Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold184
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2218657
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.30
Warning! 156408 characters in sequence are not A, C, G, or T
File 10 of 13
Found at i:1618777 original size:69 final size:69
Alignment explanation
Indices: 1618688--1618980 Score: 269
Period size: 69 Copynumber: 4.3 Consensus size: 69
1618678 ACCTTAAATC
* * *
1618688 CCACACAAGTTTGGTGGCACCATCTATCTACCTTAGTTCTCAAGGAGCAAGATGCTTACTCACTC
1 CCACACAAG-CTGGTGGCACCATCTATCTACCTTAGTCCTCAAGGAGCAAGACGCTTACTCACTC
1618753 AAAGA
65 AAAGA
* * * * *
1618758 CCACACAAGCTGGTGGCA-C--CTATCCACCTTAGTCCATGAA-AAGCTAGATGCTTAC-CTACC
1 CCACACAAGCTGGTGGCACCATCTATCTACCTTAGTCC-TCAAGGAGCAAGACGCTTACTC-A-C
1618818 TCAAA-A
63 TCAAAGA
* * * * *
1618824 CTCACACAAGCTGGTTGCACCATCTGTCTACCTTAGTCCTCAAGGATCAAGACACTTACTTACTC
1 C-CACACAAGCTGGTGGCACCATCTATCTACCTTAGTCCTCAAGGAGCAAGACGCTTACTCACTC
*
1618889 AAAGC
65 AAAGA
* * * * *
1618894 CCACACAAGTTGATGGCACCATCTATCTA-CTTCAGTCCTTAAAGAGC-AGAACGTTTACTCACT
1 CCACACAAGCTGGTGGCACCATCTATCTACCTT-AGTCCTCAAGGAGCAAG-ACGCTTACTCACT
*
1618957 CAAAGC
64 CAAAGA
* *
1618963 CCATATAAGCTGGTGGCA
1 CCACACAAGCTGGTGGCA
1618981 TCTATACACC
Statistics
Matches: 180, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
65 1 0.01
66 30 0.17
67 25 0.14
68 7 0.04
69 82 0.46
70 35 0.19
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (69 bp):
CCACACAAGCTGGTGGCACCATCTATCTACCTTAGTCCTCAAGGAGCAAGACGCTTACTCACTCA
AAGA
Found at i:1618844 original size:67 final size:66
Alignment explanation
Indices: 1618612--1619144 Score: 298
Period size: 67 Copynumber: 7.8 Consensus size: 66
1618602 TACTTACTCA
* * * * * * *
1618612 CTCAAAGCCTGCACAAAGCTGAG-GGCAGCTATCCATCTCAATCCATGAAAAGCTGGACGCCTAC
1 CTCAAAGCC-ACAC-AAGCTG-GTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGATGCTTAC
1618676 CTAC
63 CTAC
* * * * * * * * *
1618680 CTTAAATCCCACACAAGTTTGGTGGCACCATCTATCTACCTTAGTTC-TCAAGGAGCAAGATGCT
1 CTCAAA-GCCACACAAG-CTGGTGGCA-C--CTATCCACCTCAGTCCATGAA-AAGCTAGATGCT
1618744 TA-CT-C
60 TACCTAC
*
1618749 ACTCAAAGACCACACAAGCTGGTGGCACCTATCCACCTTAGTCCATGAAAAGCTAGATGCTTACC
1 -CTCAAAG-CCACACAAGCTGGTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGATGCTTACC
1618814 TAC
64 TAC
* * * * * * * **
1618817 CTCAAAACTCACACAAGCTGGTTGCACC-ATCTGTCTACCTTAGTCC-TCAAGGATCAAGACACT
1 CTCAAAGC-CACACAAGCTGGTGGCACCTATC---C-ACCTCAGTCCATGAA-AAGCTAGATGCT
*
1618880 TACTTA-
60 TACCTAC
* * * * * * *
1618886 CTCAAAGCCCACACAAGTTGATGGCACCATCTATCTACTTCAGTCC-TTAAAGAGC-AGAACGTT
1 CTCAAAG-CCACACAAGCTGGTGGCA-C--CTATCCACCTCAGTCCATGAAA-AGCTAG-ATGCT
1618949 TA-CT-C
60 TACCTAC
* * * *
1618954 ACTCAAAGCCCATATAAGCTGGTGGCATCTATACACCTCAGTCCATGAAAAGCTAGATG-TCTAC
1 -CTCAAAG-CCACACAAGCTGGTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGATGCT-TAC
1619018 CTAC
63 CTAC
** * * * *
1619022 CTCAAAGCTCACACAAATTAGTGGCATCTACCCACCTCAGTCCATGAAAAGCTGGATGCTTACCT
1 CTCAAAGC-CACACAAGCTGGTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGATGCTTACCT
*
1619087 AT
65 AC
* **
1619089 CTCAAAGCCTACATAATTTGGTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGA
1 CTCAAAGCC-ACACAAGCTGGTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGA
1619145 CACATAAAGC
Statistics
Matches: 359, Mismatches: 71, Indels: 71
0.72 0.14 0.14
Matches are distributed among these distances:
65 1 0.00
66 52 0.14
67 143 0.40
68 21 0.06
69 75 0.21
70 43 0.12
71 20 0.06
72 1 0.00
73 3 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.24
Consensus pattern (66 bp):
CTCAAAGCCACACAAGCTGGTGGCACCTATCCACCTCAGTCCATGAAAAGCTAGATGCTTACCTA
C
Found at i:1622820 original size:35 final size:34
Alignment explanation
Indices: 1622779--1622849 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 34
1622769 AAATTTTAAT
* *
1622779 TTAAAAATTC-ATATGTGAAAATTTTAATTGAAAAA
1 TTAAAAATTCTATAAGTG-AAAGTTTAATT-AAAAA
1622814 TTAAAAATTCTATAAGTGAAAGTTTAATTAAAAA
1 TTAAAAATTCTATAAGTGAAAGTTTAATTAAAAA
1622848 TT
1 TT
1622850 TCACATGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 7 0.21
35 20 0.61
36 6 0.18
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (34 bp):
TTAAAAATTCTATAAGTGAAAGTTTAATTAAAAA
Found at i:1628100 original size:21 final size:21
Alignment explanation
Indices: 1628074--1628151 Score: 104
Period size: 21 Copynumber: 3.7 Consensus size: 21
1628064 AAAATTATCC
*
1628074 AAATGTATCAATACATTTGTA
1 AAATGTATCGATACATTTGTA
*
1628095 AAATGTATCGATACATTTGTG
1 AAATGTATCGATACATTTGTA
* *
1628116 GAATGTATCGATACA-TTCTA
1 AAATGTATCGATACATTTGTA
1628136 CAAATGTATCGATACA
1 -AAATGTATCGATACA
1628152 GGGTCCCAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
20 3 0.06
21 47 0.94
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (21 bp):
AAATGTATCGATACATTTGTA
Found at i:1628280 original size:13 final size:13
Alignment explanation
Indices: 1628262--1628287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1628252 CATTTTTTTG
1628262 TGTATCGATACAT
1 TGTATCGATACAT
1628275 TGTATCGATACAT
1 TGTATCGATACAT
1628288 CTATTCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1628853 original size:10 final size:10
Alignment explanation
Indices: 1628827--1628855 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1628817 TTAGCAAAAA
1628827 AAAAAAAC-C
1 AAAAAAACAC
1628836 AAAAAAACAC
1 AAAAAAACAC
1628846 AAAAAAACAC
1 AAAAAAACAC
1628856 TATTCCATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACAC
Found at i:1630716 original size:51 final size:52
Alignment explanation
Indices: 1630649--1630782 Score: 164
Period size: 51 Copynumber: 2.6 Consensus size: 52
1630639 TTGAGTTTCT
* * * *
1630649 CAATTCTCTACAATCGGGGATATTCCAACTACGATTTTATTTTC-AAAACAC
1 CAATTTTCTACAATCGGGGATACTCCAACTACAATTTTATTTCCAAAAACAC
* * *
1630700 TAATTTTCTATAATCGGGGATACTCCAACTCCAATTTTATTTCCAAAAAACAC
1 CAATTTTCTACAATCGGGGATACTCCAACTACAATTTTATTTCC-AAAAACAC
1630753 CAA-TTTCTTCACAATCGGGGATACTCCAAC
1 CAATTTTC-T-ACAATCGGGGATACTCCAAC
1630783 CCCGTTAATC
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
51 37 0.53
52 4 0.06
53 10 0.14
54 19 0.27
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.32
Consensus pattern (52 bp):
CAATTTTCTACAATCGGGGATACTCCAACTACAATTTTATTTCCAAAAACAC
Found at i:1630852 original size:31 final size:28
Alignment explanation
Indices: 1630773--1630841 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
1630763 ACAATCGGGG
*
1630773 ATACTCCAACCCCGTTA-ATCATCG--GGA
1 ATACTCCAACCCCGTTATTTC--CGAAGGA
*
1630800 ATACTCCAACCCTGTTATTTCCGAAGGA
1 ATACTCCAACCCCGTTATTTCCGAAGGA
1630828 ATACTCCAACCCCG
1 ATACTCCAACCCCG
1630842 ACTTTATTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 2 0.06
27 16 0.44
28 18 0.50
ACGTcount: A:0.29, C:0.35, G:0.13, T:0.23
Consensus pattern (28 bp):
ATACTCCAACCCCGTTATTTCCGAAGGA
Found at i:1630892 original size:51 final size:51
Alignment explanation
Indices: 1630828--1630993 Score: 179
Period size: 52 Copynumber: 3.2 Consensus size: 51
1630818 TTCCGAAGGA
* * *
1630828 ATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGGGG
1 ATACTCCAACCCCGATTTTATTTCCAAAACATTAATTTTTCATAATCGGGG
* * ** * *
1630879 ATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGG
1 ATACTCCAACCCCGATTTTATTTCCAAAACATTAATTTTTC-ATAATCGGGG
* * * * * *
1630931 ATACTCCAACTCCAATTTTATTTCTAAAAACATTAATTTTTCACAATTGAGG
1 ATACTCCAACCCCGATTTTATTTC-CAAAACATTAATTTTTCATAATCGGGG
1630983 ATACTCCAACC
1 ATACTCCAACC
1630994 TCGTTATTTC
Statistics
Matches: 91, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
51 33 0.36
52 45 0.49
53 13 0.14
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (51 bp):
ATACTCCAACCCCGATTTTATTTCCAAAACATTAATTTTTCATAATCGGGG
Found at i:1631013 original size:28 final size:28
Alignment explanation
Indices: 1630981--1631052 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
1630971 TCACAATTGA
* *
1630981 GGATACTCCAACCTCGTTATTTCATCG-G-
1 GGATACTCCAACCCCGTTACTTC--CGAGC
1631009 GGATACTCCAACCCCGTTACTTCCGAGC
1 GGATACTCCAACCCCGTTACTTCCGAGC
1631037 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
1631053 GCTTTATTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 37 0.93
ACGTcount: A:0.22, C:0.36, G:0.18, T:0.24
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCCGAGC
Found at i:1631045 original size:211 final size:211
Alignment explanation
Indices: 1630660--1631097 Score: 630
Period size: 211 Copynumber: 2.1 Consensus size: 211
1630650 AATTCTCTAC
* * *
1630660 AATCGGGGATATTCCAACTACGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATACTC
1 AATCGGGGATACTCCAACCACGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACTC
*
1630725 CAACTCCAATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTA
66 CAACTCCAATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTA
* * *
1630790 ATCATCGGGAATACTCCAACCCTGTTATTTCCGAAGGAATACTCCAACCCCGACTTTATTTCCAA
131 ATCATCGGGAATACTCCAACCCCGTTACTTCCGAAGGAATACTCCAACCCCGACTTTATTCCCAA
* *
1630855 AATATTGATTTTTCAT
196 AATATTGATTTCTCAA
* * *
1630871 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACT
1 AATCGGGGATACTCCAACCACGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGATACT
* ** * *
1630936 CCAACTCCAATTTTATTT-CTAAAAACATTAATTT-TTCACAATTGAGGATACTCCAACCTCGTT
65 CCAACTCCAATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTT
* * * *
1630999 ATTTCATCGGGGATACTCCAACCCCGTTACTTCCG-AGCGGATACTCCAACCCCGGCTTTATTCC
130 A-ATCATCGGGAATACTCCAACCCCGTTACTTCCGAAG-GAATACTCCAACCCCGACTTTATTCC
1631063 CAAAATATTGATTTCTCAA
193 CAAAATATTGATTTCTCAA
*
1631082 AATTGGGGATACTCCA
1 AATCGGGGATACTCCA
1631098 TGTCGCGACG
Statistics
Matches: 202, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
210 29 0.14
211 139 0.69
212 34 0.17
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (211 bp):
AATCGGGGATACTCCAACCACGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACTC
CAACTCCAATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTA
ATCATCGGGAATACTCCAACCCCGTTACTTCCGAAGGAATACTCCAACCCCGACTTTATTCCCAA
AATATTGATTTCTCAA
Found at i:1633424 original size:22 final size:23
Alignment explanation
Indices: 1633396--1633451 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
1633386 TGGACATGTT
1633396 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
1633418 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
1633441 AAAAATGCATG
1 AAAAATGCATG
1633452 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:1634409 original size:20 final size:20
Alignment explanation
Indices: 1634362--1634436 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
1634352 AAAAGGACAT
*
1634362 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1634381 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1634402 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
1634422 AATGTATCGATACAT
1 AATGTATCGATACAT
1634437 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1634430 original size:40 final size:39
Alignment explanation
Indices: 1634359--1634436 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
1634349 GGTAAAAGGA
* *
1634359 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
1634398 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1634437 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1635249 original size:29 final size:29
Alignment explanation
Indices: 1634912--1636126 Score: 1849
Period size: 29 Copynumber: 42.2 Consensus size: 29
1634902 ACAGTGGTGA
* *
1634912 TTTGAAAAGGGTTGCCATTGACTTGCATGGGC
1 TTTGAAAAGAG-TGCCACTGACTTG--TGGGC
* *
1634944 TTT-AAAAGGGTGCCACTGACGTGCGTGGGC
1 TTTGAAAAGAGTGCCACTGAC-T-TGTGGGC
* * *
1634974 TTTG-AAAGAATGCCACTAACTCGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635002 TTTGAAAGGA-TGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635030 TTTG-AAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635058 TTTGAAAAG-GTACCACTGACTTGCGTGAGC
1 TTTGAAAAGAGTGCCACTGACTT--GTGGGC
1635088 TTT-AAAAGGAGTGCCACTGACTTGTGTGAGC
1 TTTGAAAA-GAGTGCCACTGACTTGTG-G-GC
*
1635119 TTT-AAAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635147 TTTG-AAAGAGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635175 TTTG-AAAGGGTGCCACTGAGTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635203 TTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635231 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635260 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635289 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635318 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635347 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635375 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635404 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635433 TTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635461 TTTG-AAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635489 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635517 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635546 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635574 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635603 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635632 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635660 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635689 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635718 TTTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635746 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635775 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635803 TTTGAAAAGAGTGCCAGTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* * *
1635832 TTTGAAAATAATGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635861 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635890 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635919 TTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635947 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1635976 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1636005 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1636034 TTTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1636062 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1636091 TTTAAAAAGAGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1636120 TTTGAAA
1 TTTGAAA
1636127 GGGATGAACA
Statistics
Matches: 1096, Mismatches: 64, Indels: 49
0.91 0.05 0.04
Matches are distributed among these distances:
27 4 0.00
28 417 0.38
29 586 0.53
30 56 0.05
31 29 0.03
32 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TTTGAAAAGAGTGCCACTGACTTGTGGGC
Found at i:1635360 original size:115 final size:116
Alignment explanation
Indices: 1634912--1636128 Score: 1860
Period size: 115 Copynumber: 10.6 Consensus size: 116
1634902 ACAGTGGTGA
* * * *
1634912 TTTGAAAAGGGTTGCCATTGACTTGCATGGGCTTTAAAAGG-GTGCCACTGACGTGCGTGGGCTT
1 TTTGAAAAGAG-TGCCACTGACTTG--TGGGCTTTGAAAGGAGTGCCACTGAC-T-TGTGGGCTT
* * * *
1634976 TGAAA-GAATGCCACTAACTCGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGC
61 TGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* * * *
1635030 TTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTACCACTGACTTGCGTGAGCTTTAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTT--GTGGGCTTTGA
*
1635093 AAGGAGTGCCACTGACTTGTGTGAGCTTT-AAAAGGGTGCCACTGACTTGTGGGC
64 AAGGAGTGCCACTGACTTGTG-G-GCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635147 TTTG-AAAGAGTGCCACTAACTTGTGGGCTTTGAAAGG-GTGCCACTGAGTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1635210 GG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
*
1635260 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1635325 GGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
1635375 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1635440 GG-GTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
1635489 TTTGAAAAG-GTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
*
1635553 AG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635603 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
* *
1635667 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635718 TTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
* * *
1635782 AG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCAGTAACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* * * *
1635832 TTTGAAAATAATGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
* *
1635897 AGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
1635947 TTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
* *
1636012 GGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGC
66 GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* * * *
1636062 TTTGAAAAGAGTGCCACTGATTTGTGGGCTTTAAAAAGAGTGCCACTAACTTGTGGGCTTTGAAA
1 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1636127 GG
66 GG
1636129 GATGAACATT
Statistics
Matches: 1032, Mismatches: 50, Indels: 37
0.92 0.04 0.03
Matches are distributed among these distances:
112 5 0.00
113 113 0.11
114 269 0.26
115 499 0.48
116 68 0.07
117 74 0.07
118 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (116 bp):
TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
GGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
Found at i:1636129 original size:86 final size:86
Alignment explanation
Indices: 1634912--1636129 Score: 1868
Period size: 86 Copynumber: 14.1 Consensus size: 86
1634902 ACAGTGGTGA
* * *
1634912 TTTGAAAAGGGTTGCCATTGACTTGCATGGGCTTT-AAAAGGGTGCCACTGACGTGCGTGGGCTT
1 TTTG-AAAGGG-TGCCACTGACTTG--TGGGCTTTGAAAAGAGTGCCACTGAC-T-TGTGGGCTT
* * *
1634976 TG-AAAGAATGCCACTAACTCGTGGGC
60 TGAAAAGAGTGCCACTGACTTGTGGGC
*
1635002 TTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* *
1635066 G-GTACCACTGACTTGCGTGAGC
66 GAGTGCCACTGACTT--GTGGGC
* *
1635088 TTTAAAAGGAGTGCCACTGACTTGTGTGAGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTG-
1 TTTGAAAGG-GTGCCACTGACTTGTG-G-GCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGA
*
1635151 AAAGAGTGCCACTAACTTGTGGGC
63 AAAGAGTGCCACTGACTTGTGGGC
* *
1635175 TTTGAAAGGGTGCCACTGAGTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
1635239 GAGTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGC
*
1635260 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
*
1635325 GGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGC
* *
1635347 TTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
1635412 GAGTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGC
1635433 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
1635497 G-GTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGC
1635517 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1635581 AGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGC
1635603 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1635667 AGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGC
* *
1635689 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
*
1635753 GGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGC
* * *
1635775 TTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCAGTAACTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* * *
1635840 TAATGCCACTGATTTGTGGGC
66 GAGTGCCACTGACTTGTGGGC
*
1635861 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AA
1 TTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
*
1635925 AGGGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGC
* *
1635947 TTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
*
1636012 GGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGC
* * *
1636034 TTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTAAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
*
1636099 GAGTGCCACTAACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGC
1636120 TTTGAAAGGG
1 TTTGAAAGGG
1636130 ATGAACATTC
Statistics
Matches: 1055, Mismatches: 53, Indels: 44
0.92 0.05 0.04
Matches are distributed among these distances:
84 80 0.08
85 148 0.14
86 593 0.56
87 165 0.16
88 17 0.02
89 48 0.05
90 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (86 bp):
TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
GAGTGCCACTGACTTGTGGGC
Found at i:1637363 original size:12 final size:11
Alignment explanation
Indices: 1637361--1637424 Score: 85
Period size: 12 Copynumber: 5.6 Consensus size: 11
1637351 TTTTTTGCTA
*
1637361 TTTTTTCTT-T
1 TTTTTTGTTTT
1637371 TTTTTTGTTTTT
1 TTTTTTG-TTTT
1637383 TTGTTTTGTTTT
1 TT-TTTTGTTTT
1637395 TTTTTTGTGTTT
1 TTTTTTGT-TTT
1637407 TTTTTTGTTTT
1 TTTTTTGTTTT
1637418 TTTTTTG
1 TTTTTTG
1637425 GGTGTAAAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
10 6 0.12
11 18 0.37
12 20 0.41
13 5 0.10
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.88
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:1637365 original size:1 final size:1
Alignment explanation
Indices: 1637361--1637423 Score: 63
Period size: 1 Copynumber: 63.0 Consensus size: 1
1637351 TTTTTTGCTA
* * * * * * *
1637361 TTTTTTCTTTTTTTTTGTTTTTTTGTTTTGTTTTTTTTTTGTGTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1637424 GGGTGTAAAG
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:1637375 original size:23 final size:22
Alignment explanation
Indices: 1637349--1637423 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 22
1637339 GACCCTTCTA
* *
1637349 TTTTTTTTGCTATTTTTTCTTTT
1 TTTTTTTTG-TTTTTTTTGTTTT
1637372 TTTTTGTTT-TTTTGTTTTGTTTT
1 TTTTT-TTTGTTTT-TTTTGTTTT
*
1637395 TTTTTTGTGTTTTTTTTTGTTTT
1 TTTTTTTTG-TTTTTTTTGTTTT
1637418 TTTTTT
1 TTTTTT
1637424 GGGTGTAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
22 5 0.11
23 33 0.73
24 7 0.16
ACGTcount: A:0.01, C:0.03, G:0.09, T:0.87
Consensus pattern (22 bp):
TTTTTTTTGTTTTTTTTGTTTT
Found at i:1637382 original size:18 final size:18
Alignment explanation
Indices: 1637344--1637420 Score: 84
Period size: 18 Copynumber: 4.1 Consensus size: 18
1637334 ATCTAGACCC
1637344 TTCTATTTTTTTTGCTATTTT
1 TTCT-TTTTTTTTG-T-TTTT
1637365 TTCTTTTTTTTTGTTTTT
1 TTCTTTTTTTTTGTTTTT
*
1637383 TTGTTTTGTTTTT-TTTTT
1 TTCTTTT-TTTTTGTTTTT
* *
1637401 GTGTTTTTTTTTGTTTTT
1 TTCTTTTTTTTTGTTTTT
1637419 TT
1 TT
1637421 TTTGGGTGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
17 5 0.10
18 27 0.53
19 6 0.12
20 9 0.18
21 4 0.08
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (18 bp):
TTCTTTTTTTTTGTTTTT
Found at i:1637384 original size:13 final size:13
Alignment explanation
Indices: 1637368--1637423 Score: 78
Period size: 13 Copynumber: 4.4 Consensus size: 13
1637358 CTATTTTTTC
1637368 TTTTTTTTTGTTT
1 TTTTTTTTTGTTT
*
1637381 TTTTGTTTTGTTT
1 TTTTTTTTTGTTT
*
1637394 TTTTTTTGTGTTT
1 TTTTTTTTTGTTT
*
1637407 TTTTTTGTT-TTT
1 TTTTTTTTTGTTT
1637419 TTTTT
1 TTTTT
1637424 GGGTGTAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
12 8 0.21
13 30 0.79
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:1637421 original size:10 final size:10
Alignment explanation
Indices: 1637349--1637422 Score: 75
Period size: 10 Copynumber: 7.8 Consensus size: 10
1637339 GACCCTTCTA
*
1637349 TTTTTTTTGC
1 TTTTTTTTGT
* *
1637359 TATTTTTTCT
1 TTTTTTTTGT
1637369 TTTTTTTTG-
1 TTTTTTTTGT
1637378 -TTTTTTTG-
1 TTTTTTTTGT
*
1637386 TTTTGTTT-T
1 TTTTTTTTGT
*
1637395 TTTTTTGTGT
1 TTTTTTTTGT
1637405 TTTTTTTTGT
1 TTTTTTTTGT
1637415 TTTTTTTT
1 TTTTTTTT
1637423 TGGGTGTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
8 8 0.15
9 12 0.23
10 32 0.62
ACGTcount: A:0.01, C:0.03, G:0.09, T:0.86
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:1637424 original size:23 final size:24
Alignment explanation
Indices: 1637368--1637424 Score: 98
Period size: 23 Copynumber: 2.4 Consensus size: 24
1637358 CTATTTTTTC
*
1637368 TTTTTTTTTGTTTTTTTGTTTTGT
1 TTTTTTTTTGTGTTTTTGTTTTGT
1637392 TTTTTTTTTGTGTTTTT-TTTTGT
1 TTTTTTTTTGTGTTTTTGTTTTGT
1637415 TTTTTTTTTG
1 TTTTTTTTTG
1637425 GGTGTAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 16 0.50
24 16 0.50
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (24 bp):
TTTTTTTTTGTGTTTTTGTTTTGT
Found at i:1650499 original size:22 final size:23
Alignment explanation
Indices: 1650471--1650526 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
1650461 TGGACATGTT
1650471 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
1650493 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
1650516 AAAAATGCATG
1 AAAAATGCATG
1650527 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:1651484 original size:20 final size:20
Alignment explanation
Indices: 1651437--1651511 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
1651427 AAAAAGACAT
*
1651437 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1651456 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1651477 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
1651497 AATGCATCGATACAT
1 AATGTATCGATACAT
1651512 CAGGGTATGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1651506 original size:40 final size:39
Alignment explanation
Indices: 1651434--1651511 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
1651424 GGTAAAAAGA
* * *
1651434 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATACATCGATACATT
* *
1651473 CATACATGTATCGATATATTGAAAAATGCATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATACATCGATACAT
1651512 CAGGGTATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATACATCGATACATT
Found at i:1654104 original size:13 final size:13
Alignment explanation
Indices: 1654086--1654110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1654076 CAATTTTTTG
1654086 TGTATCGATACAC
1 TGTATCGATACAC
1654099 TGTATCGATACA
1 TGTATCGATACA
1654111 TACTTTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1654123 original size:32 final size:33
Alignment explanation
Indices: 1654066--1654129 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1654056 TACAAGCCAA
**
1654066 TGTATCGATACAATTTTTTGTGTATCGATACAC
1 TGTATCGATACAATACTTTGTGTATCGATACAC
1654099 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
1654130 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAC
Found at i:1807630 original size:79 final size:78
Alignment explanation
Indices: 1807518--1807906 Score: 414
Period size: 79 Copynumber: 4.9 Consensus size: 78
1807508 TCATAGATGT
* * * *
1807518 TTTTATTTCTAAAATA-CTGA-TTTTCTATCATCGGGGATACTCCAATCTCGTTATTTTCGAAAG
1 TTTTATTTCTAAAACATC-GATTTTTC-ACCATCGGGGATACTCCAATCCCGTTATTTTCGAAGG
1807581 GATACTCCAACCCTAG
64 GATACTCCAACCCT-G
* ** * *
1807597 TTTTATCTTC-AGAACATCGATTTTTCATAATCGGGAATACTCCAACCCCGTTATTTTCG-AGGA
1 TTTTAT-TTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAATCCCGTTATTTTCGAAGG-
1807660 GATACTCCAACCCTG
64 GATACTCCAACCCTG
* * * * *
1807675 ATTTTATTTCTAAAACACCGATTTTCCACCATCAGGGATACTCCAACCCCCTTA-TTTCTGATA-
1 -TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAATCCCGTTATTTTC-GA-AG
*
1807738 GGATACTCCAACTCCGG
63 GGATACTCCAAC-CCTG
* * * * *
1807755 TTTTATTTTTAAAACATCGATTTTTCACAATCGGGGATACTCTAGTCCCGTTATTTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAATCCCGTTA-TTTTCGAAGGG
1807820 ATACTCCAACCCTG
65 ATACTCCAACCCTG
* * * *
1807834 GTTTATTTCTAAAACA-CTGATTTTTCACCATCGGGAATACTCCAATCCTGTTATTTTCGAGGGG
1 TTTTATTTCTAAAACATC-GATTTTTCACCATCGGGGATACTCCAATCCCGTTATTTTCGAAGGG
1807898 ATACTCCAA
65 ATACTCCAA
1807907 TCCCATTTTT
Statistics
Matches: 262, Mismatches: 34, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
78 31 0.12
79 199 0.76
80 27 0.10
81 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (78 bp):
TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAATCCCGTTATTTTCGAAGGGA
TACTCCAACCCTG
Found at i:1807806 original size:158 final size:157
Alignment explanation
Indices: 1807518--1807926 Score: 484
Period size: 158 Copynumber: 2.6 Consensus size: 157
1807508 TCATAGATGT
* * * * * *
1807518 TTTTATTTCTAAAATACTGATTTTCTATCATCGGGGATACTCCAATCTCGTTATTTTCGAAAGGA
1 TTTTATTTCTAAAACACTGATTTTCCACCATC-GGGATACTCCAACCCCCTTATTTTCGAAAGGA
* *
1807583 TACTCCAACCCTAGTTTTATCTTCAGAACATCGATTTTTCATAATCGGGAATACTCCAACCCCGT
65 TACTCCAACCCTAGTTTTATCTTCAAAACATCGATTTTTCACAATCGGGAATACTCCAACCCCGT
1807648 TA-TTTTCGAGGAGATACTCCAACCCTG
130 TATTTTTCGAGGAGATACTCCAACCCTG
* *
1807675 ATTTTATTTCTAAAACACCGATTTTCCACCATCAGGGATACTCCAACCCCCTTA-TTTCTGATAG
1 -TTTTATTTCTAAAACACTGATTTTCCACCATC-GGGATACTCCAACCCCCTTATTTTC-GAAAG
* * * * * **
1807739 GATACTCCAACTCC-GGTTTTATTTTTAAAACATCGATTTTTCACAATCGGGGATACTCTAGTCC
63 GATACTCCAAC-CCTAGTTTTATCTTCAAAACATCGATTTTTCACAATCGGGAATACTCCAACCC
*
1807803 CGTTATTTTTCGAGGGGATACTCCAACCCTG
127 CGTTATTTTTCGAGGAGATACTCCAACCCTG
* * * ** **
1807834 GTTTATTTCTAAAACACTGATTTTTCACCATCGGGAATACTCCAATCCTGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACACTGATTTTCCACCATCGGG-ATACTCCAACCCCCTTATTTTCGAAAGGA
* *
1807899 TACTCCAATCCC-ATTTTTATCTCCAAAA
65 TACTCCAA-CCCTAGTTTTATCTTCAAAA
1807927 TGTTAACCTT
Statistics
Matches: 213, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
157 7 0.03
158 175 0.82
159 31 0.15
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (157 bp):
TTTTATTTCTAAAACACTGATTTTCCACCATCGGGATACTCCAACCCCCTTATTTTCGAAAGGAT
ACTCCAACCCTAGTTTTATCTTCAAAACATCGATTTTTCACAATCGGGAATACTCCAACCCCGTT
ATTTTTCGAGGAGATACTCCAACCCTG
Found at i:1809979 original size:4 final size:4
Alignment explanation
Indices: 1809970--1810003 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
1809960 ATTGGGGTGC
*
1809970 TTAT TTAT TTAT TTAT TCAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1810004 GTTTTGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:1820127 original size:16 final size:16
Alignment explanation
Indices: 1820106--1820152 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
1820096 CCTTTTTTTT
1820106 CAAAAAAAAAACAAAA
1 CAAAAAAAAAACAAAA
*
1820122 CAAAAAAAAAAC-AAC
1 CAAAAAAAAAACAAAA
*
1820137 CAAAAAAAAAAGAAAA
1 CAAAAAAAAAACAAAA
1820153 AAGAGAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAACAAAA
Found at i:1820128 original size:15 final size:15
Alignment explanation
