genome.fa.s1834.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1834
Parameters: 2 7 7 80 10 50 1000
Length:  246159

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180599--180670	20	3.5	20	78	1	72	38	13	15	31	1.87
184433--184497	15	4.4	15	68	1	51	26	18	27	27	1.98
184432--184501	30	2.4	29	78	2	77	28	18	27	25	1.98
185080--185112	17	1.9	17	100	0	66	27	12	24	36	1.91
185499--185537	15	2.4	15	87	12	51	76	0	7	15	0.99
185898--186084	106	1.8	101	83	8	250	42	3	8	44	1.52
187035--187060	13	2.0	13	100	0	52	38	15	15	30	1.88
189277--189321	21	2.1	21	84	8	56	53	4	20	22	1.63
191160--191224	15	4.4	15	68	1	51	26	18	27	27	1.98
191159--191228	30	2.4	29	78	2	77	28	18	27	25	1.98
191807--191839	17	1.9	17	100	0	66	27	12	24	36	1.91
192228--192266	15	2.4	15	87	12	51	76	0	7	15	0.99
192626--192812	106	1.8	101	83	8	250	42	3	8	44	1.52
193763--193788	13	2.0	13	100	0	52	38	15	15	30	1.88
196005--196049	21	2.1	21	84	8	56	53	4	20	22	1.63
197853--197883	15	2.1	15	93	0	53	48	16	22	12	1.80
199938--199976	13	3.0	13	100	0	78	30	15	15	38	1.88
202127--202198	20	3.7	19	79	9	65	34	18	11	36	1.86
202144--202197	19	2.8	20	85	2	74	35	18	11	35	1.86
202246--202272	13	2.1	13	100	0	54	29	14	14	40	1.86
202221--202488	125	2.1	125	95	0	482	36	12	15	35	1.86
202371--202396	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202349--202413	33	2.0	33	87	6	96	35	12	20	32	1.89
204153--204202	14	3.6	14	74	15	50	64	4	2	30	1.23
204354--204808	153	3.0	151	81	6	524	53	8	7	31	1.57
204990--205031	14	3.0	14	82	6	50	57	2	4	35	1.33
205958--206138	43	4.2	43	79	5	170	36	18	24	19	1.95
206456--206500	21	2.1	22	87	4	65	20	11	11	57	1.63
209766--209790	13	1.9	13	100	0	50	32	16	16	36	1.90
209778--209830	20	2.6	21	84	3	72	43	15	15	26	1.85
209862--209929	33	2.1	32	86	2	91	33	20	14	30	1.93
215177--215202	8	3.2	8	100	0	52	15	0	23	61	1.33
215846--215893	20	2.2	21	85	10	62	25	45	20	8	1.79
217861--217885	13	1.9	13	100	0	50	32	16	16	36	1.90
217873--217925	20	2.6	21	84	3	72	39	15	16	28	1.89
221701--221764	19	3.7	18	72	23	66	35	17	14	32	1.89
221693--221763	32	2.2	32	92	0	124	35	18	14	32	1.90
221732--221791	19	3.0	20	81	9	70	31	13	13	41	1.83
222535--224212	48	36.7	49	69	19	510	30	19	25	24	1.98
223117--224165	39	24.0	40	71	17	563	29	20	24	25	1.99
222885--224212	87	15.0	87	89	3	1960	29	19	24	25	1.99
222579--224212	618	2.6	619	88	4	2275	30	19	25	24	1.98
222685--224214	265	5.7	267	89	4	2040	30	19	24	24	1.98
224290--224610	33	10.4	33	81	10	235	33	12	32	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224339--224530	66	2.9	64	87	7	278	36	12	31	19	1.89
224308--224629	99	3.5	93	80	12	296	32	12	33	21	1.91
224500--224634	28	4.9	28	85	7	163	25	12	35	26	1.92
224500--224634	55	2.5	56	81	10	163	25	12	35	26	1.92
224642--224701	31	1.9	31	86	6	86	28	16	30	25	1.97
225982--226029	8	6.1	8	77	22	57	0	0	16	83	0.65
225979--226029	25	2.0	25	85	7	68	0	0	15	84	0.63
225982--226024	22	2.0	22	90	9	70	0	0	16	83	0.64
225979--226035	14	3.9	14	80	13	62	0	0	17	82	0.67
225982--226035	20	2.8	20	76	18	60	0	0	18	81	0.69
228809--228849	9	4.6	9	93	0	64	56	14	7	21	1.63
229861--229974	19	6.6	19	73	22	117	35	18	13	32	1.89
229853--229923	32	2.2	32	94	0	124	38	18	12	30	1.88
229880--229904	13	1.9	13	100	0	50	32	16	16	36	1.90
229861--229974	51	2.2	51	95	0	201	35	18	13	32	1.89
236419--236444	13	2.0	13	100	0	52	38	15	15	30	1.88
236397--236464	33	2.1	32	91	8	111	32	16	16	35	1.91
237611--237666	20	2.8	19	89	5	76	39	14	16	30	1.88
237717--237768	19	2.7	20	90	6	88	44	15	11	28	1.81
239956--240005	21	2.3	21	80	10	57	56	4	18	22	1.58
241803--241833	15	2.1	15	93	0	53	48	16	22	12	1.80
243913--243950	13	2.9	13	96	0	67	34	18	15	31	1.92

Tables:   1   2

The End!