGCGAATAATATCGTGCATTGAATAATACCTTG
1 ATATTACCTCGCAAATAATATCGTGCATTGAATAATACCTTG
86434 CAGATAATGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (45 bp):
ATATTACCTCGCAAATAATATCGTGCATTGAATAATACCTTGTGG
Found at i:87029 original size:15 final size:15
Alignment explanation
Indices: 86994--87091 Score: 67
Period size: 15 Copynumber: 6.7 Consensus size: 15
86984 ACTTTTGTAC
* *
86994 AAGTGCCTTTAGCAT
1 AAGTACCTTTGGCAT
* * *
87009 AGGTACCTTTGACAC
1 AAGTACCTTTGGCAT
87024 AAGTA-CTTTGGCA-
1 AAGTACCTTTGGCAT
* *
87037 CAGATA-CTTCGGCAT
1 AAG-TACCTTTGGCAT
*
87052 AAGTAGCTTTGGCAT
1 AAGTACCTTTGGCAT
* *
87067 AAGTACCTTCGACAT
1 AAGTACCTTTGGCAT
*
87082 AGGTACCTTT
1 AAGTACCTTT
87092 TGGTAGCAAT
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
13 2 0.03
14 18 0.28
15 44 0.69
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (15 bp):
AAGTACCTTTGGCAT
Found at i:87038 original size:14 final size:14
Alignment explanation
Indices: 87015--87072 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
87005 GCATAGGTAC
*
87015 CTTTGACACAAGTA
1 CTTTGGCACAAGTA
87029 CTTTGGCAC-AGATA
1 CTTTGGCACAAG-TA
* *
87043 CTTCGGCATAAGTA
1 CTTTGGCACAAGTA
*
87057 GCTTTGGCATAAGTA
1 -CTTTGGCACAAGTA
87072 C
1 C
87073 CTTCGACATA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
13 2 0.05
14 20 0.54
15 15 0.41
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
CTTTGGCACAAGTA
Found at i:89735 original size:19 final size:20
Alignment explanation
Indices: 89711--89761 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
89701 ATAATTCTTT
*
89711 ATGTATCGATACAATG-AGC
1 ATGTATCGATACAATGCAAC
* * *
89730 ATGTATTGATACATTGCAAT
1 ATGTATCGATACAATGCAAC
89750 ATGTATCGATAC
1 ATGTATCGATAC
89762 TTCTGGGCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGCAAC
Found at i:90456 original size:17 final size:17
Alignment explanation
Indices: 90436--90469 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
90426 CCTTTTTTGT
90436 TATCTCTCCCCAAAAAA
1 TATCTCTCCCCAAAAAA
90453 TATCTCTCCCCAAAAAA
1 TATCTCTCCCCAAAAAA
90470 ACTTTCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (17 bp):
TATCTCTCCCCAAAAAA
Found at i:92379 original size:13 final size:13
Alignment explanation
Indices: 92361--92397 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
92351 ATAGTGCCCT
*
92361 TGTATCCATACAA
1 TGTATCGATACAA
*
92374 TGTATCGATACAG
1 TGTATCGATACAA
92387 TGTATCGATAC
1 TGTATCGATAC
92398 TAAAATCCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:92458 original size:20 final size:20
Alignment explanation
Indices: 92433--92486 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
92423 GGTTTTTTAG
*
92433 ATGTATTGATACATCATTCA
1 ATGTATCGATACATCATTCA
92453 ATGTATCGATACATCATTCA
1 ATGTATCGATACATCATTCA
92473 ATGTATCGATACAT
1 ATGTATCGATACAT
92487 TTAGAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATCATTCA
Found at i:99502 original size:52 final size:52
Alignment explanation
Indices: 99354--99482 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
99344 CGAAATATGA
99354 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
99406 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
99458 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
99483 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:99509 original size:13 final size:13
Alignment explanation
Indices: 99491--99515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99481 CAAAGATCAG
99491 TGTATCGATACAA
1 TGTATCGATACAA
99504 TGTATCGATACA
1 TGTATCGATACA
99516 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:99601 original size:32 final size:32
Alignment explanation
Indices: 99560--99630 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
99550 AGCTTCGTAG
*
99560 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCAATACAACACTTATGTAT
* *
99592 CGATACATTGTATCAATACAACATTTTTGTAT
1 CGATACATTGTATCAATACAACACTTATGTAT
99624 CGATACA
1 CGATACA
99631 AATCGTTGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.35
Consensus pattern (32 bp):
CGATACATTGTATCAATACAACACTTATGTAT