Indices: 1820106--1820147 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
1820096 CCTTTTTTTT
1820106 CAAAAAAAAAACAAAA
1 CAAAAAAAAAAC-AAA
*
1820122 CAAAAAAAAAACAAC
1 CAAAAAAAAAACAAA
1820137 CAAAAAAAAAA
1 CAAAAAAAAAA
1820148 GAAAAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAAACAAA
Found at i:1821246 original size:61 final size:60
Alignment explanation
Indices: 1821146--1821577 Score: 530
Period size: 61 Copynumber: 7.1 Consensus size: 60
1821136 ATCCTTTCAA
* *
1821146 TCCTCAAAGAGCAGGACCTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1 TCCTCAAAGAGCAGGAGC-CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
1821207 TCTTTAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * * * *
1821268 TCCTCAAAGAGTAGGACGTCTTTCCCTTTTAAAGCCCACACAAGTTGGTGACAACTTTCAG
1 TCCTCAAAGAGCAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
1821329 TCCTCAAAGAGCAGGATGCTTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTTCAG
1 TCCTCAAAGAGCAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
1821390 TCCTAAAAAATCAGGA--CTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGAGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
1821448 TCCTCGAACAGCAGGACGCCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGA-G-CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
1821509 TCCTCAAAGAGCAGGA-CATCTTTCCTTTTCAAAGCCCACATAAGCTGGTGGTACCTTTTAG
1 TCCTCAAAGAGCAGGAGCCT-TTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAG
*
1821570 CCCTCAAA
1 TCCTCAAA
1821578 AGGAAGGACT
Statistics
Matches: 321, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
58 52 0.16
59 3 0.01
60 5 0.02
61 256 0.80
62 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (60 bp):
TCCTCAAAGAGCAGGAGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:1824617 original size:28 final size:28
Alignment explanation
Indices: 1824584--1828895 Score: 1739
Period size: 30 Copynumber: 146.9 Consensus size: 28
1824574 CCCTTTTTTA
* *
1824584 AAAGCCCATAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1824612 AAAGCCCACAGGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * * *
1824640 AAAGCTC-TAACTTAGTGGCACCCTTTTT
1 AAAGCCCACAAGTTAGTGGCACCC-TTTC
* **
1824668 AAAGCTCACAAGCCAGTGGCACCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTTC
* * *
1824698 AAAGCCTAAAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
*
1824728 AAAGCCCACAAGTTAGTGGCA-TCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
* * * * *
1824756 AAACCCCACAGGTCAGTGGCCCCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1824784 AAAGACCC-TAAGTTAGTGGCACCTTTTTC
1 AAAG-CCCACAAGTTAGTGGCACC-CTTTC
* * *
1824813 AAAGCCCACAAG-TCGATGGTAACTCTTTTC
1 AAAGCCCACAAGTTAG-TGG-CAC-CCTTTC
* * * *
1824843 AAAGCCCATACAA-ATCGATGGCACCCATCC
1 AAAGCCC--ACAAGTTAG-TGGCACCCTTTC
*
1824873 AAAG--CACAAGTTGGTGGCATCTCC-TTC
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTTC
* ** *
1824900 TAAAGCCCACACAAGCTCA-TACCAACTCTTTTC
1 -AAAG-CC-CACAAG-TTAGTGGC-AC-CCTTTC
* ** * *
1824933 AAAGCTCACACAAATCGGTGGCCCCCTTCC
1 AAAGC-C-CACAAGTTAGTGGCACCCTTTC
* * * *
1824963 AAAACCCACAAGTCAGGGGCACCTTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
*
1824992 AAAGCCTACATAAGTTAGTGGCA-CCTTTGGC
1 AAAGCC--CACAAGTTAGTGGCACCCTTT--C
* *** *
1825023 AAAGCCCGCACAAGTTGGCAACACCCAGTT-
1 AAAG-CC-CACAAGTTAGTGGCACCC-TTTC
* * *
1825053 AAAGCCCATAAAAGTTGGTGGCACCCTAATC
1 AAAGCCC--ACAAGTTAGTGGCACCCT-TTC
* *
1825084 AAAGCCCACAAGTTAGTGGCTTCCCCTTTT
1 AAAGCCCACAAGTTAGTGGC--ACCCTTTC
* * * * * * *
1825114 AAAGCTCATAAGTCAATGGTAACCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
*
1825142 AAAGCCCACAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1825170 AAAACCCACAAGTCAG-GGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
** *
1825199 AAAGCCCACAAGCCAATGGCACTCCTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CC-TTTC
*
1825229 AAAGCCCACAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* * * *
1825259 AAAGCCAATAAGTCAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * *
1825288 AAAGCTCACAAGTCAGTGGCACCCCTTTTG
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* * *
1825318 AAAGCCCATACGTTAGGGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* *
1825348 AAAGCTCACAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * * *
1825376 AAAACCCACAGGTTAGTGGCCCCCCTTCC
1 AAAGCCCACAAGTTAGTGG-CACCCTTTC
** * * *
1825405 AAAGCCTC-TTAGTCAGTGGCACCTTTTTT
1 AAAGCC-CACAAGTTAGTGGCACC-CTTTC
* *
1825434 AAAGCCCACAAGTCAGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
* ** * *
1825464 AAAGCCCATACAAATCGGTGGCACCCATCC
1 AAAGCCC--ACAAGTTAGTGGCACCCTTTC
* *
1825494 AAAG--CACAAGTTGGTGGCACCTCCTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTTC
* * *
1825521 TAAAGCGCACACAAGCTAGTAGCAACTCTTTCC
1 -AAAGC-C-CACAAGTTAGTGGC-ACCCTTT-C
* ** *
1825554 AAAGCCCACACAAATCGGTGGC-CCCTTCC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTTC
* * *
1825583 AAAACCCACAAGTCAGGGGCA-CCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
* *
1825611 AAAGCCTACATAAGTTGGTGGCA-CCTTTGGC
1 AAAGCC--CACAAGTTAGTGGCACCCTTT--C
* * * **
1825642 AAAGCCCGCACAAGTTGGCGGCACTCAGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTTC
* *
1825672 AAAGCCCACACAAGTTGGTGGCACCCTAATC
1 AAAG-CC-CACAAGTTAGTGGCACCCT-TTC
*
1825703 AAAGCCCACAAGTTAGTGGCATCCTCTTTT
1 AAAGCCCACAAGTTAGTGGCA-CC-CTTTC
* *
1825733 AAAGCCCACTAG-TCGATGGCACCTCTTTTC
1 AAAGCCCACAAGTTAG-TGGCACC-C-TTTC
* * *
1825763 AATGCCTACAAGTCAGTGGCATCCCTTCTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTT-TC
* * *
1825793 AAAGCTCACAAGTCAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * *
1825821 AAAGCCCACGAGTCAGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * * * *
1825849 AAGGCGCATAAGTGATTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * *
1825877 AAAGCGCATAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* * **
1825907 AAAGCCCAAAAGTCAACGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* * * ** * *
1825937 ATAGCTCGCAAGCCATTGCCACCC-TTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * **
1825964 TAAAGCCCACAAGTCAGTGGCACTCTCCC
1 -AAAGCCCACAAGTTAGTGGCACCCTTTC
* ** *
1825993 AAAGCCCAGAAGTTAGTTACACCATTTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTTC
*
1826022 AAAGCCCACAAGTCAGTGGCACACCTATTC
1 AAAGCCCACAAGTTAGTGGCAC-CCT-TTC
* * * * *
1826052 AAAGCTCATAAGTCAGGGGCACCC-TCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * * *
1826079 TAAATCCCATAAGTCAGCGGCACCCTTTC
1 -AAAGCCCACAAGTTAGTGGCACCCTTTC
* * *
1826108 AAAGCCCACAAGTCAGCGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * *
1826137 AATGCCCACAAGTTAGTGGCATACTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTTC
* * ** **
1826166 AAGGCCAACAAGTCGGTGGCATCAATTTTC
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTTC
*
1826196 AAAACCCACAAGTTAGTGGCACCCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC-TTTC
* * * **
1826225 AAAGCCGACAAGTCAATGGCAACTATTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
** * *
1826255 AAAGCCCACACAAAATGGTGGCACCC-ATC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTTC
* * **
1826284 TAAAACCCACAAGTTAGGGGCACATTTTTC
1 -AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * *
1826314 GAAGCTCGCACAAGTTGGTGGCACCTTTGTC
1 AAAGC-C-CACAAGTTAGTGGCACCCTT-TC
* * * *
1826345 AAAGCCCGCATAAGTTGGCGGCACCCTATC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTTC
* * *
1826375 GAAGCCCACGCAAGTTGGTGGCACCCTAATC
1 AAAGCCCA--CAAGTTAGTGGCACCCT-TTC
*
1826406 AAAGTCCACAAGTTAGTGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTTC
* *
1826435 AAAGCCCACATGTCAGTGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTTC
* * * * *
1826464 AAAACCCATAAGTCAGTGCCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * * **
1826493 AAAGCCCCCAAGTCAGTGACACTTTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* ** * * *
1826522 GAAGCAAACAAGTTGGTGACAACACTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
* ** * * *
1826552 AAAGCTCACACAAATCGGTAGC-TCATTTCC
1 AAAGC-C-CACAAGTTAGTGGCACCCTTT-C
* * * ** *
1826582 AAAACCTATAAGACAGGGGCACCCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
* *
1826611 AAAGCCCACACAAGTTGGTGGCACCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-TC
* ** * **
1826642 AAAGCCCGCACAGGTCGGCGGCACCCAATC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTTC
* *
1826672 AAAGCCCACACAAGTTGGTGGCACCCTAATC
1 AAAG-CC-CACAAGTTAGTGGCACCCT-TTC
* *
1826703 AAAGCCCACAAGTCAGTGGCACCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * *
1826731 AAAGTCCACAAGTCA-TAGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* *
1826760 AAAGCCCACAAGTCAGTGCCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* ** *
1826790 AAAGCCCATAACCTAGTGGCACCTATTTTC
1 AAAGCCCACAAGTTAGTGGCACC--CTTTC
* * * *
1826820 AAAGCCTACAAGTCAGCGACACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
*
1826850 AAAGCCCACAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * * *
1826878 AAAGCCCACAGGTTAGTAGCCCCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1826906 AAAGCCCCCAAGTTAGTGGCACCTTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
*** *
1826935 AAAGCCCACAAGCCGGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
* * * * * *
1826965 AAAGCTCATACAA-ATCGATGGCAACCATCC
1 AAAGC-C-CACAAGTTAG-TGGCACCCTTTC
* *
1826995 AAAG--CACAAGTTGGTTGCATCTCC-TTC
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTTC
* * ** *
1827022 TAAAGCCCACCCAAGCTCGTACCAACTCTTTTC
1 -AAAGCCCA--CAAGTTAGTGGC-AC-CCTTTC
* * *
1827055 AAAGCCCACACA--AATTGGTAGCCCTCTTC
1 AAAGCCCACA-AGTTAGTGGCA-CCCT-TTC
* * * * *
1827084 TAAAACCAACAAATCAGGGGCACCCTTTCC
1 -AAAGCCCACAAGTTAGTGGCACCCTTT-C
* *
1827114 AAAGCCTACACAAGTTAGTGGGA-CCTTTGGT
1 AAAGCC--CACAAGTTAGTGGCACCCTTT--C
* * ** * **
1827145 AAAGCCCGCCCAAGTTGGCAGCACTCAGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTTC
* *
1827175 AAAGCCCGTACAAGTTGGTGGCACCCTAATC
1 AAAGCCC--ACAAGTTAGTGGCACCCT-TTC
* *
1827206 AAAGCCCATAAGTTAGTGGCATCCCTTTTT
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* * * * * *
1827236 AAAGCTCACAAGTCAATGGTACTCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
** *
1827264 AAAGCCCACAAGTTAGTGGCGTCATTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1827292 AAAGCCCACAAGTCAGTGGCACCTCTTTT
1 AAAGCCCACAAGTTAGTGGCACC-CTTTC
*
1827321 AAAGCCCACAAGCTAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC--TTTC
* * * *
1827351 AAAGGCCACCAGTGAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* *
1827380 AATG-CCACAAGTCAGTGGCACCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTTC
* * *
1827409 AATGCCTACAAGTCAGTGGCATCCCTTCTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTT-TC
* * *
1827439 AAAGCTCACAAGTCAGTGTCA-CCTTTAC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
*
1827467 AATGCCCACAAGTTAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
** * *
1827495 AAAGCCCGTAAGTCAGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* ** *
1827523 AAAGCGCTTAAGTCAGTGGCACCCCTTTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC---TTTC
* * * * *
1827555 AGAGGCCACAAGTTAATGGCACCATTTTTT
1 AAAGCCCACAAGTTAGTGGCACC--CTTTC
* *
1827585 AAAGCCCACAAG-TAGGTGGCACTCTTCC
1 AAAGCCCACAAGTTA-GTGGCACCCTTTC
* * *
1827613 AAAGCCTACAAGTTAGTGGCACTCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
*
1827641 AAAGCCAACAAG-TAGTGGCACCTCTTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTTC
* *
1827669 AAAGCCCACAAGTTAGTGGCACACTTTTT
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* *
1827698 AAAACCCACAAGTCAGTGGCACCCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC-TTTC
** ** *
1827727 AAAGCCCGTAAGTCGGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
* * * *
1827757 AAAGCCCATAAGTCAGCGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * * * *
1827785 AAAGACCACAAGTCAATAGCACCCCTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * ** *
1827813 GAAGCCCACAAGTCAGCAGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * * *
1827842 AAAGGCCTCAAGTTCGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * ** *
1827871 AATGCCCATAAGTCGGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
1827900 AAAGCCCACAAGTCTA-TGGCACACCTTTCC
1 AAAGCCCACAAGT-TAGTGGCAC-CCTTT-C
* * * **
1827930 GAAGCCCACAAGTGAATGGCATACTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT-C
* *
1827959 AAAGCCCACAAGTCAGTGGCACCTCCTTTT
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTTC
* ** *
1827989 AATGCGTACAAGTCAGTGGCATCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* ** * *
1828019 AAAGCTCACAAGTCCGTGCCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
** *
1828047 AAAGCCCACATTTTAGTGG--CTCTTTCCC
1 AAAGCCCACAAGTTAGTGGCACCCTTT--C
**
1828075 AAAGCCCACAAGTTAGTTACACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1828103 GAAGCCCATAAGTTAGTGGCACCCATTTTC
1 AAAGCCCACAAGTTAGTGGCACCC--TTTC
* *
1828133 AAAGCCCACAAGTTAGTTGCACCCGTTTTT
1 AAAGCCCACAAGTTAGTGGCACCC--TTTC
* * * *
1828163 AAAGCCCATAAGTCAGGGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* ** *
1828191 AAAGCCCACAAGTCAACGGCACCATTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* * *
1828219 AAAGACCATAAGTTAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * *
1828248 AATGCCCACAAGTTAGTGGCACACTTTTT
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
* * * **
1828277 AAGGACCACAAATCGGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTTC
* * * * *
1828307 GAAGTCTACAAGTCAGTGGCACCCTTTTT
1 AAAGCCCACAAGTTAGTGGCACCC-TTTC
* * * * *
1828336 AAAGTCGAGAAGTCAGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
** *
1828366 AAAGCCCACACAAAATGGT-GCA-CCTTTCC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTT-C
* * *
1828395 AAAACCCACAAGTCAATGGCACCCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC-TTTC
* * *
1828424 AAAGCCTACATAAGTTGGTGGCACCTTTGTC
1 AAAGCC--CACAAGTTAGTGGCACCCTT-TC
* **
1828455 AAAGCCCGCACAAGTTGGCAGCA-CCTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-TC
* *
1828485 AAAGCCCACGCAAGTTGGTGGCACCCTAATC
1 AAAGCCCA--CAAGTTAGTGGCACCCT-TTC
1828516 AAAGCCCACAAGTTAGTGGCATCCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA--CCCTTTC
* *
1828546 AAAGCCCACAAGTCAATGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTTC
* * *
1828575 AAAGCCCACAAGTCAATGGCACCCCCTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTTC
* * * * *
1828604 AAAACCTACAAGTCAATGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
**
1828633 AAAGCCCACAAGTTAGTGGCACTTGTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTTC
** ** *
1828662 AAAGCAAACAAGTCGGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTTC
* * * * *
1828692 AAAGCTCA-TAG-AAATCGGTATCCCCTTTCC
1 AAAGCCCACAAGTTAGT-GGCA--CCCTTT-C
* * *
1828722 AAAACCTATAAGTTAAG-GGCACCCTTTCC
1 AAAGCCCACAAGTT-AGTGGCACCCTTT-C
* *
1828751 AAAGCCCACACAAGTTGGTGGCACCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-TC
* * **
1828782 AAAGCCCGCACAAG-TCGACGGCACCCAATC
1 AAAG-CC-CACAAGTTAG-TGGCACCCTTTC
* *
1828812 AAAGCCCACACAAGTTGGTGGCACCCTAATC
1 AAAG-CC-CACAAGTTAGTGGCACCCT-TTC
* * * *
1828843 TAAGCCCACAAGTCAGTGGCGCCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTTC
* *
1828871 AAAGCCCACAAGTCAGTAGCACCCT
1 AAAGCCCACAAGTTAGTGGCACCCT
1828896 GTCGCAACGT
Statistics
Matches: 3276, Mismatches: 774, Indels: 468
0.73 0.17 0.10
Matches are distributed among these distances:
26 35 0.01
27 73 0.02
28 770 0.24
29 906 0.28
30 988 0.30
31 330 0.10
32 158 0.05
33 16 0.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (28 bp):
AAAGCCCACAAGTTAGTGGCACCCTTTC
Found at i:1824662 original size:27 final size:28
Alignment explanation
Indices: 1824596--1824822 Score: 126
Period size: 28 Copynumber: 7.9 Consensus size: 28
1824586 AGCCCATAAG
*
1824596 TTAGTGGCACCCTTCCAAAGCCCACAGG
1 TTAGTGGCACCCTTCCAAAGCCCACAGC
*
1824624 TTAGTGGCACCCTTCCAAAGCTCTA-A-C
1 TTAGTGGCACCCTTCCAAAGC-CCACAGC
** *
1824651 TTAGTGGCACCCTTTTTAAAGCTCACAAGC
1 TTAGTGGCACCC-TTCCAAAGCCCAC-AGC
* * * *
1824681 -CAGTGGCACCTCTTTTCAAAGCCTAAAAG-
1 TTAGTGGCACC-C-TTCCAAAGCC-CACAGC
* *
1824710 TCAGTGGCACCCCTTTTCAAAGCCCACAAG-
1 TTAGTGGCA-CCC-TTCCAAAGCCCAC-AGC
* * * *
1824740 TTAGTGGCATCTTTCCAAACCCCACAGG
1 TTAGTGGCACCCTTCCAAAGCCCACAGC
* *
1824768 TCAGTGGCCCCCTTCCAAAGACCCTA-AG-
1 TTAGTGGCACCCTTCCAAAG-CCC-ACAGC
* *
1824796 TTAGTGGCACCTTTTTCAAAGCCCACA
1 TTAGTGGCACC-CTTCCAAAGCCCACA
1824823 AGTCGATGGT
Statistics
Matches: 157, Mismatches: 27, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
27 16 0.10
28 68 0.43
29 26 0.17
30 44 0.28
31 3 0.02
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (28 bp):
TTAGTGGCACCCTTCCAAAGCCCACAGC
Found at i:1825038 original size:31 final size:31
Alignment explanation
Indices: 1824969--1825038 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
1824959 TTCCAAAACC
* * *
1824969 CACAAGTCAGGGGCACCTTTTCCAAAGCCTA
1 CACAAGTTAGGGGCACCTTTGCCAAAGCCCA
* * * *
1825000 CATAAGTTAGTGGCACCTTTGGCAAAGCCCG
1 CACAAGTTAGGGGCACCTTTGCCAAAGCCCA
1825031 CACAAGTT
1 CACAAGTT
1825039 GGCAACACCC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (31 bp):
CACAAGTTAGGGGCACCTTTGCCAAAGCCCA
Found at i:1825485 original size:32 final size:29
Alignment explanation
Indices: 1825417--1825486 Score: 77
Period size: 32 Copynumber: 2.3 Consensus size: 29
1825407 AGCCTCTTAG
* * *
1825417 TCAGTGGCACCTTTTTTAAAGCCCACAAG
1 TCAGTGGCAACTTTTTCAAAGCCCACAAA
1825446 TCAGTGGCAACTCTTTTCAAAGCCCATACAAA
1 TCAGTGGCAACT-TTTTCAAAGCCC--ACAAA
*
1825478 TCGGTGGCA
1 TCAGTGGCA
1825487 CCCATCCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.32
30 11 0.32
32 12 0.35
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (29 bp):
TCAGTGGCAACTTTTTCAAAGCCCACAAA
Found at i:1825708 original size:31 final size:31
Alignment explanation
Indices: 1825610--1825712 Score: 118
Period size: 31 Copynumber: 3.4 Consensus size: 31
1825600 GGCACCTTTC
* * * * *
1825610 CAAAGCCTACATAAGTTGGTGGCACCTTTGG
1 CAAAGCCCACACAAGTTGGTGGCACCCTAGT
* * *
1825641 CAAAGCCCGCACAAGTTGGCGGCACTC-AGT
1 CAAAGCCCACACAAGTTGGTGGCACCCTAGT
*
1825671 CAAAGCCCACACAAGTTGGTGGCACCCTAAT
1 CAAAGCCCACACAAGTTGGTGGCACCCTAGT
1825702 CAAAGCCCACA
1 CAAAGCCCACA
1825713 AGTTAGTGGC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
30 25 0.42
31 34 0.58
ACGTcount: A:0.30, C:0.31, G:0.22, T:0.17
Consensus pattern (31 bp):
CAAAGCCCACACAAGTTGGTGGCACCCTAGT
Found at i:1826043 original size:115 final size:115
Alignment explanation
Indices: 1825791--1826157 Score: 265
Period size: 115 Copynumber: 3.2 Consensus size: 115
1825781 GCATCCCTTC
* * * * * ** *
1825791 TCAAAGCTCACAAGTCAGTGGCAC-CCT-TCCAAAGCCCACGAGTCAGTGG-CACCCTTTTAAGG
1 TCAAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCACAAGCCAG-GGCCACCCTCCTAAAG
* * * ** ** * * * * *
1825853 CGCATAAGTGATTGGCACCCTTTCAAAGCGCATAAGTCAGTGGCACCCCTTT
65 CCCACAAGTCAGCGGCACCCTCCCAAAGCCCACAAGTCAGCGACA-CACTTT
* ** * * * * ** *
1825905 TCAAAGCCCAAAAGTCAACGGCACCCCTTTTCATAGCTCGCAAGCCATTGCCACCCTTCTAAAGC
1 TCAAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCACAAGCCAGGGCCACCCTCCTAAAGC
* * * * **
1825970 CCACAAGTCAGTGGCACTCTCCCAAAGCCCAGAAGTTAGTTACAC-CATTT
66 CCACAAGTCAGCGGCACCCTCCCAAAGCCCACAAGTCAGCGACACAC-TTT
* * * *
1826020 TCAAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCATAAGTCAGGGGCACCCTCCTAAATC
1 TCAAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCACAAGCCAGGGCCACCCTCCTAAAGC
* ** *
1826085 CCATAAGTCAGCGGCACCCTTTCAAAGCCCACAAGTCAGCGGCACACTTT
66 CCACAAGTCAGCGGCACCCTCCCAAAGCCCACAAGTCAGCGACACACTTT
* *
1826135 TCAATGCCCACAAGTTAGTGGCA
1 TCAAAGCCCACAAGTCAGTGGCA
1826158 TACTTTTCAA
Statistics
Matches: 196, Mismatches: 52, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
114 21 0.11
115 118 0.60
116 57 0.29
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (115 bp):
TCAAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCACAAGCCAGGGCCACCCTCCTAAAGC
CCACAAGTCAGCGGCACCCTCCCAAAGCCCACAAGTCAGCGACACACTTT
Found at i:1826329 original size:31 final size:31
Alignment explanation
Indices: 1826291--1826368 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
1826281 ATCTAAAACC
* * *
1826291 CACAAGTTAGG-GGCACATTTTTCGAAGCTCG
1 CACAAGTT-GGCGGCACATTTGTCAAAGCCCG
* *
1826322 CACAAGTTGGTGGCACCTTTGTCAAAGCCCG
1 CACAAGTTGGCGGCACATTTGTCAAAGCCCG
*
1826353 CATAAGTTGGCGGCAC
1 CACAAGTTGGCGGCAC
1826369 CCTATCGAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
30 2 0.05
31 38 0.95
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (31 bp):
CACAAGTTGGCGGCACATTTGTCAAAGCCCG
Found at i:1826645 original size:31 final size:31
Alignment explanation
Indices: 1826610--1826740 Score: 126
Period size: 31 Copynumber: 4.4 Consensus size: 31
1826600 GCACCCTTTC
* **
1826610 CAAAGCCCACACAAGTTGGTGGCACCTTTGT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
* * * *
1826641 CAAAGCCCGCACAGGTCGGCGGCACC-CAAT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
* *
1826671 CAAAGCCCACACAAGTTGGTGGCACCCTAAT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
* *
1826702 CAAAG-CC-CACAAGTCAGTGGCACCTT-TT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
*
1826730 CAAAGTCCACA
1 CAAAGCCCACA
1826741 AGTCATAGCA
Statistics
Matches: 81, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
28 6 0.07
29 18 0.22
30 27 0.33
31 30 0.37
ACGTcount: A:0.30, C:0.34, G:0.21, T:0.16
Consensus pattern (31 bp):
CAAAGCCCACACAAGTCGGTGGCACCTTAAT
Found at i:1827277 original size:58 final size:58
Alignment explanation
Indices: 1827204--1828666 Score: 890
Period size: 58 Copynumber: 25.1 Consensus size: 58
1827194 GGCACCCTAA
* * * *
1827204 TCAAAGCCCATAAGTTAGTGGCATCCCTTTTTAAAGCTCACAAGTCAATGGTA-CTCTT
1 TCAAAGCCCACAAGTTAGTGGCA-CCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
* ** * *
1827262 CCAAAGCCCACAAGTTAGTGGC-GTCATTTCAAAGCCCACAAGTCAGTGGCACCTCTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
* * * * *
1827319 TTAAAGCCCACAAGCTAGTGGCACCCTTTTTCAAAGGCCACCAGTGAGTGGCACACT-TT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTT-AAAGCCCACAAGTCAGTGGCAC-CTCTT
* * * * *
1827378 TCAATG-CCACAAGTCAGTGGCACCTCTTTTCAATGCCTACAAGTCAGTGGCATCC-CTT
1 TCAAAGCCCACAAGTTAGTGGCACC-CTTTTTAAAGCCCACAAGTCAGTGGCA-CCTCTT
* * * ** * *
1827436 CTCAAAGCTCACAAGTCAGTGTCA-CCTTTACAATGCCCACAAGTTAGTGGCACC-CTT
1 -TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
** * * ** *
1827493 TCAAAGCCCGTAAGTCAGTGGCACCC-TTTTAAAGCGCTTAAGTCAGTGGCACCCCTTTTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCA--CC-TCTT
* * * *
1827553 TCAGAGGCCACAAGTTAATGGCACCATTTTTTAAAGCCCACAAGT-AGGTGGCA-CTCTT
1 TCAAAGCCCACAAGTTAGTGGCACC-CTTTTTAAAGCCCACAAGTCA-GTGGCACCTCTT
* * * *
1827611 CCAAAGCCTACAAGTTAGTGGCACTC-TTTTAAAGCCAACAAGT-AGTGGCACCTCTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
* *
1827667 TCAAAGCCCACAAGTTAGTGGCACACTTTTTAAAACCCACAAGTCAGTGGCACC-CTTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTC-TT
** ** * * * *
1827725 TCAAAGCCCGTAAGTCGGTGGCAACTCTTTTCAAAGCCCATAAGTCAGCGGCACC-CTT
1 TCAAAGCCCACAAGTTAGTGGC-ACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
* * * * * * ** **
1827783 CCAAAGACCACAAGTCAATAGCACCC-CTTCGAAGCCCACAAGTCAGCAGCACACT-TT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCAC-CTCTT
* * * * * * * *
1827840 TCAAAGGCCTCAAGTTCGTGGCACACTTTTCAATGCCCATAAGTCGGTGGCACACT-TT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCAC-CTCTT
*** * *
1827898 TCAAAGCCCACAAGTCTA-TGGCACACCTTTCCGAAGCCCACAAGTGAATGGCA--TACTT
1 TCAAAGCCCACAAGT-TAGTGGCAC-CCTTTTTAAAGCCCACAAGTCAGTGGCACCT-CTT
* * * **
1827956 TCCAAAGCCCACAAGTCAGTGGCACCTCCTTTTAATGCGTACAAGTCAGTGGCATCC-CTTT
1 T-CAAAGCCCACAAGTTAGTGGCACC-CTTTTTAAAGCCCACAAGTCAGTGGCA-CCTC-TT
* ** * ** ** *
1828017 TCAAAGCTCACAAGTCCGTGCCACCC-TTCCAAAGCCCACATTTTAGTGG---CTCTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
** ** * *
1828071 TCCCAAAGCCCACAAGTTAGTTACACCC-TTTCGAAGCCCATAAGTTAGTGGCACC-CATTT
1 T--CAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTC--TT
* * *
1828131 TCAAAGCCCACAAGTTAGTTGCACCCGTTTTTAAAGCCCATAAGTCAGGGGCACC-CTT
1 TCAAAGCCCACAAGTTAGTGGCACCC-TTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
* * ** * * * * *
1828189 CCAAAGCCCACAAGTCAACGGCA-CCATTTCAAAGACCATAAGTTAGTGGCACACT-TT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCAC-CTCTT
* * * * * * *
1828246 TCAATGCCCACAAGTTAGTGGCACACTTTTTAAGGACCACAAATCGGTGGCACCCCTTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTC-TT
* * * * * * * *
1828305 TCGAAGTCTACAAGTCAGTGGCACCCTTTTTAAAGTCGAGAAGTCAGTGGCAACTCTTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTC-TT
** * ** * *
1828364 TCAAAGCCCACACAAAATGGT-GCA-CCTTTCCAAAACCCACAAGTCAATGGCACC-CTTT
1 TCAAAG-CC-CACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTC-TT
* * * ** ** *
1828422 TCAAAGCCTACATAAGTTGGTGGCA-CCTTTGTCAAAGCCCGCACAAGTTGGCAGCACCT-TG
1 TCAAAGCC--CACAAGTTAGTGGCACCCTTT-TTAAAG-CC-CACAAGTCAGTGGCACCTCTT
* ** * * *
1828483 TCAAAGCCCACGCAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTAGTGGCATCCCCTT
1 TCAAAGCCCA--CAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCA-CCTCTT
* * * * * * *
1828544 TCAAAGCCCACAAGTCAATGGCACCCCTTTCAAAGCCCACAAGTCAATGGCACCCCCT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
* * * * * * * * *
1828602 TCAAAACCTACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACTTGTT
1 TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
1828660 TCAAAGC
1 TCAAAGC
1828667 AAACAAGTCG
Statistics
Matches: 1095, Mismatches: 246, Indels: 128
0.75 0.17 0.09
Matches are distributed among these distances:
54 4 0.00
55 7 0.01
56 187 0.17
57 97 0.09
58 360 0.33
59 257 0.23
60 98 0.09
61 50 0.05
62 35 0.03
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (58 bp):
TCAAAGCCCACAAGTTAGTGGCACCCTTTTTAAAGCCCACAAGTCAGTGGCACCTCTT
Found at i:1827514 original size:144 final size:143
Alignment explanation
Indices: 1824579--1828895 Score: 1848
Period size: 144 Copynumber: 29.4 Consensus size: 143
1824569 GGCACCCCTT
* * * * * * *
1824579 TTTTAAAAGCCCATAAGTTAGTGGCACC-C-TTCCAAAGCCCACAGGTTAGTGGCACCC-TTCCA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * ** * ** *
1824641 AAGCTC-TAACTTAGTGGCACCCTTTTTAAAGCTCACAAGCCAGTGGCACCTCTTTTCAAAGCCT
66 AAGCCCACAAGTCAGTGGCA-CCTTTCCAAAGCCCACAAGTTAGTGGCACC-C-TTTCAAAGCCC
* *
1824705 AAAAGTCAGTGGCACCCC
128 ACAAGTTAGTGGCA--CC
* * * * * *
1824723 TTTTCAAAGCCCACAAGTTAGTGGCA--TCTTTCCAAACCCCACAGGTCAGTGGC-CCCCTTCCA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * * *
1824785 AAGACCC-TAAGTTAGTGGCACCTTTTTCAAAGCCCACAAG-TCGATGGTAACTCTTTTCAAAGC
66 AAG-CCCACAAGTCAGTGGCACC-TTTCCAAAGCCCACAAGTTAG-TGG-CAC-CCTTTCAAAGC
* *
1824848 CCATACAA-ATCGATGGCACC
126 CC--ACAAGTTAG-TGGCACC
** * ** * * ** *
1824868 CATCCAAAG--CACAAGTTGGTGGCATCTC-CTTCTAAAGCCCACACAAGCTCA-TACCAACTCT
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTC-AAAG-CC-CACAAG-TCAGTGGC-ACCCT
* * * * * * * *
1824929 TTTCAAAGCTCACACAAATCGGTGGCCCCCTTCCAAAACCCACAAGTCAGGGGCACCTTTTCCAA
61 TTTCAAAGC-C-CACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTT-CAA
*
1824994 AGCCTACATAAGTTAGTGGCACC
123 AGCC--CACAAGTTAGTGGCACC
* * ** * **
1825017 TTTGGCAAAGCCCGCACAAGT---TGGCAACACCCAGTT-AAAGCCCATAAAAGTTGGTGGCACC
1 TTT-TCAAAG-CC-CACAAGTCAGTGGC-AC-CTCTTTTCAAAGCCC--ACAAGTCAGTGGCACC
** * * * * * * * * * *
1825078 CTAATCAAAGCCCACAAGTTAGTGGCTTCCCCTTT-TAAAGCTCATAAGTCAATGGTAACCTTCC
59 CTTTTCAAAGCCCACAAGTCAGTGG---CACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTC
*
1825142 AAAGCCCACAAGTCAGTGGCACC
121 AAAGCCCACAAGTTAGTGGCACC
* * * * *
1825165 CTTTCAAAACCCACAAGTCAG-GGCACCCCTTTTCAAAGCCCACAAGCCAATGGCACTCCTTTTC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTTC
* * * * * *
1825229 AAAGCCCACAAGTCAGTGGCACCCCTTTTCAAAGCCAATAAGTCAGTGGCACACTTTTCAAAGCT
65 AAAGCCCACAAGTCAGTGGCA--CCTTTCCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCC
*
1825294 CACAAGTCAGTGGCACCCC
127 CACAAGTTAGTGGCA--CC
* * * * * * * * *
1825313 TTTTGAAAGCCCATACGTTAGGGGCACCCCTTTTCAAAGCTCACAAGTTAGTGGCACCC-TTCCA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * * ** * * *
1825377 AAACCCACAGGTTAGTGGCCCCCCTTCCAAAGCCTC-TTAGTCAGTGGCACCTTTTTTAAAGCCC
66 AAGCCCACAAGTCAGTGG-CACCTTTCCAAAGCC-CACAAGTTAGTGGCACC-CTTTCAAAGCCC
*
1825441 ACAAGTCAGTGGCAACTC
128 ACAAGTTAGTGGC-AC-C
* * * * ** *
1825459 TTTTCAAAGCCCATACAAATCGGTGGCACC-C-ATCCAAAG--CACAAGTTGGTGGCA-CCTCCT
1 TTTTCAAAGCCC--ACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT-TT
* * ** *
1825519 TCTAAAGCGCACACAAG-CTAGTAGCAACTCTTTCCAAAGCCCACACAAATCGGTGGC-CCCTTC
63 TC-AAAGC-C-CACAAGTC-AGTGGC-AC-CTTTCCAAAG-CC-CACAAGTTAGTGGCACCCTTT
* * *
1825582 CAAAACCCACAAGTCAGGGGCACC
120 CAAAGCCCACAAGTTAGTGGCACC
* * ** ** ** * * *
1825606 TTTCCAAAGCCTACATAAGTTGGTGGCACCT-TTGGCAAAGCCCGCACAAGTTGGCGGCACTC-A
1 TTTTCAAAGCC--CACAAGTCAGTGGCACCTCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTT
* ** * *
1825669 GTCAAAGCCCACACAAGTTGGTGGCACCCTAAT-CAAAGCCCACAAGTTAGTGGCATCCTCTTTT
62 TTCAAAG-CC-CACAAGTCAGTGGCA-CCT-TTCCAAAGCCCACAAGTTAGTGGCA-CC-CTTTC
* *
1825733 AAAGCCCACTAG-TCGATGGCACCTC
121 AAAGCCCACAAGTTAG-TGGCA-C-C
* * * * *
1825758 TTTTCAATGCCTACAAGTCAGTGGCATCC-CTTCTCAAAGCTCACAAGTCAGTGGCACCC-TTCC
1 TTTTCAAAGCCCACAAGTCAGTGGCA-CCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTC
* * * * * * * *
1825821 AAAGCCCACGAGTCAGTGGCACCCTTT-TAAGGCGCATAAGTGATTGGCACCCTTTCAAAGCGCA
65 AAAGCCCACAAGTCAGTGGCA-CCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCA
* *
1825885 TAAGTCAGTGGCACCCC
129 CAAGTTAGTGGCA--CC
* ** * * * * * * * *
1825902 TTTTCAAAGCCCAAAAGTCAACGGCACCCCTTTTCATAGCTCGCAAGCCATTGCCACCCTTCT-A
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
* * ** *
1825966 AAGCCCACAAGTCAGTGGCA-CTCTCCCAAAGCCCAGAAGTTAGTTACACCATTTTCAAAGCCCA
66 AAGCCCACAAGTCAGTGGCACCT-TTCCAAAGCCCACAAGTTAGTGGCACC-CTTTCAAAGCCCA
*
1826030 CAAGTCAGTGGCACACC
129 CAAGTTAGTGG--CACC
* * * * ** * * *
1826047 TATTCAAAGCTCATAAGTCAGGGGCACC-CTCCT-AAATCCCATAAGTCAGCGGCACCC-TTTCA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * * * *
