genome.fa.s1836.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1836
Parameters: 2 7 7 80 10 50 1000
Length:  117256

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2233--2260	2	14.0	2	100	0	56	50	0	0	50	1.00
3970--4013	20	2.2	20	87	0	61	52	2	0	45	1.13
4631--4658	14	2.0	14	100	0	56	35	0	0	64	0.94
5032--5200	50	3.4	50	92	3	277	27	21	23	28	1.99
9648--9963	50	6.3	50	94	0	508	32	20	17	29	1.95
18137--18200	28	2.3	27	81	10	74	34	7	20	37	1.81
18178--18239	30	2.1	30	82	14	76	33	6	19	40	1.77
18892--19109	34	6.5	34	85	5	282	40	27	7	24	1.82
18890--19109	67	3.3	67	88	1	323	40	27	7	24	1.82
23519--23734	34	6.4	34	85	5	278	40	27	7	24	1.83
23517--23734	67	3.2	67	88	1	319	40	27	7	24	1.82
25048--25081	17	2.0	17	88	0	50	23	8	20	47	1.78
25247--25330	37	2.3	35	82	8	96	34	13	13	39	1.83
30683--30712	16	1.9	15	93	6	51	30	16	0	53	1.44
32425--32506	36	2.3	36	97	0	155	26	12	18	42	1.85
32711--32797	45	2.0	45	88	4	133	20	14	11	52	1.72
36237--36293	27	2.1	27	83	3	69	17	7	21	54	1.66
40766--40817	27	1.9	27	84	0	68	23	5	19	51	1.67
40774--40834	27	2.4	27	81	8	74	24	6	19	49	1.72
40774--40844	24	2.8	24	81	10	72	21	7	22	49	1.73
42165--42209	3	15.0	3	100	0	90	33	0	0	66	0.92
42573--42679	45	2.3	46	80	7	128	49	3	5	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46292--46333	20	2.1	20	86	8	59	54	7	7	30	1.54
48016--48236	34	6.5	33	76	9	203	42	24	6	26	1.79
48019--48236	102	2.1	102	86	0	294	42	24	6	26	1.80
52419--52638	34	6.5	34	81	7	243	42	25	5	26	1.77
52419--52638	102	2.2	101	89	3	343	42	25	5	26	1.77
54685--54733	26	1.9	25	87	4	71	57	0	0	42	0.99
54712--54744	17	2.0	16	94	5	57	60	0	0	39	0.97
57979--58017	20	2.0	20	85	5	53	28	5	0	66	1.12
62824--62889	19	3.6	18	80	10	62	19	1	3	75	1.01
63271--63313	17	2.5	17	92	0	77	6	6	0	86	0.72
63271--63322	16	3.1	16	79	15	52	7	7	0	84	0.77
63954--64006	5	10.4	5	76	11	54	24	1	0	73	0.93
65134--65271	56	2.4	56	84	6	161	43	16	21	18	1.88
65178--65298	56	2.2	56	83	3	154	44	21	18	15	1.86
65257--65336	42	1.9	42	84	0	106	45	23	18	12	1.84
65295--65427	55	2.4	57	87	3	198	45	20	18	15	1.86
65828--65961	65	2.1	65	97	0	250	32	17	17	32	1.93
66664--66712	2	24.5	2	100	0	98	48	0	0	51	1.00
67757--67975	34	6.5	34	86	4	291	40	27	7	24	1.82
67757--67975	68	3.2	68	88	0	323	40	27	7	24	1.82
67755--67975	102	2.2	101	91	3	363	40	27	7	24	1.82
72067--72104	19	2.0	19	94	0	67	34	15	18	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72409--72624	34	6.4	34	84	1	256	41	25	6	26	1.80
72409--72602	102	1.9	101	91	1	316	40	24	7	26	1.82
78346--78405	28	2.1	29	82	14	72	30	13	8	48	1.71
78508--78537	8	3.6	8	91	8	51	23	40	26	10	1.86
79750--79791	20	2.1	20	90	0	66	47	0	0	52	1.00
85996--86072	3	25.7	3	100	0	154	67	0	0	32	0.91
86445--86498	27	2.1	24	83	16	65	62	7	3	25	1.38
87873--87923	27	1.9	27	92	4	86	27	19	33	19	1.96
90191--90265	20	3.8	20	78	7	89	40	13	13	33	1.83
90188--90265	40	2.0	39	87	2	111	39	14	12	33	1.84
90821--91772	28	33.1	28	86	5	1169	22	18	31	27	1.97
90822--91772	57	16.5	57	85	6	1244	22	18	31	27	1.97
90821--91772	85	11.0	84	85	8	1184	22	18	31	27	1.97
93014--93069	1	56.0	1	81	0	67	1	0	7	91	0.50
93015--93067	18	2.9	17	89	10	79	1	0	7	90	0.52
92992--93069	13	6.1	13	80	5	79	2	2	8	85	0.77
100732--100756	13	1.9	13	100	0	50	36	16	16	32	1.90
100712--100778	33	2.0	33	88	0	98	32	11	14	40	1.83
100798--100870	13	6.1	13	72	18	77	30	16	16	36	1.91
100855--100910	21	2.7	21	86	8	71	41	10	12	35	1.78
110627--110701	20	3.8	20	78	7	89	40	13	13	33	1.83
110624--110701	40	2.0	39	87	2	111	39	14	12	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112093--112153	22	2.9	22	69	13	56	34	4	4	55	1.43
112138--112240	14	7.2	14	69	18	61	40	0	0	59	0.98
112143--112216	31	2.5	30	85	10	91	44	0	0	55	0.99
112158--112206	13	3.1	16	72	22	50	42	0	0	57	0.99
114377--114523	75	2.0	75	87	4	217	40	12	10	36	1.79
116444--116485	2	21.5	2	95	4	77	50	0	0	50	1.00

Tables:   1

The End!