Found at i:101818 original size:33 final size:32
Alignment explanation
Indices: 101758--101819 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
101748 CAATTCTTTA
* *
101758 TGTATCGATACAATGAGCATGTATCGATAGAT
1 TGTATCGATACAAAGAACATGTATCGATAGAT
*
101790 TGTATCGATACAAAGCAATATGTATCGATA
1 TGTATCGATACAAAG-AACATGTATCGATA
101820 CTTCTGGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATAGAT
Found at i:102195 original size:3 final size:3
Alignment explanation
Indices: 102180--102230 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
102170 TTGGAAATGC
*
102180 TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102228 TTA
1 TTA
102231 AATATAAGAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:103006 original size:21 final size:21
Alignment explanation
Indices: 102980--103056 Score: 154
Period size: 21 Copynumber: 3.7 Consensus size: 21
102970 TTTTTATCCA
102980 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
103001 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
103022 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
103043 AATGTATCGATACA
1 AATGTATCGATACA
103057 AGGTCCCAAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:103196 original size:21 final size:21
Alignment explanation
Indices: 103170--103211 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
103160 AGCTACTGCC
103170 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
103191 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
103212 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:103216 original size:13 final size:13
Alignment explanation
Indices: 103198--103223 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103188 ATTAAGGAAA
103198 TGTATCGATACAT
1 TGTATCGATACAT
103211 TGTATCGATACAT
1 TGTATCGATACAT
103224 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:105636 original size:51 final size:51
Alignment explanation
Indices: 105580--105820 Score: 331
Period size: 52 Copynumber: 4.6 Consensus size: 51
105570 TTAAGTTTCT
*
105580 CAATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
* *
105631 TAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
*
105682 CAATTTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
* * * *
105734 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
* * *
105787 TAATTTTTTCACAATCGGGGATACTCCAACCCCG
1 CAA-TTTTCCATAATCGGGGATACTCCAACCCCG
105821 TTAATCATCG
Statistics
Matches: 172, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
51 51 0.30
52 86 0.50
53 30 0.17
54 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.33
Consensus pattern (51 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
Found at i:105870 original size:28 final size:27
Alignment explanation
Indices: 105800--105874 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
105790 TTTTTTCACA
105800 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
105827 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
105853 GTCGAGGGGATACTCCAACCCC
1 ATC--GGGGATACTCCAACCCC
105875 CGGCTTTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 4 0.09
27 23 0.52
28 17 0.39
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.21
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:106006 original size:79 final size:78
Alignment explanation
Indices: 105827--106114 Score: 348
Period size: 79 Copynumber: 3.6 Consensus size: 78
105817 CCCGTTAATC
* * *
105827 ATCGGGGATACTCCAACCCCGTTATTGTCGAGGGGATACTCCAACCCCCGGCTTTATTCCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAA-CCCCGGCTTTATTTCTAAAA
105892 TATTGATTTCTCATA
65 TATT-ATTTCTCATA
*
105907 ATCGGGGATACTCCAA-CCCGTTATTTTCGAGAGGATACTCCAACCTCGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCGGCTTTATTTCTAAAAT
105971 ATTAATTTCTCATA
66 ATT-ATTTCTCATA
* * * * *
105985 ATCGGAGATACTCCAACCCCGTTATCTCCGA-AGGGATACTCCAACCCCGGTTTTATTTCCAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGA-GGATACTCCAACCCCGGCTTTATTTCTAAA-
* *
106049 CATCGATT-TTTTTCACA
64 -AT--ATTATTTCTCATA
* * * *