1826109 AAGCCCACAAGTCAGCGGCACACTTTTCAATGCCCACAAGTTAGTGGCATACTTTTCAAGGCCAA
66 AAGCCCACAAGTCAGTGGCAC-CTTTCCAAAGCCCACAAGTTAGTGGCA-CCCTTTCAAAGCCCA
** *
1826174 CAAGTCGGTGGCATCAA
129 CAAGTTAGTGGCA-C-C
* * * * **
1826191 TTTTCAAAACCCACAAGTTAGTGGCACC-CTTTTCAAAGCCGACAAGTCAATGGCAACTATTTTC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTC
* * ** * * * ** *
1826255 AAAGCCCACACAAAAT-GGTGGCACCCATCTAAAACCCACAAGTTAGGGGCACATTTTTCGAAGC
65 AAAG-CC-CAC-AAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGC
*
1826319 TCGCACAAGTTGGTGGCACC
126 -C-CACAAGTTAGTGGCACC
* ** * * * **
1826339 TTTGTCAAAGCCCGCATAAGTTGGCGGCACC-C-TATCGAAGCCCACGCAAGTTGGTGGCACCCT
1 TTT-TCAAAG-CC-CACAAGTCAGTGGCACCTCTTTTCAAAGCCCA--CAAGTCAGTGGCACCCT
** * * * *
1826402 AATCAAAGTCCACAAGTTAGTGGCACCCCTTT-CAAAGCCCACATGTCAGTGGCACCCCTTTCAA
61 TTTCAAAGCCCACAAGTCAGTGGCA--CCTTTCCAAAGCCCACAAGTTAGTGGCA-CCCTTTCAA
* * * *
1826466 AACCCATAAGTCAGTGCCACAC
123 AGCCCACAAGTTAGTGGCAC-C
* * * * ** ** * *
1826488 TTTTCAAAGCCCCCAAGTCAGTGACA-CTTTTTTCGAAGCAAACAAGTTGGTGACAACACTTTTC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTC
* * * * * * * * ** *
1826552 AAAGCTCACACAAATCGGTAGCTCATTTCCAAAACCTATAAGACAGGGGCACCCTTTCCAAAGCC
65 AAAGC-C-CACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTT-CAAAG-C
*
1826617 CACACAAGTTGGTGGCACC
126 C-CACAAGTTAGTGGCACC
* * * ** **
1826636 TTTGTCAAAGCCCGCACAGGTCGGCGGCACC-C-AATCAAAGCCCACACAAGTTGGTGGCACCCT
1 TTT-TCAAAG-CC-CACAAGTCAGTGGCACCTCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCT
** * * * *
1826699 AATCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGTCCACAAGTCA-TAGCACCCCTTTTCAAA
61 TTTCAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCA-CCC-TTTCAAA
* *
1826763 GCCCACAAGTCAGTGCCACCCC
124 GCCCACAAGTTAGTGGCA--CC
* * * * * *
1826785 TTTTCAAAGCCCATAA-CCTAGTGGCACCTATTTTCAAAGCCTACAAGTCAGCGACACCCCTTTT
1 TTTTCAAAGCCCACAAGTC-AGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTT
* * * * * * *
1826849 CAAAGCCCACAAGTTAGTGGCACCCTTCCAAAGCCCACAGGTTAGTAGCCCCCTTCCAAAGCCCC
64 CAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCA
1826914 CAAGTTAGTGGCACC
129 CAAGTTAGTGGCACC
* * * * * * *
1826929 TTTTCCAAAGCCCACAAGCCGGTGGCAACTCTTTTCAAAGCTCATACAAATC-GATGGCAACC-A
1 TTTT-CAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGC-C-CACAAGTCAG-TGGCACCCTT
* ** * * * * * ** *
1826992 TCCAAAG--CACAAGTTGGTTGCATCTCCTTCTAAAGCCCACCCAAGCTCGTACCAACTCTTTTC
62 TTCAAAGCCCACAAGTCAGTGGCA-C-CTTTCCAAAGCCCA--CAAGTTAGTGGC-AC-CCTTTC
* * *
1827055 AAAGCCCACACAAATTGGTAGC-CC
121 AAAG-CC-CACAAGTTAGTGGCACC
* * * * * * * *
1827079 TCTTCTAAAACCAACAAATCAGGGGCACC-CTTTCCAAAGCCTACACAAGTTAGTGGGA-CCTTT
1 TTTTC-AAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCC--CACAAGTCAGTGGCACCCTTT
* ** ** ** * *
1827142 GGT-AAAGCCCGCCCAAGTTGGCAGCACTCAGT-CAAAGCCCGTACAAGTTGGTGGCACCCTAAT
63 --TCAAAG-CC-CACAAGTCAGTGGCAC-CTTTCCAAAGCCC--ACAAGTTAGTGGCACCCT-TT
*
1827205 CAAAGCCCATAAGTTAGTGGCATCCC
120 CAAAGCCCACAAGTTAGTGGCA--CC
* * * * * * ** *
1827231 TTTTTAAAGCTCACAAGTCAATGGTA-CTC-TTCCAAAGCCCACAAGTTAGTGGC-GTCATTTCA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
** * *
1827293 AAGCCCACAAGTCAGTGGCACCTCTTTTAAAGCCCACAAGCTAGTGGCACCCTTTTTCAAAGGCC
66 AAGCCCACAAGTCAGTGGCACCT-TTCCAAAGCCCACAAGTTAGTGGCACCC--TTTCAAAGCCC
* *
1827358 ACCAGTGAGTGGCACAC
128 ACAAGTTAGTGGCAC-C
* * * *
1827375 TTTTCAATG-CCACAAGTCAGTGGCACCTCTTTTCAATGCCTACAAGTCAGTGGCATCCCTTCTC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTC
* * * * **
1827439 AAAGCTCACAAGTCAGTGTCACCTTTACAATGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCGT
65 AAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
*
1827504 AAGTCAGTGGCACCC
130 AAGTTAGTGGCA-CC
* ** * * * * * *
1827519 TTTT-AAAGCGCTTAAGTCAGTGGCACCCCTTTTTTCAGAGGCCACAAGTTAATGGCACCATTTT
1 TTTTCAAAGCCCACAAGTCAGTGGCA--CCTCTTTTCAAAGCCCACAAGTCAGTGGCACC-CTTT
* * * *
1827583 TTAAAGCCCACAAGT-AGGTGGCA-CTCTTCCAAAGCCTACAAGTTAGTGGCACTCTTTTAAAGC
63 TCAAAGCCCACAAGTCA-GTGGCACCT-TTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
*
1827646 CAACAAG-TAGTGGCACC
126 CCACAAGTTAGTGGCACC
* *
1827663 TCTTTCAAAGCCCACAAGTTAGTGGCACACT-TTTT-AAAACCCACAAGTCAGTGGCACCCTTTT
1 T-TTTCAAAGCCCACAAGTCAGTGGCAC-CTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTT
** * * * * * * *
1827726 CAAAGCCCGTAAGTCGGTGGCAACTCTTTTCAAAGCCCATAAGTCAGCGGCACCCTTCCAAAGAC
64 CAAAGCCCACAAGTCAGTGGC-AC-CTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
* * *
1827791 CACAAGTCAATAGCACC
127 CACAAGTTAGTGGCACC
** * ** * * * *
1827808 CCTTCGAAGCCCACAAGTCAGCAGCA-CACTTTTCAAAGGCCTCAAGTTC-GTGGCACACTTTTC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAG-TCAGTGGCACCCTTTTC
* * * * *
1827871 AATGCCCATAAGTCGGTGGCACACTTTTCAAAGCCCACAAGTCTA-TGGCACACCTTTCCGAAGC
65 AAAGCCCACAAGTCAGTGGCAC-CTTTCCAAAGCCCACAAGT-TAGTGGCAC-CCTTT-CAAAGC
* * *
1827935 CCACAAGTGAATGGCATAC
126 CCACAAGTTAGTGGCA-CC
* * **
1827954 TTTCCAAAGCCCACAAGTCAGTGGCACCTCCTTTT-AATGCGTACAAGTCAGTGGCATCCCTTTT
1 TTTTCAAAGCCCACAAGTCAGTGGCACCT-CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTT
* * * * ** *
1828018 CAAAGCTCACAAGTCCGTGCCACCCTTCCAAAGCCCACATTTTAGTGG--CTCTTTCCCAAAGCC
64 CAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTT--CAAAGCC
**
1828081 CACAAGTTAGTTACACC
127 CACAAGTTAGTGGCACC
* * * * * *
1828098 CTTTCGAAGCCCATAAGTTAGTGGCACC-CATTTTCAAAGCCCACAAGTTAGTTGCACCCGTTTT
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTC-TTTTCAAAGCCCACAAGTCAGTGGCACCC-TTTT
* * * * * ** * *
1828162 TAAAGCCCATAAGTCAGGGGCACCCTTCCAAAGCCCACAAGTCAACGGCACCATTTCAAAGACCA
64 CAAAGCCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCA
*
1828227 TAAGTTAGTGGCACAC
129 CAAGTTAGTGGCAC-C
* * * * * *
1828243 TTTTCAATGCCCACAAGTTAGTGGCACACT-TTTT-AAGGACCACAAATCGGTGGCACCCCTTTT
1 TTTTCAAAGCCCACAAGTCAGTGGCAC-CTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTT
* * * ** * * * * *
1828306 CGAAGTCTACAAGTCAGTGGCACCCTTTTTAAAGTCGAGAAGTCAGTGGCAACTCTTTTCAAAGC
64 CAAAGCCCACAAGTCAGTGGCA-CCTTTCCAAAGCCCACAAGTTAGTGGC-AC-CCTTTCAAAG-
** *
1828371 CCACACAAAATGGT-GCACC
125 CC-CACAAGTTAGTGGCACC
* * * * **
1828390 TTTCCAAAACCCACAAGTCAATGGCACC-CTTTTCAAAGCCTACATAAGTTGGTGGCA-CCTTTG
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCC--CACAAGTCAGTGGCACCCTTT-
** ** * *
1828453 TCAAAGCCCGCACAAGTTGGCAGCACCTTGT-CAAAGCCCACGCAAGTTGGTGGCACCCTAATCA
63 TCAAAG-CC-CACAAGTCAGTGGCACCTT-TCCAAAGCCCA--CAAGTTAGTGGCACCCT-TTCA
1828517 AAGCCCACAAGTTAGTGGCATCCC
122 AAGCCCACAAGTTAGTGGCA--CC
* * * * **
1828541 CTTTCAAAGCCCACAAGTCAATGGCACC-CCTTTCAAAGCCCACAAGTCAATGGCACCCCCTTCA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * ** **
1828605 AAACCTACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACTTGTTTCAAAGCAAA
66 AAGCCCACAAGTCAGTGGCAC-CTTTCCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCA
**
1828670 CAAGTCGGTGGCAACTC
129 CAAGTTAGTGGC-AC-C
* * * * * * * * * * *
1828687 TTTTCAAAGCTCA-TAG-AAATCGGTATCCCCTTTCCAAAACCTATAAGTTAAG-GGCACCCTTT
1 TTTTCAAAGCCCACAAGTCAGT-GGCA-CCTCTTTTCAAAGCCCACAAG-TCAGTGGCACCCTTT
* ** * * * **
1828749 CCAAAGCCCACACAAGTTGGTGGCACCTTTGTCAAAGCCCGCACAAG-TCGACGGCACCCAATCA
63 TCAAAG-CC-CACAAGTCAGTGGCACCTTT-CCAAAG-CC-CACAAGTTAG-TGGCACCCTTTCA
*
1828813 AAGCCCACACAAGTTGGTGGCACCC
122 AAG-CC-CACAAGTTAGTGGCA-CC
** * * *
1828838 TAATCTAAGCCCACAAGTCAGTGGC-GC-CTTTTCAAAGCCCACAAGTCAGTAGCACCCT
1 TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
1828896 GTCGCAACGT
Statistics
Matches: 3129, Mismatches: 776, Indels: 531
0.71 0.17 0.12
Matches are distributed among these distances:
142 29 0.01
143 144 0.05
144 577 0.18
145 415 0.13
146 417 0.13
147 360 0.12
148 260 0.08
149 350 0.11
150 224 0.07
151 222 0.07
152 100 0.03
153 9 0.00
154 22 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (143 bp):
TTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCA
AAGCCCACAAGTCAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACA
AGTTAGTGGCACC
Found at i:1827551 original size:203 final size:202
Alignment explanation
Indices: 1825137--1827769 Score: 762
Period size: 203 Copynumber: 12.8 Consensus size: 202
1825127 CAATGGTAAC
* * * * * * * *
1825137 CTTCCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAACCCACAAGTCAG-GGCACCCCTTTTCA
1 CTTCCAAAGCCTACAAGTTAGTGGCATCCCTTTTAAAGCTCACAAGTCAGTGTCACCTC-TTACA
** * *
1825200 AAGCCCACAAGCCAATGGCACTCCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCAAAGCC
65 AAGCCCACAAGTTAGTGGCA--CCATTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTT-AAAGCC
* * * * * * *
1825265 AATAAGTCAGTGGCACAC-TTTTCAAA-GCTCACAAGTCAGTGGCACCCCTTTTGAAAGCCCATA
126 CATAAGTCAGTGGCACCCTTTTTCAAAGGC-CACAAGTGAATGGCACCACTTTTCAAAGCCCACA
* *
1825328 CGTTAGG-GGCACCC
190 AG-TAGGTGGCA-CT
* ** * * * * * * * *
1825342 CTTTTCAAAG-CTCACAAGTTAGTGGCA-CCCTTCCAAAACCCACAGGTTAGTGGCCCCCCTTCC
1 C-TTCCAAAGCCT-ACAAGTTAGTGGCATCCCTTTTAAAGCTCACAAGTCAGTGTCACCTCTTAC
** * * * *
1825405 AAAGCCTC-TTAGTCAGTGGCACCTTTTTTAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGC
64 AAAGCC-CACAAGTTAGTGGCACC-ATTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTT-AAAGC
* * * * * * *
1825469 CCATACAAATCGGTGGCACCC--ATCCAAA-G-CACAAGTTG-GTGGCACCTC-CTTCTAAAGCG
125 CCAT--AAGTCAGTGGCACCCTTTTTCAAAGGCCACAAG-TGAATGGCACCACTTTTC-AAAGC-
*
1825528 CACACAAGCTA-GTAGCAACT
185 C-CACAAG-TAGGTGGC-ACT
* * ** ** * * * * *
1825548 CTTTCCAAAGCCCACACAAATCGGTGGC--CCCTTCCAAAACCCACAAGTCAGGGGCACCT-TTC
1 C-TTCCAAAG-CC-TACAAGTTAGTGGCATCCCTTTTAAAGCTCACAAGTCAGTGTCACCTCTTA
* * ** * * ** *
1825610 CAAAGCCTACATAAGTTGGTGGCACC-TTTGGCAAAGCCCGCACAAGTTGGCGGCACTCAGTCAA
63 CAAAGCC--CACAAGTTAGTGGCACCATTT--CAAAG-CC-CACAAGTCAGTGGCACCCTTTTAA
* ** ** * * * *
1825674 AGCCCACACAAGTTGGTGGCACCC-TAATCAAAGCCCACAAGTTAGTGGCATCCTCTTTT-AAAG
122 AG-CC-CATAAGTCAGTGGCACCCTTTTTCAAAGGCCACAAGTGAATGGCA-CCACTTTTCAAAG
* * *
1825737 CCCACTAGTCGATGGCACCT
184 CCCACAAGTAGGTGGCA-CT
* * * * * *
1825757 CTTTTCAATGCCTACAAGTCAGTGGCATCCCTTCTCAAAGCTCACAAGTCAGTGGCACC-CTTCC
1 C-TTCCAAAGCCTACAAGTTAGTGGCATCCCTT-TTAAAGCTCACAAGTCAGTGTCACCTCTTAC
* * * * * * * * * * *
1825821 AAAGCCCACGAGTCAGTGGCACCCTTTTAAGGCGCATAAGTGATTGGCACCCTTTCAAAGCGCAT
64 AAAGCCCACAAGTTAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCAT
* * * * * * * * * *
1825886 AAGTCAGTGGCACCCCTTTTCAAAGCCCAAAAGTCAACGGCACCCCTTTTCATAGCTCGCAAGCC
129 AAGTCAGTGGCACCCTTTTTCAAAGGCCACAAGTGAATGGCACCACTTTTCAAAGCCCACAAG-T
* * *
1825951 A-TTGCCACC
193 AGGTGGCACT
* * * * *** * * * *
1825960 CTTCTAAAGCCCACAAGTCAGTGGCA-CTCTCCCAAAGCCCAGAAGTTAGT-TACACCAT-TTTC
1 CTTCCAAAGCCTACAAGTTAGTGGCATCCCTTTTAAAGCTCACAAGTCAGTGT-CACC-TCTTAC
* * * * * ** *
1826022 AAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCATAAGTCAGGGGCACCCTCCTAAATCCC
64 AAAGCCCACAAGTTAGTGGCAC-CAT-TTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCC
* * * ** *
1826087 ATAAGTCAGCGGCACCC--TTTCAAAGCCCACAAGTCAGCGGCA-CACTTTTCAATGCCCACAAG
127 ATAAGTCAGTGGCACCCTTTTTCAAAGGCCACAAGTGAATGGCACCACTTTTCAAAGCCCACAAG
1826149 TTA-GTGGCA-T
192 -TAGGTGGCACT
* * * ** ** * * * *
1826159 ACTTTTCAAGGCCAACAAGTCGGTGGCATCAATTTTCAAAACCCACAAGTTAGTGGCACC-CTTT
1 -C-TTCCAAAGCCTACAAGTTAGTGGCATCCCTTTT-AAAGCTCACAAGTCAGTGTCACCTC-TT
* * * * * * * * *
1826223 TCAAAGCCGACAAGTCAATGGCAACTATTTTCAAAGCCCACACAAAAT-GGTGGCACCCATCTAA
62 ACAAAGCCCACAAGTTAGTGGC-ACCA-TTTCAAAG-CC-CAC-AAGTCAGTGGCACCCTTTTAA
* * * * * * * *
1826287 AACCCACAAGTTAGGGGCA-CATTTTTCGAAGCTCGCACAAGTTG-GTGGCA-C-CTTTGTCAAA
122 AGCCCATAAGTCAGTGGCACCCTTTTTCAAAG-GC-CACAAG-TGAATGGCACCACTTT-TCAAA
* * * *
1826348 GCCCGCATAAGTTGGCGGCACC
183 G-CC-CACAAGTAGGTGGCACT
* * * * * * * *
1826370 CTAT-CGAAGCCCACGCAAGTTGGTGGCA-CCCTAATCAAAG-TCCACAAGTTAGTGGCACCCCT
1 CT-TCCAAAGCCTA--CAAGTTAGTGGCATCCCT-TTTAAAGCT-CACAAGTCAGTGTCACCTCT
* * * * * * * *
1826432 TTCAAAGCCCACATGTCAGTGGCACCCCTTTCAAAACCCATAAGTCAGTGCCACACTTTTCAAAG
61 TACAAAGCCCACAAGTTAGTGGCA-CCATTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAG
** * * * * * * *
1826497 CCCCCAAGTCAGTGACA-CTTTTTTCGAA-GCAAACAAGTTG-GTGACAACACTTTTCAAAGCTC
124 CCCATAAGTCAGTGGCACCCTTTTTCAAAGGC-CACAAG-TGAATGGCACCACTTTTCAAAGC-C
* * * *
1826559 ACACAAATCGGTAGCTCAT
186 -CACAAGTAGGTGGCAC-T
* * ** * * * ** *
1826578 -TTCCAAAACCTATAAGACAGGGGCA-CCCTTTCCAAAGCCCACACAAGTTGGTGGCACCT-TTG
1 CTTCCAAAGCCTACAAGTTAGTGGCATCCCTTT-TAAAG--CTCACAAGTCAGTGTCACCTCTT-
* * ** * * ** * *
1826640 TCAAAGCCCGCACAGGTCGGCGGCACCCA-ATCAAAGCCCACACAAGTTGGTGGCACCCTAATCA
62 ACAAAG-CC-CACAAGTTAGTGGCA-CCATTTCAAAG-CC-CACAAGTCAGTGGCACCCT-TTTA
* * * * *
1826704 AAGCCCACAAGTCAGTGGCA-CC-TTTTCAAAGTCCACAAGT-CATAGCACCCCTTTTCAAAGCC
121 AAGCCCATAAGTCAGTGGCACCCTTTTTCAAAGGCCACAAGTGAATGGCACCACTTTTCAAAGCC
* *
1826766 CACAAGTCA-GTGCCACCC
186 CACAAGT-AGGTGGCA-CT
* * * ** * * * *
1826784 CTTTTCAAAGCCCATAACCTAGTGGCA-CCTATTTTCAAAGC-CTACAAGTCAGCGACACCCCTT
1 C-TTCCAAAGCCTACAAGTTAGTGGCATCC-CTTTT-AAAGCTC-ACAAGTCAGTGTCACCTC-T
* * * * * * * **
1826847 TTCAAAGCCCACAAGTTAGTGGCACCCTTCCAAAGCCCACAGGTTAGTAGCCCCCTTCCAAAGCC
61 TACAAAGCCCACAAGTTAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCC
** * * * * * * * *
1826912 CCCAAGTTAGTGGCA-CCTTTTCCAAAGCCCACAAGCCG-GTGGCAACTCTTTTCAAAGCTCATA
126 CATAAGTCAGTGGCACCCTTTTTCAAAGGCCACAAG-TGAATGGCACCACTTTTCAAAGC-C-CA
* * *
1826975 CAAATCGATGGCAAC-
188 CAAGTAGGTGGC-ACT
* * * * * ** *
1826990 CATCCAAAG-C-ACAAGTTGGTTGCATCTCCTTCTAAAGCCCACCCAAGCTC-GTACCAACTCTT
1 CTTCCAAAGCCTACAAGTTAGTGGCATC-CCTTTTAAAGCTCA--CAAG-TCAGTGTCACCTC-T
* * * * * * * * *
1827052 TTCAAAGCCCACACAAATTGGTAGC-CC-TCTTCTAAAACCAACAAATCAGGGGCACCCTTTCCA
61 TACAAAG-CC-CACAAGTTAGTGGCACCAT-TTC-AAAGCCCACAAGTCAGTGGCACCCTTT-TA
* * * * * **
1827115 AAGCCTACACAAGTTAGTGGGA-CCTTTGGT-AAAGCCCGCC-CAAGT---TGGCAGCACTCAGT
121 AAGCC--CATAAGTCAGTGGCACCCTTT-TTCAAAG---GCCACAAGTGAATGGCACCACT-TTT
* *
1827174 CAAAGCCCGTACAAGTTGGTGGCACC
179 CAAAGCCC--ACAAGTAGGTGGCACT
* * *
1827200 CTAAT-CAAAGCCCATAAGTTAGTGGCATCCCTTTTTAAAGCTCACAAGTCAATGGT-A-CTCTT
1 CT--TCCAAAGCCTACAAGTTAGTGGCATCCC-TTTTAAAGCTCACAAGTCAGT-GTCACCTCTT
* **
1827262 CCAAAGCCCACAAGTTAGTGGCGTCATTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTAAAGCC
62 ACAAAGCCCACAAGTTAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACC-CTTTTAAAGCC
* * * *
1827327 CACAAG-CTAGTGGCACCCTTTTTCAAAGGCCACCAGTGAGTGGCA-CACTTTTCAATG-CCACA
126 CATAAGTC-AGTGGCACCCTTTTTCAAAGGCCACAAGTGAATGGCACCACTTTTCAAAGCCCACA
1827389 AGTCA-GTGGCACCT
190 AGT-AGGTGGCA-CT
* * * *
1827403 CTTTTCAATGCCTACAAGTCAGTGGCATCCCTTCTCAAAGCTCACAAGTCAGTGTCACCT-TTAC
1 C-TTCCAAAGCCTACAAGTTAGTGGCATCCCTT-TTAAAGCTCACAAGTCAGTGTCACCTCTTAC
* * ** * *
1827467 AATGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCGTAAGTCAGTGGCACCCTTTTAAAGCGCTT
64 AAAGCCCACAAGTTAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCAT
* * * *
1827532 AAGTCAGTGGCACCCCTTTTTTCAGAGGCCACAAGTTAATGGCACCATTTTTTAAAGCCCACAAG
129 AAGTCAGTGGCA-CCC-TTTTTCAAAGGCCACAAGTGAATGGCACCACTTTTCAAAGCCCACAAG
1827597 TAGGTGGCACT
192 TAGGTGGCACT
* * *
1827608 CTTCCAAAGCCTACAAGTTAGTGGCA-CTCTTTTAAAGC-CAACAAGT-AGTGGCACCTCTTTCA
1 CTTCCAAAGCCTACAAGTTAGTGGCATCCCTTTTAAAGCTC-ACAAGTCAGTGTCACCTCTTACA
* * * *
1827670 AAGCCCACAAGTTAGTGGCACACTTTTTAAAACCCACAAGTCAGTGGCACCCTTTTCAAAGCCCG
65 AAGCCCACAAGTTAGTGGCAC-CATTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCA
* * * *
1827735 TAAGTCGGTGGCA-ACTCTTTTCAAAGCCCATAAGT
128 TAAGTCAGTGGCACCCT-TTTTCAAAGGCCACAAGT
1827770 CAGCGGCACC
Statistics
Matches: 1844, Mismatches: 417, Indels: 337
0.71 0.16 0.13
Matches are distributed among these distances:
200 40 0.02
201 81 0.04
202 116 0.06
203 284 0.15
204 169 0.09
205 185 0.10
206 191 0.10
207 221 0.12
208 177 0.10
209 116 0.06
210 182 0.10
211 43 0.02
212 12 0.01
213 27 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (202 bp):
CTTCCAAAGCCTACAAGTTAGTGGCATCCCTTTTAAAGCTCACAAGTCAGTGTCACCTCTTACAA
AGCCCACAAGTTAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCATAA
GTCAGTGGCACCCTTTTTCAAAGGCCACAAGTGAATGGCACCACTTTTCAAAGCCCACAAGTAGG
TGGCACT
Found at i:1827617 original size:90 final size:88
Alignment explanation
Indices: 1827215--1828335 Score: 280
Period size: 88 Copynumber: 12.9 Consensus size: 88
1827205 CAAAGCCCAT
* * * * * * * *
1827215 AAGTTAGTGGCATCCCTTTTTAAAGCTCACAAGTCAATGGTACTCTTCCAAAGCCCACAAGTTAG
1 AAGTTAATGGCA-CCC-TTTCAAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCCTACAAGTCAG
* ** * *
1827280 TGG----CGTCATTTCAAAGCCCAC
64 TGGCACCCCTTTTTTCAGAGGCCAC
* * * * *
1827301 AAGTCAGTGGCACCTCTTTTAAAGCCCACAAG-CTAGTGGCACCCTTTTTCAAAGGCC-ACCAGT
1 AAGTTAATGGCACC-CTTTCAAAGCCCACAAGTC-AGTGGCACCC--TTCCAAA-GCCTACAAGT
* * *
1827364 GAGTGGCA-CAC--TTTTCA-ATGCCAC
61 CAGTGGCACCCCTTTTTTCAGAGGCCAC
* * * *
1827388 AAGTCAGTGGCACCTCTTTTCAATGCCTACAAGTCAGTGGCATCCCTTCTCAAAG-CTCACAAGT
1 AAGTTAATGGCACC-C-TTTCAAAGCCCACAAGTCAGTGGCA-CCCTTC-CAAAGCCT-ACAAGT
* * *
1827452 CAGTGTCA--CC--TTTACA-ATGCCCAC
61 CAGTGGCACCCCTTTTTTCAGA-GGCCAC
* ** ** *
1827476 AAGTTAGTGGCACCCTTTCAAAGCCCGTAAGTCAGTGGCACCCTTTTAAAGCGCT-TAAGTCAGT
1 AAGTTAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTCCAAAGC-CTACAAGTCAGT
1827540 GGCACCCCTTTTTTCAGAGGCCAC
65 GGCACCCCTTTTTTCAGAGGCCAC
* * * *
1827564 AAGTTAATGGCACCATTTTTTAAAGCCCACAAGT-AGGTGGCACTCTTCCAAAGCCTACAAGTTA
1 AAGTTAATGGCACC--CTTTCAAAGCCCACAAGTCA-GTGGCACCCTTCCAAAGCCTACAAGTCA
* *
1827628 GTGGCA---CTCTTTT-A-AAGCCAAC
63 GTGGCACCCCTTTTTTCAGAGGCC-AC
* * * ** * *
1827650 AAG-TAGTGGCACCTCTTTCAAAGCCCACAAGTTAGTGGCACACTTTTTAAAACCCACAAGTCAG
1 AAGTTAATGGCACC-CTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTCCAAAGCCTACAAGTCAG
* * **
1827714 TGGCA-CCC--TTTTCAAAGCCCGT
64 TGGCACCCCTTTTTTCAGAGGCCAC
*** * * *
1827736 AAGTCGGTGGCAACTCTTTTCAAAGCCCATAAGTCAGCGGCACCCTTCCAAAGACC-ACAAGTCA
1 AAGTTAATGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTCCAAAG-CCTACAAGTCA
* * *
1827800 ATAGCACCCC----TTC-GAAGCCCAC
63 GTGGCACCCCTTTTTTCAG-AGGCCAC
* *** * * * * * * * * *
1827822 AAGTCAGCAGCACACTTTTCAAAGGCCTCAAGTTC-GTGGCACACTTTTCAATGCCCATAAGTCG
1 AAGTTAATGGCAC-CCTTTCAAAGCCCACAAG-TCAGTGGCAC-CCTTCCAAAGCCTACAAGTCA
* * *
1827886 GTGGCA-CAC--TTTTCAAAGCCCAC
63 GTGGCACCCCTTTTTTCAGAGGCCAC
* * * * * *
1827909 AAGTCT-ATGGCACACCTTTCCGAAGCCCACAAGTGAATGGCATACTTTCCAAAGCCCACAAGTC
1 AAGT-TAATGGCAC-CCTTT-CAAAGCCCACAAGTCAGTGGCA-CCCTTCCAAAGCCTACAAGTC
* *
1827973 AGTGGCACCTCC--TTTT-A-ATGCGTAC
62 AGTGGCACC-CCTTTTTTCAGAGGC-CAC
* * * * * * ** *
1827998 AAGTCAGTGGCATCCCTTTTCAAAGCTCACAAGTCCGTGCCACCCTTCCAAAGCCCACATTTTAG
1 AAGTTAATGGCA-CCC-TTTCAAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCCTACAAGTCAG
* ** * *
1828063 TGG---CTC-TTTCCCAAAGCCCAC
64 TGGCACCCCTTTTTTCAGAGGCCAC
* ** * * * * * *
1828084 AAGTTAGTTACACCCTTTCGAAGCCCATAAGTTAGTGGCACCCATTTTCAAAGCCCACAAGTTAG
1 AAGTTAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCC--TTCCAAAGCCTACAAGTCAG
* * * * *
1828149 TTGCA-CCCGTTTTT-AAAGCCCAT
64 TGGCACCCCTTTTTTCAGAGGCCAC
* ** * ** * * * *
1828172 AAGTCAGGGGCACCCTTCCAAAGCCCACAAGTCAACGGCACCATTTCAAAGACC-ATAAGTTAGT
1 AAGTTAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTCCAAAG-CCTACAAGTCAGT
* *
1828236 GGCA-CAC--TTTTCA-ATGCCCAC
65 GGCACCCCTTTTTTCAGA-GGCCAC
* * * * * * * * * *
1828257 AAGTTAGTGGCACACTTTTTAAGGACCACAAATCGGTGGCACCCCTTTTCGAAGTCTACAAGTCA
1 AAGTTAATGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCA-CCC-TTCCAAAGCCTACAAGTCA
1828322 GTGGCA-CCCTTTTT
63 GTGGCACCCCTTTTT
1828336 AAAGTCGAGA
Statistics
Matches: 783, Mismatches: 180, Indels: 140
0.71 0.16 0.13
Matches are distributed among these distances:
84 68 0.09
85 117 0.15
86 154 0.20
87 112 0.14
88 237 0.30
89 43 0.05
90 52 0.07
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (88 bp):
AAGTTAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCCTACAAGTCAGTG
GCACCCCTTTTTTCAGAGGCCAC
Found at i:1828457 original size:31 final size:31
Alignment explanation
Indices: 1828351--1828555 Score: 133
Period size: 31 Copynumber: 6.8 Consensus size: 31
1828341 CGAGAAGTCA
**
1828351 GTGGCAACTCTTT-TCAAAGCCCACACAAAATG
1 GTGGC-AC-CTTTGTCAAAGCCCACACAAGTTG
* * **
1828383 GT-GCACCTTT-CCAAA-ACC-CACAAGTCA
1 GTGGCACCTTTGTCAAAGCCCACACAAGTTG
* * *
1828410 ATGGCACCCTTT-TCAAAGCCTACATAAGTTG
1 GTGGCA-CCTTTGTCAAAGCCCACACAAGTTG
*
1828441 GTGGCACCTTTGTCAAAGCCCGCACAAGTTG
1 GTGGCACCTTTGTCAAAGCCCACACAAGTTG
** *
1828472 GCAGCACC-TTGTCAAAGCCCACGCAAGTTG
1 GTGGCACCTTTGTCAAAGCCCACACAAGTTG
* ** *
1828502 GTGGCACCCTAATCAAAG-CC-CACAAGTTA
1 GTGGCACCTTTGTCAAAGCCCACACAAGTTG
*
1828531 GTGGCATCCCCTT-TCAAAGCCCACA
1 GTGGCA--CCTTTGTCAAAGCCCACA
1828556 AGTCAATGGC
Statistics
Matches: 135, Mismatches: 28, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
27 6 0.04
28 5 0.04
29 30 0.22
30 42 0.31
31 48 0.36
32 4 0.03
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (31 bp):
GTGGCACCTTTGTCAAAGCCCACACAAGTTG
Found at i:1828518 original size:61 final size:59
Alignment explanation
Indices: 1828417--1828555 Score: 145
Period size: 61 Copynumber: 2.3 Consensus size: 59
1828407 TCAATGGCAC
* * * * **
1828417 CCTTTTCAAAGCCTACATAAGTTGGTGGCACCTTTGTCAAAGCCCGCACAAGTTGGCAGCA
1 CCTTGTCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAG-CC-CACAAGTTGGCAGCA
* * *
1828478 CCTTGTCAAAGCCCACGCAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTAGTGGCATCC
1 CCTTGTCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAGCCCACAAG-T--TGGCAGCA
1828540 CCTT-TCAAAGCCCACA
1 CCTTGTCAAAGCCCACA
1828556 AGTCAATGGC
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
59 6 0.09
60 3 0.05
61 46 0.71
62 10 0.15
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (59 bp):
CCTTGTCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTGGCAGCA
Found at i:1828673 original size:58 final size:58
Alignment explanation
Indices: 1825136--1828894 Score: 766
Period size: 59 Copynumber: 64.0 Consensus size: 58
1825126 TCAATGGTAA
* * * * * *
1825136 CCTTCCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAACCCACAAGTCAG-GGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * *
1825192 CCTTTTCAAAGCCCACAAGCCAATGGCACTCCTTTTCAAAGCCCACAAGTCAGTGGCACC
1 CC-TTTCAAAGCCAACAAGTCAATGGCAC-ACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * *
1825252 CCTTTTCAAAGCCAATAAGTCAGTGGCACACTTTTCAAAGCTCACAAGTCAGTGGCACC
1 CC-TTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * ** * *
1825311 CCTTTTGAAAGCCCATACGTTAGGGGCACCCCTTTTCAAAGCTCACAAGTTAGTGGCA-C
1 CC-TTTCAAAGCCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * * * ** *
1825370 CCTTCCAAAACCCACAGGTTAGTGGCCCCCCTTCCAAAGCCTC-TTAGTCAGTGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCC-CACAAGTTAGTGGCACC
** * * * * * **
1825428 TTTTTTAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCATACAAATCGGTGGCA-C
1 CCTTTCAAAGCCAACAAGTCAATGGC-ACACTTTTCAAAGCCC--ACAAGTTAGTGGCACC
* * *** * * * *
1825488 CCATCCAAAG-C-ACAAGTTGGTGGCAC-CTCCTTCTAAAGCGCACACAAGCTAGTAGCAAC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACT-TTTC-AAAGC-C-CACAAGTTAGTGGCACC
* * ** * * * * *
1825547 TCTTTCCAAAGCCCACACAAATCGGTGGC-C-CCTTCCAAAACCCACAAGTCAGGGGCA--
1 CCTTT-CAAAG-CCA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* *** * * *
1825604 CCTTTCCAAAGCCTACATAAGTTGGTGGCAC-CTTTGGCAAAGCCCGCACAAGTTGGCGGCA-C
1 CCTTT-CAAAGCC-A-ACAAGTCAATGGCACACTTT-TCAAAG-CC-CACAAGTTAGTGGCACC
* ** *** * **
1825666 TCAGTCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTAGTGGCATCC
1 CCTTTCAAAG-CCA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCA-CC
* * * * * * * * * *
1825727 TCTTTTAAAGCCCACTAGTCGATGGCACCTCTTTTCAATGCCTACAAGTCAGTGGCATC
1 CCTTTCAAAGCCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * *
1825786 CCTTCTCAAAGCTC-ACAAGTCAGTGGCAC-CCTTCCAAAGCCCACGAGTCAGTGGCA-C
1 CCTT-TCAAAGC-CAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * *
1825843 CCTTTTAAGGCGC-ATAAGTGATTGGCAC-CCTTTCAAAGCGCATAAGTCAGTGGCACC
1 CCTTTCAAAGC-CAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * ** * *
1825900 CCTTTTCAAAGCCCAA-AAGTCAACGGCACCCCTTTTCATAGCTCGCAAGCCATTGCCA-C
1 CC-TTTCAAAG-CCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * ** * **
1825959 CC-TTCTAAAGCCCACAAGTCAGTGGCACTC-TCCCAAAGCCCAGAAGTTAGTTACACC
1 CCTTTC-AAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
** * * * * * * *
1826016 ATTTTCAAAGCCCACAAGTCAGTGGCACACCTATTCAAAGCTCATAAGTCAGGGGCA-C
1 CCTTTCAAAGCCAACAAGTCAATGGCACA-CTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * ** * * * *
1826074 CC-TCCTAAATCCCATAAGTCAGCGGCAC-CCTTTCAAAGCCCACAAGTCAGCGGCACA
1 CCTTTC-AAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * ** *
1826131 CTTTTCAATGCCCACAAGTTAGTGGCATACTTTTCAAGGCCAACAAGTCGGTGGCATCA
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCA-CC
** * * * * * * * * *
1826190 ATTTTCAAAACCCACAAGTTAGTGGCACCCTTTTCAAAGCCGACAAGTCAATGGCAACT
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGC-ACC
** * ** * * * * * *
1826249 ATTTTCAAAGCCCACACAAAAT-GGTGGCACCCATCT-AAAACCCACAAGTTAGGGGCACA
1 CCTTTCAAAG-CCA-AC-AAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
** * * *** * * *
1826308 TTTTTCGAAGCTCGCACAAGTTGGTGGCAC-CTTTGTCAAAGCCCGCATAAGTTGGCGGCA-C
1 CCTTTCAAAGC-C-AACAAGTCAATGGCACACTTT-TCAAAG-CC-CACAAGTTAGTGGCACC
* * * *** * ** *
1826369 CCTATCGAAGCCCACGCAAGTTGGTGGCACCCTAATCAAAGTCCACAAGTTAGTGGCACC
1 CCTTTCAAAG-CCA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * * *
1826429 CCTTTCAAAGCCCACATGTCAGTGGCACCCCTTTCAAAACCCATAAGTCAGTGCCACA
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* ** * * ** * ** * * *
1826487 CTTTTCAAAGCCCCCAAGTCAGTGACACTTTTTTCGAAGCAAACAAGTTGGTGACAACA
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGC-ACC
* * ** * * * * * * ** *
1826546 CTTTTCAAAGCTCACACAAATCGGTAGCTCA-TTTCCAAAACCTATAAGACAGGGGCA-C
1 CCTTTCAAAGC-CA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
*** * ** *
1826604 CCTTTCCAAAGCCCACACAAGTTGGTGGCAC-CTTTGTCAAAGCCCGCACAGGTCGGCGGCA-C
1 CCTTT-CAAAG-CCA-ACAAGTCAATGGCACACTTT-TCAAAG-CC-CACAAGTTAGTGGCACC
** *** * ** *
1826666 CCAATCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTCAGTGGCA-C
1 CCTTTCAAAG-CCA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * *
1826725 CTTTTCAAAGTCC-ACAAGTC-ATAGCACCCCTTTTCAAAGCCCACAAGTCAGTGCCACC
1 CCTTTCAAAG-CCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * *
1826783 CCTTTTCAAAGCCCATAA-CCTAGTGGCAC-CTATTTTCAAAGCCTACAAGTCAGCGACACC
1 CC-TTTCAAAGCCAACAAGTC-AATGGCACAC--TTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * *
1826843 CCTTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTCCAAAGCCCACAGGTTAGTAGC-CC
1 CC-TTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* ** * * *** *
1826900 CCTTCCAAAGCCCCCAAGTTAGTGGCAC-CTTTTCCAAAGCCCACAAGCCGGTGGCAACT
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTT-CAAAGCCCACAAGTTAGTGGC-ACC
* * * ** * * * *
1826959 CTTTTCAAAGCTCATACAAATCGATGGCA-ACCATCCAAAG--CACAAGTTGGTTGCATCT
1 CCTTTCAAAGC-CA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCA-CC
* * ** * * * * *
1827017 CC-TTCTAAAGCCCACCCAAGCTC-GTACCAACTCTTTTCAAAGCCCACACA--AATTGGTAGC
1 CCTTTC-AAAG-CCA-ACAAG-TCAATGGC-ACACTTTTCAAAGCCCACA-AGTTAGTGGCACC
* * ** * * *
1827077 CCTCTTCTAAAACCAACAAATCAGGGGCACCCTTTCCAAAGCCTACACAAGTTAGTGGGA--
1 CCT-TTC-AAAGCCAACAAGTCAATGGCACACTTTTCAAAGCC--CACAAGTTAGTGGCACC
* ** ** *
1827137 CCTTTGGTAAAGCCCGCCCAAGT---TGGCAGCACTCAGTCAAAGCCCGTACAAGTTGGTGGCA-
1 CCTTT--CAAAG-CC-AACAAGTCAATGGCA-CACT-TTTCAAAGCCC--ACAAGTTAGTGGCAC
1827198 C
58 C
* * * * * * * * * * *
1827199 CCTAATCAAAGCCCATAAGTTAGTGGCATCCCTTTTTAAAGCTCACAAGTCAATGGTA-C
1 CCT-TTCAAAGCCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * *
1827258 TCTTCCAAAGCCCACAAGTTAGTGGCGTCA--TTTCAAAGCCCACAAGTCAGTGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGC-ACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * *
1827315 TCTTTTAAAGCCCACAAG-CTAGTGGCACCCTTTTTCAAAGGCCACCAGTGAGTGGCACA
1 CCTTTCAAAGCCAACAAGTC-AATGGCACAC-TTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * *
1827374 CTTTTCAATGCC-ACAAGTCAGTGGCACCTCTTTTCAATGCCTACAAGTCAGTGGCATC
1 CCTTTCAAAGCCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * *
1827432 CCTTCTCAAAGCTC-ACAAGTCAGTGTCAC-CTTTACAATGCCCACAAGTTAGTGGCA-C
1 CCTT-TCAAAGC-CAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
*** * * * ** *
1827489 CCTTTCAAAGCCCGTAAGTCAGTGGCACCCTTTT-AAAGCGCTTAAGTCAGTGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * *
1827546 CCTTTTTTCAGAGGCC-ACAAGTTAATGGCACCATTTTTTAAAGCCCACAAG-TAGGTGGCA-C
1 CC---TTTCA-AAGCCAACAAGTCAATGGCA-CACTTTTCAAAGCCCACAAGTTA-GTGGCACC
* * * * * * *
1827607 TCTTCCAAAGCCTACAAGTTAGTGGCACTCTTTT-AAAGCCAACAAG-TAGTGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * *
1827663 TCTTTCAAAGCCCACAAGTTAGTGGCACACTTTTTAAAACCCACAAGTCAGTGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* *** ** * * * *
1827721 CTTTTCAAAGCCCGTAAGTCGGTGGCAACTCTTTTCAAAGCCCATAAGTCAGCGGCA-C
1 CCTTTCAAAGCCAACAAGTCAATGGC-ACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * ** * * ** *
1827779 CCTTCCAAAGACC-ACAAGTCAATAGCAC-CCCTTCGAAGCCCACAAGTCAGCAGCACA
1 CCTTTCAAAG-CCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * ** *
1827836 CTTTTCAAAGGCC-TCAAGTTC-GTGGCACACTTTTCAATGCCCATAAGTCGGTGGCACA
1 CCTTTCAAA-GCCAACAAG-TCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * *
1827894 CTTTTCAAAGCCCACAAGTCTATGGCACACCTTTCCGAAGCCCACAAGTGAATGGCA-T
1 CCTTTCAAAGCCAACAAGTCAATGGCACA-CTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * ** *
1827952 ACTTTCCAAAGCCCACAAGTCAGTGGCAC-CTCCTTTTAATGCGTACAAGTCAGTGGCATCC
1 CCTTT-CAAAGCCAACAAGTCAATGGCACACT--TTTCAAAGCCCACAAGTTAGTGGCA-CC
* ** * * * **
1828013 CTTTTCAAAGCTC-ACAAGTCCGTGCCAC-CCTTCCAAAGCCCACATTTTAGTGG---C
1 CCTTTCAAAGC-CAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * ** * * *
1828067 TCTTTCCCAAAGCCCACAAGTTAGTTACAC-CCTTTCGAAGCCCATAAGTTAGTGGCACC
1 CCTTT--CAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * * *
1828126 CATTTTCAAAGCCCACAAGTTAGTTGCACCCGTTTTTAAAGCCCATAAGTCAGGGGCA-C
1 C-CTTTCAAAGCCAACAAGTCAATGGCACAC-TTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * *
1828185 CCTTCCAAAGCCCACAAGTCAACGGCAC-CATTTCAAAGACCATAAGTTAGTGGCACA
