genome.fa.s1839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1839
Parameters: 2 7 7 80 10 50 1000
Length:  70880

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042--1242	81	2.5	79	82	6	210	30	15	28	25	1.96
1197--1266	28	2.5	28	84	11	90	24	15	35	24	1.94
1290--1426	52	2.6	52	82	6	170	34	13	24	27	1.93
1409--1511	27	3.8	27	90	3	154	23	20	32	24	1.98
3984--4009	13	2.0	13	100	0	52	38	15	15	30	1.88
3963--4029	33	2.0	33	88	0	98	43	16	14	25	1.86
4049--4116	19	3.9	18	76	23	83	38	14	11	35	1.83
4071--4095	13	1.9	13	100	0	50	32	16	16	36	1.90
4052--4114	32	2.0	32	96	0	117	36	15	12	34	1.86
6443--6493	15	3.5	14	77	17	50	33	0	1	64	1.05
6553--6599	21	2.1	23	88	7	71	59	0	0	40	0.97
6679--6723	17	2.7	18	83	10	60	35	0	0	64	0.94
6720--6774	15	3.7	15	78	7	58	60	0	0	40	0.97
6723--6772	14	3.5	14	83	5	64	62	0	0	38	0.96
6728--6768	21	2.0	21	86	13	59	60	0	0	39	0.96
7591--7619	11	2.6	11	100	0	58	24	0	0	75	0.80
7675--7708	15	2.3	15	89	0	50	23	26	0	50	1.50
8311--8336	13	2.0	13	100	0	52	30	15	15	38	1.88
8373--8442	20	3.5	19	86	7	95	28	15	14	41	1.86
10731--10910	51	3.5	51	78	3	177	30	23	11	35	1.90
10899--10970	28	2.6	27	89	8	101	23	31	18	26	1.97
11004--11079	28	2.7	29	88	6	104	23	31	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11062--11178	51	2.3	50	91	4	189	31	29	11	27	1.92
11112--11332	79	2.8	79	77	9	227	28	24	13	33	1.93
14232--14279	13	3.7	13	75	8	53	27	6	6	60	1.45
14230--14273	14	3.2	14	77	6	54	29	4	6	59	1.44
14230--14286	27	2.1	27	87	9	82	28	7	5	59	1.45
14232--14292	26	2.3	26	81	13	72	24	8	6	60	1.49
17712--17767	19	2.9	19	91	2	85	35	17	16	30	1.92
17752--17778	13	2.1	13	100	0	54	40	14	14	29	1.86
17733--17797	32	2.0	32	90	3	103	40	16	16	26	1.90
22343--22368	13	2.0	13	100	0	52	38	15	15	30	1.88
24573--24617	21	2.1	21	84	8	56	53	4	20	22	1.63
28527--28565	13	3.0	13	100	0	78	30	15	15	38	1.88
28686--28731	21	2.2	20	81	11	58	32	19	4	43	1.71
31112--31137	13	2.0	13	100	0	52	38	15	15	30	1.88
36880--37098	32	7.0	31	78	9	182	19	15	36	28	1.93
36912--37055	64	2.2	64	95	0	261	14	15	38	31	1.88
36912--37078	64	2.6	65	87	9	254	15	16	38	29	1.89
37045--39396	27	85.9	28	81	7	660	29	15	30	24	1.96
37066--37367	28	10.6	28	77	8	137	25	16	28	29	1.97
37064--37285	117	1.9	116	84	6	297	26	16	27	30	1.97
37343--39409	27	76.0	27	84	2	2309	30	15	30	23	1.95
37343--39409	109	19.0	108	85	2	2375	30	15	30	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40660--40684	13	1.9	13	100	0	50	32	16	16	36	1.90
40693--40816	52	2.4	52	93	4	207	34	18	17	29	1.94
48270--48325	22	2.5	22	82	5	60	1	19	0	78	0.84
48283--48327	11	4.1	11	91	0	72	0	17	0	82	0.68
50181--50229	20	2.4	21	86	3	64	40	8	24	26	1.83
53421--53473	8	6.4	8	80	8	52	0	32	1	66	1.03
55733--55786	20	2.7	20	91	0	81	29	14	18	37	1.91
57984--58026	21	2.1	20	83	12	52	53	6	13	25	1.65
57984--58026	20	2.1	21	83	12	54	53	6	13	25	1.65
60305--60370	33	2.0	34	88	8	100	33	16	13	36	1.88
62942--62980	13	3.0	13	80	0	51	35	10	15	38	1.81
67523--67547	3	8.3	3	100	0	50	32	36	0	32	1.58
68468--68524	13	3.9	13	72	24	51	35	15	17	31	1.92
68450--68545	32	3.0	32	93	1	165	35	13	16	34	1.88
68450--68543	19	5.6	18	68	28	73	35	13	17	34	1.89
68586--68610	13	1.9	13	100	0	50	32	16	16	36	1.90
68599--68747	52	2.9	51	87	7	219	34	19	16	28	1.94

Tables:   1

The End!