106066 ATCAGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCG
106115 TTACTATCTC
Statistics
Matches: 181, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
78 48 0.27
79 64 0.35
80 16 0.09
81 50 0.28
83 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCGGCTTTATTTCTAAAAT
ATTATTTCTCATA
Found at i:106147 original size:158 final size:154
Alignment explanation
Indices: 105825--106147 Score: 377
Period size: 158 Copynumber: 2.0 Consensus size: 154
105815 ACCCCGTTAA
* * *
105825 TCATCGGGGATACTCCAACCCCGTTATTGTCGAGGGGATACTCCAACCCCCGGCTTTATTCCTAA
1 TCATCGGAGATACTCCAACCCCGTTATTGCCGAAGGGATACTCCAACCCCCGGCTTTATTCC-AA
* * * * *
105890 AATATTGATTTCTCATAATCGGGGATACTCCAACCCGTTATTTTCGAGAGGATACTCCAACCTCG
65 AATATCGATTTCTCACAATCAGGGATACTCCAACCCGTTATTTTCAAGAGGATACTCCAACCTCC
* *
105955 GCTTTATTTCTAAAATATTAATTTC
130 GCTTTATCTCCAAAATATTAATTTC
*
105980 TCATAATCGGAGATACTCCAACCCCGTTATCT-CCGAAGGGATACTCCAA-CCCCGGTTTTATTT
1 TC---ATCGGAGATACTCCAACCCCGTTAT-TGCCGAAGGGATACTCCAACCCCCGGCTTTA-TT
* *
106043 CC-AAATCATCGATTTTTTTCACAATCAGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTC
61 CCAAAAT-ATCGA--TTTCTCACAATCAGGGATACTCCAACCC-GTTATTTTCAAGAGGATACTC
106107 CAACC-CCG-TTACTATCTCCAAAATATTAAATTTC
122 CAACCTCCGCTT--TATCTCCAAAATATT-AATTTC
106141 TCATCGG
1 TCATCGG
106148 GAAATATACT
Statistics
Matches: 143, Mismatches: 13, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
155 2 0.01
156 4 0.03
157 14 0.10
158 50 0.35
159 28 0.20
160 37 0.26
161 8 0.06
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (154 bp):
TCATCGGAGATACTCCAACCCCGTTATTGCCGAAGGGATACTCCAACCCCCGGCTTTATTCCAAA
ATATCGATTTCTCACAATCAGGGATACTCCAACCCGTTATTTTCAAGAGGATACTCCAACCTCCG
CTTTATCTCCAAAATATTAATTTC
Found at i:108602 original size:20 final size:21
Alignment explanation
Indices: 108559--108602 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
108549 TTAAGTATAG
*
108559 ATGTTTTTCAAGCATAATAATA
1 ATGTTTTTCAAG-ATAAAAATA
108581 ATGTTTTTCAAG-TAAAAATA
1 ATGTTTTTCAAGATAAAAATA
108601 AT
1 AT
108603 TCAAAGTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (21 bp):
ATGTTTTTCAAGATAAAAATA
Found at i:108714 original size:13 final size:13
Alignment explanation
Indices: 108696--108721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108686 CATACCCAAA
108696 TGTATCGATACAT
1 TGTATCGATACAT
108709 TGTATCGATACAT
1 TGTATCGATACAT
108722 GTTCTTGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:108821 original size:20 final size:20
Alignment explanation
Indices: 108798--108852 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
108788 GTATTGATAC
*
108798 ATTGTATCGATACATGATGA
1 ATTGTATCAATACATGATGA
* *
108818 ATTGAATCAATACATGGTGA
1 ATTGTATCAATACATGATGA
108838 ATTGTATCAATACAT
1 ATTGTATCAATACAT
108853 TGAGCCCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (20 bp):
ATTGTATCAATACATGATGA
Found at i:109333 original size:36 final size:32
Alignment explanation
Indices: 109282--109376 Score: 97
Period size: 36 Copynumber: 2.8 Consensus size: 32
109272 CTAAGTCATT
109282 GAGAGGTTCTT-TCTTAGCCTTTGAAAAAGATAAGG
1 GAGAGGTT-TTATCTTAGCC-TTGAAAAAGAT-A-G
*
109317 AGAGAGGTTTTATCTTAGCCCATG-AAAAGATAG
1 -GAGAGGTTTTATCTTAG-CCTTGAAAAAGATAG
109350 G-GAGGTTTCTATCTTAGCCTTGAAAAA
1 GAGAGGTTT-TATCTTAGCCTTGAAAAA
109377 TAATGTTGTA
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
31 11 0.21
32 13 0.25
33 1 0.02
34 1 0.02
35 9 0.17
36 16 0.30
37 2 0.04
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (32 bp):
GAGAGGTTTTATCTTAGCCTTGAAAAAGATAG
Found at i:110674 original size:12 final size:12
Alignment explanation
Indices: 110657--110681 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
110647 TAAATGGACC
110657 ATAAGAATCAAT
1 ATAAGAATCAAT
110669 ATAAGAATCAAT
1 ATAAGAATCAAT
110681 A
1 A
110682 GTAAACACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATAAGAATCAAT
Found at i:113622 original size:29 final size:29
Alignment explanation
Indices: 113589--113675 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
113579 TCATAAAACA
113589 TGTTATGAAATTTTCAGCATATTAGTTAT