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * * **
1828242 CTTTTCAATGCCCACAAGTTAGTGGCACACTTTTTAAGGACCACAAATCGGTGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * * * * * * * * *
1828300 CCTTTTCGAAGTCTACAAGTCAGTGGCACCCTTTTTAAAGTCGAGAAGTCAGTGGCAACT
1 CC-TTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGC-ACC
* * * * *
1828360 CTTTTCAAAGCCCACACAA---AATGGTGCAC-CTTTCCAAAACCCACAAGTCAATGGCACC
1 CCTTTCAAAG-CCA-ACAAGTCAAT-G-GCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * *** *
1828418 CTTTTCAAAGCCTACATAAGTTGGTGGCAC-CTTTGTCAAAGCCCGCACAAG-T--TGGCAGCA
1 CCTTTCAAAGCC-A-ACAAGTCAATGGCACACTTT-TCAAAG-CC-CACAAGTTAGTGGCA-CC
* *** * **
1828478 CCTTGTCAAAGCCCACGCAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTAGTGGCATCC
1 CCTT-TCAAAG-CCA-ACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCA-CC
* * * * *
1828540 CCTTTCAAAGCCCACAAGTCAATGGCACCCCTTTCAAAGCCCACAAGTCAATGGCACC
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
* * * *
1828598 CCCTTCAAAACCTACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACT
1 CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
** * ** * * * * * *
1828656 TGTTTCAAAGCAAACAAGTCGGTGGCAACTCTTTTCAAAGCTCA-TAG-AAATCGGTATCC
1 CCTTTCAAAGCCAACAAGTCAATGGC-ACACTTTTCAAAGCCCACAAGTTAGT-GGCA-CC
* * * * * * * *
1828715 CCTTTCCAAAACCTATAAGTTAAGGGCACCCTTTCCAAAGCCCACACAAGTTGGTGGCA-C
1 CCTTT-CAAAGCCAACAAGTCAATGGCACACTTTTCAAAG-CC-CACAAGTTAGTGGCACC
* * * * *** *
1828775 CTTTGTCAAAGCCCGCACAAGTCGACGGCAC-CCAATCAAAGCCCACACAAGTTGGTGGCA-C
1 CCTT-TCAAAG-CC-AACAAGTCAATGGCACACTTTTCAAAG-CC-CACAAGTTAGTGGCACC
* * * * * * *
1828836 CCTAATCTAAGCCCACAAGTCAGTGGCGC-CTTTTCAAAGCCCACAAGTCAGTAGCACC
1 CCT-TTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
1828894 C
1 C
1828895 TGTCGCAACG
Statistics
Matches: 2783, Mismatches: 717, Indels: 404
0.71 0.18 0.10
Matches are distributed among these distances:
54 4 0.00
55 8 0.00
56 296 0.11
57 305 0.11
58 668 0.24
59 675 0.24
60 395 0.14
61 292 0.10
62 124 0.04
63 5 0.00
64 11 0.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (58 bp):
CCTTTCAAAGCCAACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACC
Found at i:1828774 original size:31 final size:30
Alignment explanation
Indices: 1828739--1828880 Score: 126
Period size: 31 Copynumber: 4.7 Consensus size: 30
1828729 ATAAGTTAAG
1828739 GGCACCCTTTCCAAAGCCCACACAAGTTGGT
1 GGCACCCTTT-CAAAGCCCACACAAGTTGGT
* * * **
1828770 GGCACCTTTGTCAAAGCCCGCACAAGTCGAC
1 GGCACCCTT-TCAAAGCCCACACAAGTTGGT
**
1828801 GGCACCCAATCAAAGCCCACACAAGTTGGT
1 GGCACCCTTTCAAAGCCCACACAAGTTGGT
* * **
1828831 GGCACCCTAATCTAAG-CC-CACAAGTCAGT
1 GGCACCCT-TTCAAAGCCCACACAAGTTGGT
* *
1828860 GGCGCCTTTTCAAAGCCCACA
1 GGCACCCTTTCAAAGCCCACA
1828881 AGTCAGTAGC
Statistics
Matches: 87, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
28 5 0.06
29 17 0.20
30 28 0.32
31 36 0.41
32 1 0.01
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (30 bp):
GGCACCCTTTCAAAGCCCACACAAGTTGGT
Found at i:1828861 original size:29 final size:29
Alignment explanation
Indices: 1828801--1828895 Score: 95
Period size: 28 Copynumber: 3.3 Consensus size: 29
1828791 ACAAGTCGAC
**
1828801 GGCACCC-AATCAAAGCCCACACAAGTTGGT
1 GGCACCCTAATCAAAG-CC-CACAAGTCAGT
*
1828831 GGCACCCTAATCTAAGCCCACAAGTCAGT
1 GGCACCCTAATCAAAGCCCACAAGTCAGT
* **
1828860 GGC-GCCTTTTCAAAGCCCACAAGTCAGT
1 GGCACCCTAATCAAAGCCCACAAGTCAGT
*
1828888 AGCACCCT
1 GGCACCCT
1828896 GTCGCAACGT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
28 23 0.43
29 15 0.28
30 9 0.17
31 7 0.13
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.17
Consensus pattern (29 bp):
GGCACCCTAATCAAAGCCCACAAGTCAGT
Found at i:1832073 original size:20 final size:20
Alignment explanation
Indices: 1832020--1832074 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1832010 AAATTCCCAG
**
1832020 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
1832040 ATGTATCGATACATTGAGT-A
1 ATGTATCGATACATTGA-TCA
1832060 ATGTATCGATACATT
1 ATGTATCGATACATT
1832075 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:1832430 original size:30 final size:29
Alignment explanation
Indices: 1832393--1834463 Score: 800
Period size: 30 Copynumber: 70.2 Consensus size: 29
1832383 GTCTACACAC
* *
1832393 CCCTTTTCAAAGCCCACAAGTCAGTAGCG
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1832422 CCCATTTTCAAAGCCTACATGTCAGTGGCA
1 CCC-TTTTCAAAGCCCACAAGTCAGTGGCA
*
1832452 CCTCTTTTCAAAGCCTACAAGTCAGTGGCA
1 CC-CTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1832482 CCCCTTTTCAAAGCCCACAAGTTATTGGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
1832512 CTC-TTCCAAAGCCCACAGGTTC-GCGAC-
1 CCCTTTTCAAAGCCCACAAG-TCAGTGGCA
* * * * *
1832539 CCCCTTCCATAGCCCCCAAGTTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
1832568 -GCTTTTCCAAGGCCAACAAGTCGGTGGCAA
1 CCCTTTT-CAAAGCCCACAAGTCAGTGGC-A
* * * * *
1832598 CACTTTTTAAAGCCTATACAAATCGGTGGCA
1 CCCTTTTCAAAGCC--CACAAGTCAGTGGCA
* * * **
1832629 ACC-ATCCAAAG--CACAAGTTGGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * ** *
1832655 -TCTCTTTCTAAAGCCCACCCAAACTC-GCACGAA
1 CCCT-TTTC-AAAGCCCA--C-AAGTCAG-TGGCA
* * * * *
1832688 CTCTTTTCAAAGGCCAC-AG-AAATCGGTA
1 CCCTTTTCAAAGCCCACAAGTCAGT-GGCA
* * *
1832716 GCCCTCTTCCAAAACCAACAAGTCAG-GGCA
1 -CCCT-TTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
1832746 CGCTTTCCAAAGCCATACAAGTTAGTCGCA
1 CCCTTTTCAAAGCC-CACAAGTCAGTGGCA
* * ** **
1832776 -CCTTTGGCAAAGCTTGCA-AAGTTGGCAGCA
1 CCCTTT-TCAAAGC--CCACAAGTCAGTGGCA
** **
1832806 CCC-AGTCAAAGCCCAGACAAGTTGGTGGCA
1 CCCTTTTCAAAGCCC--ACAAGTCAGTGGCA
** * *
1832836 CCCTAATCAAAGCGCACAAGTTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *** *
1832865 TCCCCTTTT-TAAGTGTACAAGTCAATGGCA
1 --CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1832895 -CCTTTCCAAAGCCTACTAGTCAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
1832923 -CCTTTTCAAAGCCCACAAG-CTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTC-AGTGGCA
* * * * *
1832951 CACCTTTTCAATGCCCACAGGTTAGGGGTA
1 C-CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
1832981 CACTTTTCGAAGCCTACAAGTCAATGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833010 CCTCTTTTCAATGCCTACAAGTCAGTGGCA
1 CC-CTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
1833040 ACCTTTCTCGAAGCTCACAAGTCAGTGACA
1 CCCTTT-TCAAAGCCCACAAGTCAGTGGCA
* * * **
1833070 CTC-TTCCAAAGCCCACAAATCAGCAGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
** * *
1833098 CCC-TTTCAAAGCTAATAAGTTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1833126 -CCTTTTTAAAGCCCATAAGTTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1833154 CCCATTTTCCAACCCCACAAATCAGTGGCA
1 CCC-TTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833184 CCCCTTTTCAAAACCCACAAGTCAGTAGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833214 -CCTCTTTCAAAGCCCATAAGTTAGTGGCA
1 CCCT-TTTCAAAGCCCACAAGTCAGTGGCA
* * * * * *
1833243 CCC-TTCCAAATCTCACAAGTCAATCGTA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833271 CCCTTTT-AAAGCCCATAAGT-TGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * ** *
1833298 CACTTTCCAAAATCCACAAGTCGGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
*
1833327 CCCCTTTTCAAAGCCCGCAAG-CTAGTGGCA
1 -CCCTTTTCAAAGCCCACAAGTC-AGTGGCA
* * *
1833357 -CCTTTTACAAAGCCCGCAAG-CTTGTAGCA
1 CCCTTTT-CAAAGCCCACAAGTC-AGTGGCA
* * *
1833386 CCCTTTTCAAAGCCAACAAATCAGTGGAAA
1 CCCTTTTCAAAGCCCACAAGTCAGTGG-CA
* * *
1833416 CTCTTTTCAAAGCCCATACAAATCGGTGGCA
1 CCCTTTTCAAAGCCC--ACAAGTCAGTGGCA
* ** * *
1833447 CCC-TTCCAAAATCCACAGGTCAGGGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * **
1833475 CCCTTTCCAAAGCCTACCCAAGTTGGTGGCA
1 CCCTTTTCAAAGCC--CACAAGTCAGTGGCA
* *
1833506 -CCTTTGTCAAAACCTGCATAAGT---TGGCA
1 CCCTTT-TCAAAGCC--CACAAGTCAGTGGCA
** *
1833534 GCACCTTTGTCAAAGCCCGCACAAGTTGGCGGCA
1 -C-CCTTT-TCAAAG-CC-CACAAGTCAGTGGCA
** * * **
1833568 CCCTAATCAAAGCGCACAAGTCAATATCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
** *
1833597 TATCTTTTCAAAGCCTACAAGTCAGTGGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
1833627 CTAC-TTTCAATGCCCATAAGTCAATGGCA
1 C-CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833656 -CTTATTTCAATGCCCACAAGTTC-GTGGCA
1 CCCT-TTTCAAAGCCCACAAG-TCAGTGGCA
* * * * **
1833685 CCTTTTTGAAAGCTCTCAAGTTGGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1833714 GCTCTTTTCAAATCCCACACAATTCAGTGGCA
1 -CCCTTTTCAAA-GCC-CACAAGTCAGTGGCA
* *
1833746 CCC-TTCCAAAAGCCC-CAAGTCTGTGGCA
1 CCCTTTTC-AAAGCCCACAAGTCAGTGGCA
* * **
1833774 CCATTTCCAAAGCCCACACAAGTTGGTGGCA
1 CCCTTTTCAAAG-CC-CACAAGTCAGTGGCA
* * ** *
1833805 -CCTTTGTCGAAGCTCGCAAAAGTTGGCGGCA
1 CCCTTT-TCAAAGC-C-CACAAGTCAGTGGCA
* *** *
1833836 -TCGAATCAAAGCCCACATGT--GTTGGTAACA
1 CCCTTTTCAAAGCCCACAAGTCAG-TGG---CA
1833866 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833895 CCCTTTT-AAAGCCCACAAGTTAGTGTCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
1833923 CTCTTTTTAAAGCCCAGAAGTCAGTGGTA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
1833952 GCACTTTTC-AGGCCCACAAGTCAGTGGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1833981 CACTTTTTAAAGCCCCCAAG-CTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTC-AGTGGCA
* *
1834010 -CCTATCTTCAAAGCTCATAAG-CTAGTGGCA
1 CCCT-T-TTCAAAGCCCACAAGTC-AGTGGCA
*
1834040 CCCCTTTTCAAAGCCCACAAGTCAATGGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1834070 CCTCTTTTCAAAGCTCACAAGTCGGTGGTAA
1 CC-CTTTTCAAAGCCCACAAGTCAGTGG-CA
* * **
1834101 CTCTTTTCAAAGCCCACACAAATTGGTGGCA
1 CCCTTTTCAAAG-CC-CACAAGTCAGTGGCA
* *
1834132 CCC-TTCCAAAACCCACAAGTCAAG-GGCA
1 CCCTTTTCAAAGCCCACAAGTC-AGTGGCA
* **
1834160 CCCTTTCCAAAGCCCACATAAGTTGGTGGCA
1 CCCTTTTCAAAGCCCAC--AAGTCAGTGGCA
** *
1834191 -CCTTTGTCAAAGCCCTCACAAGTTGGCGGCA
1 CCCTTT-TCAAAG-CC-CACAAGTCAGTGGCA
** **
1834222 CCC-AATCAAAGCCCACACAAGTTGGTGGCA
1 CCCTTTTCAAAG-CC-CACAAGTCAGTGGCA
** * ** *
1834252 CCCTAATCAAAACCCTTATG-CGAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTC-AGTGGCA
* * *
1834281 -CCTTTTTAAAGCCCATAAGTAAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
*
1834309 CCCCTTTTCACAGCCCACAAGTCAGTGGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
**
1834339 CCCATTTTCAAAGCCTGCAAGTCAGTGGCA
1 CCC-TTTTCAAAGCCCACAAGTCAGTGGCA
* * *
1834369 TCC-TTCCAAAGCCCACAAGTTAGTGGCA
1 CCCTTTTCAAAGCCCACAAGTCAGTGGCA
* * **
1834397 CCTATTTTCAAGGCTTACAAGT-ATGTGGCA
1 CC-CTTTTCAAAGCCCACAAGTCA-GTGGCA
* *
1834427 CCCCTTTTCAAA-CCCATAAGTTAGTGGCA
1 -CCCTTTTCAAAGCCCACAAGTCAGTGGCA
1834456 CCTCTTTT
1 CC-CTTTT
1834464 AACCGCTAGT
Statistics
Matches: 1531, Mismatches: 378, Indels: 266
0.70 0.17 0.12
Matches are distributed among these distances:
25 1 0.00
26 13 0.01
27 24 0.02
28 329 0.21
29 341 0.22
30 559 0.37
31 173 0.11
32 70 0.05
33 14 0.01
34 7 0.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (29 bp):
CCCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:1832780 original size:29 final size:28
Alignment explanation
Indices: 1832722--1832780 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
1832712 GGTAGCCCTC
*
1832722 TTCCAAAACCAACAAGTCAGGGCACGCT
1 TTCCAAAACCAACAAGTCAGCGCACGCT
* *
1832750 TTCCAAAGCCATACAAGTTAGTCGCAC-CT
1 TTCCAAAACCA-ACAAGTCAG-CGCACGCT
1832779 TT
1 TT
1832781 GGCAAAGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 10 0.38
29 12 0.46
30 4 0.15
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (28 bp):
TTCCAAAACCAACAAGTCAGCGCACGCT
Found at i:1833287 original size:56 final size:57
Alignment explanation
Indices: 1833178--1833342 Score: 165
Period size: 56 Copynumber: 2.9 Consensus size: 57
1833168 CCACAAATCA
* * * *
1833178 GTGGCACCCCTTTTCAAAACCCACAAGTCAGTAGCACCTCTTTCAAAGCCCATAAGTT
1 GTGGCACACC-TTCCAAAATCCACAAGTCAATAGCACCTCTTTCAAAGCCCATAAGTT
* * *
1833236 AGTGGCAC-CCTTCC-AAATCTCACAAGTCAATCGTACC-CTTTTAAAGCCCATAAGTT
1 -GTGGCACACCTTCCAAAATC-CACAAGTCAATAGCACCTCTTTCAAAGCCCATAAGTT
* ** * *
1833292 GTGGCACACTTTCCAAAATCCACAAGTCGGTGGCACCCCTTTTCAAAGCCC
1 GTGGCACACCTTCCAAAATCCACAAGTCAATAGCACCTC-TTTCAAAGCCC
1833343 GCAAGCTAGT
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
55 7 0.08
56 40 0.45
57 23 0.26
58 12 0.13
59 7 0.08
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (57 bp):
GTGGCACACCTTCCAAAATCCACAAGTCAATAGCACCTCTTTCAAAGCCCATAAGTT
Found at i:1833377 original size:29 final size:29
Alignment explanation
Indices: 1833328--1833399 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
1833318 TCGGTGGCAC
*
1833328 CCCTTTTCAAAGCCCGCAAGCTAGTGGCA
1 CCCTTTTCAAAGCCCGCAAGCTAGTAGCA
*
1833357 -CCTTTTACAAAGCCCGCAAGCTTGTAGCA
1 CCCTTTT-CAAAGCCCGCAAGCTAGTAGCA
1833386 CCCTTTTCAAAGCC
1 CCCTTTTCAAAGCC
1833400 AACAAATCAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 6 0.15
29 27 0.69
30 6 0.15
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.24
Consensus pattern (29 bp):
CCCTTTTCAAAGCCCGCAAGCTAGTAGCA
Found at i:1833387 original size:143 final size:144
Alignment explanation
Indices: 1833055--1833390 Score: 353
Period size: 143 Copynumber: 2.3 Consensus size: 144
1833045 TCTCGAAGCT
* * * * * * * *
1833055 CACAAGTCAGT-G-ACACTCTTCCAAAGCCCACAAATCAGCAGCACCCTTTCAAAGCTAATAAGT
1 CACAAGTCAGTAGCAC-CTCTTTCAAAGCCCACAAGTTAGTAGCACCCTTCCAAATCTCACAAGT
* * * * * * *
1833118 TAGTGGCACCTTTTTAAAGCCCATAAGTTAGTGGCACCCATTTTCCAACCCCACAAATCAGTGGC
65 CAATCGTACCCTTTTAAAGCCCATAAGTTAGTGGCA-CCACTTTCCAAACCCACAAATCAGTGGC
1833183 ACCCCTTTTCAAAACC
129 ACCCCTTTTCAAAACC
* *
1833199 CACAAGTCAGTAGCACCTCTTTCAAAGCCCATAAGTTAGTGGCACCCTTCCAAATCTCACAAGTC
1 CACAAGTCAGTAGCACCTCTTTCAAAGCCCACAAGTTAGTAGCACCCTTCCAAATCTCACAAGTC
* * *
1833264 AATCGTACCCTTTTAAAGCCCATAAGTT-GTGGCA-CACTTTCCAAAATCCACAAGTCGGTGGCA
66 AATCGTACCCTTTTAAAGCCCATAAGTTAGTGGCACCACTTTCC-AAACCCACAAATCAGTGGCA
*
1833327 CCCCTTTTCAAAGCC
130 CCCCTTTTCAAAACC
* * *
1833342 CGCAAG-CTAGTGGCACCT-TTTACAAAGCCCGCAAGCTT-GTAGCACCCTT
1 CACAAGTC-AGTAGCACCTCTTT-CAAAGCCCACAAG-TTAGTAGCACCCTT
1833391 TTCAAAGCCA
Statistics
Matches: 160, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
142 11 0.07
143 65 0.41
144 19 0.12
145 63 0.39
146 2 0.01
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.24
Consensus pattern (144 bp):
CACAAGTCAGTAGCACCTCTTTCAAAGCCCACAAGTTAGTAGCACCCTTCCAAATCTCACAAGTC
AATCGTACCCTTTTAAAGCCCATAAGTTAGTGGCACCACTTTCCAAACCCACAAATCAGTGGCAC
CCCTTTTCAAAACC
Found at i:1833580 original size:31 final size:31
Alignment explanation
Indices: 1833493--1833569 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
1833483 AAAGCCTACC
* * *
1833493 CAAGTTGGTGGCACCTTTGTCAAAACCTGCA
1 CAAGTTGGCGGCACCTTTGTCAAAGCCCGCA
* *
1833524 TAAGTTGGCAGCACCTTTGTCAAAGCCCGCA
1 CAAGTTGGCGGCACCTTTGTCAAAGCCCGCA
1833555 CAAGTTGGCGGCACC
1 CAAGTTGGCGGCACC
1833570 CTAATCAAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (31 bp):
CAAGTTGGCGGCACCTTTGTCAAAGCCCGCA
Found at i:1833647 original size:29 final size:29
Alignment explanation
Indices: 1833602--1833685 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
1833592 TATCATATCT
* *
1833602 TTTCAAAGCCTACAAGTCAGTGGCAC-TA
1 TTTCAATGCCCACAAGTCAGTGGCACTTA
* *
1833630 CTTTCAATGCCCATAAGTCAATGGCACTTA
1 -TTTCAATGCCCACAAGTCAGTGGCACTTA
1833660 TTTCAATGCCCACAAGTTC-GTGGCAC
1 TTTCAATGCCCACAAG-TCAGTGGCAC
1833686 CTTTTTGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 43 0.91
30 4 0.09
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (29 bp):
TTTCAATGCCCACAAGTCAGTGGCACTTA
Found at i:1833803 original size:31 final size:30
Alignment explanation
Indices: 1833701--1833809 Score: 93
Period size: 31 Copynumber: 3.6 Consensus size: 30
1833691 TGAAAGCTCT
* *
1833701 CAAGTTGGTGGCAGCTCTTTTCAAATCCCACA
1 CAAGTTGGTGGCA-C-CTTTCCAAAGCCCACA
* *
1833733 CAA-TTCAGTGGCACCCTTCCAAAAG-CC-C-
1 CAAGTT-GGTGGCACCTTTCC-AAAGCCCACA
1833761 CAAGTCT-GTGGCACCATTTCCAAAGCCCACA
1 CAAGT-TGGTGGCACC-TTTCCAAAGCCCACA
1833792 CAAGTTGGTGGCACCTTT
1 CAAGTTGGTGGCACCTTT
1833810 GTCGAAGCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
28 15 0.24
29 8 0.13
30 12 0.19
31 19 0.30
32 9 0.14
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (30 bp):
CAAGTTGGTGGCACCTTTCCAAAGCCCACA
Found at i:1833987 original size:58 final size:57
Alignment explanation
Indices: 1832881--1834465 Score: 257
Period size: 59 Copynumber: 26.9 Consensus size: 57
1832871 TTTTAAGTGT
* * * * *
1832881 ACAAGTCAATGGCAC-CTTTCCAAAGCCTACTAGTCAGTGGCAC-CTTTTCAAAGCCC
1 ACAAGTCAGTGGCACACTTT-TAAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * * * ** *
1832937 ACAAG-CTAGTGGCACACCTTTTCAATGCCCACAGGTTAGGGGTACACTTTTCGAAGCCT
1 ACAAGTC-AGTGGCACA-CTTTT-AAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * * ** *
1832996 ACAAGTCAATGGCACCTCTTTTCAATGCCTACAAGTCAGTGGCA-ACCTTTCTCGAAGCTC
1 ACAAGTCAGTGGCA-CACTTTT-AAAGCCCACAAGTCAGTGGCACA-CTTT-TTAAAGCCC
* * ** * ** * * **
1833056 ACAAGTCAGTGACACTCTTCCAAAGCCCACAAATCAGCAGCAC-CCTTTCAAAGCTA
1 ACAAGTCAGTGGCACACTTTTAAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * * * ** *
1833112 ATAAGTTAGTGGCAC-CTTTTTAAAGCCCATAAGTTAGTGGCACCCATTTTCCAACCCC
1 ACAAGTCAGTGGCACAC-TTTTAAAGCCCACAAGTCAGTGGCACAC-TTTTTAAAGCCC
* * * * *
1833170 ACAAATCAGTGGCACCCCTTTTCAAAACCCACAAGTCAGTAGCAC-CTCTTTCAAAGCCC
1 ACAAGTCAGTGGCA-CACTTTT-AAAGCCCACAAGTCAGTGGCACACT-TTTTAAAGCCC
* * * ** * * * * * *
1833229 ATAAGTTAGTGGCACCCTTCCAAATCTCACAAGTCAATCGTAC-CCTTTTAAAGCCC
1 ACAAGTCAGTGGCACACTTTTAAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * ** * * *
1833285 ATAAGT-TGTGGCACACTTTCCAAAATCCACAAGTCGGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTCAGTGGCACACTTT-TAAAGCCCACAAGTCAGTGGCA-CACTTTTTAAAGCCC
* * * * * * *
1833343 GCAAG-CTAGTGGCAC-CTTTTACAAAGCCCGCAAG-CTTGTAGCACCCTTTTCAAAGCCA
1 ACAAGTC-AGTGGCACACTTTT--AAAGCCCACAAGTC-AGTGGCACACTTTTTAAAGCCC
* * * * * * ** **
1833401 ACAAATCAGTGGAAACTCTTTTCAAAGCCCATACAAATCGGTGGCAC-CCTTCCAAAATCC
1 ACAAGTCAGTGG-CACACTTTT-AAAGCCC--ACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * * * ** * *
1833461 ACAGGTCAGGGGCACCCTTTCCAAAGCCTACCCAAGTTGGTGGCAC-CTTTGTCAAAACCTGC
1 ACAAGTCAGTGGCACACTTT-TAAAGCC--CACAAGTCAGTGGCACACTTT-TTAAAGCC--C
* ** * * ** * *
1833523 ATAAGT---TGGCAGCACCTTTGTCAAAGCCCGCACAAGTTGGCGGCACCCTAATCAAAGCGC
1 ACAAGTCAGTGGCA-CA-CTTT-T-AAAG-CC-CACAAGTCAGTGGCACACTTTTTAAAGCCC
* ** * * * *
1833583 ACAAGTCAATATCATATCTTTTCAAAGCCTACAAGTCAGTGGCACTAC-TTTCAATGCCC
1 ACAAGTCAGTGGCACA-CTTTT-AAAGCCCACAAGTCAGTGGCAC-ACTTTTTAAAGCCC
* * * * *
1833642 ATAAGTCAATGGCACTTA-TTTCAATGCCCACAAGTTC-GTGGCAC-CTTTTTGAAAGCTC
1 ACAAGTCAGTGGCAC--ACTTTTAAAGCCCACAAG-TCAGTGGCACACTTTTT-AAAGCCC
* ** * * * * ***
1833700 TCAAGTTGGTGGCAGCTCTTTTCAAATCCCACACAATTCAGTGGCACCCTTCCAAAAGCCC
1 ACAAGTCAGTGGCA-CACTTTT-AAA-GCC-CACAAGTCAGTGGCACACTTTTTAAAGCCC
* * ** **
1833761 -CAAGTCTGTGGCAC-CATTTCCAAAGCCCACACAAGTTGGTGGCAC-CTTTGTCGAAGCTCGC
1 ACAAGTCAGTGGCACAC-TTT-TAAAG-CC-CACAAGTCAGTGGCACACTTT-TTAAAGC-C-C
* ** * * * * * *
1833822 AAAAGTTGGCGGCATCGA--ATCAAAGCCCACATGT--GTTGGTAACACCCTTTTCAAAGCCC
1 ACAAGTCAGTGGCA-C-ACTTTTAAAGCCCACAAGTCAG-TGG---CACACTTTTTAAAGCCC
* * * *
1833881 ACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGTCACTCTTTTTAAAGCCC
1 ACAAGTCAGTGGCACACTTTTAAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * *
1833938 AGAAGTCAGTGGTAGCACTTTTCAGGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
1 ACAAGTCAGTGGCA-CACTTTTAAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
* * * * *
1833996 CCAAG-CTAGTGGCAC-CTATCTTCAAAGCTCATAAG-CTAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTC-AGTGGCACACT-T-TT-AAAGCCCACAAGTC-AGTGGCA-CACTTTTTAAAGCCC
* * * * *
1834056 ACAAGTCAATGGCACCTCTTTTCAAAGCTCACAAGTCGGTGGTA-ACTCTTTTCAAAGCCCAC
1 ACAAGTCAGTGGCA-CACTTTT-AAAGCCCACAAGTCAGTGGCACACT-TTTT-AAAG-CC-C
* ** * ** * * **
1834118 ACAAATTGGTGGCACCCTTCCAAAACCCACAAGTCAAG-GGCACCCTTTCCAAAGCCC
1 ACAAGTCAGTGGCACACTTTTAAAGCCCACAAGTC-AGTGGCACACTTTTTAAAGCCC
** ** * *** *
1834175 ACATAAGTTGGTGGCAC-CTTTGTCAAAGCCCTCACAAGTTGGCGGCAC-CCAATCAAAGCCCAC
1 AC--AAGTCAGTGGCACACTTT-T-AAAG-CC-CACAAGTCAGTGGCACACTTTTTAAAG-CC-C
** * * * * ** *
1834238 ACAAGTTGGTGGCACCCTAATCAAAACCCTTATG-CGAGTGGCAC-CTTTTTAAAGCCC
1 ACAAGTCAGTGGCACACT-TTTAAAGCCCACAAGTC-AGTGGCACACTTTTTAAAGCCC
* * * * * * *
1834295 ATAAGTAAGTGGCACCCCTTTTCACAGCCCACAAGTCAGTGGCACCCATTTTCAAAGCCT
1 ACAAGTCAGTGGCA-CACTTTT-AAAGCCCACAAGTCAGTGGCACAC-TTTTTAAAGCCC
* ** * * **
1834355 GCAAGTCAGTGGCATC-CTTCCAAAGCCCACAAGTTAGTGGCAC-CTATTTTCAAGGCTT
1 ACAAGTCAGTGGCA-CACTTTTAAAGCCCACAAGTCAGTGGCACACT-TTTT-AAAGCCC
* * *
1834413 ACAAGT-ATGTGGCACCCCTTTTCAAA-CCCATAAGTTAGTGGCAC-CTCTTTTAA
1 ACAAGTCA-GTGGCA-CACTTTT-AAAGCCCACAAGTCAGTGGCACACT-TTTTAA
1834466 CCGCTAGTTG
Statistics
Matches: 1129, Mismatches: 284, Indels: 230
0.69 0.17 0.14
Matches are distributed among these distances:
55 12 0.01
56 85 0.08
57 78 0.07
58 259 0.23
59 317 0.28
60 192 0.17
61 93 0.08
62 81 0.07
63 12 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (57 bp):
ACAAGTCAGTGGCACACTTTTAAAGCCCACAAGTCAGTGGCACACTTTTTAAAGCCC
Found at i:1834202 original size:31 final size:30
Alignment explanation
Indices: 1834167--1834262 Score: 120
Period size: 31 Copynumber: 3.1 Consensus size: 30
1834157 GCACCCTTTC
* ***
1834167 CAAAGCCCACATAAGTTGGTGGCACCTTTGT
1 CAAAGCCCACACAAGTTGGTGGCACC-CAAT
* *
1834198 CAAAGCCCTCACAAGTTGGCGGCACCCAAT
1 CAAAGCCCACACAAGTTGGTGGCACCCAAT
1834228 CAAAGCCCACACAAGTTGGTGGCACCCTAAT
1 CAAAGCCCACACAAGTTGGTGGCACCC-AAT
1834259 CAAA
1 CAAA
1834263 ACCCTTATGC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
30 26 0.46
31 30 0.54
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (30 bp):
CAAAGCCCACACAAGTTGGTGGCACCCAAT
Found at i:1834262 original size:61 final size:58
Alignment explanation
Indices: 1834107--1834255 Score: 158
Period size: 61 Copynumber: 2.5 Consensus size: 58
1834097 GTAACTCTTT
* * **
1834107 TCAAAGCCCACACAAATTGGTGGCACCCTTCCAAAACC-CACAAGTCAAGGGCACCCTT
1 TCAAAGCCCACACAAGTTGGTGGCACCCTT-CAAACCCTCACAAGTCAAGGGCACCCAA
* * **
1834165 TCCAAAGCCCACATAAGTTGGTGGCACCTTTGTCAAAGCCCTCACAAGT-TGGCGGCACCCAA
1 T-CAAAGCCCACACAAGTTGGTGGCACC-CT-TCAAA-CCCTCACAAGTCAAG-GGCACCCAA
1834227 TCAAAGCCCACACAAGTTGGTGGCACCCT
1 TCAAAGCCCACACAAGTTGGTGGCACCCT
1834256 AATCAAAACC
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
58 1 0.01
59 24 0.32
60 6 0.08
61 29 0.39
62 15 0.20
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (58 bp):
TCAAAGCCCACACAAGTTGGTGGCACCCTTCAAACCCTCACAAGTCAAGGGCACCCAA
Found at i:1834459 original size:386 final size:386
Alignment explanation
Indices: 1833660--1834463 Score: 980
Period size: 386 Copynumber: 2.1 Consensus size: 386
1833650 ATGGCACTTA
* * * * * *
1833660 TTTCAATGCCCACAAGTTCGTGGCACCT-TTTTGAAAGCTCTCAAGTTGGTGGCAGCTCTTTTCA
1 TTTCAAAGCCCACAAGTTAGTGGCACCTCTTTTCAAAGCTCACAAGTCGGTGGCAACTCTTTTCA
* *
1833724 AATCCCACACAATTCAGTGGCACCCTTCCAAAAGCCCCAAGTCTGTGGCACCATTTCCAAAGCCC
66 AAGCCCACACAATTCAGTGGCACCCTTCCAAAAGCCCCAAGTCAGTGGCACCATTTCCAAAGCCC
* * * * *
1833789 ACACAAGTTGGTGGCACCTTTGTCGAAGCTCGCAAAAGTTGGCGGCATCGAATCAAAGCCCACAT
131 ACACAAGTTGGTGGCACCTTTGTCAAAGCCCGCAAAAGTTGGCGGCACCCAATCAAAGCCCACAC
** ** * *
1833854 GTGTTGGTAACACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAGT
196 AAGTTGGTAACACCCTAATCAAAACCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTAAGT
* * * * * * *
1833919 GTCACTCTTTTTAAAGCCCAGAAGTCAGTGGTAGCACTTTTCAGGCCCACAAGTCAGTGGCACAC
261 GGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCACTTTTCAAGCCCACAAGTCAGTGGCACAC
** * *
1833984 TTTTTAAAGCCCCCAAGCTAGTGGCACCTATCTTCAAAGCTCATAAGCTAGTGGCACCCCT
326 TTTCCAAAGCCCACAAGCTAGTGGCACCTATCTTCAAAGCTCACAAGCTAGTGGCACCCCT
* * *
1834045 TTTCAAAGCCCACAAGTCAATGGCACCTCTTTTCAAAGCTCACAAGTCGGTGGTAACTCTTTTCA
1 TTTCAAAGCCCACAAGTTAGTGGCACCTCTTTTCAAAGCTCACAAGTCGGTGGCAACTCTTTTCA
* *
1834110 AAGCCCACACAAATT-GGTGGCACCCTTCCAAAA-CCCACAAGTCAAG-GGCACCCTTTCCAAAG
66 AAGCCCACAC-AATTCAGTGGCACCCTTCCAAAAGCCC-CAAGTC-AGTGGCACCATTTCCAAAG
* * *
1834172 CCCACATAAGTTGGTGGCACCTTTGTCAAAGCCCTCACAAGTTGGCGGCACCCAATCAAAGCCCA
128 CCCACACAAGTTGGTGGCACCTTTGTCAAAGCCCGCAAAAGTTGGCGGCACCCAATCAAAGCCCA
** ** * * *
1834237 CACAAGTTGGTGGCACCCTAATCAAAACCCTTATG-CGAGTGGCACCTTTTTAAAGCCCATAAGT
193 CACAAGTTGGTAACACCCTAATCAAAACCCACAAGTC-AGTGGCACCCTTTTAAAGCCCACAAGT
* **
1834301 AAGTGGCACCCCTTTTCACAGCCCACAAGTCAGTGGCACC-CATTTTCAAAGCCTGCAAGTCAGT
257 AAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCAC-TTTTC-AAGCCCACAAGTCAGT
* * * *
1834365 GGCATC-C-TTCCAAAGCCCACAAGTTAGTGGCACCTATTTTCAAGGCTTACAAG-TATGTGGCA
319 GGCA-CACTTTCCAAAGCCCACAAGCTAGTGGCACCTATCTTCAAAGCTCACAAGCTA-GTGGCA
1834427 CCCCT
382 CCCCT
*
1834432 TTTCAAA-CCCATAAGTTAGTGGCACCTCTTTT
1 TTTCAAAGCCCACAAGTTAGTGGCACCTCTTTT
1834464 AACCGCTAGT
Statistics
Matches: 354, Mismatches: 55, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
385 28 0.08
386 216 0.61
387 91 0.26
388 18 0.05
389 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (386 bp):
TTTCAAAGCCCACAAGTTAGTGGCACCTCTTTTCAAAGCTCACAAGTCGGTGGCAACTCTTTTCA
AAGCCCACACAATTCAGTGGCACCCTTCCAAAAGCCCCAAGTCAGTGGCACCATTTCCAAAGCCC
ACACAAGTTGGTGGCACCTTTGTCAAAGCCCGCAAAAGTTGGCGGCACCCAATCAAAGCCCACAC
AAGTTGGTAACACCCTAATCAAAACCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTAAGT
GGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCACTTTTCAAGCCCACAAGTCAGTGGCACAC
TTTCCAAAGCCCACAAGCTAGTGGCACCTATCTTCAAAGCTCACAAGCTAGTGGCACCCCT
Found at i:1835135 original size:72 final size:71
Alignment explanation
Indices: 1835059--1835255 Score: 195
Period size: 72 Copynumber: 2.7 Consensus size: 71
1835049 CAGTTTTTCG
* * * *
1835059 TAAAGTTTGATTTATTTTTATTTATATAAGTTTAGTTTATTTTCTAGTTTGATTATATGAGTTTA
1 TAAAGTATGATTTATTTTTATTTGTA-AAGTTTAGTTTATTTT-TAGTTTGATTATAAGAGTATA
1835124 AATT-TTT
64 AATTATTT
* * * *
1835131 TAAAGTATGATTT-TCTTTTATTTGTAGAAGCTTAAATCTATTTTTAAG-TTGATAATAAGAGTA
1 TAAAGTATGATTTAT-TTTTATTTGTA-AAG-TTTAGTTTATTTTT-AGTTTGATTATAAGAGTA
1835194 TAAATTATTT
62 TAAATTATTT
* * * *
1835204 TAAGGTATAATTTATTTTTATTTGTAAA-ATTAGTTTGATTTTTATTTTGATT
1 TAAAGTATGATTTATTTTTATTTGTAAAGTTTAGTTT-ATTTTTAGTTTGATT
1835256 GCATTAGTGT
Statistics
Matches: 101, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
70 5 0.05
71 12 0.12
72 46 0.46
73 37 0.37
74 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.55
Consensus pattern (71 bp):
TAAAGTATGATTTATTTTTATTTGTAAAGTTTAGTTTATTTTTAGTTTGATTATAAGAGTATAAA
TTATTT
Found at i:1835223 original size:18 final size:18
Alignment explanation
Indices: 1835186--1835221 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
1835176 AAGTTGATAA
1835186 TAAGAGTATAAATTATTT
1 TAAGAGTATAAATTATTT
*
1835204 TAAG-GTATAATTTATTT
1 TAAGAGTATAAATTATTT
1835221 T
1 T
1835222 TATTTGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (18 bp):
TAAGAGTATAAATTATTT
Found at i:1835559 original size:137 final size:143
Alignment explanation
Indices: 1835357--1835639 Score: 355
Period size: 137 Copynumber: 2.0 Consensus size: 143
1835347 AGTTTAAATT
* * * *
1835357 ATTAAGGTGTAATTTATTTTTATTTGTAGAAATTTAAATTTGTATTTTCATTCGATTATAGGAGT
1 ATTAAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTATATTTTCATTCGATTATACGAGT
* * * *
1835422 TTGAA-TTTTT-AAGGTATTA-TT-TATTT-TTTGTGAAAGTTTAAAATT-TTTTTTGGTACT-A
66 TTAAATTTTTTAAAGATATGACTTATATTTATTTATGAAAGTTTAAAATTATTTTTTGG-ACTGA
*
1835480 TTATAGGAGTTTAA
130 TTATAGGAGTTAAA
* * ** *
1835494 ATTAAGGTATGATTTATTTTTATTTGTAAAAATTTAAATTTATTTTTTGGTTTGATTATACGAGT
1 ATTAAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTATATTTTCATTCGATTATACGAGT
* * *
1835559 TTAAATTTTTTAAAGATATGACTTATTTTTATTTATGAAAGTTTAAATTTATTTTTTGGATTGAT
66 TTAAATTTTTTAAAGATATGACTTATATTTATTTATGAAAGTTTAAAATTATTTTTTGGACTGAT
1835624 TATAGGAGTTAAA
131 TATAGGAGTTAAA
1835637 ATT
1 ATT
1835640 TTTTTTAAAG
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
137 60 0.49
138 5 0.04
139 7 0.06
140 2 0.02
141 4 0.03
142 19 0.16
143 25 0.20
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.53
Consensus pattern (143 bp):
ATTAAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTATATTTTCATTCGATTATACGAGT
TTAAATTTTTTAAAGATATGACTTATATTTATTTATGAAAGTTTAAAATTATTTTTTGGACTGAT
TATAGGAGTTAAA
Found at i:1835608 original size:74 final size:72
Alignment explanation
Indices: 1835329--1836128 Score: 379
Period size: 74 Copynumber: 11.1 Consensus size: 72
1835319 ATAAAAGTAC
* ** * * *
1835329 TTTTT-GTATGATTATAAAAGTTTAAATTATTAAGGTGTAATTTATTTTTATTTGTAGAAA-TTT
1 TTTTTGGTTTGATTATAGGAGTTTAAATTTTTAAGGTATGATTTATTTTTATTTGT-GAAAGTTT
*
1835392 AAATTTGT
65 AAATTTAT
* ** * * *
1835400 ATTTTCATTCGATTATAGGAGTTTGAATTTTTAAGGTATTATTTA--TTT-TTTGTGAAAGTTTA
1 TTTTTGGTTTGATTATAGGAGTTTAAATTTTTAAGGTATGATTTATTTTTATTTGTGAAAGTTTA
*
1835462 AAATT-T
66 AATTTAT
* * *
1835468 TTTTTGGTACT-ATTATAGGAGTTTAAA---TTAAGGTATGATTTATTTTTATTTGTAAAAATTT
1 TTTTTGGT-TTGATTATAGGAGTTTAAATTTTTAAGGTATGATTTATTTTTATTTGTGAAAGTTT
1835529 AAATTTAT
65 AAATTTAT
* * * *
1835537 TTTTTGGTTTGATTATACGAGTTTAAATTTTTTAAAGATATGACTTATTTTTATTTATGAAAGTT
1 TTTTTGGTTTGATTATAGGAGTTTAAA-TTTTT-AAGGTATGATTTATTTTTATTTGTGAAAGTT
1835602 TAAATTTAT
64 TAAATTTAT
* * * *
1835611 TTTTTGGATTGATTATAGGAGTTAAAATTTTTTTTAAAGTATGATTTATTTTTATTTGT-ATAG-
1 TTTTTGGTTTGATTATAGGAGTTTAAA---TTTTTAAGGTATGATTTATTTTTATTTGTGAAAGT
*
1835674 TTAGATTT-T
63 TTAAATTTAT
* * ***** * * ** **
1835683 TATTTTGATTGCCTTAGTGTATTTTTTTTTGAAA-TATT-AGGTA--ATTGGCA-TTTTAAATAA
1 T-TTTTGGTT---TGA-T-TATAGGAGTTT-AAATTTTTAAGGTATGATT--TATTTTTATTTGT
* * *
1835743 AAATACTTTAATTTGTAAAAAT
57 GAA-AGTTTAAATT-T----AT
* * ** * * * *
1835765 GTTTTTGGGTATGATTAGATAACTTTAAAGTTTTAAGGTATAATTTATTTTTATTTGTAAAAGTT
1 -TTTTT-GGTTTGATTATAGGAGTTTAAATTTTTAAGGTATGATTTATTTTTATTTGTGAAAGTT
*
1835830 TAAATTT-G
64 TAAATTTAT
* ** * *
1835838 TATTTGGTTTGATTATAGGAGTTTAAA-TTTTATTGTATTATTTA--TTT-TTTG-AAGAAGTTT
1 TTTTTGGTTTGATTATAGGAGTTTAAATTTTTAAGGTATGATTTATTTTTATTTGTGA-AAGTTT
1835898 AAA-TT-T
65 AAATTTAT
** * *
1835904 TTTTAAGTATGATTATAGGAGTTTAAAATTTTTTTAA-GTATGATTTATTTTTATTTGTAAAAGT
1 TTTTTGGTTTGATTATAGGAGTTT-AAA--TTTTTAAGGTATGATTTATTTTTATTTGTGAAAGT
* **
1835968 TTGAATTTGC
63 TTAAATTTAT
* * * ** * *
1835978 TTTTTAGTTTGATTAT-GCGATTTTAATTTTTTTAAAATACGATTTATTTTTATTTATAGAAA-T
1 TTTTTGGTTTGATTATAG-GAGTTTAA-ATTTTTAAGGTATGATTTATTTTTATTTGT-GAAAGT
*
1836041 TTAAATTTGT
63 TTAAATTTAT
* * * *
1836051 TTTTCGAG-TTGATTATAGGAGTTAAAATTTTTTTAATGTATGATTTATTTTTATTTGT--AAGA
1 TTTTTG-GTTTGATTATAGGAGTTTAAA--TTTTTAAGGTATGATTTATTTTTATTTGTGAAAGT
*
1836113 TT-AATTTAA
63 TTAAATTTAT
1836122 TTTTTGG
1 TTTTTGG
1836129 GATATTTTAT
Statistics
Matches: 554, Mismatches: 115, Indels: 121
0.70 0.15 0.15
Matches are distributed among these distances:
65 14 0.03
66 24 0.04
67 19 0.03
68 45 0.08
69 46 0.08
70 23 0.04
71 36 0.06
72 60 0.11
73 73 0.13
74 117 0.21
75 24 0.04
76 13 0.02
77 5 0.01
78 15 0.03
79 18 0.03
80 11 0.02
81 3 0.01
82 5 0.01
83 3 0.01
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.54
Consensus pattern (72 bp):
TTTTTGGTTTGATTATAGGAGTTTAAATTTTTAAGGTATGATTTATTTTTATTTGTGAAAGTTTA
AATTTAT
Found at i:1835923 original size:66 final size:69
Alignment explanation
Indices: 1835809--1836102 Score: 196
Period size: 73 Copynumber: 4.2 Consensus size: 69
1835799 AAGGTATAAT
* * *
1835809 TTATTT-TTATTTGTAAAAGTTTAAATTTGTATTTGGTTTGATTATAGGAGTTT-AAATTTTATT
1 TTATTTATTTTTTGTAAAAGTTTAAATTTGTATTTAGTATGATTATAGGAGTTTAAAATTTTATT
1835872 -GTA
66 AGTA
*
1835875 TTATTTATTTTTTG-AAGAAGTTTAAATTT-T-TTTAAGTATGATTATAGGAGTTTAAAATTTTT
1 TTATTTATTTTTTGTAA-AAGTTTAAATTTGTATTT-AGTATGATTATAGGAGTTTAAAATTTTA
1835937 TTAAGTA
64 TT-AGTA
* * * * *
1835944 TGATTTATTTTTATTTGTAAAAGTTTGAATTTGCTTTTTAGTTTGATTAT-GCGA-TTT-TAATT
1 TTATTTA--TTT-TTTGTAAAAGTTTAAATTTG-TATTTAGTATGATTATAG-GAGTTTAAAATT
* *
1836006 TTTTTAAAATA
61 TTATT--AGTA
** * * *
1836017 CGATTTATTTTTATTTATAGAAATTTAAATTTGTTTTTCGAGT-TGATTATAGGAG-TTAAAATT
1 TTATTTATTTTT-TGTA-A-AAGTTTAAATTTGTATTT--AGTATGATTATAGGAGTTTAAAATT
*
1836080 TTTTTAATGTA
61 TTATT-A-GTA
*
1836091 TGATTTATTTTT
1 TTATTTATTTTT
1836103 ATTTGTAAGA
Statistics
Matches: 188, Mismatches: 16, Indels: 40
0.77 0.07 0.16
Matches are distributed among these distances:
65 3 0.02
66 26 0.14
67 27 0.14
69 9 0.05
70 2 0.01
71 9 0.05
72 30 0.16
73 40 0.21
74 39 0.21
75 3 0.02
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56
Consensus pattern (69 bp):
TTATTTATTTTTTGTAAAAGTTTAAATTTGTATTTAGTATGATTATAGGAGTTTAAAATTTTATT
AGTA
Found at i:1836094 original size:439 final size:432
Alignment explanation
Indices: 1835061--1836109 Score: 1251
Period size: 439 Copynumber: 2.4 Consensus size: 432
1835051 GTTTTTCGTA
* * * * *
1835061 AAGTTTGATTTATTTTTATTTATATAAGTTTAGTTTATTTTCTAGTTTGATTATATGAGTTTAAA
1 AAGTATGATTTATTTTTATTTGTAAAAGTTTAATTTATTTT-TAGTTTGATTATACGAGTTTAAA
* * ** * * * *
1835126 TTTTTTAAAGTATGATTT-TCTTTTATTTGTAGAAGCTTAAATCTATTTTTAAGTTGATAATAAG
65 TTTTTTAAAATATGATTTAT-TTTTATTTATAGAAATTTAAATTTATTTTTGAGTTGATTATAGG
* * * *
1835190 AG-TATAAATTATTTTAAGGTATAATTTATTTTTATTTGTAAAATTAGTTTGATTTTTATTTTGA
129 AGTTA-AAATTTTTTTAAAGTATGATTTATTTTTATTTGT---ATTAGTTAGATTTTTATTTTGA
** * ** ** *
1835254 TTGCATTAGTGTATTTTTGTTGAAATATTAGATAATTGGTGTTTTAAATGAATTTTTTTTTATTT
190 TTGCATTAGTGTATTTTTGTTGAAATATTAGATAATTGGCATTTTAAATAAAAATACTTTAATTT
* * * *
1835319 ATAAAAGTACTTTTTGTATGATTATAAAAGTTTAAATTATTAAGGTGTAATTTATTTTTATTTGT
255 ATAAAAATACTTTTTGTATGATTAGAAAACTTTAAATTATTAAGGTATAATTTATTTTTATTTGT
*
1835384 AGAAATTTAAATTTGTATTTTCATTCGATTATAGGAGTTTGAATTTTTAAGGTATTATTTATTTT
320 AGAAATTTAAATTTGTATTTTCATTCGATTATAGGAGTTTGAAATTTTAAGGTATTATTTATTTT
* **
1835449 TTGTGAAAGTTTAAAATTTTTTTTGGTACTATTATAGGAGTTTAAATT
385 TTGAGAAAGTTTAAAATTTTTTTAAGTACTATTATAGGAGTTTAAATT
* *
1835497 AAGGTATGATTTATTTTTATTTGTAAAAATTTAAATTTATTTTTTGGTTTGATTATACGAGTTTA
1 AA-GTATGATTTATTTTTATTTGTAAAAGTTT-AATTTA-TTTTTAGTTTGATTATACGAGTTTA
*
1835562 AATTTTTTAAAGATATGACTTATTTTTATTTAT-GAAAGTTTAAATTTATTTTTTG-GATTGATT
63 AATTTTTTAAA-ATATGATTTATTTTTATTTATAGAAA-TTTAAATTTA-TTTTTGAG-TTGATT
1835625 ATAGGAGTTAAAATTTTTTTTAAAGTATGATTTATTTTTATTTGTA-TAGTTAGATTTTTATTTT
124 ATAGGAGTTAAAA-TTTTTTTAAAGTATGATTTATTTTTATTTGTATTAGTTAGATTTTTATTTT
* * *
1835689 GATTGCCTTAGTGTATTTTTTTTTGAAATATTAGGTAATTGGCATTTTAAATAAAAATACTTTAA
188 GATTGCATTAGTGTA-TTTTTGTTGAAATATTAGATAATTGGCATTTTAAATAAAAATACTTTAA
* * *
1835754 TTTGTAAAAAT-GTTTTTGGGTATGATTAGATAACTTTAAAGTT-TTAAGGTATAATTTATTTTT
252 TTTATAAAAATACTTTTT--GTATGATTAGAAAACTTTAAA-TTATTAAGGTATAATTTATTTTT
** * **
1835817 ATTTGTA-AAAGTTTAAATTTGTA-TTTGGTTTGATTATAGGAGTTT-AAATTTTATTGTATTAT
314 ATTTGTAGAAA-TTTAAATTTGTATTTTCATTCGATTATAGGAGTTTGAAATTTTAAGGTATTAT
1835879 TTATTTTTTGA-AGAAGTTT-AAATTTTTTTAAGTA-TGATTATAGGAGTTTAAAATTTTTTT
378 TTATTTTTTGAGA-AAGTTTAAAATTTTTTTAAGTACT-ATTATAGGAGTTT-AAA-----TT
* * *
1835939 AAGTATGATTTATTTTTATTTGTAAAAGTTTGAATTTGCTTTTTAGTTTGATTATGCGATTTTAA
1 AAGTATGATTTATTTTTATTTGTAAAAGTTT-AATTT-ATTTTTAGTTTGATTATACGAGTTTAA
* * *
1836004 TTTTTTTAAAATACGATTTATTTTTATTTATAGAAATTTAAATTTGTTTTTCGAGTTGATTATAG
64 ATTTTTTAAAATATGATTTATTTTTATTTATAGAAATTTAAATTTATTTTT-GAGTTGATTATAG
*
1836069 GAGTTAAAATTTTTTTAATGTATGATTTATTTTTATTTGTA
128 GAGTTAAAATTTTTTTAAAGTATGATTTATTTTTATTTGTA
1836110 AGATTAATTT
Statistics
Matches: 528, Mismatches: 58, Indels: 51
0.83 0.09 0.08
Matches are distributed among these distances:
435 1 0.00
436 29 0.05
437 94 0.18
438 109 0.21
439 121 0.23
440 70 0.13
441 100 0.19
442 4 0.01
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.54
Consensus pattern (432 bp):
AAGTATGATTTATTTTTATTTGTAAAAGTTTAATTTATTTTTAGTTTGATTATACGAGTTTAAAT
TTTTTAAAATATGATTTATTTTTATTTATAGAAATTTAAATTTATTTTTGAGTTGATTATAGGAG
TTAAAATTTTTTTAAAGTATGATTTATTTTTATTTGTATTAGTTAGATTTTTATTTTGATTGCAT
TAGTGTATTTTTGTTGAAATATTAGATAATTGGCATTTTAAATAAAAATACTTTAATTTATAAAA
ATACTTTTTGTATGATTAGAAAACTTTAAATTATTAAGGTATAATTTATTTTTATTTGTAGAAAT
TTAAATTTGTATTTTCATTCGATTATAGGAGTTTGAAATTTTAAGGTATTATTTATTTTTTGAGA
AAGTTTAAAATTTTTTTAAGTACTATTATAGGAGTTTAAATT
Found at i:1836364 original size:72 final size:72
Alignment explanation
Indices: 1836239--1836461 Score: 252
Period size: 72 Copynumber: 3.0 Consensus size: 72
1836229 TGTAAAAGTG
* * * *
1836239 TTTTGAGTATGATTATATTAGTTTAAATATTTTTAAGATATAATTT-TTCTTTATTTGTAAAAGT
1 TTTTG-GTTTGATTATATAAGTTTAAA-ATTTTAAAG-TATTATTTATT-TTTATTTGTAAAAGT
* *
1836303 TTAATTTGTTT
62 TTAAATTATTT
*
1836314 TTTTGGTTTGATTATATAAGTTTAAAATTTTAAAGTATTATTTATTTTTATTTGTAAAAATTTAA
1 TTTTGGTTTGATTATATAAGTTTAAAATTTTAAAGTATTATTTATTTTTATTTGTAAAAGTTT-A
1836379 AATTATTT
65 AATTATTT
* * ** * *
1836387 TTTT-ATTGGATTATACGAGTTTAAATTTTTAAAGTACTATTTATTTTTATTTGTAAAAGTTTAA
1 TTTTGGTTTGATTATATAAGTTTAAAATTTTAAAGTATTATTTATTTTTATTTGTAAAAGTTT-A
*
1836451 AATTATAT
65 AATTATTT
1836459 TTT
1 TTT
1836462 GACTATGATT
Statistics
Matches: 131, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
72 86 0.66
73 21 0.16
74 19 0.15
75 5 0.04
ACGTcount: A:0.33, C:0.01, G:0.09, T:0.56
Consensus pattern (72 bp):
TTTTGGTTTGATTATATAAGTTTAAAATTTTAAAGTATTATTTATTTTTATTTGTAAAAGTTTAA
ATTATTT
Found at i:1836374 original size:33 final size:33
Alignment explanation
Indices: 1836337--1836444 Score: 81
Period size: 33 Copynumber: 3.1 Consensus size: 33
1836327 ATATAAGTTT
1836337 AAAATTTTAAAGTATTATTTATTTTTATTTGTA
1 AAAATTTTAAAGTATTATTTATTTTTATTTGTA
* * * *** *
1836370 AAAATTTAAAATTATTTTTTTATTGGATTATACGAGTTT
1 AAAATTTTAAAGTA-TTATTTATT---TT-TATTTG-TA
* *
1836409 AAATTTTTAAAGTACTATTTATTTTTATTTGTA
1 AAAATTTTAAAGTATTATTTATTTTTATTTGTA
1836442 AAA
1 AAA
1836445 GTTTAAAATT
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
33 16 0.30
34 11 0.21
35 2 0.04
37 2 0.04
38 10 0.19
39 12 0.23
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (33 bp):
AAAATTTTAAAGTATTATTTATTTTTATTTGTA
Found at i:1836574 original size:87 final size:87
Alignment explanation
Indices: 1836404--1836575 Score: 215
Period size: 87 Copynumber: 2.0 Consensus size: 87
1836394 GGATTATACG
**
1836404 AGTTTAAATTTTTAAAGTACTATTTATTTTTATTTGTAAAAGTTTAAAATTATATTTTGACTATG
1 AGTTTAAATTTTTAAAGTACTATTTATTTTTATTCATAAAAGTTTAAAATTATATTTTGACTATG
* **
1836469 ATTATATGAGTTTGAATTTTTT
66 ATTATAGGAGTTAAAATTTTTT
* * * *
1836491 AGTTTAAATTTTTTAAGATA-TGATTTATTTTTATTCATAAAAGTTTTAATTTAT-TTTTCGAGT
1 AGTTTAAATTTTTAAAG-TACT-ATTTATTTTTATTCATAAAAGTTTAAAATTATATTTT-GACT
1836554 -TGATTATAGGAGTTAAAATTTT
63 ATGATTATAGGAGTTAAAATTTT
1836576 ATTAAGATAT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
87 40 0.55
88 33 0.45
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.53
Consensus pattern (87 bp):
AGTTTAAATTTTTAAAGTACTATTTATTTTTATTCATAAAAGTTTAAAATTATATTTTGACTATG
ATTATAGGAGTTAAAATTTTTT
Found at i:1839702 original size:79 final size:78
Alignment explanation
Indices: 1839619--1839980 Score: 396
Period size: 79 Copynumber: 4.6 Consensus size: 78
1839609 ATCATCAGGG
* * *
1839619 ATACTCCAATCTCGTTATTTTCGAAAGGATACTCCAACCCTAGTTTTATTT-TCAGAACATCGAT
1 ATACTCCAATCCCGTTATTTTCGAAGGGATACTCCAACCCT-GTTTTATTTCT-AAAACATCGAT
*
1839683 TTTTCATAATCGGGA
64 TTTTCACAATCGGGA
* *
1839698 ATACTCCAACCCCGTTATTTTCG-AGGAGATACTCCAACCCTGATTTTATTTCTAAAACACCGAT
1 ATACTCCAATCCCGTTATTTTCGAAGG-GATACTCCAACCCTG-TTTTATTTCTAAAACATCGAT
* *
1839762 TTTCCACCATCAGGG-
64 TTTTCACAATC-GGGA
* * * *
1839777 ATACTCCAACCCCCTTA-TTTCTGATA-GGATACTCCAACTCCGGTTTTATTTTTAAAACATCGA
1 ATACTCCAATCCCGTTATTTTC-GA-AGGGATACTCCAAC-CCTGTTTTATTTCTAAAACATCGA
*
1839840 TTTTTCACAATCGGGG
63 TTTTTCACAATCGGGA
* * * *
1839856 ATACTCTAGTCCCGTTATTTTTCGAGGGGATACTCCAACCCTGGTTTATTTCTAAAACA-CTGAT
1 ATACTCCAATCCCGTTA-TTTTCGAAGGGATACTCCAACCCTGTTTTATTTCTAAAACATC-GAT
*
1839920 TTTTCACCATCGGGA
64 TTTTCACAATCGGGA
* *
1839935 ATACTCCAATCCTGTTATTTTCGAGGGGATACTCCAATCCC-GTTTT
1 ATACTCCAATCCCGTTATTTTCGAAGGGATACTCCAA-CCCTGTTTT
1839981 TATCTCCAAA
Statistics
Matches: 241, Mismatches: 28, Indels: 29
0.81 0.09 0.10
Matches are distributed among these distances:
78 35 0.15
79 179 0.74
80 22 0.09
81 5 0.02
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (78 bp):
ATACTCCAATCCCGTTATTTTCGAAGGGATACTCCAACCCTGTTTTATTTCTAAAACATCGATTT
TTCACAATCGGGA
Found at i:1839871 original size:158 final size:158
Alignment explanation
Indices: 1839583--1839971 Score: 498
Period size: 158 Copynumber: 2.5 Consensus size: 158
1839573 TCATTGATGT
* * * * * *
1839583 TTTTATTTCTAAAATACTGATTTTCTATCATCAGGGATACTCCAATCTCGTTATTTTCGAAAGGA
1 TTTTATTTCTAAAACACTGATTTTCCACCATCAGGGATACTCCAACCCCCTTATTTTCGAAAGGA
* *
1839648 TACTCCAACCCTAGTTTTATTTTCAGAACATCGATTTTTCATAATCGGGAATACTCCAACCCCGT
66 TACTCCAACCCTAGTTTTATTTTCAAAACATCGATTTTTCACAATCGGGAATACTCCAACCCCGT
1839713 TA-TTTTCGAGGAGATACTCCAACCCTG
131 TATTTTTCGAGGAGATACTCCAACCCTG
* *
1839740 ATTTTATTTCTAAAACACCGATTTTCCACCATCAGGGATACTCCAACCCCCTTA-TTTCTGATAG
1 -TTTTATTTCTAAAACACTGATTTTCCACCATCAGGGATACTCCAACCCCCTTATTTTC-GAAAG
* * * * **
1839804 GATACTCCAACTCC-GGTTTTATTTTTAAAACATCGATTTTTCACAATCGGGGATACTCTAGTCC
64 GATACTCCAAC-CCTAGTTTTATTTTCAAAACATCGATTTTTCACAATCGGGAATACTCCAACCC
*
1839868 CGTTATTTTTCGAGGGGATACTCCAACCCTG
128 CGTTATTTTTCGAGGAGATACTCCAACCCTG
* * * ** **
1839899 GTTTATTTCTAAAACACTGATTTTTCACCATC-GGGAATACTCCAATCCTGTTATTTTCGAGGGG
1 TTTTATTTCTAAAACACTGATTTTCCACCATCAGGG-ATACTCCAACCCCCTTATTTTCGAAAGG
1839963 ATACTCCAA
65 ATACTCCAA
1839972 TCCCGTTTTT
Statistics
Matches: 201, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
157 7 0.03
158 164 0.82
159 30 0.15
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (158 bp):
TTTTATTTCTAAAACACTGATTTTCCACCATCAGGGATACTCCAACCCCCTTATTTTCGAAAGGA
TACTCCAACCCTAGTTTTATTTTCAAAACATCGATTTTTCACAATCGGGAATACTCCAACCCCGT
TATTTTTCGAGGAGATACTCCAACCCTG
Found at i:1839983 original size:79 final size:77
Alignment explanation
Indices: 1839581--1839983 Score: 388
Period size: 79 Copynumber: 5.1 Consensus size: 77
1839571 TTTCATTGAT
* * * **
1839581 GTTTTTATTTCTAAAATACTGA-TTTTCTATCATCAGGGATACTCCAATCTCGTTATTTTCGAAA
1 GTTTTTATTTCTAAAACACTGATTTTTC-ACCATC-GGGATACTCCAATCCCGTTATTTTCGAGG
1839645 GGATACTCCAACCC
64 GGATACTCCAACCC
* ** *
1839659 -TAGTTTTATTT-TCAGAACA-TCGATTTTTCATAATCGGGAATACTCCAACCCCGTTATTTTCG
1 GT--TTTTATTTCT-AAAACACT-GATTTTTCACCATCGGG-ATACTCCAATCCCGTTATTTTCG
*
1839721 AGGAGATACTCCAACCC
61 AGGGGATACTCCAACCC
* * * * * *
1839738 TGATTTTATTTCTAAAACACCGATTTTCCACCATCAGGGATACTCCAACCCCCTTA-TTTCTGAT
1 -GTTTTTATTTCTAAAACACTGATTTTTCACCATC-GGGATACTCCAATCCCGTTATTTTC-GAG
*
1839802 AGGATACTCCAACTCC
63 GGGATACTCCAAC-CC
* * * * *
1839818 GGTTTTATTTTTAAAACA-TCGATTTTTCACAATCGGGGATACTCTAGTCCCGTTATTTTTCGAG
1 GTTTTTATTTCTAAAACACT-GATTTTTCACCATC-GGGATACTCCAATCCCGTTA-TTTTCGAG
1839882 GGGATACTCCAACCC
63 GGGATACTCCAACCC
* *
1839897 -TGGTTTATTTCTAAAACACTGATTTTTCACCATCGGGAATACTCCAATCCTGTTATTTTCGAGG
1 GT-TTTTATTTCTAAAACACTGATTTTTCACCATCGGG-ATACTCCAATCCCGTTATTTTCGAGG
1839961 GGATACTCCAATCCC
64 GGATACTCCAA-CCC
1839976 GTTTTTAT
1 GTTTTTAT
1839984 CTCCAAAATG
Statistics
Matches: 266, Mismatches: 38, Indels: 41
0.77 0.11 0.12
Matches are distributed among these distances:
77 1 0.00
78 32 0.12
79 202 0.76
80 27 0.10
81 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (77 bp):
GTTTTTATTTCTAAAACACTGATTTTTCACCATCGGGATACTCCAATCCCGTTATTTTCGAGGGG
ATACTCCAACCC
Found at i:1842049 original size:4 final size:4
Alignment explanation
Indices: 1842040--1842073 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
1842030 ATTGAGGTGC
*
1842040 TTAT TTAT TTAT TTAT TCAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1842074 GTTTTGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:1852197 original size:15 final size:14
Alignment explanation
Indices: 1852177--1852213 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1852167 TTTTTTTCAA
1852177 AAAAAAAAACAAAAC
1 AAAAAAAAAC-AAAC
*
1852192 AAAAAAAAACAACC
1 AAAAAAAAACAAAC
1852206 AAAAAAAA
1 AAAAAAAA
1852214 GAAAAAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAACAAAC
Found at i:1852198 original size:18 final size:17
Alignment explanation
Indices: 1852175--1852220 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
1852165 CTTTTTTTTC
1852175 AAAAAAAAAAACAAAACA
1 AAAAAAAAAAACAAAA-A
*
1852193 AAAAAAAACAACCAAAAA
1 AAAAAAAA-AAACAAAAA
1852211 AAAGAAAAAA
1 AAA-AAAAAA
1852221 GAGAAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAACAAAAA
Found at i:1852199 original size:19 final size:18
Alignment explanation
Indices: 1852175--1852220 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
1852165 CTTTTTTTTC
1852175 AAAAAAAAAAACAAAACAA
1 AAAAAAAAAAACAAAA-AA
* *
1852194 AAAAAAACAACCAAAAAA
1 AAAAAAAAAAACAAAAAA
1852212 AAGAAAAAA
1 AA-AAAAAA
1852221 GAGAAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAACAAAAAA
Found at i:1853312 original size:61 final size:60
Alignment explanation
Indices: 1853212--1853643 Score: 514
Period size: 61 Copynumber: 7.1 Consensus size: 60
1853202 ATCCTTTCAA
* * *
1853212 TCCTCAAAGAGCAGGACCTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1 TCCTCAAAGAGTAGGAGC-CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
1853273 TCTTTAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGTAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * * *
1853334 TCCTCAAAGAGTAGGACGTCTTTCCCTTTTAAAGCCCACACAAGTTGGTGACAACTTTCAG
1 TCCTCAAAGAGTAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
1853395 TCCTCAAAGAGCAGGATGCTTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTTCAG
1 TCCTCAAAGAGTAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
1853456 TCCT-AAAAAATCAGGA--CTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGT-AGGAGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
1853514 TCCTCGAACAGTAGGACGCCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGTAGGA-G-CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * * *
1853575 TCCTCAAAGAGCAGGA-CATCTTTCCTTTTCAAAGCCCACATAAGCTGGTGGTACCTTTTAG
1 TCCTCAAAGAGTAGGAGCCT-TTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAG
*
1853636 CCCTCAAA
1 TCCTCAAA
1853644 AGGAAGGACT
Statistics
Matches: 319, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
58 48 0.15
59 7 0.02
60 9 0.03
61 250 0.78
62 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (60 bp):
TCCTCAAAGAGTAGGAGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:1853364 original size:122 final size:120
Alignment explanation
Indices: 1853212--1853643 Score: 566
Period size: 122 Copynumber: 3.6 Consensus size: 120
1853202 ATCCTTTCAA
* *
1853212 TCCTCAAAGAGCAGGACCTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCTT
1 TCCTCAAAGAGCAGGA-CTCTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCT
* *
1853277 TAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
64 CAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
1853334 TCCTCAAAGAGTAGGACGTCTTTCCCTTTTAAAGCCCACACAAGTTGGTGACAACTTTCAGTCCT
1 TCCTCAAAGAGCAGGAC-TCTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCT
* * * *
1853399 CAAAGAGCAGGATGCTTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTTCAG
64 CAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
1853456 TCCTAAAAAATCAGGA--CTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTC
1 TCCTCAAAGAGCAGGACTCTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTTAGTCCTC
* * *
1853519 GAACAGTAGGACGCCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
65 AAAGAGTAGGATG-CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
1853575 TCCTCAAAGAGCAGGACATCTTT-CCTTTTCAAAGCCCACATAAGCTGGTGGTACCTTTTAGCCC
1 TCCTCAAAGAGCAGGAC-TCTTTCCCTTTT-AAAGCCCACACAAGTTGGTGGCACC-TTTAGTCC
1853639 TCAAA
63 TCAAA
1853644 AGGAAGGACT
Statistics
Matches: 270, Mismatches: 32, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
119 97 0.36
120 8 0.03
121 8 0.03
122 157 0.58
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (120 bp):
TCCTCAAAGAGCAGGACTCTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCA
AAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:1856684 original size:28 final size:28
Alignment explanation
Indices: 1856651--1865526 Score: 1814
Period size: 30 Copynumber: 303.8 Consensus size: 28
1856641 CCCTTTTTTA
* *
1856651 AAAGCCCATAAGTTAGTAGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
*
1856679 AAAGCCCACAGGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * **
1856707 AAAGCTC-TAACTTAGTGGCACCCTTTTT
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* ** *
1856735 AAAGCTCACAAGCCAGTGGCACCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* * * *
1856765 AAAGCCTAAAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* *
1856795 AAAGCCCACAAGTTAGTGGCATCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1856823 AAACCCCACAGGTTAGTGGCCCCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1856851 AAAGACCC-TAAGTTAGTGGCACCTTTTTC
1 AAAG-CCCACAAGTTAGTGGCACC-CTTCC
* * * *
1856880 AAAGCCCACAAG-TCGATGGTAACTCTTTTC
1 AAAGCCCACAAGTTAG-TGG-CAC-CCTTCC
* * *
1856910 AAAGCCCATACAA-ATCGATGGCACCCATCC
1 AAAGCCC--ACAAGTTAG-TGGCACCCTTCC
* *
1856940 AAAG--CACAAGTTGGTGGCATCTCCTTCT
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTCC
* ** * *
1856968 AAAGCCCACACAAGCTCA-TACCAACTCTTTTC
1 AAAG-CC-CACAAG-TTAGTGGC-AC-CCTTCC
* ** *
1857000 AAAGCTCACACAAATCGGTGGCCCCCTTCC
1 AAAGC-C-CACAAGTTAGTGGCACCCTTCC
* * * *
1857030 AAAACCCACAAGTCAGGGGCACCTTTTCC
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* * *
1857059 AAAGCCTACATAAGTTAGTGGCACCTTTGGC
1 AAAGCC--CACAAGTTAGTGGCACCCTT-CC
* ***
1857090 AAAGCCCGCACAAGTTGGCAACACCCAGTT--
1 AAAG-CC-CACAAGTTAGTGGCACCC--TTCC
* *
1857120 AAAGCCCATAAAAGTTGGTGGCACCCTAAT-C
1 AAAGCCC--ACAAGTTAGTGGCACCCT--TCC
* **
1857151 AAAGCCCACAAGTTAGTGGCTTCCCCTTTT
1 AAAGCCCACAAGTTAGTGGC--ACCCTTCC
* * * * * *
1857181 AAAGCTCATAAGTCAATGGTAACCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1857209 AAAGCCCACAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1857237 AAAACCCACAAGTCAG-GGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
** *
1857266 AAAGCCCACAAGCCAGTGGCACTCCTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CC-TTCC
* *
1857296 AAAGCCCACAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * * *
1857326 AAAGCCAATAAGTCAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * **
1857355 AAAGCTCACAAGTCAGTGGCACCCCTTTTG
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * *
1857385 AAAGCCCATACGTTAGGGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
*
1857415 AAAGCTCACAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1857443 AAAACCCACAGGTTAGTGGCCCCCCTTCC
1 AAAGCCCACAAGTTAGTGG-CACCCTTCC
** * * **
1857472 AAAGCCTC-TTAGTCAGTGGCACCTTTTTT
1 AAAGCC-CACAAGTTAGTGGCACC-CTTCC
* * *
1857501 AAAGCCCACAAGTCAGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* ** *
1857531 AAAGCCCATACAAATCGGTGGCACCCATCC
1 AAAGCCC--ACAAGTTAGTGGCACCCTTCC
* *
1857561 AAAG--CACAAGTTGGTGGCACCTCCTTCT
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTCC
* * *
1857589 AAAGCGCACACAAGCTAGTAGCAACTCTTTCC
1 AAAGC-C-CACAAGTTAGTGGC-AC-CCTTCC
* **
1857621 AAAGCCCACACAAATCGGTGGC-CCCTTCC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTCC
* * * *
1857650 AAAACCCACAAGTCAGGGGCACCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * *
1857678 AAAGCCTACATAAGTTGGTGGCACCTTTGGC
1 AAAGCC--CACAAGTTAGTGGCACCCTT-CC
* * **
1857709 AAAGCCCGCACAAGTTGGCGGCACTCAGT-C
1 AAAG-CC-CACAAGTTAGTGGCAC-CCTTCC
*
1857739 AAAGCCCACACAAGTTGGTGGCACCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
**
1857770 AAAGCCCACAAGTTAGTGGCATCCTCTTTT
1 AAAGCCCACAAGTTAGTGGCA-CC-CTTCC
* * *
1857800 AAAGCCCACTAGTCAGTGGCACCCTTTTCA
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
* * *
1857830 AAAG-CCATAAGTTAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * * * **
1857858 AAACCCCATAAGTCAATGGCACTCTTTTTT
1 AAAGCCCACAAGTTAGTGGCAC-C-CTTCC
*
1857888 AAAGCCCACAAGTCT-GTGGTACCCTTCC
1 AAAGCCCACAAGT-TAGTGGCACCCTTCC
* **
1857916 AAGGCCCACAAGTTAGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1857944 AAAGCCAACAAGTCTA-TGGCACCACTTTCG
1 AAAGCCCACAAGT-TAGTGGCACC-C-TTCC
* * **
1857974 AAA-CCCACAAGTCAGTGGCACACTTTTT
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1858002 AAAGCCCACAAG-TCGTTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAG-TGGC-AC-CCTTCC
* ** * *
1858032 AAAGCCCACATAAATCGGGGGCACCCTTCT
1 AAAGCCCAC--AAGTTAGTGGCACCCTTCC
* * * *
1858062 AAAACTCACAAGTCAG-GGCACCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * *
1858089 AAAGCCCACACAAGTTGGTGGCATCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-CC
* * *
1858120 AAAGCCCACACAAGTTGGCGGCACCCAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCC-TTCC
* * *
1858150 AAAGCCCACACAAGTTGGTGGCACCATAACC
1 AAAG-CC-CACAAGTTAGTGGCACCCT-TCC
* *
1858181 AAAGTCCACAAGTCAGTGGCACCCCTTTCC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
** ** * * *
1858211 ATGGCCCACAAGCCAATGGCACACATTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1858240 AAAGTCCACAAGTTAGTGGCACTTCTTTTC
1 AAAGCCCACAAGTTAGTGGCAC--CCTTCC
* ** *
1858270 AATGCCTC-CAAGTCCGTGGCATCCCTTTTC
1 AAAGCC-CACAAGTTAGTGGCA-CCC-TTCC
* ** * *
1858300 AAAACTTACAAGTCAGTGGTACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
*
1858328 AAAGCCCACAAGTCAGTGGCACCC-TCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1858355 GAAAGCCCACAAGTTAGTTGCACCCTTTC
1 -AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1858384 AAAGCCCATAAGTCAGTGGCATCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* *
1858414 AAAGCCCACAAGTCAGTGGCACACCTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CC-TTCC
*** * * *
1858444 AAAGTTAAAAAGTCAGTGGCACCCAT--
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * ** * ** **
1858470 -AAG-TCA-ATGGAACCCTTTCAAAGC--CC
1 AAAGCCCACAAGTTA--GTGGC-ACCCTTCC
* * ** *
1858496 ATAAG-TCAGC--G---G-GACACTTTTCA
1 A-AAGCCCA-CAAGTTAGTGGCACCCTTCC
** ** * ** * ** * * *
1858519 AAGCCTAAAACTTAATG-GCAAACTTTTC
1 AAAGCCCACAAGTTA-GTGGCACCCTTCC
* ** * *
1858547 AAAACCCACAAGTCGGGGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* *
1858577 AAAGCCCACAAGTCAGTGGCACCCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* * * *
1858606 AAAGCCAACAAGTCAGTGGCAACTCTTTCT
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* * *
1858636 AAAGCCACACAAATTGGTGGCACTCTTCC
1 AAAGCC-CACAAGTTAGTGGCACCCTTCC
* * * *
1858665 AAAACCCACAAGTCAGTGGCACCGTTTCG
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* * *
1858694 AAAGCCCACACAAGTTGGTGGCACCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-CC
* * *
1858725 AAAGCTCGCACAAGTTGGCGGCA-CCTAGT-T
1 AAAGC-C-CACAAGTTAGTGGCACCCT--TCC
* *
1858755 AAAGCACACACAAGTTGGTGGCACCCAAAT-C
1 AAAGC-C-CACAAGTTAGTGGCACCC--TTCC
* * * *
1858786 AACGGCCACAAGTCAGT-GCTATCCCCTTTC
1 AAAGCCCACAAGTTAGTGGC-A--CCCTTCC
*
1858816 AAAGCCCACAAGTTAGTGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
*
1858845 AAAGCCCACAAGTCT-GTGGCACCCTTTTC
1 AAAGCCCACAAGT-TAGTGGCACCC-TTCC
* * * *
1858874 AATGCCCACAAGTGAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * *
1858903 AAAGCACACAAGTCAGTGGCACCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* ** **
1858932 AAAGCCCACAAGTTGGTAACACCCTTTA
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
*
1858960 AAAGCCAACAAGTTAGTGGCACCACATT-C
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* * *
1858989 AAAGCCC-CAAGTAAGTGGCACGCTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
** ** *
1859017 AAAGCCCACAAGTTAAAGGCATCATTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * *
1859046 AAAGCCCACAAG-TCGATGGCAACTCTTATC
1 AAAGCCCACAAGTTAG-TGGC-ACCCTT-CC
* ** *
1859076 AAAGCCCACACAAATCGGTGGCACCTTTCC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTCC
* * *
1859106 AAAACTCACAAGTCAG-GGCACCCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* * *
1859134 AAAGCCCACACAAGTTGGTGGCACCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-CC
* * * *
1859165 AAATCCCGCACAAGTTGGCGGCACCCAAT-C
1 AAA-GCC-CACAAGTTAGTGGCACCC-TTCC
* *
1859195 AAAGCCCACACAATTGGTGGCACCCTAAT-C
1 AAAGCCCACA-AGTTAGTGGCACCCT--TCC
*
1859225 AAAGCCCACAAGTTAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * *
1859253 AATGCCCGCAAGCTGGTGGCACCCCTTTCC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * *
1859283 AAAGCCCACAAGTCAATGGCACGCTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1859312 AAAGCCCACAGGTTAGCGGCACCTCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTCC
* * *
1859342 AATGCCTACAAGTTAGTGGCATCCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA--CCCTTCC
* *
1859372 AAAGCTCACAAGTCAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1859400 AAA-ACCAGCAAGTCAGTGGCACCCTCCC
1 AAAGCCCA-CAAGTTAGTGGCACCCTTCC
* * *
1859428 AAAGCCCACAAGTTTGTTGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* ** * *
1859456 GAAGTGCATAAGTTAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* *
1859486 AAAGCCCACAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * **
1859516 AAAGCCCATAAGGTAAAGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * **
1859544 TAAGCCAACAAGTCCA-TGGCACCCTTTA
1 AAAGCCCACAAGT-TAGTGGCACCCTTCC
* * *
1859572 AAAGCCCACAAGTCAGCGGCACACTTCTC
1 AAAGCCCACAAGTTAGTGGCACCCTTC-C
* *
1859601 AAAGCCCACAAGTTAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
** *
1859630 AAAGCCCACAAGTCGGTGGGCACCCCATTTC
1 AAAGCCCACAAGTTAGT-GGCA-CCC-TTCC
**
1859661 AAAGCCCACAAGTTAGTGGCACCCTTTTG
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* * * * *
1859690 AAAGCACACAAGTCAATGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* *
1859720 AAAGCCCACACAAATTAGTGAG-ACCCTCCC
1 AAAG-CC-CACAAGTTAGTG-GCACCCTTCC
* * * * * *
1859750 AAAACACACATGTCAGTCGCACCCGTTTCA
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
* * ** *
1859780 AAACCCACACAAGTTGGTGGCACTTTTGTC
1 AAAGCC-CACAAGTTAGTGGCACCCTT-CC
* * * *
1859810 GAAGCCCACACAAGTTGGCGGCATCCTAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT-TCC
*
1859840 AAAGCCCACACAAGTTGGTGGCACCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* *
1859871 AAAGCCATACAAGTTAGTGGCATCCCCTTTC
1 AAAGCC-CACAAGTTAGTGGCA--CCCTTCC
* **
1859902 AAAGCCCACAAGTTAGTGGCAACCTTTTT
1 AAAGCCCACAAGTTAGTGGC-ACCCTTCC
** * *
1859931 AAAGCCCACAAGTCGGTGGCACAGCTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* ** ** * *
1859960 AAATCTTACAAGTCCGTGGCATACCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* ** *
1859989 AAAGCCCACAAGTTAATGGCACATTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1860018 AAAGCCCACAAATTGGTGGCAACACTTTCC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* ** *
1860048 AAAGCTCACACAAATCGGTGGC-CCCTTTCT
1 AAAGC-C-CACAAGTTAGTGGCACCC-TTCC
* * * *
1860078 AAAACCCATAAGTCAGGGGCACCCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* * * *
1860107 ACAGCTCACACAAGTTGGTGGCACCTTTGTC
1 AAAGC-C-CACAAGTTAGTGGCACCCTT-CC
* * *
1860138 AAAGCTGGCACAAGTT-GACGGCACCCAAT-C
1 AAAGC--CCACAAGTTAG-TGGCACCC-TTCC
* *
1860168 AAAGTCCACACAAGTTGGTGGAACCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* * * *
1860199 GAAGCCCATAAGTTAGTGGTACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
*** *
1860228 AAAGCCCACAACCCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* **
1860258 AAAGCCCACAAGTTAGTGGCACACTTTTGA
1 AAAGCCCACAAGTTAGTGGCAC-C-CTTCC
* * *
1860288 AAAG-CCACAAGTCAATGGCACCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* *
1860317 AATGCCTACAAGTT-GTTGGCATCCCTTCAC
1 AAAGCCCACAAGTTAG-TGGCA-CCCTTC-C
* * * *
1860347 AAAGCTCAGAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * **
1860375 AAAGCCCATAAATCAGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * *
1860403 AAAGCGCATAAATTAGTGGCACCCTAT-T
1 AAAGCCCACAAGTTAGTGGCACCCT-TCC
* * *
1860431 AAAGCACATAAGTTAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
* *
1860461 AAAACCCAGAAGTCT-GTGGCACCCTTCC
1 AAAGCCCACAAGT-TAGTGGCACCCTTCC
** * **
1860489 AAAGCATAAAAGTTAGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1860517 AAAGCCAACAAGTTAGTGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * * *
1860546 AAAGCCCACAAGTCAATGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * **
1860575 AAAACCAACAAGTCAGTGGCACCCTTTTT
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* ** * *
1860604 AGAGCCCACAAGTCGGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* *
1860634 AAAGCGCATAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* ** *