1 TGTTATGAAATTTTCAGCATATTAGTTAT
* * *
113618 TGTTA-GAATATGTTCA-TATCATT--TTCCT
1 TGTTATGAA-ATTTTCAGCAT-ATTAGTT-AT
* *
113646 TGTCATAAAATTTTCAGCATATTAGTTAT
1 TGTTATGAAATTTTCAGCATATTAGTTAT
113675 T
1 T
113676 ATTAGAACAT
Statistics
Matches: 43, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
27 2 0.05
28 19 0.44
29 20 0.47
30 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.48
Consensus pattern (29 bp):
TGTTATGAAATTTTCAGCATATTAGTTAT
Found at i:113660 original size:57 final size:57
Alignment explanation
Indices: 113596--113708 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
113586 ACATGTTATG
* *
113596 AAATTTTCAGCATATTAGTTATTGTTAGAATATGTTCATATCATTTTCCTTGTCATA
1 AAATTTTCAGCATATTAGTTATTATTAGAACATGTTCATATCATTTTCCTTGTCATA
*
113653 AAATTTTCAGCATATTAGTTATTATTAGAACATGTTCATATCATTTTCCTTTTCAT
1 AAATTTTCAGCATATTAGTTATTATTAGAACATGTTCATATCATTTTCCTTGTCAT
113709 GATCAAAATG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (57 bp):
AAATTTTCAGCATATTAGTTATTATTAGAACATGTTCATATCATTTTCCTTGTCATA
Found at i:117328 original size:20 final size:20
Alignment explanation
Indices: 117305--117374 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
117295 ATACCTAGAT
117305 GTATCAATACATATTGCTTA
1 GTATCAATACATATTGCTTA
*
117325 GTATCTATACATATTGCTTA
1 GTATCAATACATATTGCTTA
* *
117345 GTATCAATACATGTT-CATA
1 GTATCAATACATATTGCTTA
*
117364 GTATCGATACA
1 GTATCAATACA
117375 CCTTGAAAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 13 0.29
20 32 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (20 bp):
GTATCAATACATATTGCTTA
Found at i:119069 original size:13 final size:13
Alignment explanation
Indices: 119051--119077 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
119041 ACATTATGCT
119051 TTGTATCGATACA
1 TTGTATCGATACA
119064 TTGTATCGATACA
1 TTGTATCGATACA
119077 T
1 T
119078 ATTCATTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:119096 original size:32 final size:33
Alignment explanation
Indices: 119032--119096 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
119022 CACACCCAAA
* *
119032 TGTATCAATACATTATGCTTTGTATCGATACAT
1 TGTATCAATACATTATGCATTGCATCGATACAT
* *
119065 TGTATCGATACA-TATTCATTGCATCGATACAT
1 TGTATCAATACATTATGCATTGCATCGATACAT
119097 GGATAATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTATCAATACATTATGCATTGCATCGATACAT
Found at i:119110 original size:20 final size:20
Alignment explanation
Indices: 119058--119117 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
119048 GCTTTGTATC
119058 GATACATTGTATCGATACAT-
1 GATA-ATTGTATCGATACATG
* *
119078 -ATTCATTGCATCGATACATG
1 GA-TAATTGTATCGATACATG
119098 GATAATTGTATCGATACATG
1 GATAATTGTATCGATACATG
119118 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 15 0.45
20 17 0.52
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (20 bp):
GATAATTGTATCGATACATG
Found at i:122407 original size:13 final size:13
Alignment explanation
Indices: 122389--122472 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
122379 AGCTTCGTAG
122389 CGATACATTGTAT
1 CGATACATTGTAT
122402 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
122421 CGATACATTGTAT
1 CGATACATTGTAT
*
122434 CGATACAACACTTATGCAT
1 CGAT---ACA--T-TGTAT
122453 CGATACATTGTAT
1 CGATACATTGTAT
122466 CGATACA
1 CGATACA
122473 AATTGTTGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
13 25 0.44
14 1 0.02
15 2 0.04
16 8 0.14
17 2 0.04
18 1 0.02
19 18 0.32
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:122421 original size:19 final size:18
Alignment explanation
Indices: 122397--122459 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
122387 AGCGATACAT
122397 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
122416 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
122429 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
122448 TGCATCGATACA
1 TGTATCGATACA
122460 TTGTATCGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
16 2 0.05
18 1 0.03
19 22 0.59
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.32
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:122430 original size:32 final size:32
Alignment explanation
Indices: 122389--122474 Score: 154
Period size: 32 Copynumber: 2.7 Consensus size: 32
122379 AGCTTCGTAG
*
122389 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGCAT
*
122421 CGATACATTGTATCGATACAACACTTATGCAT
1 CGATACATTGTATCGATACAAAACTTATGCAT
122453 CGATACATTGTATCGATACAAA
1 CGATACATTGTATCGATACAAA
122475 TTGTTGAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGCAT
Found at i:125019 original size:20 final size:21
Alignment explanation
Indices: 124980--125022 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
124970 TATTAAAAAG
124980 TTAGCTAATGAAAATAAAGAA
1 TTAGCTAATGAAAATAAAGAA
125001 TTAGCTAA-GAAAA-ACAAGAA
1 TTAGCTAATGAAAATA-AAGAA
125021 TT
1 TT
125023 TGCATGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 1 0.05
20 12 0.57
21 8 0.38
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (21 bp):
TTAGCTAATGAAAATAAAGAA
Found at i:128042 original size:329 final size:329
Alignment explanation
Indices: 127444--128101 Score: 1316
Period size: 329 Copynumber: 2.0 Consensus size: 329
127434 CTCTGAAAAG
127444 CCTTATATGGTTTAAAGCAAGCTCCTTAAGCTTGGTATGAAAGGCTTTCAAAATTTTTGATTGAA
1 CCTTATATGGTTTAAAGCAAGCTCCTTAAGCTTGGTATGAAAGGCTTTCAAAATTTTTGATTGAA
127509 AAAGGTTTTAATAGAGGAAATGTGGATAAAACTCTTTTTATTAAATCAAAAAGAAAAGACATTTT
66 AAAGGTTTTAATAGAGGAAATGTGGATAAAACTCTTTTTATTAAATCAAAAAGAAAAGACATTTT
127574 GATTGTACAAGTTTATGTAGATGACATTATTTTTGGTGATACTAATGAATCCTTGTGTCAAGAAT
131 GATTGTACAAGTTTATGTAGATGACATTATTTTTGGTGATACTAATGAATCCTTGTGTCAAGAAT
127639 TTTCTAAGTTAATGCAAGGTGAATTCGAGATGAGCATGATGGGAGAATTAGCATTCTTTTTGGGA
196 TTTCTAAGTTAATGCAAGGTGAATTCGAGATGAGCATGATGGGAGAATTAGCATTCTTTTTGGGA
127704 CTTCAAGTGAAGCAAACGAAAAACGGGATCTTCATCAATTAAGCCAAACATACAAAGGAGCTACT
261 CTTCAAGTGAAGCAAACGAAAAACGGGATCTTCATCAATTAAGCCAAACATACAAAGGAGCTACT
127769 CAAA
326 CAAA
127773 CCTTATATGGTTTAAAGCAAGCTCCTTAAGCTTGGTATGAAAGGCTTTCAAAATTTTTGATTGAA
1 CCTTATATGGTTTAAAGCAAGCTCCTTAAGCTTGGTATGAAAGGCTTTCAAAATTTTTGATTGAA
127838 AAAGGTTTTAATAGAGGAAATGTGGATAAAACTCTTTTTATTAAATCAAAAAGAAAAGACATTTT
66 AAAGGTTTTAATAGAGGAAATGTGGATAAAACTCTTTTTATTAAATCAAAAAGAAAAGACATTTT
127903 GATTGTACAAGTTTATGTAGATGACATTATTTTTGGTGATACTAATGAATCCTTGTGTCAAGAAT
131 GATTGTACAAGTTTATGTAGATGACATTATTTTTGGTGATACTAATGAATCCTTGTGTCAAGAAT
127968 TTTCTAAGTTAATGCAAGGTGAATTCGAGATGAGCATGATGGGAGAATTAGCATTCTTTTTGGGA
196 TTTCTAAGTTAATGCAAGGTGAATTCGAGATGAGCATGATGGGAGAATTAGCATTCTTTTTGGGA
128033 CTTCAAGTGAAGCAAACGAAAAACGGGATCTTCATCAATTAAGCCAAACATACAAAGGAGCTACT
261 CTTCAAGTGAAGCAAACGAAAAACGGGATCTTCATCAATTAAGCCAAACATACAAAGGAGCTACT
128098 CAAA
326 CAAA
128102 AGATTTCAAA
Statistics
Matches: 329, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
329 329 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (329 bp):
CCTTATATGGTTTAAAGCAAGCTCCTTAAGCTTGGTATGAAAGGCTTTCAAAATTTTTGATTGAA
AAAGGTTTTAATAGAGGAAATGTGGATAAAACTCTTTTTATTAAATCAAAAAGAAAAGACATTTT
GATTGTACAAGTTTATGTAGATGACATTATTTTTGGTGATACTAATGAATCCTTGTGTCAAGAAT
TTTCTAAGTTAATGCAAGGTGAATTCGAGATGAGCATGATGGGAGAATTAGCATTCTTTTTGGGA
CTTCAAGTGAAGCAAACGAAAAACGGGATCTTCATCAATTAAGCCAAACATACAAAGGAGCTACT
CAAA
Found at i:129277 original size:13 final size:13
Alignment explanation
Indices: 129259--129285 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
129249 ACAACATTCC
129259 TTGTATCGATACA
1 TTGTATCGATACA
129272 TTGTATCGATACA
1 TTGTATCGATACA
129285 T
1 T
129286 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:131797 original size:20 final size:20
Alignment explanation
Indices: 131774--131823 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
131764 CACCTAGATG
*
131774 TATCGATACATTATGCTTTA
1 TATCGATACATTATGCATTA
* *
131794 TATCGATACA-TATTCATTG
1 TATCGATACATTATGCATTA
131813 TATCGATACAT
1 TATCGATACAT
131824 GGACAATTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (20 bp):
TATCGATACATTATGCATTA
Found at i:131898 original size:20 final size:20
Alignment explanation