1860662 AAAGCCCACAAGTCAACGGCA-CCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
** * * * * *
1860689 AAAGTGCACAAGTCAGCGACACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
** * * *
1860718 AAAGCTTACAAGTTAGTGGCTCACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* *
1860747 AAAGCCTACAAG-TCGATGGCACCCCTTTCC
1 AAAGCCCACAAGTTAG-TGGCA-CCC-TTCC
* * * * *
1860777 AAAGCCCATAAGTCAAT--CACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1860804 AAAGCCCAAAAG-CAGTGGCACTTCCTTTC
1 AAAGCCCACAAGTTAGTGGCAC--CCTTCC
* * * *
1860833 AATGCCTACAAGTCAGTGGCATCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* ** * *
1860863 TAAGATCACAAGTCAATGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * * *
1860891 AAAGCCCATAAGATAGTTGCACCGTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * **
1860919 AAAACCCATAAGTCAGTGGCACCCATTTTT
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
* * *
1860949 AAAGCCCATAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * *
1860979 AAAGCCCATAAGTCAGGGGCACCCTCCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * **
1861007 AAAGCCCACAAGTCAATGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * ** *
1861035 AAAGCCCACAAGTCAGCGGCACAGTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
** *
1861064 AAAGTGCACAAGTTAGTGGCACTCCTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * * * *
1861093 AAAGCCTATAAGTTAATGGCATACTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * * ** *
1861122 AAAACCCACAAGTCAATGGCACATTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* *
1861151 AAAGCCCACAAGTTGGTGGCAACTCTTCTC
1 AAAGCCCACAAGTTAGTGGC-ACCCTTC-C
* * ** * *
1861181 AAAGCCCACACAAATCAGCAGC-CCTTTTCT
1 AAAG-CC-CACAAGTTAGTGGCACC-CTTCC
* * *
1861211 AAAACCTACAAGTTAGGGGCACCCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* ** * *
1861240 AAAGCCCACACAAGTTGGTGGTTCCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-CC
* * * ** **
1861271 AAATCCCGCATAAGTTGGCAGCACTCAAT-C
1 AAA-GCC-CACAAGTTAGTGGCAC-CCTTCC
* *
1861301 AAAGCCCACACAAGTTGGTGGCACCGTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* *
1861332 GAAGCCCACAAGTTAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1861360 AAAGCCCACAAGTTGGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* ** *
1861390 AAAGCCCACAAGTCAGTGG-ACAAGTTAGCG
1 AAAGCCCACAAGTTAGTGGCAC-CCTT--CC
* * *** * *
1861420 ACA-CCC-C---TT-TTCAAAGCC-TAC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
** ** ** * *
1861441 AAGTTAG-TGACACCCTTCCA-AAGCCCCCATGTCT
1 AA---AGCCCACA-AGTT--AGTGGCACCC-T-TCC
** * **
1861475 ATGGCCC-C--CTTCCA-AAG--CCC--CC
1 AAAGCCCACAAGTT--AGTGGCACCCTTCC
* * ** **
1861497 AAGTTAGTGCCAC---TT-TTTTCAAAGC--CC
1 AA---AG-CCCACAAGTTAGTGGC-ACCCTTCC
*** * ** *** * *
1861524 ACAAGTCGGTGTCAACTCTTTTCAAAGCCCATAC
1 A-AAG-C--CCACAAGT-TAGTGGCA-CCCTTCC
* ** **
1861558 AATCGATGGCACC-C-A-TCCA-AAGCACAAGTT--
1 AA---A--GC-CCACAAGT-TAGTGGCAC-CCTTCC
**** * ** * **
1861588 ---GGTGGC-ATTTCCT-TCTAAAGC--CC
1 AAAGCCCACAAGTTAGTGGC--ACCCTTCC
** * *
1861611 -AA----ACAAGCTT-GTACCAACTCTTTTC
1 AAAGCCCACAAG-TTAGTGGC-AC-CCTTCC
** * *
1861636 AAAGCCCACACAAATCGATGG-GCCCTTCC
1 AAAGCCCACA-AGTTAG-TGGCACCCTTCC
* *
1861665 AAAACCCACAAGTCAAG-GGCACCCTTTCC
1 AAAGCCCACAAGT-TAGTGGCACCC-TTCC
* * *
1861694 AAAGCCTACAGAAGTTAGTGGCACCATTGGC
1 AAAGCC--CACAAGTTAGTGGCACCCTT-CC
* *** *
1861725 AAAGCCCGCACAAGTTGGCAACACCCAGT-C
1 AAAG-CC-CACAAGTTAGTGGCACCC-TTCC
** *
1861755 AAAGCCCACACAAGTCGGTGGCTCCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* * * **
1861786 AATGCCCAAAAGCTAGTGGCATCCCCTTTT
1 AAAGCCCACAAGTTAGTGGCA--CCCTTCC
* * * *
1861816 AAAGCTCACAAGTCAATGGCACCCATCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1861844 AAAGCCTACAAGTTAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * **
1861872 AAATCCCATAAGTTAGTGGCACCCATTTT
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* ** * ** * *
1861901 AAAGCCGACAAGCCAATGAAATCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTCC
* *
1861931 AAAGCCCACAAGATAGTGGCACCGCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
** * ** *
1861961 AAAGCTAACAAGTAAGTGGCACATTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1861990 AAAGCCCATAAGTCAGTGGCACCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* * ** * * *
1862020 GATGCTTATAAGTCAATGGCATCCCTTCTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTC-C
* * * *
1862050 GAAGCTCATAAGTCAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1862078 AAAAGCCCACAAGTTAGCGGCACCCTTTC
1 -AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1862107 AAAACCCACAAGTTAGTGGCACCTCTTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* * **
1862136 AAAGCCCACAAGCTAGTGGCACCTTTTTT
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* * * *
1862165 AAGGCTCACAAGTCAGTGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
** * * * *
1862195 AAAGCAAACAAGTCAGTGACACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* *
1862224 AAAGCCCACAAGTTAGTGGTACCTCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* * * *
1862254 AAAGCCAACAAGTCAATGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
*
1862284 AATGCCCACAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1862312 AAAACCCACAAGTTAGTGGCCCCCCTTCC
1 AAAGCCCACAAGTTAGTGG-CACCCTTCC
* * * ** * *
1862341 AAAGCCCCCTAGTCAGCAGCACCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* * *
1862370 AAAGCCCATAAGTTAGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* * * **
1862400 AAAGCCTATACAAATTGGTGGCACCAATCC
1 AAAGCC--CACAAGTTAGTGGCACCCTTCC
* * * * ** *
1862430 AAAG--CATAAGTTTGCGGCATTCAGT-A
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* **
1862456 AAAGCCCACACAAGTTGGTGGGTCCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* **
1862487 AAAGCCCATAAGTTAGTGGCATCCTCTTTT
1 AAAGCCCACAAGTTAGTGGCA-CC-CTTCC
** * * *
1862517 ATGGCCCATAAGTCAGTGGCACCCCTTTCA
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * *
1862547 AAAG-CCATAAGTTAGTGGAACACTATTC
1 AAAGCCCACAAGTTAGTGGCACCCT-TCC
* * * * *
1862575 AAAGCCCATAAGTCAATAGG-ACCTTTTTTC
1 AAAGCCCACAAGTTAGT-GGCACC--CTTCC
1862605 AAAGCCCACAAGTTAGTGGCACCCCTTCC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
**
1862634 AAAGCCCACAAGTTAGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * * * *
1862662 GAGGACAACAAGTAAGTGGCATCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * *
1862691 AAAGCCCAAAAGTTAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * **
1862720 GAAGCGCACACAAATCGGTGGCACCCTTCC
1 AAAGC-C-CACAAGTTAGTGGCACCCTTCC
* * * *
1862750 AAAACTCACAAGTCAG-GGCACTCTTTCC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1862778 AAAGCCCACACAAGTTGGTGGCACCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-CC
* * * * ***
1862809 AAAGCCCGCACAAATTGGCGGTACTAAAT-C
1 AAAG-CC-CACAAGTTAGTGGCAC-CCTTCC
** *
1862839 AAAGCCCACACTTGTAGGTGGCA-CCTTAATC
1 AAAGCCCACAAGT-TA-GTGGCACCCTT--CC
*
1862870 AAAGCCCACAAGTTAGTGGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * **
1862898 AATGCCCACAAGCTAGTGGCACCCCTTTTT
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * *
1862928 AAAGCCCACAGGCTAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * **
1862957 AAAGCCTACAAGTCAGTGGCACCTTCTTTT
1 AAAGCCCACAAGTTAGTGGCACC--CTTCC
* *** * * * *
1862987 AATGTGTACAAGTCAATGGTATCCCTTTGC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * *
1863017 AAAGCTCACAAGTCAGTGGTACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* ** *
1863045 AAAGCCCACAGGCGAGTGGCACTC-TCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * * *
1863072 TAAAGCCCACAAGTCAGTTGCTCCTTTTC
1 -AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * * *
1863101 AAAACCCATAAGTCAGTGGCACTCATTTTC
1 AAAGCCCACAAGTTAGTGGCAC-C-CTTCC
* *
1863131 AAAGCCCACAAGTTAGTGGCAACCATTTTC
1 AAAGCCCACAAGTTAGTGGC-ACC-CTTCC
* * *
1863161 AAAGCCCATAAG-CAGTGGCACCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* ** * *
1863188 GAAGCCCACAAGTCCGTGGCACACTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * ** *
1863216 AAAGCTCACAAGTCAGAGGCACTTTTTTTC
1 AAAGCCCACAAGTTAGTGGCAC--CCTTCC
*
1863246 AAAGCCCATAAGTTAGTGGCACACTCTT-C
1 AAAGCCCACAAGTTAGTGGCAC-C-CTTCC
* * * * *
1863275 AAAGCCGAAAAGTCAGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* * *
1863305 AAAGCCCACACAAATTGGAGGCACCCTTCC
1 AAAG-CC-CACAAGTTAGTGGCACCCTTCC
* * *
1863335 AAAACCCACTAGTTAGTCGG-ACACTTTCC
1 AAAGCCCACAAGTTAGT-GGCAC-CCTTCC
* * *
1863364 AAAGCCCACACAAGTTGGTGGCACCTTTGTC
1 AAAG-CC-CACAAGTTAGTGGCACCCTT-CC
* *
1863395 AAAGCCCACACAAGTTGGCGGCACCCTAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT-TCC
*
1863425 AAAGCACACACAAGTTGGTGGCACCCTAAT-C
1 AAAGC-C-CACAAGTTAGTGGCACCCT--TCC
* * * * *
1863456 AAAGCCCAAAAGTCAATGCCATCCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA--CCCTTCC
* * *
1863486 AAAGCGCACAAGTCAGTGGCATCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * * * * *
1863515 AAAGCCAATAAGTCAGTGACACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * * *
1863544 AAAACCCACAAGTCAGTGGCATCTTTGTC
1 AAAGCCCACAAGTTAGTGGCACCCTT-CC
* **
1863573 AAAGCCCACAAGTTGGTGGCACCCTTTT
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* **
1863601 AAAGCCAACAAGTTAGTGGCACCCCTTTT
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* *
1863630 AAAGCCCACAAGTAAGTGGCACACCTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
*
1863659 AAAGCCCACAAGTTAGTGGCACCCTATTC
1 AAAGCCCACAAGTTAGTGGCACCCT-TCC
* * * *
1863688 AAAGCACACAAG-TCGATGGCAACTCTTTTC
1 AAAGCCCACAAGTTAG-TGGC-AC-CCTTCC
* * * *
1863718 AAAGCTCAAACAAATTGGTGGCACCTTTCC
1 AAAGC-C-CACAAGTTAGTGGCACCCTTCC
* * * * *
1863748 AAAACTCATAAG-TCGAGGCACCCTTTCC
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* **
1863776 AAAGCCCACATAAGTTAGTGGCACCTTTGTTA
1 AAAGCCCAC--AAGTTAGTGGCACC-CT-TCC
*
1863808 AAACCCGCACAAG-T--TGGCAACACCTAAT-C
1 AAAGCC-CACAAGTTAGTGGC-AC-CCT--TCC
*
1863837 AAAGCCCACACAAGTTGGTGGCACCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* * * * * *
1863868 AAAACTCACATGTTAGTGGCTCTCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * **
1863896 AATGCCCATAAACTAGTGGCACCCCTTTCC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * * * *
1863926 AAAACCCA-AAGTCAATGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
*
1863954 AAAGCCCACAAGTTAGTGGCACCTCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-C-CCTTCC
* * *
1863984 AATGCCTACAAGTTAGTGGCATCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* *
1864014 AAAGCCCACAAGTCAATGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1864042 AAAGCCCACAAGTCAGGGGCACCC-TCTC
1 AAAGCCCACAAGTTAGTGGCACCCTTC-C
* *
1864070 AAAGCCCACAAGTTAGTTGCACCCTTTC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* *
1864098 AAAGCCCATAAGTTAGTGGCACCCATTTTC
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
* * *
1864128 AAAGCCCACAAGTCAATGGCACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* *
1864158 AAAGCCCAAAAAG-CAGTGGCACCCTTCC
1 AAAGCCC-ACAAGTTAGTGGCACCCTTCC
* * **
1864186 AAA-CCCATAAGTCCA-TGGCACCCTTTT
1 AAAGCCCACAAGT-TAGTGGCACCCTTCC
* * * ** *
1864213 AAAGCCCATAAGTCAGCGGCACATTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
** **
1864242 AAAGCCCACAAGTTAGTGGCACATTTTTG
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * *
1864271 AAAGCTCACAAGTCAAG-GGCACCCCTTTTC
1 AAAGCCCACAAGT-TAGTGGCA-CCC-TTCC
* * * *
1864301 AAAGCCTACAAGTCAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * ** *
1864330 AAAGCCGACAAGTCAGTGGCAACTATTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
*
1864360 AAAGCCCACGCAAATT-GCTGGCA-CC-TCTC
1 AAAGCCCA--CAAGTTAG-TGGCACCCTTC-C
* * *
1864389 AAAACCCACAAGTCAGTGGCACCCTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* * **
1864418 AAAGCCTACACAAGTTGGTGGCACCTTTGTT
1 AAAGCC--CACAAGTTAGTGGCACCCTT-CC
* * * *
1864449 AAAGCCGTATAAGTTGGCGGCACCCTAAT-C
1 AAAGCC-CACAAGTTAGTGGCACCCT--TCC
* *
1864479 AAAGCCCTCAAGTTAGTGGCACCCCTTAC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* *
1864508 AAAGCCCATAAGTTAGTGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * ** **
1864537 AAGGCCCACAAGTCAGTGGCATACTTGTA
1 AAAGCCCACAAGTTAGTGGCACCCTT-CC
* *
1864566 AAAGCCCACAAGTTAGTGGCACCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-CTTCC
* * * *
1864595 AAAGCTCACAAGTTGGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* * ** * *
1864625 AAAGCTCAAACAAATCGGTGGCTCCTTTCC
1 AAAGC-C-CACAAGTTAGTGGCACCCTTCC
*
1864655 AAAACCCA-AAGTTAAG-GGCACCCTTTCC
1 AAAGCCCACAAGTT-AGTGGCACCC-TTCC
* * *
1864683 AAAGCCCACAAAAGTTTGTGGCACCTTTGTC
1 AAAGCCCAC--AAGTTAGTGGCACCCTT-CC
* * **
1864714 AAAGCCTGCAAAAGTTGGTGGCAACCAGT-C
1 AAAGCC--CACAAGTTAGTGGC-ACCCTTCC
* *
1864744 AAAGCCCACACAAGTTGGTGCCACCCTAAT-C
1 AAAG-CC-CACAAGTTAGTGGCACCCT--TCC
* * *
1864775 GAAGCCAACAAGTTAGTGGCACCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * *
1864804 AAAGCCCACAAGTTAGCGACACCCCTTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCC-TTCC
* * *
1864834 AAAGCCCACAAGTTAGTAGTACCCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
* * *** *
1864864 AAAGCCCATAAGTTTGTGGCAGAATTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
*
1864893 AAAGCCCACAAGTCT-GTGGCACCTCTTTTC
1 AAAGCCCACAAGT-TAGTGGCACC-C-TTCC
* * *
1864923 AAAGCCTACAAGTGAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTTAGTGGCACCC--TTCC
1864953 AAAGCCCACAAGTTAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * *
1864981 AAAGCTCACAGGTTAGTGGCCCCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* ** *
1865009 AAAGCACC-TAAGTTAGTGGCATCTTTTTC
1 AAAGC-CCACAAGTTAGTGGCA-CCCTTCC
* * * * *
1865038 AAAGCACATAAGTCAGTGGCAACTCTTTTC
1 AAAGCCCACAAGTTAGTGGC-AC-CCTTCC
* * * ** *
1865068 GAAGCTTACACAAATCGGTGGC-CCCTTTTC
1 AAAGC--CCACAAGTTAGTGGCACCC-TTCC
* * * **
1865098 AAAACACACAAGTGA-TGGCACTTTTTCC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * * *
1865126 AACGACTACACAAGTAAGTGGCACCTTTGGC
1 AAAG-C-CCACAAGTTAGTGGCACCCTT-CC
*
1865157 AAACCCCGCACAAGTT-G-GG-ACCCAGTT--
1 AAA-GCC-CACAAGTTAGTGGCACCC--TTCC
* * *
1865184 AAAGTTCACACAAGTTGGTGGCACGCTAAT-C
1 AAAG--CCCACAAGTTAGTGGCACCCT--TCC
**
1865215 AAAGCCCACAAGTTAGTGGCATCCCCTTTT
1 AAAGCCCACAAGTTAGTGGCA--CCCTTCC
*
1865245 AAAGCCCACAAGTTAATGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* **
1865273 AAAGCCCACAAGTTAGTGGCACCATTTG
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
* * * *
1865301 AAAGCCTACAACTCAGTGGCATCCCTTTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTCC
* * * *
1865330 AAAGCCCATAAGCTAGTGGCCCCGCTTTTC
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* *
1865360 AAAGCCCACAAGTTAGTGGCACACTTTTC
1 AAAGCCCACAAGTTAGTGGCAC-CCTTCC
* * * * **
1865389 AATGGCCACAAGTAAATGGCACCTCTTTTT
1 AAAGCCCACAAGTTAGTGGCACC-C-TTCC
* * *
1865419 AATGCCTACAAGTCAGTGGCATCCCTTCTC
1 AAAGCCCACAAGTTAGTGGCA-CCCTTC-C
* *
1865449 AAAGCTCACAAGTCAGTGGCACCCTTCC
1 AAAGCCCACAAGTTAGTGGCACCCTTCC
1865477 AAAGCCCACAAGTTAGTGGCACCCATT-C
1 AAAGCCCACAAGTTAGTGGCACCC-TTCC
* *
1865505 AAAGCCGATAAGTTAGTGGCAC
1 AAAGCCCACAAGTTAGTGGCAC
1865527 TCGTTTGAAG
Statistics
Matches: 6670, Mismatches: 1584, Indels: 1188
0.71 0.17 0.13
Matches are distributed among these distances:
21 3 0.00
22 12 0.00
23 12 0.00
24 5 0.00
25 13 0.00
26 53 0.01
27 197 0.03
28 1454 0.22
29 1936 0.29
30 2071 0.31
31 659 0.10
32 223 0.03
33 23 0.00
34 5 0.00
35 1 0.00
36 1 0.00
37 1 0.00
38 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (28 bp):
AAAGCCCACAAGTTAGTGGCACCCTTCC
Found at i:1856729 original size:27 final size:28
Alignment explanation
Indices: 1856663--1856889 Score: 126
Period size: 28 Copynumber: 7.9 Consensus size: 28
1856653 AGCCCATAAG
* *
1856663 TTAGTAGCACCCTTCCAAAGCCCACAGG
1 TTAGTGGCACCCTTCCAAAGCCCACAGC
*
1856691 TTAGTGGCACCCTTCCAAAGCTCTA-A-C
1 TTAGTGGCACCCTTCCAAAGC-CCACAGC
** *
1856718 TTAGTGGCACCCTTTTTAAAGCTCACAAGC
1 TTAGTGGCACCC-TTCCAAAGCCCAC-AGC
* * * *
1856748 -CAGTGGCACCTCTTTTCAAAGCCTAAAAG-
1 TTAGTGGCACC-C-TTCCAAAGCC-CACAGC
* *
1856777 TCAGTGGCACCCCTTTTCAAAGCCCACAAG-
1 TTAGTGGCA-CCC-TTCCAAAGCCCAC-AGC
* * * *
1856807 TTAGTGGCATCTTTCCAAACCCCACAGG
1 TTAGTGGCACCCTTCCAAAGCCCACAGC
*
1856835 TTAGTGGCCCCCTTCCAAAGACCCTA-AG-
1 TTAGTGGCACCCTTCCAAAG-CCC-ACAGC
* *
1856863 TTAGTGGCACCTTTTTCAAAGCCCACA
1 TTAGTGGCACC-CTTCCAAAGCCCACA
1856890 AGTCGATGGT
Statistics
Matches: 158, Mismatches: 26, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
27 16 0.10
28 69 0.44
29 26 0.16
30 44 0.28
31 3 0.02
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (28 bp):
TTAGTGGCACCCTTCCAAAGCCCACAGC
Found at i:1856976 original size:145 final size:145
Alignment explanation
Indices: 1856628--1856977 Score: 371
Period size: 144 Copynumber: 2.4 Consensus size: 145
1856618 AAACAACTAC
* ** * *
1856628 AAGTCAGTGGCACCCCTTTTTTAAAAGCCCATAAGTTAGTAGCA-C-CCTTCCAAAGCCCACAGG
1 AAGTCAGTGGCACCCC--TATCCAAAG-CCACAAGTTAGTGGCATCTCCTTCCAAAGCCCACAGG
* *
1856691 TTAGTGGCACCCTTCCAAAGCTCTAACTTAGTGGCACCCTTTTTAAAGCTCACAAGCCAGTGGCA
63 TTAGTGGCACCCTTCCAAAGCCCTAACTTAGTGGCACCCTTTTTAAAGCCCACAAGCCAGTGGCA
*
1856756 CCTCTTTTCAAAGCCTAA
128 ACTCTTTTCAAAGCCTAA
* * *
1856774 AAGTCAGTGGCACCCCTTTTCAAAGCCCACAAGTTAGTGGCATCT--TTCCAAACCCCACAGGTT
1 AAGTCAGTGGCACCCCTATCCAAAG-CCACAAGTTAGTGGCATCTCCTTCCAAAGCCCACAGGTT
* * * *
1856837 AGTGGCCCCCTTCCAAAGACCCTAAGTTAGTGGCA-CCTTTTTCAAAGCCCACAAGTC-GATGGT
65 AGTGGCACCCTTCCAAAG-CCCTAACTTAGTGGCACCCTTTTT-AAAGCCCACAAGCCAG-TGGC
1856900 AACTCTTTTCAAAGCCCATACA
127 AACTCTTTTCAAAG-CC-TA-A
* *
1856922 AA-TC-GATGGCA-CCC-ATCCAAAG-CACAAGTTGGTGGCATCTCCTTCTAAAGCCCACA
1 AAGTCAG-TGGCACCCCTATCCAAAGCCACAAGTTAGTGGCATCTCCTTCCAAAGCCCACA
1856978 CAAGCTCATA
Statistics
Matches: 177, Mismatches: 16, Indels: 23
0.82 0.07 0.11
Matches are distributed among these distances:
143 17 0.10
144 65 0.37
145 61 0.34
146 22 0.12
147 9 0.05
148 3 0.02
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (145 bp):
AAGTCAGTGGCACCCCTATCCAAAGCCACAAGTTAGTGGCATCTCCTTCCAAAGCCCACAGGTTA
GTGGCACCCTTCCAAAGCCCTAACTTAGTGGCACCCTTTTTAAAGCCCACAAGCCAGTGGCAACT
CTTTTCAAAGCCTAA
Found at i:1857105 original size:31 final size:31
Alignment explanation
Indices: 1857036--1857105 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
1857026 TTCCAAAACC
* * *
1857036 CACAAGTCAGGGGCACCTTTTCCAAAGCCTA
1 CACAAGTTAGGGGCACCTTTGCCAAAGCCCA
* * * *
1857067 CATAAGTTAGTGGCACCTTTGGCAAAGCCCG
1 CACAAGTTAGGGGCACCTTTGCCAAAGCCCA
1857098 CACAAGTT
1 CACAAGTT
1857106 GGCAACACCC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (31 bp):
CACAAGTTAGGGGCACCTTTGCCAAAGCCCA
Found at i:1857552 original size:32 final size:29
Alignment explanation
Indices: 1857484--1857553 Score: 77
Period size: 32 Copynumber: 2.3 Consensus size: 29
1857474 AGCCTCTTAG
* * *
1857484 TCAGTGGCACCTTTTTTAAAGCCCACAAG
1 TCAGTGGCAACTTTTTCAAAGCCCACAAA
1857513 TCAGTGGCAACTCTTTTCAAAGCCCATACAAA
1 TCAGTGGCAACT-TTTTCAAAGCCC--ACAAA
*
1857545 TCGGTGGCA
1 TCAGTGGCA
1857554 CCCATCCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.32
30 11 0.32
32 12 0.35
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (29 bp):
TCAGTGGCAACTTTTTCAAAGCCCACAAA
Found at i:1857775 original size:31 final size:31
Alignment explanation
Indices: 1857677--1857779 Score: 118
Period size: 31 Copynumber: 3.4 Consensus size: 31
1857667 GGCACCTTTC
* * * * *
1857677 CAAAGCCTACATAAGTTGGTGGCACCTTTGG
1 CAAAGCCCACACAAGTTGGTGGCACCCTAGT
* * *
1857708 CAAAGCCCGCACAAGTTGGCGGCACTC-AGT
1 CAAAGCCCACACAAGTTGGTGGCACCCTAGT
*
1857738 CAAAGCCCACACAAGTTGGTGGCACCCTAAT
1 CAAAGCCCACACAAGTTGGTGGCACCCTAGT
1857769 CAAAGCCCACA
1 CAAAGCCCACA
1857780 AGTTAGTGGC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
30 25 0.42
31 34 0.58
ACGTcount: A:0.30, C:0.31, G:0.22, T:0.17
Consensus pattern (31 bp):
CAAAGCCCACACAAGTTGGTGGCACCCTAGT
Found at i:1857892 original size:58 final size:59
Alignment explanation
Indices: 1857757--1858014 Score: 155
Period size: 58 Copynumber: 4.4 Consensus size: 59
1857747 CACAAGTTGG
** * * *
1857757 TGGCACCCTAATC-AAAGCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCCACTAGTCAG
1 TGGCACCCTTTTCAAAAG-CCACAAGTTAGTGGCATCCTCTTTCAAACCCCACTAGTCAA
*
1857816 TGGCACCCTTTTCAAAAGCCATAAGTTAGTGGCA-CACT-TTTCAAACCCCA-TAAGTCAA
1 TGGCACCCTTTTCAAAAGCCACAAGTTAGTGGCATC-CTCTTTCAAACCCCACT-AGTCAA
* ** * * ** * * *
1857874 TGGCACTCTTTTTTAAAGCCCACAAGTCT-GTGGTA-CC-CTTCCAAGGCCCACAAGTTAG
1 TGGCACCCTTTTCAAAAG-CCACAAGT-TAGTGGCATCCTCTTTCAAACCCCACTAGTCAA
* * *
1857932 TGGCACCCTTTT--AAAGCCAACAAGTCTA-TGGCA-CCACTTTCGAAA-CCCACAAGTCAG
1 TGGCACCCTTTTCAAAAGCC-ACAAGT-TAGTGGCATCCTCTTTC-AAACCCCACTAGTCAA
* *
1857989 TGGCACACTTTT-TAAAGCCCACAAGT
1 TGGCACCCTTTTCAAAAG-CCACAAGT
1858015 CGTTGGCAAC
Statistics
Matches: 163, Mismatches: 23, Indels: 27
0.77 0.11 0.13
Matches are distributed among these distances:
55 2 0.01
56 18 0.11
57 27 0.17
58 68 0.42
59 43 0.26
60 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (59 bp):
TGGCACCCTTTTCAAAAGCCACAAGTTAGTGGCATCCTCTTTCAAACCCCACTAGTCAA
Found at i:1857991 original size:144 final size:146
Alignment explanation
Indices: 1857773--1859729 Score: 457
Period size: 144 Copynumber: 13.5 Consensus size: 146
1857763 CCTAATCAAA
* * * *
1857773 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCCACTAGTCAGTGGCACCCTTTTCAAAAGCCAT
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTCAGTGGCACCCTTTTCAAAACCCAC
* * *
1857838 AAGTTAGTGGCACACTTTTCAAACCCCATAAGTCAATGGC-ACTCTTTTTTAAAGCCCACAAGTC
66 AAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTC-TTTTCAAAGCCCACAAGTC
1857902 TGTGGTACCCTTCCAAG
130 TGTGGTACCCTTCCAAG
*
1857919 GCCCACAAGTTAGTGGCA-CC-CTTTTAAAGCCAACAAGTCTA-TGGCACCAC-TTTCGAAACCC
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTC-AGTGGCACC-CTTTTCAAAACCC
* * **
1857980 ACAAGTCAGTGGCACACTTTTTAAAGCCCACAAGTCGTTGGCAACTCTTTTCAAAGCCCACATAA
64 ACAAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCAC--AA
* * * * * *
1858045 ATCGGGGGCACCCTTCTAAA
127 GTCTGTGGTACCCTTCCAAG
* * * ** ** * *
1858065 ACTCACAAGTCAG-GGCA-CCT-TTCCAAAGCCCACACAAGTTGGTGGCA-TCTTTGTCAAAGCC
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAG-CCA-ACAAGTCAGTGGCACCCTTT-TCAAA-AC
** * *** *** *** *
1858126 CACACAAGTTGGCGGCAC-CCAATCAAAGCCCACACAAGTTGGTGGC-AC-CATAACCAAAGTCC
62 C-CACAAGTCAGTGGCACACTTTTCAAA-CCC-CACAAGTCAATGGCAACTC-TTTTCAAAGCCC
* * *
1858188 ACAAGTCAGTGGCACCCCTTTCCATG
123 ACAAGTCTGTGGTA-CCC-TTCCAAG
** * * * * * **
1858214 GCCCACAAGCCAATGGCA-CAC-ATTTCAAAGTCC-ACAAGTTAGTGGCACTTCTTTTCAATGCC
1 GCCCACAAGTTAGTGGCATC-CTCTTTTAAAG-CCAACAAGTCAGTGGCAC-CCTTTTCAAAACC
* * * ** * * * *
1858276 TC-CAAGTCCGTGGCATCCCTTTTCAAAACTTACAAGTCAGTGG-TAC-CCTTCCAAAGCCCACA
63 -CACAAGTCAGTGGCA-CACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACA
* * *
1858338 AGTCAGTGGCACCC-TCCGAAA
126 AGTCTGTGGTACCCTTCC-AAG
* * * * *
1858359 GCCCACAAGTTAGTTGCA-CC-CTTTCAAAGCCCATAAGTCAGTGGCATCCCTTTTCAAAGCCCA
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTCAGTGGCA-CCCTTTTCAAAACCCA
**** * * *
1858422 CAAGTCAGTGGCACACCTTTTCAAAGTTAAAAAGTCAGTGGC-AC-C----CATAAG---TCAA-
65 CAAGTCAGTGGCACA-CTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCA-AAGCCCACAAG
* * *
1858477 ----TGGAACCCTTTCAAA
128 TCTGTGGTACCCTTCCAAG
* * * * * * * * **
1858492 GCCCATAAGTCAGCGGGA-CACT-TTTCAAAGCCTAA-AACTTAATGGCAAACTTTTCAAAACCC
1 GCCCACAAGTTAGTGGCATC-CTCTTTTAAAGCC-AACAAGTCAGTGGCACCCTTTTCAAAACCC
* * * * * * *
1858554 ACAAGTCGGGGGCACCCCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTCAAAGCCAACAAG
64 ACAAGTCAGTGGCA-CACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACAAG
* * * * *
1858618 TCAGTGGCAACTCTTTCTAAA
128 TCTGTGG-TAC-CCTTCCAAG
* * ** * * * *
1858639 GCCACACAAATTGGTGGCA--CTCTTCCAAAACCCACAAGTCAGTGGCA-CCGTTTCGAAAGCCC
1 GCC-CACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTCAGTGGCACCCTTTTC-AAA-ACC
** * **** *
1858701 ACACAAGTTGGTGGCAC-CTTTGTCAAAGCTCGCACAAGTTGGCGGC-AC-CTAGTT-AAAGCAC
63 -CACAAGTCAGTGGCACACTTT-TCAAA-C-CCCACAAGTCAATGGCAACTCT-TTTCAAAGC-C
* *
1858762 ACACAAGT-TGGTGGCACCCAAAT-CAACG
122 -CACAAGTCT-GTGGTACCC--TTCCAA-G
* * * * * * *
1858790 G-CCACAAGTCAGT-GCTATCCCCTTTCAAAGCCCACAAGTTAGTGGCACCCCTTTCAAAGCCCA
1 GCCCACAAGTTAGTGGC-ATCCTCTTTTAAAGCCAACAAGTCAGTGGCACCCTTTTCAAAACCCA
* * ** * * * *
1858853 CAAGTCTGTGGCACCCTTTTCAATGCCCACAAGTGAGTGGC-ACACTTTTCAAAGCACACAAGTC
65 CAAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACAAGTC
* * * * *
1858917 AGTGGCACCTTTTTCAAA
130 TGTGGTACC-CTTCCAAG
* ** * * * *
1858935 GCCCACAAGTTGGTAACA-CC-CTTTAAAAGCCAACAAGTTAGTGGCACCAC-ATTCAAAGCCC-
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTCAGTGGCACC-CTTTTCAAAACCCA
* * * * *
1858996 CAAGTAAGTGGCACGCTTTTCAAAGCCCACAAGTTAAAGGC-A-TCATTTTCAAAGCCCACAAGT
65 CAAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTC-TTTTCAAAGCCCACAAGT
* * *
1859059 C-GATGGCAACTCTTATCAAAG
129 CTG-TGG-TAC-CCT-TCCAAG
* * ** ** * * *
1859080 CCCACACAAATCGGTGGCA-CCT-TTCCAAAACTC-ACAAGTCAG-GGCACCCTTTCCAAAGCCC
1 GCC-CACAAGTTAGTGGCATCCTCTTTTAAAGC-CAACAAGTCAGTGGCACCCTTTTCAAA-ACC
** **** ***
1859141 ACACAAGTTGGTGGCAC-CTTTGTCAAATCCCGCACAAGTTGGCGGC-AC-CCAATCAAAGCCCA
63 -CACAAGTCAGTGGCACACTTT-TCAAA-CCC-CACAAGTCAATGGCAACTCTTTTCAAAGCCCA
* * *
1859203 CACAAT-TGGTGGCACCCTAAT-CAAA
124 CA-AGTCT-GTGGTACCCT--TCCAAG
* * ** * * *
1859228 GCCCACAAGTTAGTGGCA-CC-CTTTCAATGCCCGCAAG-CTGGTGGCACCCCTTTCCAAAGCCC
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTC-AGTGGCA-CCCTTTTCAAAACCC
* * * * * ** * * * *
1859290 ACAAGTCAATGGCACGCTTTTCAAAGCCCACAGGTTAGCGGCACCTCCTTTCAATGCCTACAAGT
64 ACAAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACAAGT
* * *
1859355 -TAGTGGCATCCCCTTTCAAA
129 CT-GTGG--TACCCTTCCAAG
* * ** * * ** *
1859375 GCTCACAAGTCAGTGGCA-CC-CTTCCAAAACCAGCAAGTCAGTGGCACCC-TCCCAAAGCCCAC
1 GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTCAGTGGCACCCTTTTCAAAACCCAC
** * * * *** * * * * * *
1859437 AAGTTTGTTGCAC-CCTTTCGAAGTGCATAAGTTAGTGGCACCCCTTTTCAAAGCCCACAAGTCA
66 AAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACAAGTCT
* * *
1859501 GTGGCACCCCTTTTCAAA
131 GTGGTA-CCC-TTCCAAG
* * ** *
1859519 GCCCATAAGGTAAAGGCA-CC-CTTCCT-AAGCCAACAAGTCCA-TGGCACCC-TTT-AAAAGCC
1 GCCCACAAGTTAGTGGCATCCTCTT-TTAAAGCCAACAAGT-CAGTGGCACCCTTTTCAAAA-CC
* * * * * *
1859578 CACAAGTCAGCGGCACACTTCTCAAAGCCCACAAGTTAGTGGC-ACACTTTTCAAAGCCCACAAG
63 CACAAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACAAG
* * * *
1859642 TCGGTGGGCACCCCATTTCAAA
128 TCTGT-GGTA-CCC-TTCCAAG
* * *
1859664 GCCCACAAGTTAGTGGCA-CC-CTTTTGAAAG-CACACAAGTCAATGGCAACTCTTTTCAAAGCC
1 GCCCACAAGTTAGTGGCATCCTCTTTT-AAAGCCA-ACAAGTCAGTGGC-ACCCTTTTCAAAACC
1859726 CACA
63 CACA
1859730 CAAATTAGTG
Statistics
Matches: 1384, Mismatches: 298, Indels: 256
0.71 0.15 0.13
Matches are distributed among these distances:
133 72 0.05
134 24 0.02
135 1 0.00
137 3 0.00
138 5 0.00
140 5 0.00
141 3 0.00
142 2 0.00
143 66 0.05
144 316 0.23
145 157 0.11
146 150 0.11
147 201 0.15
148 107 0.08
149 138 0.10
150 73 0.05
151 55 0.04
152 6 0.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (146 bp):
GCCCACAAGTTAGTGGCATCCTCTTTTAAAGCCAACAAGTCAGTGGCACCCTTTTCAAAACCCAC
AAGTCAGTGGCACACTTTTCAAACCCCACAAGTCAATGGCAACTCTTTTCAAAGCCCACAAGTCT
GTGGTACCCTTCCAAG
Found at i:1858125 original size:411 final size:412
Alignment explanation
Indices: 1857609--1858447 Score: 1081
Period size: 411 Copynumber: 2.0 Consensus size: 412
1857599 CAAGCTAGTA
* *
1857609 GCAACTCTTTCCAAAGCCCACACAAATCGGTGGCCCCTTCCAAAACCCACAAGTCAGGGGCACCT
1 GCAACTCTTTTCAAAGCCCACACAAATCGGGGGCCCCTTCCAAAACCCACAAGTCAGGGGCACCT
* * * * *
1857674 TTCCAAAGCCTACATAAGTTGGTGGCACCTTTGGCAAAGCCCGCACAAGTTGGCGGCACTCAGTC
66 TTCCAAAGCCCACACAAGTTGGTGGCACCTTTGGCAAAGCCCACACAAGTTGGCGGCACCCAATC
* * * * *
1857739 AAAGCCCACACAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTAGTGGCATCCTCTTT-TAAA
131 AAAGCCCACACAAGTTGGTGGCACCATAACCAAAGCCCACAAGTCAGTGGCA-CCCCTTTCCAAA
* * * * * *
1857803 GCCCACTAGTCAGTGGCACCCTTTTCAAAAG-CCATAAGTTAGTGGCAC-ACTTTTCAA-ACC-C
195 GCCCACAAGCCAATGGCACACATTTC-AAAGTCCACAAGTTAGTGGCACTACTTTTCAATACCTC
* * * * *
1857864 CATAAGTCAATGGCA-CTCTTTTTTAAAGCCCACAAGTCTGTGGTACCCTTCCAAGGCCCACAAG
259 C--AAGTCAATGGCATC-CCTTTTCAAAACCCACAAGTCAGTGGTACCCTTCCAAAGCCCACAAG
* ***
1857928 TTAGTGGCACCCTTTTAAAGCCAACAAGTCTA-TGGCACCACTTTCGAAA-CCCACAAGTCAGTG
321 TCAGTGGCACCCTCCGAAAGCCAACAAGT-TAGTGGCACC-CTTTC-AAAGCCCACAAGTCAGTG
*
1857991 GCA-CACTTTTTAAAGCCCACAAGTC-GTTG
383 GCATCACTTTTCAAAGCCCACAAGTCAG-TG
* * *
1858020 GCAACTCTTTTCAAAGCCCACATAAATCGGGGGCACCCTTCTAAAACTCACAAGTCA-GGGCACC
1 GCAACTCTTTTCAAAGCCCACACAAATCGGGGGC-CCCTTCCAAAACCCACAAGTCAGGGGCACC
* *
1858084 TTTCCAAAGCCCACACAAGTTGGTGGCATCTTTGTCAAAGCCCACACAAGTTGGCGGCACCCAAT
65 TTTCCAAAGCCCACACAAGTTGGTGGCACCTTTGGCAAAGCCCACACAAGTTGGCGGCACCCAAT
* **
1858149 CAAAGCCCACACAAGTTGGTGGCACCATAACCAAAGTCCACAAGTCAGTGGCACCCCTTTCCATG
130 CAAAGCCCACACAAGTTGGTGGCACCATAACCAAAGCCCACAAGTCAGTGGCACCCCTTTCCAAA
* *
1858214 GCCCACAAGCCAATGGCACACATTTCAAAGTCCACAAGTTAGTGGCACTTCTTTTCAATGCCTCC
195 GCCCACAAGCCAATGGCACACATTTCAAAGTCCACAAGTTAGTGGCACTACTTTTCAATACCTCC
** **
1858279 AAGTCCGTGGCATCCCTTTTCAAAACTTACAAGTCAGTGGTACCCTTCCAAAGCCCACAAGTCAG
260 AAGTCAATGGCATCCCTTTTCAAAACCCACAAGTCAGTGGTACCCTTCCAAAGCCCACAAGTCAG
* * * *
1858344 TGGCACCCTCCGAAAGCCCACAAGTTAGTTGCACCCTTTCAAAGCCCATAAGTCAGTGGCATCCC
325 TGGCACCCTCCGAAAGCCAACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCAC
1858409 TTTTCAAAGCCCACAAGTCAGTG
390 TTTTCAAAGCCCACAAGTCAGTG
1858432 GCACAC-CTTTTCAAAG
1 GCA-ACTCTTTTCAAAG
1858448 TTAAAAAGTC
Statistics
Matches: 370, Mismatches: 46, Indels: 23
0.84 0.10 0.05
Matches are distributed among these distances:
410 13 0.04
411 206 0.56
412 143 0.39
413 6 0.02
414 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (412 bp):
GCAACTCTTTTCAAAGCCCACACAAATCGGGGGCCCCTTCCAAAACCCACAAGTCAGGGGCACCT
TTCCAAAGCCCACACAAGTTGGTGGCACCTTTGGCAAAGCCCACACAAGTTGGCGGCACCCAATC
AAAGCCCACACAAGTTGGTGGCACCATAACCAAAGCCCACAAGTCAGTGGCACCCCTTTCCAAAG
CCCACAAGCCAATGGCACACATTTCAAAGTCCACAAGTTAGTGGCACTACTTTTCAATACCTCCA
AGTCAATGGCATCCCTTTTCAAAACCCACAAGTCAGTGGTACCCTTCCAAAGCCCACAAGTCAGT
GGCACCCTCCGAAAGCCAACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCACT
TTTCAAAGCCCACAAGTCAGTG
Found at i:1858143 original size:88 final size:89
Alignment explanation
Indices: 1857974--1858145 Score: 208
Period size: 88 Copynumber: 1.9 Consensus size: 89
1857964 ACCACTTTCG
** *
1857974 AAACCCACAAGTCAGTGGCACACTTTTTAAAGCCCACAAGTCGTTGGCAACTCTTTTCAAAGCCC
1 AAACCCACAAGTCAGTGGCACACTTTCCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCC
* *
1858039 ACATAAATCGGGGGCACCCTTCTA
66 ACACAAATCGGCGGCACCCTTCTA
* *
1858063 AAACTCACAAGTCAG-GGCAC-CTTTCCAAAGCCCACACAAGTTGGTGGC-A-TCTTTGTCAAAG
1 AAACCCACAAGTCAGTGGCACACTTTCCAAAG-CC-CACAAGTCGGTGGCAACTCTTT-TCAAAG
* *
1858124 CCCACACAAGTTGGCGGCACCC
63 CCCACACAAATCGGCGGCACCC
1858146 AATCAAAGCC
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
87 13 0.18
88 32 0.45
89 26 0.37
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (89 bp):
AAACCCACAAGTCAGTGGCACACTTTCCAAAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCCC
ACACAAATCGGCGGCACCCTTCTA
Found at i:1858190 original size:31 final size:30
Alignment explanation
Indices: 1858078--1858190 Score: 118
Period size: 31 Copynumber: 3.7 Consensus size: 30
1858068 CACAAGTCAG
**
1858078 GGCACCTTTCCAAAGCCCACACAAGTTGGT
1 GGCACCTAACCAAAGCCCACACAAGTTGGT
* *** *
1858108 GGCATCTTTGTCAAAGCCCACACAAGTTGGC
1 GGCA-CCTAACCAAAGCCCACACAAGTTGGT
* *
1858139 GGCACCCAATCAAAGCCCACACAAGTTGGT
1 GGCACCTAACCAAAGCCCACACAAGTTGGT
*
1858169 GGCACCATAACCAAAGTCCACA
1 GGCACC-TAACCAAAGCCCACA
1858191 AGTCAGTGGC
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
30 31 0.45
31 38 0.55
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (30 bp):
GGCACCTAACCAAAGCCCACACAAGTTGGT
Found at i:1858528 original size:75 final size:77
Alignment explanation
Indices: 1858388--1858528 Score: 198
Period size: 75 Copynumber: 1.9 Consensus size: 77
1858378 CCTTTCAAAG
* * * *
1858388 CCCATAAGTCAGTGGCATCCCTTTTCAAAGCCCACAAGTCAGTGGCACACCTTTTCAAAGTTAAA
1 CCCATAAGTCAATGGCAACCCTTTTCAAAGCCCACAAGTCAGCGGCACACCTTTTCAAAGCTAAA
1858453 AAGTCAGTGGCA
66 AAGTCAGTGGCA
* *
1858465 CCCATAAGTCAATGG-AACCC-TTTCAAAGCCCATAAGTCAGCGGGACA-CTTTTCAAAGCCTAA
1 CCCATAAGTCAATGGCAACCCTTTTCAAAGCCCACAAGTCAGCGGCACACCTTTTCAAAG-CTAA
1858527 AA
65 AA
1858529 CTTAATGGCA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
74 10 0.18
75 29 0.51
76 4 0.07
77 14 0.25
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (77 bp):
CCCATAAGTCAATGGCAACCCTTTTCAAAGCCCACAAGTCAGCGGCACACCTTTTCAAAGCTAAA
AAGTCAGTGGCA
Found at i:1858577 original size:30 final size:29
Alignment explanation
Indices: 1858481--1861249 Score: 1002
Period size: 29 Copynumber: 94.7 Consensus size: 29
1858471 AGTCAATGGA
*
1858481 ACCC-TTTCAAAGCCCATAAGTCAGCGGG-
1 ACCCTTTTCAAAGCCCACAAGTCAG-GGGC
* * * * * **
1858509 ACACTTTTCAAAGCCTAAAACTTAATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
** * *
1858538 AAACTTTTCAAAACCCACAAGTCGGGGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
*
1858567 ACCCCTTTTCAAAGCCCACAAGTCAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1858597 ACCCTTTTCAAAGCCAACAAGTCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1858626 A-ACTCTTTCTAAAGCCACACAAAT-TGGTGGC
1 ACCCT-TTTC-AAAGCC-CACAAGTCAGG-GGC
* * * *
1858657 ACTC-TTCCAAAACCCACAAGTCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1858685 A-CCGTTTCGAAAGCCCACACAAGT-TGGTGGC
1 ACCCTTTTC-AAAG-CC-CACAAGTCAGG-GGC
*
1858716 A-CCTTTGTCAAAGCTCGCACAAGT-TGGCGGC
1 ACCCTTT-TCAAAGC-C-CACAAGTCAGG-GGC
* *
1858747 A-CCTAGTT-AAAGCACACACAAGT-TGGTGGC
1 ACCCT-TTTCAAAGC-C-CACAAGTCAGG-GGC
*** * * *
1858777 ACCCAAATCAACGGCCACAAGTCA-GTGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1858805 TATCCCCTTTCAAAGCCCACAAGTTAGTGGC
1 -A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1858836 ACCCCTTTCAAAGCCCACAAGTCTGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1858865 ACCCTTTTCAATGCCCACAAGTGAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1858894 ACACTTTTCAAAGCACACAAGTCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * **
1858923 ACCTTTTTCAAAGCCCACAAGT-TGGTAAC
1 ACCCTTTTCAAAGCCCACAAGTCAGG-GGC
* * * *
1858952 ACCC-TTTAAAAGCCAACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1858980 ACCAC-ATTCAAAGCCC-CAAGTAAGTGGC
1 ACC-CTTTTCAAAGCCCACAAGTCAGGGGC
* * **
1859008 ACGCTTTTCAAAGCCCACAAGTTAAAGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1859037 ATCATTTTCAAAGCCCACAAGTC-GATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAG-GGGC
* * *
1859066 AACTCTTATCAAAGCCCACACAAATC-GGTGGC
1 -ACCCTTTTCAAAG-CC-CACAAGTCAGG-GGC
* * *
1859098 A-CCTTTCCAAAACTCACAAGTCA-GGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1859125 ACCCTTTCCAAAGCCCACACAAGT-TGGTGGC
1 ACCCTTTTCAAAG-CC-CACAAGTCAGG-GGC
* *
1859156 A-CCTTTGTCAAATCCCGCACAAGT-TGGCGGC
1 ACCCTTT-TCAAA-GCC-CACAAGTCAGG-GGC
** * *
1859187 ACCC-AATCAAAGCCCACACAAT-TGGTGGC
1 ACCCTTTTCAAAGCCCACA-AGTCAGG-GGC
** * *
1859216 ACCCTAATCAAAGCCCACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1859245 ACCC-TTTCAATGCCCGCAAG-CTGGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGG-GGC
* **
1859273 ACCCCTTTCCAAAGCCCACAAGTCAATGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * *
1859303 ACGCTTTTCAAAGCCCACAGGTTAGCGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * * *
1859332 ACCTCCTTTCAATGCCTACAAGTTAGTGGC
1 ACC-CTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1859362 ATCCCCTTTCAAAGCTCACAAGTCAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1859392 ACCC-TTCCAAA-ACCAGCAAGTCAGTGGC
1 ACCCTTTTCAAAGCCCA-CAAGTCAGGGGC
** ** **
1859420 ACCC-TCCCAAAGCCCACAAGTTTGTTGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* ** * * *
1859448 ACCC-TTTCGAAGTGCATAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
*
1859476 ACCCCTTTTCAAAGCCCACAAGTCAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* **
1859506 ACCCCTTTTCAAAGCCCATAAGGT-AAAGGC
1 A-CCCTTTTCAAAGCCCACAA-GTCAGGGGC
* * * *
1859536 ACCC-TTCCTAAGCCAACAAGTCCA-TGGC
1 ACCCTTTTCAAAGCCCACAAGT-CAGGGGC
* *
1859564 ACCC-TTTAAAAGCCCACAAGTCAGCGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * *
1859592 ACACTTCTCAAAGCCCACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1859621 ACACTTTTCAAAGCCCACAAGTCGGTGGGC
1 ACCCTTTTCAAAGCCCACAAGTCAG-GGGC
* * *
1859651 ACCCCATTTCAAAGCCCACAAGTTAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * **
1859681 ACCCTTTTGAAAGCACACAAGTCAATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * *
1859710 AACTCTTTTCAAAGCCCACACAAATTAGTGAG-
1 -ACCCTTTTCAAAG-CC-CACAAGTCAG-GGGC
** * * * **
1859742 ACCC-TCCCAAAACACACATGTCAGTCGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1859770 ACCCGTTTCAAAACCCACACAAGT-TGGTGGC
1 ACCCTTTTC-AAAGCC-CACAAGTCAGG-GGC
* * *
1859801 A-CTTTTGTCGAAGCCCACACAAGT-TGGCGGC
1 ACCCTTT-TCAAAG-CC-CACAAGTCAGG-GGC
* * *
1859832 ATCC-TATCAAAGCCCACACAAGT-TGGTGGC
1 ACCCTTTTCAAAG-CC-CACAAGTCAGG-GGC
** * * *
1859862 ACCCTAATCAAAGCCATACAAGTTAGTGGC
1 ACCCTTTTCAAAGCC-CACAAGTCAGGGGC
* * *
1859892 ATCCCCTTTCAAAGCCCACAAGTTAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1859922 AACCTTTTTAAAGCCCACAAGTC-GGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGG-GGC
* * ** * *
1859951 ACAGC-TTTCAAATCTTACAAGTCCGTGGC
1 AC-CCTTTTCAAAGCCCACAAGTCAGGGGC
* * **
1859980 ATACC-TTTCAAAGCCCACAAGTTAATGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
** * *
1860009 ACATTTTTCAAAGCCCACAAAT-TGGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGG-GGC
* * *
1860038 AACACTTTCCAAAGCTCACACAAATC-GGTGGC
1 -ACCCTTTTCAAAGC-C-CACAAGTCAGG-GGC
* *
1860070 -CCC-TTTCTAAAACCCATAAGTCAGGGGC
1 ACCCTTTTC-AAAGCCCACAAGTCAGGGGC
* * *
1860098 ACCCTTTCCACAGCTCACACAAGT-TGGTGGC
1 ACCCTTTTCAAAGC-C-CACAAGTCAGG-GGC
* * *
1860129 A-CCTTTGTCAAAGCTGGCACAAGT-TGACGGC
1 ACCCTTT-TCAAAGC--CCACAAGTCAG-GGGC
** * *
1860160 ACCC-AATCAAAGTCCACACAAGT-TGGTGGA
1 ACCCTTTTCAAAG-CC-CACAAGTCAGG-GGC
** * * * * *
1860190 ACCCTAATCGAAGCCCATAAGTTAGTGGT
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* ** *
1860219 ACCCCTTTCAAAGCCCACAACCCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1860248 ACCCCTTTTCAAAGCCCACAAGTTAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * **
1860278 ACACTTTTGAAAAG-CCACAAGTCAATGGC
1 ACCCTTTT-CAAAGCCCACAAGTCAGGGGC
* * * *
1860307 ACCTCTTTTCAATGCCTACAAGT-TGTTGGC
1 ACC-CTTTTCAAAGCCCACAAGTCAG-GGGC
** * * *
1860337 ATCCCTTCACAAAGCTCAGAAGTCAGTGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1860367 ACCC-TTTCAAAGCCCATAAATCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * * *
1860395 ACCCTTTT-AAAGCGCATAAATTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * * *
1860423 ACCCTATT-AAAGCACATAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * *
1860451 ACCCTTTTTCAAAACCCAGAAGTCTGTGGC
1 ACCC-TTTTCAAAGCCCACAAGTCAGGGGC
* ** * * *
1860481 ACCC-TTCCAAAGCATAAAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1860509 ACCCTTTT-AAAGCCAACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* **
1860537 ACCCCTTTCAAAGCCCACAAGTCAATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * *
1860566 ACACTTTTCAAAACCAACAAGTCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* *
1860595 ACCCTTTTTAGAGCCCACAAGTC-GGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGG-GGC
* * * * *
1860624 AACTCTTTTCAAAGCGCATAAGTTAGTGGC
1 -ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* **
1860654 ACCC-TTCCAAAGCCCACAAGTCAACGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
** * *
1860682 A-CC-TTTCAAAGTGCACAAGTCAGCGAC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* ** * *
1860709 ACACTTTTCAAAGCTTACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * *
1860738 TCACTTTTCAAAGCCTACAAGTC-GATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAG-GGGC
* * **
1860767 ACCCCTTTCCAAAGCCCATAAGTCA--ATC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1860795 ACACTTTTCAAAGCCCAAAAG-CAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1860823 ACTTCC-TTTCAATGCCTACAAGTCAGTGGC
1 AC--CCTTTTCAAAGCCCACAAGTCAGGGGC
* ** **
1860853 ATCCCTTTTCTAAGATCACAAGTCAATGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
* * **
1860883 ACCC-TTCCAAAGCCCATAAGAT-AGTTGC
1 ACCCTTTTCAAAGCCCACAAG-TCAGGGGC
* * * *
1860911 A-CCGTTTCAAAACCCATAAGTCAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * *
1860939 ACCCATTTTTAAAGCCCATAAGTCAGTGGC
1 ACCC-TTTTCAAAGCCCACAAGTCAGGGGC
*
1860969 ACCCCTTTTCAAAGCCCATAAGTCAGGGGC
1 A-CCCTTTTCAAAGCCCACAAGTCAGGGGC
** **
1860999 ACCC-TCCCAAAGCCCACAAGTCAATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
*
1861027 ACCCTTTT-AAAGCCCACAAGTCAGCGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
** ** * *
1861055 ACAGTTTTCAAAGTGCACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
* * * **
1861084 ACTCC-TTTCAAAGCCTATAAGTTAATGGC
1 AC-CCTTTTCAAAGCCCACAAGTCAGGGGC
** * **
1861113 ATACTTTTCAAAACCCACAAGTCAATGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGGGGC
** *
1861142 ACATTTTTCAAAGCCCACAAGT-TGGTGGC
1 ACCCTTTTCAAAGCCCACAAGTCAGG-GGC
* * *
1861171 AACTCTTCTCAAAGCCCACACAAATCA---GC
1 -ACCCTTTTCAAAG-CC-CACAAGTCAGGGGC
* * *
1861200 AGCCCTTTTCTAAAACCTACAAGTTAGGGGC
1 A-CCCTTTTC-AAAGCCCACAAGTCAGGGGC
*
1861231 ACCCTTTCCAAAGCCCACA
1 ACCCTTTTCAAAGCCCACA
1861250 CAAGTTGGTG
Statistics
Matches: 2099, Mismatches: 492, Indels: 299
0.73 0.17 0.10
Matches are distributed among these distances:
26 2 0.00
27 56 0.03
28 452 0.22
29 744 0.35
30 590 0.28
31 208 0.10
32 46 0.02
33 1 0.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.22
Consensus pattern (29 bp):
ACCCTTTTCAAAGCCCACAAGTCAGGGGC
Found at i:1858903 original size:58 final size:58
Alignment explanation
Indices: 1856626--1865594 Score: 4039
Period size: 59 Copynumber: 152.4 Consensus size: 58
1856616 AGAAACAACT
* * * * * *
1856626 ACAAGTCAGTGGCACCCCTTTTTTAAAAGCCCATAAGTTAGTAGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCA-CCC--TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * *
1856686 ACAGGTTAGTGGCACCC-TTCCAAAGCTC-TAACTTAGTGGCACCCTTTTTAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
** * *
1856742 ACAAGCCAGTGGCACCTCTTTTCAAAGCCTAAAAGTCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * * *
1856802 ACAAGTTAGTGGCA-TCTTTCCAAACCCCACAGGTTAGTGGC-CCCCTTCCAAAGACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAG-CCC
* * * *
1856859 -TAAGTTAGTGGCACCTTTTTCAAAGCCCACAAGTC-GATGGTAACTCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAG-TGG-CACCCTTTTCAAAGCCC
* * * * ** *
1856917 ATACAA-ATCGATGGCACCC-ATCCAAAG--CACAAGTTGGTGGCATCTCCTTCT-AAAGCCCAC
1 --ACAAGTTAG-TGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-C-CCTTTTCAAAG-CC-C
* ** * * * * * *
1856977 ACAAGCTCA-TACCAACTCTTTTCAAAGCTCACACAAATCGGTGGC-CCCCTTCCAAAACCC
1 ACAAG-TTAGTGGC-ACCCTTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1857037 ACAAGTCAGGGGCA-CCTTTTCCAAAGCCTACATAAGTTAGTGGCA-CCTTTGGCAAAGCCCGC
1 ACAAGTTAGTGGCACCCTTTT-CAAAGCC--CACAAGTCAGTGGCACCCTTT-TCAAAG-CC-C
* *** ** * ** **
1857099 ACAAGTTGGCAACACCCAGTT-AAAGCCCATAAAAGTTGGTGGCACCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC--ACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * *
1857158 ACAAGTTAGTGGCTTCCCCTTTT-AAAGCTCATAAGTCAATGGTAACC-TTCCAAAGCCC
1 ACAAGTTAGTGGC--ACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* *
1857216 ACAAGTCAGTGGCACCC-TTTCAAAACCCACAAGTCAG-GGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
** *
1857273 ACAAGCCAGTGGCACTCCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCAAAGCCA
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * *
1857333 ATAAGTCAGTGGCACACTTTTCAAAGCTCACAAGTCAGTGGCACCCCTTTTGAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * * *
1857392 ATACGTTAGGGGCACCCCTTTTCAAAGCTCACAAGTTAGTGGCACCC-TTCCAAAACCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** * *
1857450 ACAGGTTAGTGGCCCCCCTTCCAAAGCCTC-TTAGTCAGTGGCACCTTTTTTAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCC-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * *
1857508 ACAAGTCAGTGGCAACTCTTTTCAAAGCCCATACAAATCGGTGGCACCC-ATCCAAAG--C
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC--ACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1857566 ACAAGTTGGTGGCA-CCTCCTTCTAAAGCGCACACAAG-CTAGTAGCAACTCTTTCCAAAGCCCA
1 ACAAGTTAGTGGCACCCT-TTTC-AAAGC-C-CACAAGTC-AGTGGC-ACCCTTTTCAAAG-CC-
1857629 C
58 C
* ** * * * *
1857630 ACAAATCGGTGGC-CCC-TTCCAAAACCCACAAGTCAGGGGCA-CCTTTCCAAAGCCTAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCC--C
* * * ** * * **
1857687 ATAAGTTGGTGGCA-CCTTTGGCAAAGCCCGCACAAGTTGGCGGCACTC-AGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAG-CC-C
* ** *
1857748 ACAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTTAGTGGCATCCTCTTTT-AAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CC-CTTTTCAAAGCCC
* * * * * *
1857807 ACTAGTCAGTGGCACCCTTTTCAAAAG-CCATAAGTTAGTGGCACACTTTTCAAACCCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * * *
1857865 ATAAGTCAATGGCACTCTTTTTTAAAGCCCACAAGTCTGTGGTACCC-TTCCAAGGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
*
1857923 ACAAGTTAGTGGCACCCTTTT-AAAGCCAACAAGTCTA-TGGCACCAC-TTTCGAAA-CCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTC-AGTGGCACC-CTTTTC-AAAGCCC
* * * *
1857980 ACAAGTCAGTGGCACACTTTTTAAAGCCCACAAGTC-GTTGGCAACTCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAG-TGGC-ACCCTTTTCAAAGCCC
* ** * * * * *
1858039 ACATAAATCGGGGGCACCCTTCT-AAAACTCACAAGTCAG-GGCA-CCTTTCCAAAGCCCAC
1 AC--AAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAG-CC-C
* * ** * **
1858098 ACAAGTTGGTGGCA-TCTTTGTCAAAGCCCACACAAGTTGGCGGCACCC-AATCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAG-CC-C
* * *** * * **
1858159 ACAAGTTGGTGGCACCATAACCAAAGTCCACAAGTCAGTGGCACCCCTTTCCATGGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
** * * * * * * *
1858218 ACAAGCCAATGGCACACATTTCAAAGTCCACAAGTTAGTGGCACTTCTTTTCAATGCCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTTCAAAGCC-C
** * ** * *
1858278 -CAAGTCCGTGGCATCCCTTTTCAAAACTTACAAGTCAGTGGTACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1858335 ACAAGTCAGTGGCACCC--TCCGAAAGCCCACAAGTTAGTTGCACCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * ***
1858391 ATAAGTCAGTGGCATCCCTTTTCAAAGCCCACAAGTCAGTGGCACACCTTTTCAAAGTTA
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTTCAAAGCCC
* * ** * * ** ** * ** **
1858451 AAAAGTCAGTGGCACCCATAAGTCAATGGAACC-C-TTTCA-AAGC-CCATAAGTC--AGCGGG
1 ACAAGTTAGTGGCACCC-T-TTTCAA-AG-CCCACAAGTCAGTGGCACCCT-TTTCAAAGC-CC
** ** * ** * * *
1858509 ACACTTTTCAAAGCCTAAAACTTAATGGCAAACTTTTCAAAACCCACAAGTCGGGGGCACCCCTT
1 ACA-AGTT-AGTGGC--ACCCTT--T----------TCAAAGCCCACAAGTCAGTGGCA-CCCTT
1858574 TTCAAAGCCC
49 TTCAAAGCCC
* * *
1858584 ACAAGTCAGTGGCACCCTTTTCAAAGCCAACAAGTCAGTGGCA-ACTCTTTCTAAAGCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCT-TTTC-AAAGCC-C
* * * * * *
1858644 ACAAATTGGTGGCACTC-TTCCAAAACCCACAAGTCAGTGGCA-CCGTTTCGAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTC-AAAG-CC-C
* ** * *
1858703 ACAAGTTGGTGGCA-CCTTTGTCAAAGCTCGCACAAGTTGGCGGCA-CCTAGTT-AAAGCACAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAGC-C-CACAAGTCAGTGGCACCCT-TTTCAAAGC-C-C
* *** * * *
1858764 ACAAGTTGGTGGCACCCAAATCAACGGCCACAAGTCAGT-GCTATCCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGC-A-CCCTTTTCAAAGCCC
* * *
1858823 ACAAGTTAGTGGCACCCCTTTCAAAGCCCACAAGTCTGTGGCACCCTTTTCAATGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1858881 ACAAGTGAGTGGCACACTTTTCAAAGCACACAAGTCAGTGGCACCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* ** * * * *
1858939 ACAAGTTGGTAACACCC-TTTAAAAGCCAACAAGTTAGTGGCACCAC-ATTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACC-CTTTTCAAAGCCC
* * * ** * *
1858996 -CAAGTAAGTGGCACGCTTTTCAAAGCCCACAAGTTAAAGGCATCATTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * *
1859053 ACAAG-TCGATGGCAACTCTTATCAAAGCCCACACAAATCGGTGGCA-CCTTTCCAAAACTC
1 ACAAGTTAG-TGGC-ACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * ** *
1859113 ACAAGTCAG-GGCACCCTTTCCAAAGCCCACACAAGTTGGTGGCA-CCTTTGTCAAATCCCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTT-TCAAA-GCC-C
* * ** * ** **
1859174 ACAAGTTGGCGGCACCC-AATCAAAGCCCACACAATTGGTGGCACCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACA-AGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1859232 ACAAGTTAGTGGCACCC-TTTCAATGCCCGCAAG-CTGGTGGCACCCCTTTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTC-AGTGGCA-CCCTTTTCAAAGCCC
* * * * * * * * *
1859290 ACAAGTCAATGGCACGCTTTTCAAAGCCCACAGGTTAGCGGCACCTCCTTTCAATGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACC-CTTTTCAAAGCCC
* * * *
1859349 ACAAGTTAGTGGCATCCCCTTTCAAAGCTCACAAGTCAGTGGCACCC-TTCCAAA-ACC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* ** ** * * **
1859406 AGCAAGTCAGTGGCACCC-TCCCAAAGCCCACAAGTTTGTTGCACCC-TTTCGAAGTGC
1 A-CAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
*
1859463 ATAAGTTAGTGGCACCCCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * ** * * * *
1859523 ATAAGGTAAAGGCACCC-TTCCTAAGCCAACAAGTCCA-TGGCACCC-TTTAAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGT-CAGTGGCACCCTTTTCAAAGCCC
* * * * * *
1859579 ACAAGTCAGCGGCACACTTCTCAAAGCCCACAAGTTAGTGGCACACTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
** * * * *
1859637 ACAAGTCGGTGGGCACCCCATTTCAAAGCCCACAAGTTAGTGGCACCCTTTTGAAAGCAC
1 ACAAGTTAGT-GGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * ** * *
1859697 ACAAGTCAATGGCAACTCTTTTCAAAGCCCACACAAATTAGTGAG-ACCC-TCCCAAAACAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAG-CC-CACAAGTCAGTG-GCACCCTTTTCAAAGCCC
* * * * * ** * *
1859757 ACATGTCAGTCGCACCCGTTTCAAAACCCACACAAGTTGGTGGCA-CTTTTGTCGAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCC-CACAAGTCAGTGGCACCCTTT-TCAAAG-CC-C
* * * * ** ** *
1859819 ACAAGTTGGCGGCATCC-TATCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAGCCAT
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAGCC-C
* * * *
1859879 ACAAGTTAGTGGCATCCCCTTTCAAAGCCCACAAGTTAGTGGCAACCTTTTTAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
** * * ** * *
1859938 ACAAGTCGGTGGCACAGC-TTTCAAATCTTACAAGTCCGTGGCATACC-TTTCAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* ** * ** * *
1859996 ACAAGTTAATGGCACATTTTTCAAAGCCCACAAATTGGTGGCAACACTTTCCAAAGCTCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTCAAAGC-C-C
* ** * * * * *
1860057 ACAAATCGGTGGC-CCC-TTTCTAAAACCCATAAGTCAGGGGCACCCTTTCCACAGCTCAC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGC-C-C
* * * * **
1860116 ACAAGTTGGTGGCA-CCTTTGTCAAAGCTGGCACAAGT-TGACGGCACCC-AATCAAAGTCCAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAGC--CCACAAGTCAG-TGGCACCCTTTTCAAAG-CC-C
* * ** * * * * *
1860177 ACAAGTTGGTGGAACCCTAATCGAAGCCCATAAGTTAGTGGTACCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
*** * * *
1860235 ACAACCCAGTGGCACCCCTTTTCAAAGCCCACAAGTTAGTGGCACACTTTTGAAAAG-CC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-CAAAGCCC
* * * * * ** *
1860294 ACAAGTCAATGGCACCTCTTTTCAATGCCTACAAGT-TGTTGGCATCCCTTCACAAAGCTC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAG-TGGCA-CCCTTTTCAAAGCCC
* * * * *
1860354 AGAAGTCAGTGGCACCC-TTTCAAAGCCCATAAATCAGTGGCACCCTTTT-AAAGCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * *
1860410 ATAAATTAGTGGCACCCTATT-AAAGCACATAAGTTAGTGGCACCCTTTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCC-TTTTCAAAGCCC
* * ** * * *
1860468 AGAAGTCT-GTGGCACCC-TTCCAAAGCATAAAAGTTAGTGGCACCCTTTT-AAAGCCA
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1860524 ACAAGTTAGTGGCACCCCTTTCAAAGCCCACAAGTCAATGGCACACTTTTCAAAACCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * *
1860582 ACAAGTCAGTGGCACCCTTTTTAGAGCCCACAAGTCGGTGGCAACTCTTTTCAAAGCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTCAAAGCCC
* * ** **
1860641 ATAAGTTAGTGGCACCC-TTCCAAAGCCCACAAGTCAACGGCA-CC-TTTCAAAGTGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** * * * *
1860696 ACAAGTCAGCGACACACTTTTCAAAGCTTACAAGTTAGTGGCTCACTTTTCAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1860754 ACAAG-TCGATGGCACCCCTTTCCAAAGCCCATAAGTCAAT--CACACTTTTCAAAGCCC
1 ACAAGTTAG-TGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * **
1860811 AAAAG-CAGTGGCACTTCC-TTTCAATGCCTACAAGTCAGTGGCATCCCTTTTCTAAGATC
1 ACAAGTTAGTGGCAC--CCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * * *
1860870 ACAAGTCAATGGCACCC-TTCCAAAGCCCATAAGAT-AGTTGCA-CCGTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAG-TCAGTGGCACCCTTTTCAAAGCCC
* * * *
1860926 ATAAGTCAGTGGCACCCATTTTTAAAGCCCATAAGTCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * ** *
1860986 ATAAGTCAGGGGCACCC-TCCCAAAGCCCACAAGTCAATGGCACCCTTTT-AAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * ** ** * *
1861042 ACAAGTCAGCGGCACAGTTTTCAAAGTGCACAAGTTAGTGGCACTCC-TTTCAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTTCAAAGCCC
* * ** * * **
1861100 ATAAGTTAATGGCATACTTTTCAAAACCCACAAGTCAATGGCACATTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * *
1861158 ACAAGTTGGTGGCAACTCTTCTCAAAGCCCACACAAATCA---GCAGCCCTTTTCTAAAACCT
1 ACAAGTTAGTGGC-ACCCTTTTCAAAG-CC-CACAAGTCAGTGGCA-CCCTTTTC-AAAGCCC
* * ** ** *
1861218 ACAAGTTAGGGGCACCCTTTCCAAAGCCCACACAAGTTGGTGG-TTCCTTTGTCAAATCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTT-TCAAAGCCC
* * * ** ** * ** *
1861278 GC-A-TAAGTTGGCAGCACTCAATCAAAGCCCACACAAGTTGGTGGCACCGTAATCGAAGCCC
1 ACAAGTTAG-TGGCA-CCCT-TTTCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
**
1861339 ACAAGTTAGTGGCACCC-TTTCAAAGCCCACAAGTTGGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* ** ** * * * * *
1861397 ACAAGTCAGTGG-ACAAGTTAGCGACACCCCTTTTCAAAGCCTACAAGTTAGTG-ACACCCTTCC
1 ACAAGTTAGTGGCAC-CCTTTTC-AAAGCCC---AC-AAG--T-C-AG-T-G-GCAC-CCTTTTC
1861460 AAAGCCC
52 AAAGCCC
* * * * * * * **
1861467 CCATGTCTA-TGGC-CCCCTTCCAAAGCCCCCAAGTTAGTGCCACTTTTTTCAAAGCCC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
** * * * *
1861524 ACAAGTCGGTGTCAACTCTTTTCAAAGCCCATACAA-TC-GATGGCACCC-ATCCAAAG--C
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC--ACAAGTCAG-TGGCACCCTTTTCAAAGCCC
* * * * ** *
1861581 ACAAGTTGGTGGCATTTCCTTCT-AAAGCCCAAACAAG-CTTGTACCAACTCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA--CCCTTTTCAAAGCCC--ACAAGTC-AGTGGC-ACCCTTTTCAAAGCCC
** * * * * *
1861643 ACACAAATCGATGG-GCCC-TTCCAAAACCCACAAGTCAAG-GGCACCCTTTCCAAAGCCTAC
1 ACA-AGTTAG-TGGCACCCTTTTCAAAGCCCACAAGTC-AGTGGCACCCTTTTCAAAGCC--C
* * ** ***
1861703 AGAAGTTAGTGGCACCATTGGCAAAGCCCGCACAAGT---TGGCAACACCCAGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-CACAAGTCAGTGGC-AC-CCTTTTCAAAG-CC-C
** * ** * * *
1861764 ACAAGTCGGTGGCTCCCTAATCAATGCCCAAAAG-CTAGTGGCATCCCCTTTT-AAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTC-AGTGGCA--CCCTTTTCAAAGCCC
* * * * * * *
1861823 ACAAGTCAATGGCACCC-ATCCAAAGCCTACAAGTTAGTGGCACCC-TTTCAAATCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** *
1861879 ATAAGTTAGTGGCACCCATTTT-AAAGCCGACAAGCCAATGAAATCTCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* ** * **
1861938 ACAAGATAGTGGCACCGCTTTTCAAAGCTAACAAGTAAGTGGCACATTTTTCAAAGCCC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** * * * * *
1861997 ATAAGTCAGTGGCACCTCTTTTCGATGCTTATAAGTCAATGGCATCCCTTCTCGAAGCTC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * *
1862057 ATAAGTCAGTGGCACCC-TTCCAAAAGCCCACAAGTTAGCGGCACCC-TTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1862114 ACAAGTTAGTGGCA-CCTCTTTCAAAGCCCACAAG-CTAGTGGCACCTTTTTTAAGGCTC
1 ACAAGTTAGTGGCACCCT-TTTCAAAGCCCACAAGTC-AGTGGCACCCTTTTCAAAGCCC
* ** * *
1862172 ACAAGTCAGTGGCACCCCTTTTCAAAGCAAACAAGTCAGTGACACACTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1862231 ACAAGTTAGTGGTACCTCTTTTCAAAGCCAACAAGTCAATGGCACCCCTTTTCAATGCCC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * *
1862291 ACAAGTTAGTGGCACCC-TTCCAAAACCCACAAGTTAGTGGCCCCCCTTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * ** * * * * *
1862348 CCTAGTCAGCAGCACCTTTTTCAAAGCCCATAAGTTAGTGGCAACTCTTTTCAAAGCCTAT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTCAAAGCC--C
* * ** * * ** * ** ** *
1862409 ACAAATTGGTGGCA-CCAATCCAAAG--CATAAGTTTGCGGCATTC-AGTAAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAG-CC-C
* ** ** * * **
1862465 ACAAGTTGGTGGGTCCCTAATCAAAGCCCATAAGTTAGTGGCATCCTCTTTT-ATGGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CC-CTTTTCAAAGCCC
* * * * * * * *
1862524 ATAAGTCAGTGGCACCCCTTTCAAAAG-CCATAAGTTAGTGGAACACTATTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * *
1862582 ATAAGTCAATAGG-ACCTTTTTTCAAAGCCCACAAGTTAGTGGCACCCCTTCCAAAGCCC
1 ACAAGTTAGT-GGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1862641 ACAAGTTAGTGGCACCCTTTT-GAGGACAACAAGTAAGTGGCATCCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * * * *
1862698 AAAAGTTAGTGGCACACTTTTCGAAGCGCACACAAATCGGTGGCACCC-TTCCAAAACTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * **
1862757 ACAAGTCAG-GGCACTCTTTCCAAAGCCCACACAAGTTGGTGGCA-CCTTTGTCAAAGCCCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTT-TCAAAG-CC-C
* * * * ** * *
1862818 ACAAATTGGCGGTA--CTAAATCAAAGCCCACACTTGT-AGGTGGCA-CCTTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCT-TTTCAAAGCCCACA--AGTCA-GTGGCACCCTT-TTCAAAGCCC
* *
1862877 ACAAGTTAGTGGCACCC-TTTCAATGCCCACAAG-CTAGTGGCACCCCTTTTTAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTC-AGTGGCA-CCCTTTTCAAAGCCC
* * * * * ***
1862935 ACAGGCTAGTGGCACACTTTTCAAAGCCTACAAGTCAGTGGCACCTTCTTTT-AATGTGT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACC--CTTTTCAAAGCCC
* * * * * * *
1862994 ACAAGTCAATGGTATCCCTTTGCAAAGCTCACAAGTCAGTGGTACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* ** * ** * * *
1863052 ACAGGCGAGTGGCACTCTCCT-AAAGCCCACAAGTCAGTTGC-TCCTTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1863108 ATAAGTCAGTGGCACTCATTTTCAAAGCCCACAAGTTAGTGGCAACCATTTTCAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTCAAAGCCC
* * * * * * *
1863168 ATAAG-CAGTGGCA-CCTTTCCGAAGCCCACAAGTCCGTGGCACAC-TTTCAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * ** * * * * *
1863223 ACAAGTCAGAGGCACTTTTTTTCAAAGCCCATAAGTTAGTGGCACACTCTTCAAAGCCG
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** * * *
1863282 AAAAGTCAGTGGCAACTCTTTTCAAAGCCCACACAAATTGGAGGCACCC-TTCCAAAACCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * **
1863342 ACTAGTTAGTCGG-ACACTTTCCAAAGCCCACACAAGTTGGTGGCA-CCTTTGTCAAAGCCCAC
1 ACAAGTTAGT-GGCACCCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTT-TCAAAG-CC-C
* * * ** **
1863404 ACAAGTTGGCGGCACCC-TATCAAAGCACACACAAGTTGGTGGCACCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * *
1863463 AAAAGTCAATGCCATCCCCTTTCAAAGCGCACAAGTCAGTGGCATCCC-TTTCAAAGCCA
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * *
1863522 ATAAGTCAGTGACACACTTTTCAAAACCCACAAGTCAGTGGCA-TCTTTGTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTT-TCAAAGCCC
* * *
1863580 ACAAGTTGGTGGCACCCTTTT-AAAGCCAACAAGTTAGTGGCACCCCTTTT-AAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * *
1863637 ACAAGTAAGTGGCACACC-TTTCAAAGCCCACAAGTTAGTGGCACCCTATTCAAAGCAC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** * * *
1863695 ACAAG-TCGATGGCAACTCTTTTCAAAGCTCAAACAAATTGGTGGCA-CCTTTCCAAAACTC
1 ACAAGTTAG-TGGC-ACCCTTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * *
1863755 ATAAG-TCGAGGCACCCTTTCCAAAGCCCACATAAGTTAGTGGCACCTTTGTTAAAACCCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCAC--AAGTCAGTGGCACCCTT-TTCAAAGCC-C
** ** ** * *
1863816 ACAAG-T--TGGCAACACCTAATCAAAGCCCACACAAGTTGGTGGCACCCTAATCAAAACTC
1 ACAAGTTAGTGGC-AC-CCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * *
1863875 ACATGTTAGTGGCTCTC-TTTCAATGCCCATAA-ACTAGTGGCACCCCTTTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTC-AGTGGCA-CCCTTTTCAAAGCCC
* * * * * * *
1863933 A-AAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCACCTCCTTTCAATGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACC-CTTTTCAAAGCCC