Indices: 131873--131926 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
131863 CTACCACTGT
* *
131873 TTGTATCAATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
*
131893 TTGTATCGATAGATGATGAA
1 TTGTATCGATACATGATGAA
131913 TTGTATCGATACAT
1 TTGTATCGATACAT
131927 TGCCTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:132969 original size:3 final size:3
Alignment explanation
Indices: 132961--132994 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
132951 TCAACCATCA
*
132961 ATG ATG ATG AAG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
132995 AGTTGACTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.29
Consensus pattern (3 bp):
ATG
Found at i:139535 original size:20 final size:21
Alignment explanation
Indices: 139506--139546 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
139496 GAAGAGTATT
*
139506 AAAAATTTTATTAAGGGGGAG
1 AAAAATTTTATTAAGAGGGAG
139527 AAAAA-TTTATTAAGAGGGAG
1 AAAAATTTTATTAAGAGGGAG
139547 TACTAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (21 bp):
AAAAATTTTATTAAGAGGGAG
Found at i:140225 original size:13 final size:13
Alignment explanation
Indices: 140207--140231 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
140197 ATATTGCTTA
140207 GTATCGATACATT
1 GTATCGATACATT
140220 GTATCGATACAT
1 GTATCGATACAT
140232 GTTCATAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:140244 original size:19 final size:19
Alignment explanation
Indices: 140220--140268 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
140210 TCGATACATT
140220 GTATCGATACATGTTCATA
1 GTATCGATACATGTTCATA
*
140239 GTATCGATACATGTTTATA
1 GTATCGATACATGTTCATA
*
140258 GTATTGATACA
1 GTATCGATACA
140269 CCTTGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (19 bp):
GTATCGATACATGTTCATA
Found at i:140246 original size:32 final size:33
Alignment explanation
Indices: 140186--140250 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
140176 CACACCCAGA
*
140186 TGTATCGATACATATTGCTTAGTATCGATACAT
1 TGTATCGATACATATTGCATAGTATCGATACAT
*
140219 TGTATCGATACATGTT-CATAGTATCGATACAT
1 TGTATCGATACATATTGCATAGTATCGATACAT
140251 GTTTATAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATATTGCATAGTATCGATACAT
Found at i:141265 original size:13 final size:13
Alignment explanation
Indices: 141242--141275 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
141232 TTAGTAAAAA
141242 TAAAT-ATTTATT
1 TAAATAATTTATT
141254 TAAATAATTTATT
1 TAAATAATTTATT
*
141267 TTAATAATT
1 TAAATAATT
141276 AAAATAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAATAATTTATT
Found at i:141458 original size:21 final size:21
Alignment explanation
Indices: 141434--141502 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
141424 TATTTTTATA
141434 ATTAATTTATTCTTGTTAATT
1 ATTAATTTATTCTTGTTAATT
** * * * *
141455 ATTAAAATGAAGTATT-TCAATA
1 ATT--AATTTATTCTTGTTAATT
141477 ATTAATTTATTCTTGTTAATT
1 ATTAATTTATTCTTGTTAATT
141498 ATTAA
1 ATTAA
141503 AATGAAGTAT
Statistics
Matches: 33, Mismatches: 12, Indels: 6
0.65 0.24 0.12
Matches are distributed among these distances:
20 7 0.21
21 12 0.36
22 7 0.21
23 7 0.21
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (21 bp):
ATTAATTTATTCTTGTTAATT
Found at i:141471 original size:43 final size:43
Alignment explanation
Indices: 141431--141514 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
141421 TAATATTTTT
141431 ATAATTAATTTATTCTTGTTAATTATTAAAATGAAGTATTTCA
1 ATAATTAATTTATTCTTGTTAATTATTAAAATGAAGTATTTCA
141474 ATAATTAATTTATTCTTGTTAATTATTAAAATGAAGTATTT
1 ATAATTAATTTATTCTTGTTAATTATTAAAATGAAGTATTT
141515 GAGGGAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (43 bp):
ATAATTAATTTATTCTTGTTAATTATTAAAATGAAGTATTTCA
Found at i:144950 original size:24 final size:23
Alignment explanation
Indices: 144892--144959 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 23
144882 GATTATATAT
*
144892 TTATTTATTTTAT-AATA-AAAA
1 TTATTTATATTATAAATATAAAA
*
144913 TTATATAGTA-TATAAATATAAAA
1 TTATTTA-TATTATAAATATAAAA
144936 TTAATTTATATTATATAAT-TAAAA
1 TT-ATTTATATTATA-AATATAAAA
144960 ATCAATCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
21 9 0.24
22 5 0.13
23 8 0.21
24 13 0.34
25 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (23 bp):
TTATTTATATTATAAATATAAAA
Found at i:144952 original size:26 final size:26
Alignment explanation
Indices: 144911--144961 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
144901 TTATAATAAA
144911 AATTATATAGTATATAAATATAAAATT
1 AATTATATAGTATATAAATA-AAAATT
* *
144938 AATT-TATATTATATAATTAAAAAT
1 AATTATATAGTATATAAATAAAAAT
144962 CAATCAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 13 0.59
27 4 0.18
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AATTATATAGTATATAAATAAAAATT
Found at i:147156 original size:14 final size:14
Alignment explanation
Indices: 147137--147163 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
147127 TTGCCGCTGC
147137 CACTGACACTGCCA
1 CACTGACACTGCCA
147151 CACTGACACTGCC
1 CACTGACACTGCC
147164 CCAACGTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.44, G:0.15, T:0.15
Consensus pattern (14 bp):
CACTGACACTGCCA
Found at i:149794 original size:2 final size:2
Alignment explanation
Indices: 149781--149820 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
149771 GCGAAACGCA
*
149781 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149821 GCATATTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:150463 original size:28 final size:25
Alignment explanation
Indices: 150432--150494 Score: 65
Period size: 28 Copynumber: 2.4 Consensus size: 25
150422 TTCAATATGA
*
150432 TATTTTTAAAAAATTATAATCAATGAAT
1 TATTTTTAAAAAATT-TAAT-AA-AAAT
*
150460 TATTTTT-TAAAATTTAATAAAAAT
1 TATTTTTAAAAAATTTAATAAAAAT
150484 TATATTTTAAA
1 TAT-TTTTAAA
150495 TAATAATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 6 0.20
25 6 0.20
26 5 0.17
27 6 0.20
28 7 0.23
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
TATTTTTAAAAAATTTAATAAAAAT
Found at i:150501 original size:24 final size:26
Alignment explanation
Indices: 150457--150510 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 26
150447 ATAATCAATG
* *
150457 AATTATTTTTTAAAATTTAA-TAAA-
1 AATTATATTTTAAAATATAATTAAAT
150481 AATTATATTTT-AAATAATAATTAAAT
1 AATTATATTTTAAAAT-ATAATTAAAT
150507 AATT
1 AATT
150511 TTTAATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 4 0.16
24 13 0.52
25 4 0.16
26 4 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
AATTATATTTTAAAATATAATTAAAT
Found at i:151180 original size:16 final size:16
Alignment explanation
Indices: 151159--151198 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
151149 ACTTAAAAAT
*
151159 TATTTTTTAATTTTAA
1 TATTTTTTAATTATAA
*
151175 TATTTTTAAATTATAA
1 TATTTTTTAATTATAA
151191 TATTTTTT
1 TATTTTTT
151199 TTGAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTTTAATTATAA
Found at i:151268 original size:20 final size:20
Alignment explanation
Indices: 151243--151280 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
151233 GACACAATAA
*
151243 ATTTTAATTTTATTTAAAAT
1 ATTTTAATTTTATATAAAAT
*
151263 ATTTTATTTTTATATAAA
1 ATTTTAATTTTATATAAA
151281 TTTTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTTAATTTTATATAAAAT
Found at i:151285 original size:17 final size:18
Alignment explanation
Indices: 151239--151291 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
151229 TATAGACACA
*
151239 ATAAATTTTAATTTTATTT
1 ATAAATTTT-ATTTTATAT
*
151258 AAAATATTTTATTTT-TAT
1 ATAA-ATTTTATTTTATAT
151276 ATAAATTTTATTTTAT
1 ATAAATTTTATTTTAT
151292 TAATAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 10 0.34
18 6 0.21
19 8 0.28
20 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATAAATTTTATTTTATAT
Found at i:151299 original size:17 final size:17
Alignment explanation
Indices: 151242--151300 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
151232 AGACACAATA
*
151242 AATTTTAATTTTATTTAAA
1 AATTTT-ATTTTA-TTAAT
151261 ATATTTTA-TTT-TTATAT
1 A-ATTTTATTTTATTA-AT
151278 AAATTTTATTTTATTAAT
1 -AATTTTATTTTATTAAT
151296 AATTT
1 AATTT
151301 AATATTATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
16 3 0.09
17 12 0.35
18 9 0.26
19 5 0.15
20 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
AATTTTATTTTATTAAT
Found at i:151351 original size:19 final size:19
Alignment explanation
Indices: 151329--151367 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
151319 ATTTATATCC
*
151329 TATTTATAATATTT-TTTAT
1 TATTTAAAAT-TTTATTTAT
151348 TATTTAAAATTTTATTTAT
1 TATTTAAAATTTTATTTAT
151367 T
1 T
151368 TGTTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTTAAAATTTTATTTAT
Found at i:154143 original size:4 final size:4
Alignment explanation
Indices: 154134--154165 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
154124 ATTTATACAT
154134 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
154166 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:156696 original size:2 final size:2
Alignment explanation
Indices: 156689--156722 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
156679 ATGGTGGATG
156689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
156723 TTTCAGGTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160946 original size:29 final size:29
Alignment explanation
Indices: 160883--160946 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
160873 ATATACATAG
* *
160883 TAACTCTTATTTCATAAATATAAGTATTC
1 TAACTTTTATTCCATAAATATAAGTATTC
160912 TAACTTTTATTCCATAAATATAAGTATTC
1 TAACTTTTATTCCATAAATATAAGTATTC
160941 TAACTT
1 TAACTT
160947 CTTTCCTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.38, C:0.14, G:0.03, T:0.45
Consensus pattern (29 bp):
TAACTTTTATTCCATAAATATAAGTATTC
Found at i:165017 original size:18 final size:18
Alignment explanation
Indices: 164994--165030 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
164984 TTCTACATAA
164994 TTAAATTCTTAATTGGAT
1 TTAAATTCTTAATTGGAT
*
165012 TTAAATTTTTAATTGGAT
1 TTAAATTCTTAATTGGAT
165030 T
1 T
165031 CATCACATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.54
Consensus pattern (18 bp):
TTAAATTCTTAATTGGAT
Found at i:165214 original size:28 final size:28
Alignment explanation
Indices: 165177--165243 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
165167 TCCTTATGGT
165177 ATTTTAATTAGAATTTTA-CATAAT-T-AA
1 ATTTTAATTA-AATTTTATCAT-ATGTAAA
165204 ATTTGTAATTAAATTTTATCATATGTAAA
1 ATTT-TAATTAAATTTTATCATATGTAAA
165233 ATTTTAATTAA
1 ATTTTAATTAA
165244 CTCTTTGAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
27 13 0.36
28 17 0.47
29 6 0.17
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (28 bp):
ATTTTAATTAAATTTTATCATATGTAAA
Found at i:173169 original size:34 final size:35
Alignment explanation
Indices: 173131--173197 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
173121 CCTTACAACA
173131 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
173165 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
173198 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:176636 original size:84 final size:84
Alignment explanation
Indices: 176481--176645 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
176471 CATTTTCCAC
* * * *
176481 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
176546 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
176565 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
176627 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
176646 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:178712 original size:13 final size:13
Alignment explanation
Indices: 178694--178719 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
178684 CAATTTTTTG
178694 TGTATCGATACAT
1 TGTATCGATACAT
178707 TGTATCGATACAT
1 TGTATCGATACAT
178720 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:178731 original size:32 final size:33
Alignment explanation
Indices: 178674--178737 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
178664 TACAAGCCAA
**
178674 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
178707 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
178738 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Done.