* *
1863991 ACAAGTTAGTGGCATCCCTTTTCAAAGCCCACAAGTCAATGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1864049 ACAAGTCAGGGGCACCC-TCTCAAAGCCCACAAGTTAGTTGCACCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* *
1864105 ATAAGTTAGTGGCACCCATTTTCAAAGCCCACAAGTCAATGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * *
1864165 AAAAAG-CAGTGGCACCC-TTCCAAA-CCCATAAGTCCA-TGGCACCCTTTT-AAAGCCC
1 -ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGT-CAGTGGCACCCTTTTCAAAGCCC
* * * ** * ** * *
1864220 ATAAGTCAGCGGCACATTTTTCAAAGCCCACAAGTTAGTGGCACATTTTTGAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1864278 ACAAGTCAAG-GGCACCCCTTTTCAAAGCCTACAAGTCAGTGGCACACTTTTCAAAGCCG
1 ACAAGT-TAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* ** * * * *
1864337 ACAAGTCAGTGGCAACTATTTTCAAAGCCCACGCAAAT-TGCTGGCA-CC-TCTCAAAACCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCCA--CAAGTCAG-TGGCACCCTTTTCAAAGCCC
* ** * *
1864396 ACAAGTCAGTGGCACCCTTTTCAAAGCCTACACAAGTTGGTGGCA-CCTTTGTTAAAGCCGT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCC--CACAAGTCAGTGGCACCCTTT-TCAAAGCC-C
* * * ** * * * *
1864457 ATAAGTTGGCGGCACCCTAATCAAAGCCCTCAAGTTAGTGGCACCCCTTACAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * ** * *
1864515 ATAAGTTAGTGGCACCCCTTTCAAGGCCCACAAGTCAGTGGCATACTTGTAAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * ** * *
1864573 ACAAGTTAGTGGCACCTTTTTCAAAGCTCACAAGTTGGTGGCAACTCTTTTCAAAGCTCAA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTTCAAAGC-C-C
* ** * * * * *
1864634 ACAAATCGGTGGC-TCCTTTCCAAAACCCA-AAGTTAAG-GGCACCCTTTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAG-TCAGTGGCACCCTTTTCAAAGCCC
* * ** * **
1864690 ACAAAAGTTTGTGGCA-CCTTTGTCAAAGCCTGCAAAAGTTGGTGGCAACC-AGTCAAAGCCCAC
1 AC--AAGTTAGTGGCACCCTTT-TCAAAGCC--CACAAGTCAGTGGCACCCTTTTCAAAG-CC-C
* * ** * * * *
1864753 ACAAGTTGGTGCCACCCTAATCGAAGCCAACAAGTTAGTGGCACCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * *
1864811 ACAAGTTAGCGACACCCCTTTTCAAAGCCCACAAGTTAGTAGTACCCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCCACAAGTCAGTGGCACCC-TTTTCAAAGCCC
* * *** * *
1864871 ATAAGTTTGTGGCAGAATTTTCAAAGCCCACAAGTCTGTGGCACCTCTTTTCAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACC-CTTTTCAAAGCCC
* * * *
1864930 ACAAGTGAGTGGCACCCTTTTTCAAAGCCCACAAGTTAGTGGCACCC-TTCCAAAGCTC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * *
1864988 ACAGGTTAGTGGC-CCCCTTCCAAAGCACC-TAAGTTAGTGGCATCTTTTTCAAAGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-CCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * * * *
1865045 ATAAGTCAGTGGCAACTCTTTTCGAAGCTTACACAAATCGGTGGC-CCCTTTTCAAAACAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGC--CCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * *
1865105 ACAAGTGA-TGGCA-CTTTTTCCAACGACTACACAAGTAAGTGGCA-CCTTTGGCAAACCCCGC
1 ACAAGTTAGTGGCACCCTTTT-CAAAG-C-CCACAAGTCAGTGGCACCCTTT-TCAAA-GCC-C
** * ** * **
1865166 ACAAGTT-G-GG-ACCCAGTT-AAAGTTCACACAAGTTGGTGGCACGCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAG--CCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * *
1865222 ACAAGTTAGTGGCATCCCCTTTT-AAAGCCCACAAGTTAATGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCA--CCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * *
1865280 ACAAGTTAGTGGCA-CCATTTGAAAGCCTACAACTCAGTGGCATCCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * * * *
1865337 ATAAGCTAGTGGCCCCGCTTTTCAAAGCCCACAAGTTAGTGGCACACTTTTCAATGGCC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * * * *
1865396 ACAAGTAAATGGCACCTCTTTTTAATGCCTACAAGTCAGTGGCATCCCTTCTCAAAGCTC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAGCCC
* * * * *
1865456 ACAAGTCAGTGGCACCC-TTCCAAAGCCCACAAGTTAGTGGCACCC-ATTCAAAGCCG
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* * * * ** * * **
1865512 ATAAGTTAGTGGCACTCGTTT-GAAGCGTAAAAGTCAGTGGCACCCTTTT-AAGGTGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
* *
1865568 ATAAGTCAGTGGCACCCCTTTTCAAAG
1 ACAAGTTAGTGGCA-CCCTTTTCAAAG
1865595 TGTCGTAACG
Statistics
Matches: 6708, Mismatches: 1676, Indels: 1052
0.71 0.18 0.11
Matches are distributed among these distances:
54 4 0.00
55 85 0.01
56 608 0.09
57 780 0.12
58 1633 0.24
59 1683 0.25
60 997 0.15
61 631 0.09
62 163 0.02
63 22 0.00
64 35 0.01
65 1 0.00
66 1 0.00
68 6 0.00
69 5 0.00
70 24 0.00
71 7 0.00
72 6 0.00
73 5 0.00
74 3 0.00
75 6 0.00
76 3 0.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (58 bp):
ACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCC
Found at i:1861350 original size:29 final size:28
Alignment explanation
Indices: 1861298--1861402 Score: 120
Period size: 28 Copynumber: 3.6 Consensus size: 28
1861288 GCAGCACTCA
*
1861298 ATCAAAGCCCACACAAGTTGGTGGCACCGT
1 ATCAAAG-CC-CACAAGTTGGTGGCACCCT
* *
1861328 AATCGAAGCCCACAAGTTAGTGGCACCCT
1 -ATCAAAGCCCACAAGTTGGTGGCACCCT
*
1861357 TTCAAAGCCCACAAGTTGGTGGCACCCCTT
1 ATCAAAGCCCACAAGTTGGTGGCA-CCC-T
*
1861387 TTCAAAGCCCACAAGT
1 ATCAAAGCCCACAAGT
1861403 CAGTGGACAA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
28 21 0.32
29 20 0.30
30 19 0.29
31 6 0.09
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (28 bp):
ATCAAAGCCCACAAGTTGGTGGCACCCT
Found at i:1861391 original size:30 final size:29
Alignment explanation
Indices: 1856626--1861408 Score: 2208
Period size: 30 Copynumber: 162.4 Consensus size: 29
1856616 AGAAACAACT
* *
1856626 ACAAGTCAGTGGCACCCCTTTTTTAAAAGCCC
1 ACAAGTTAGTGGCA-CCC--TTTTCAAAGCCC
* * *
1856658 ATAAGTTAGTAGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1856686 ACAGGTTAGTGGCACCC-TTCCAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1856714 -TAACTTAGTGGCACCCTTTTTAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** *
1856742 ACAAGCCAGTGGCACCTCTTTTCAAAGCCT
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* *
1856772 AAAAGTCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1856802 ACAAGTTAGTGGCA-TCTTTCCAAACCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1856830 ACAGGTTAGTGGC-CCCCTTCCAAAGACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CCC
* *
1856859 -TAAGTTAGTGGCACCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1856887 ACAAG-TCGATGGTAACTCTTTTCAAAGCCC
1 ACAAGTTAG-TGG-CACCCTTTTCAAAGCCC
* * * *
1856917 ATACAA-ATCGATGGCACCC-ATCCAAAG--C
1 --ACAAGTTAG-TGGCACCCTTTTCAAAGCCC
* *
1856945 ACAAGTTGGTGGCATCTCCTTCT-AAAGCCCAC
1 ACAAGTTAGTGGCA-C-CCTTTTCAAAG-CC-C
* ** *
1856977 ACAAGCTCA-TACCAACTCTTTTCAAAGCTCAC
1 ACAAG-TTAGTGGC-ACCCTTTTCAAAGC-C-C
* ** * * *
1857009 ACAAATCGGTGGC-CCCCTTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1857037 ACAAGTCAGGGGCA-CCTTTTCCAAAGCCTAC
1 ACAAGTTAGTGGCACCCTTTT-CAAAGCC--C
* *
1857068 ATAAGTTAGTGGCA-CCTTTGGCAAAGCCCGC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-C
* *** **
1857099 ACAAGTTGGCAACACCCAGTT-AAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * **
1857127 ATAAAAGTTGGTGGCACCCTAATCAAAGCCC
1 --ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1857158 ACAAGTTAGTGGCTTCCCCTTTT-AAAGCTC
1 ACAAGTTAGTGGC--ACCCTTTTCAAAGCCC
* * * * * *
1857188 ATAAGTCAATGGTAACC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1857216 ACAAGTCAGTGGCACCC-TTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1857244 ACAAGTCAG-GGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
**
1857273 ACAAGCCAGTGGCACTCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
* *
1857303 ACAAGTCAGTGGCACCCCTTTTCAAAGCCA
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * * *
1857333 ATAAGTCAGTGGCACACTTTTCAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1857362 ACAAGTCAGTGGCACCCCTTTTGAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * * *
1857392 ATACGTTAGGGGCACCCCTTTTCAAAGCTC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1857422 ACAAGTTAGTGGCACCC-TTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1857450 ACAGGTTAGTGGCCCCCCTTCCAAAGCCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCC-C
** * * *
1857480 -TTAGTCAGTGGCACCTTTTTTAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1857508 ACAAGTCAGTGGCAACTCTTTTCAAAGCCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC
* ** * *
1857538 ATACAAATCGGTGGCACCC-ATCCAAAG--C
1 --ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1857566 ACAAGTTGGTGGCA-CCTCCTTCTAAAGCGCAC
1 ACAAGTTAGTGGCACCCT-TTTC-AAAGC-C-C
* * * *
1857598 ACAAGCTAGTAGCAACTCTTTCCAAAGCCCAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAG-CC-C
* ** * *
1857630 ACAAATCGGTGGC-CCC-TTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1857657 ACAAGTCAGGGGCA-CCTTTCCAAAGCCTAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCC--C
* * *
1857687 ATAAGTTGGTGGCA-CCTTTGGCAAAGCCCGC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-C
* * * **
1857718 ACAAGTTGGCGGCACTC-AGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* **
1857748 ACAAGTTGGTGGCACCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
1857777 ACAAGTTAGTGGCATCCTCTTTT-AAAGCCC
1 ACAAGTTAGTGGCA-CC-CTTTTCAAAGCCC
* *
1857807 ACTAGTCAGTGGCACCCTTTTCAAAAG-CC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCC
* * *
1857836 ATAAGTTAGTGGCACACTTTTCAAACCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * *
1857865 ATAAGTCAATGGCACTCTTTTTTAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
* * *
1857895 ACAAGTCT-GTGGTACCC-TTCCAAGGCCC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCC
*
1857923 ACAAGTTAGTGGCACCCTTTT-AAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
1857951 ACAAGTCTA-TGGCACCAC-TTTCGAAA-CCC
1 ACAAGT-TAGTGGCACC-CTTTTC-AAAGCCC
* * *
1857980 ACAAGTCAGTGGCACACTTTTTAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858009 ACAAG-TCGTTGGCAACTCTTTTCAAAGCCC
1 ACAAGTTAG-TGGC-ACCCTTTTCAAAGCCC
* ** * * * *
1858039 ACATAAATCGGGGGCACCCTTCT-AAAACTC
1 AC--AAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858069 ACAAGTCAG-GGCA-CCTTTCCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* *
1858098 ACAAGTTGGTGGCA-TCTTTGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-C
* * **
1858129 ACAAGTTGGCGGCACCC-AATCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* * *** *
1858159 ACAAGTTGGTGGCACCATAACCAAAGTCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * **
1858188 ACAAGTCAGTGGCACCCCTTTCCATGGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
** * * * *
1858218 ACAAGCCAATGGCACACATTTCAAAGTCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858247 ACAAGTTAGTGGCACTTCTTTTCAATGCCTC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCC-C
** * **
1858278 -CAAGTCCGTGGCATCCCTTTTCAAAACTT
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1858307 ACAAGTCAGTGGTACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858335 ACAAGTCAGTGGCACCC--TCCGAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCC
*
1858363 ACAAGTTAGTTGCACCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858391 ATAAGTCAGTGGCATCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* ***
1858421 ACAAGTCAGTGGCACACCTTTTCAAAGTTA
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
* * ** * **
1858451 AAAAGTCAGTGGCACCCATAAGTCAATG-GA
1 ACAAGTTAGTGGCACCC-T-TTTCAAAGCCC
*** ** * ** **
1858481 ACCCTTTCA-AAGC-CCATAAGTC--AGCGGG
1 ACAAGTT-AGTGGCACCCT-TTTCAAAGC-CC
** ** * ** * *
1858509 ACACTTTTCAAAGCCTAAAACTTAATGGCAAACTTTTCAAAACCC
1 ACA-AGTT-AGTGGC--ACCCTT--T-TC--A-------AAGCCC
** *
1858554 ACAAGTCGGGGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1858584 ACAAGTCAGTGGCACCCTTTTCAAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858613 ACAAGTCAGTGGCA-ACTCTTTCTAAAGCCAC
1 ACAAGTTAGTGGCACCCT-TTTC-AAAGCC-C
* * * * *
1858644 ACAAATTGGTGGCACTC-TTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858672 ACAAGTCAGTGGCA-CCGTTTCGAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTC-AAAG-CC-C
*
1858703 ACAAGTTGGTGGCA-CCTTTGTCAAAGCTCGC
1 ACAAGTTAGTGGCACCCTTT-TCAAAGC-C-C
* * *
1858734 ACAAGTTGGCGGCA-CCTAGTT-AAAGCACAC
1 ACAAGTTAGTGGCACCCT-TTTCAAAGC-C-C
* *** * *
1858764 ACAAGTTGGTGGCACCCAAATCAACGGCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858793 ACAAGTCAGT-GCTATCCCCTTTCAAAGCCC
1 ACAAGTTAGTGGC-A-CCCTTTTCAAAGCCC
*
1858823 ACAAGTTAGTGGCACCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1858852 ACAAGTCT-GTGGCACCCTTTTCAATGCCC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCC
* * *
1858881 ACAAGTGAGTGGCACACTTTTCAAAGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1858910 ACAAGTCAGTGGCACCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* ** * *
1858939 ACAAGTTGGTAACACCC-TTTAAAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1858967 ACAAGTTAGTGGCACCAC-ATTCAAAGCCC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* *
1858996 -CAAGTAAGTGGCACGCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** * *
1859024 ACAAGTTAAAGGCATCATTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1859053 ACAAG-TCGATGGCAACTCTTATCAAAGCCCAC
1 ACAAGTTAG-TGGC-ACCCTTTTCAAAG-CC-C
* ** * * *
1859085 ACAAATCGGTGGCA-CCTTTCCAAAACTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1859113 ACAAGTCAG-GGCACCCTTTCCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* *
1859143 ACAAGTTGGTGGCA-CCTTTGTCAAATCCCGC
1 ACAAGTTAGTGGCACCCTTT-TCAAA-GCC-C
* * **
1859174 ACAAGTTGGCGGCACCC-AATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * **
1859202 ACACAATTGGTGGCACCCTAATCAAAGCCC
1 ACA-AGTTAGTGGCACCCTTTTCAAAGCCC
*
1859232 ACAAGTTAGTGGCACCC-TTTCAATGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1859260 GCAAGCTGGTGGCACCCCTTTCCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1859290 ACAAGTCAATGGCACGCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * *
1859319 ACAGGTTAGCGGCACCTCCTTTCAATGCCT
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* *
1859349 ACAAGTTAGTGGCATCCCCTTTCAAAGCTC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1859379 ACAAGTCAGTGGCACCC-TTCCAAA-ACC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* **
1859406 AGCAAGTCAGTGGCACCC-TCCCAAAGCCC
1 A-CAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * **
1859435 ACAAGTTTGTTGCACCC-TTTCGAAGTGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1859463 ATAAGTTAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
*
1859493 ACAAGTCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * ** * * *
1859523 ATAAGGTAAAGGCACCC-TTCCTAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1859551 ACAAGTCCA-TGGCACCC-TTTAAAAGCCC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCC
* * * *
1859579 ACAAGTCAGCGGCACACTTCTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1859608 ACAAGTTAGTGGCACACTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** *
1859637 ACAAGTCGGTGGGCACCCCATTTCAAAGCCC
1 ACAAGTTAGT-GGCA-CCCTTTTCAAAGCCC
* *
1859668 ACAAGTTAGTGGCACCCTTTTGAAAGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1859697 ACAAGTCAATGGCAACTCTTTTCAAAGCCCAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAG-CC-C
* ** * *
1859729 ACAAATTAGTGAG-ACCC-TCCCAAAACAC
1 ACAAGTTAGTG-GCACCCTTTTCAAAGCCC
* * * * *
1859757 ACATGTCAGTCGCACCCGTTTCAAAACCCAC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCC-C
* * *
1859788 ACAAGTTGGTGGCA-CTTTTGTCGAAGCCCAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-C
* * * *
1859819 ACAAGTTGGCGGCATCC-TATCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* ** *
1859849 ACAAGTTGGTGGCACCCTAATCAAAGCCAT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCC-C
*
1859879 ACAAGTTAGTGGCATCCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1859909 ACAAGTTAGTGGCAACCTTTTTAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** * * **
1859938 ACAAGTCGGTGGCACAGC-TTTCAAATCTT
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
** *
1859967 ACAAGTCCGTGGCATACC-TTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* **
1859996 ACAAGTTAATGGCACATTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1860025 ACAAATTGGTGGCAACACTTTCCAAAGCTCAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGC-C-C
* ** *
1860057 ACAAATCGGTGGC-CCC-TTTCTAAAACCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCC
* * * * *
1860085 ATAAGTCAGGGGCACCCTTTCCACAGCTCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-C-C
* *
1860116 ACAAGTTGGTGGCA-CCTTTGTCAAAGCTGGC
1 ACAAGTTAGTGGCACCCTTT-TCAAAGC--CC
* **
1860147 ACAAGTT-GACGGCACCC-AATCAAAGTCCAC
1 ACAAGTTAG-TGGCACCCTTTTCAAAG-CC-C
* * ** *
1860177 ACAAGTTGGTGGAACCCTAATCGAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1860206 ATAAGTTAGTGGTACCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
***
1860235 ACAACCCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1860265 ACAAGTTAGTGGCACACTTTTGAAAAG-CC
1 ACAAGTTAGTGGCACCCTTTT-CAAAGCCC
* * * *
1860294 ACAAGTCAATGGCACCTCTTTTCAATGCCT
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
** *
1860324 ACAAGTT-GTTGGCATCCCTTCACAAAGCTC
1 ACAAGTTAG-TGGCA-CCCTTTTCAAAGCCC
* *
1860354 AGAAGTCAGTGGCACCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1860382 ATAAATCAGTGGCACCCTTTT-AAAGCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1860410 ATAAATTAGTGGCACCCTATT-AAAGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1860438 ATAAGTTAGTGGCACCCTTTTTCAAAACCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCC
* * **
1860468 AGAAGTCT-GTGGCACCC-TTCCAAAGCAT
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCC
* *
1860496 AAAAGTTAGTGGCACCCTTTT-AAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1860524 ACAAGTTAGTGGCACCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * *
1860553 ACAAGTCAATGGCACACTTTTCAAAACCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1860582 ACAAGTCAGTGGCACCCTTTTTAGAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** * *
1860611 ACAAGTCGGTGGCAACTCTTTTCAAAGCGC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC
* *
1860641 ATAAGTTAGTGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* ** **
1860669 ACAAGTCAACGGCA-CC-TTTCAAAGTGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * **
1860696 ACAAGTCAGCGACACACTTTTCAAAGCTT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1860725 ACAAGTTAGTGGCTCACTTTTCAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1860754 ACAAG-TCGATGGCACCCCTTTCCAAAGCCC
1 ACAAGTTAG-TGGCA-CCCTTTTCAAAGCCC
* * * *
1860784 ATAAGTCAAT--CACACTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1860811 AAAAG-CAGTGGCACTTCC-TTTCAATGCCT
1 ACAAGTTAGTGGCAC--CCTTTTCAAAGCCC
* * **
1860840 ACAAGTCAGTGGCATCCCTTTTCTAAGATC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1860870 ACAAGTCAATGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * *
1860898 ATAAGATAGTTGCA-CCGTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1860926 ATAAGTCAGTGGCACCCATTTTTAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCC
* *
1860956 ATAAGTCAGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * * **
1860986 ATAAGTCAGGGGCACCC-TCCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1861014 ACAAGTCAATGGCACCCTTTT-AAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * ** **
1861042 ACAAGTCAGCGGCACAGTTTTCAAAGTGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1861071 ACAAGTTAGTGGCACTCC-TTTCAAAGCCT
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
* * ** *
1861100 ATAAGTTAATGGCATACTTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * **
1861129 ACAAGTCAATGGCACATTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1861158 ACAAGTTGGTGGCAACTCTTCTCAAAGCCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC
* * * *
1861188 ACACA---AATCAGCAGCCCTTTTCTAAAACCT
1 ACA-AGTTAGT-GGCA-CCCTTTTC-AAAGCCC
* *
1861218 ACAAGTTAGGGGCACCCTTTCCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* ** *
1861249 ACAAGTTGGTGG-TTCCTTTGTCAAATCCC
1 ACAAGTTAGTGGCACCCTTT-TCAAAGCCC
* * * **
1861278 GC-A-TAAGTTGGCAGCACTCAATCAAAGCCCAC
1 ACAAGTTAG-TGGCA-CCCT-TTTCAAAG-CC-C
* * ** *
1861310 ACAAGTTGGTGGCACCGTAATCGAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
1861339 ACAAGTTAGTGGCACCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1861367 ACAAGTTGGTGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
*
1861397 ACAAGTCAGTGG
1 ACAAGTTAGTGG
1861409 ACAAGTTAGC
Statistics
Matches: 3639, Mismatches: 844, Indels: 538
0.72 0.17 0.11
Matches are distributed among these distances:
25 2 0.00
26 29 0.01
27 103 0.03
28 805 0.22
29 1021 0.28
30 1134 0.31
31 369 0.10
32 140 0.04
33 16 0.00
34 4 0.00
35 1 0.00
37 1 0.00
39 1 0.00
40 1 0.00
41 1 0.00
42 3 0.00
43 2 0.00
44 1 0.00
45 3 0.00
46 2 0.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.22
Consensus pattern (29 bp):
ACAAGTTAGTGGCACCCTTTTCAAAGCCC
Found at i:1861959 original size:30 final size:29
Alignment explanation
Indices: 1861409--1865594 Score: 2182
Period size: 30 Copynumber: 142.9 Consensus size: 29
1861399 AAGTCAGTGG
* * *
1861409 ACAAGTTAGCGACACCCCTTTTCAAAGCCT
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1861439 ACAAGTTAGTGACACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1861467 CCATGTCTA-TGGC-CCCCTTCCAAAGCCC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCC
* * **
1861495 CCAAGTTAGTGCCACTTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** * *
1861524 ACAAGTCGGTGTCAACTCTTTTCAAAGCCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC
* * *
1861554 ATACAA--TCGATGGCACCC-ATCCAAAG--C
1 --ACAAGTTAG-TGGCACCCTTTTCAAAGCCC
* * *
1861581 ACAAGTTGGTGGCATTTCCTTCT-AAAGCCC
1 ACAAGTTAGTGGCA--CCCTTTTCAAAGCCC
** *
1861611 AAACAAGCTT-GTACCAACTCTTTTCAAAGCCC
1 --ACAAG-TTAGTGGC-ACCCTTTTCAAAGCCC
** * * * *
1861643 ACACAAATCGATGG-GCCC-TTCCAAAACCC
1 ACA-AGTTAG-TGGCACCCTTTTCAAAGCCC
* *
1861672 ACAAGTCAAG-GGCACCCTTTCCAAAGCCTAC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCC--C
* * **
1861703 AGAAGTTAGTGGCACCATTGGCAAAGCCCGC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* *** **
1861734 ACAAGTTGGCAACACCC-AGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
** * ** *
1861764 ACAAGTCGGTGGCTCCCTAATCAATGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1861793 AAAAGCTAGTGGCATCCCCTTTT-AAAGCTC
1 ACAAGTTAGTGGCA--CCCTTTTCAAAGCCC
* * * * *
1861823 ACAAGTCAATGGCACCC-ATCCAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1861851 ACAAGTTAGTGGCACCC-TTTCAAATCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1861879 ATAAGTTAGTGGCACCCATTTT-AAAGCCG
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCC
** * ** *
1861908 ACAAGCCAATGAAATCTCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* **
1861938 ACAAGATAGTGGCACCGCTTTTCAAAGCTA
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* **
1861968 ACAAGTAAGTGGCACATTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * **
1861997 ATAAGTCAGTGGCACCTCTTTTCGATGCTT
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* * * * * *
1862027 ATAAGTCAATGGCATCCCTTCTCGAAGCTC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1862057 ATAAGTCAGTGGCACCC-TTCCAAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCC
* *
1862086 ACAAGTTAGCGGCACCC-TTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
1862114 ACAAGTTAGTGGCA-CCTCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCT-TTTCAAAGCCC
* * * * *
1862143 ACAAGCTAGTGGCACCTTTTTTAAGGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* **
1862172 ACAAGTCAGTGGCACCCCTTTTCAAAGCAA
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1862202 ACAAGTCAGTGACACACTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1862231 ACAAGTTAGTGGTACCTCTTTTCAAAGCCA
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* * *
1862261 ACAAGTCAATGGCACCCCTTTTCAATGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1862291 ACAAGTTAGTGGCACCC-TTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1862319 ACAAGTTAGTGGCCCCCCTTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * ** *
1862348 CCTAGTCAGCAGCACCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1862377 ATAAGTTAGTGGCAACTCTTTTCAAAGCCTAT
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCC--C
* * ** *
1862409 ACAAATTGGTGGCA-CCAATCCAAAG--C
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * ** ** *
1862435 ATAAGTTTGCGGCATTC-AGTAAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* ** **
1862465 ACAAGTTGGTGGGTCCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* **
1862494 ATAAGTTAGTGGCATCCTCTTTT-ATGGCCC
1 ACAAGTTAGTGGCA-CC-CTTTTCAAAGCCC
* * *
1862524 ATAAGTCAGTGGCACCCCTTTCAAAAG-CC
1 ACAAGTTAGTGGCACCCTTTTC-AAAGCCC
* * * *
1862553 ATAAGTTAGTGGAACACTATTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1862582 ATAAGTCAATAGG-ACCTTTTTTCAAAGCCC
1 ACAAGTTAGT-GGCACC-CTTTTCAAAGCCC
* *
1862612 ACAAGTTAGTGGCACCCCTTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1862641 ACAAGTTAGTGGCACCCTTTT-GAGGACA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1862669 ACAAGTAAGTGGCATCCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1862698 AAAAGTTAGTGGCACACTTTTCGAAGCGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-C-C
* ** * * *
1862729 ACAAATCGGTGGCACCC-TTCCAAAACTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1862757 ACAAGTCAG-GGCACTCTTTCCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
*
1862787 ACAAGTTGGTGGCA-CCTTTGTCAAAGCCCGC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-C
* * * * **
1862818 ACAAATTGGCGGTA--CTAAATCAAAGCCC
1 ACAAGTTAGTGGCACCCT-TTTCAAAGCCC
** *
1862846 ACACTTGTAGGTGGCA-CCTTAATCAAAGCCC
1 ACAAGT-TA-GTGGCACCCTT-TTCAAAGCCC
*
1862877 ACAAGTTAGTGGCACCC-TTTCAATGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1862905 ACAAGCTAGTGGCACCCCTTTTTAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * * *
1862935 ACAGGCTAGTGGCACACTTTTCAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * ***
1862964 ACAAGTCAGTGGCACCTTCTTTT-AATGTGT
1 ACAAGTTAGTGGCACC--CTTTTCAAAGCCC
* * * * *
1862994 ACAAGTCAATGGTATCCCTTTGCAAAGCTC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1863024 ACAAGTCAGTGGTACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* ** * **
1863052 ACAGGCGAGTGGCACTCTCCT-AAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1863080 ACAAGTCAGTTGC-TCCTTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1863108 ATAAGTCAGTGGCACTCATTTTCAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
*
1863138 ACAAGTTAGTGGCAACCATTTTCAAAGCCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC
* * * *
1863168 ATAAG-CAGTGGCA-CCTTTCCGAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** * *
1863195 ACAAGTCCGTGGCACAC-TTTCAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * **
1863223 ACAAGTCAGAGGCACTTTTTTTCAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
* * * *
1863253 ATAAGTTAGTGGCACACTCTTCAAAGCCG
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1863282 AAAAGTCAGTGGCAACTCTTTTCAAAGCCCAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAG-CC-C
* * * * *
1863314 ACAAATTGGAGGCACCC-TTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1863342 ACTAGTTAGTCGG-ACACTTTCCAAAGCCCAC
1 ACAAGTTAGT-GGCACCCTTTTCAAAG-CC-C
*
1863373 ACAAGTTGGTGGCA-CCTTTGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTT-TCAAAG-CC-C
* * *
1863404 ACAAGTTGGCGGCACCC-TATCAAAGCACAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-C-C
* **
1863434 ACAAGTTGGTGGCACCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * * *
1863463 AAAAGTCAATGCCATCCCCTTTCAAAGCGC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1863493 ACAAGTCAGTGGCATCCC-TTTCAAAGCCA
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * * * *
1863522 ATAAGTCAGTGACACACTTTTCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1863551 ACAAGTCAGTGGCA-TCTTTGTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTT-TCAAAGCCC
* *
1863580 ACAAGTTGGTGGCACCCTTTT-AAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
1863608 ACAAGTTAGTGGCACCCCTTTT-AAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
*
1863637 ACAAGTAAGTGGCACACC-TTTCAAAGCCC
1 ACAAGTTAGTGGCAC-CCTTTTCAAAGCCC
* *
1863666 ACAAGTTAGTGGCACCCTATTCAAAGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1863695 ACAAG-TCGATGGCAACTCTTTTCAAAGCTCAA
1 ACAAGTTAG-TGGC-ACCCTTTTCAAAGC-C-C
* * * * *
1863727 ACAAATTGGTGGCA-CCTTTCCAAAACTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1863755 ATAAG-TCGAGGCACCCTTTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1863783 ACATAAGTTAGTGGCACCTTTGTTAAAACCCGC
1 AC--AAGTTAGTGGCACCCTT-TTCAAAGCC-C
**
1863816 ACAAG-T--TGGCAACACCTAATCAAAGCCCAC
1 ACAAGTTAGTGGC-AC-CCTTTTCAAAG-CC-C
* ** * *
1863846 ACAAGTTGGTGGCACCCTAATCAAAACTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1863875 ACATGTTAGTGGCTCTC-TTTCAATGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* ** * *
1863903 ATAAACTAGTGGCACCCCTTTCCAAAACCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1863933 A-AAGTCAATGGCACACTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1863961 ACAAGTTAGTGGCACCTCCTTTCAATGCCT
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
1863991 ACAAGTTAGTGGCATCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1864021 ACAAGTCAATGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1864049 ACAAGTCAGGGGCACCC-TCTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1864077 ACAAGTTAGTTGCACCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1864105 ATAAGTTAGTGGCACCCATTTTCAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCC
* *
1864135 ACAAGTCAATGGCACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1864165 AAAAAG-CAGTGGCACCC-TTCCAAA-CCC
1 -ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1864192 ATAAGTCCA-TGGCACCCTTTT-AAAGCCC
1 ACAAGT-TAGTGGCACCCTTTTCAAAGCCC
* * * **
1864220 ATAAGTCAGCGGCACATTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
** * *
1864249 ACAAGTTAGTGGCACATTTTTGAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1864278 ACAAGTCAAG-GGCACCCCTTTTCAAAGCCT
1 ACAAGT-TAGTGGCA-CCCTTTTCAAAGCCC
* * *
1864308 ACAAGTCAGTGGCACACTTTTCAAAGCCG
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* **
1864337 ACAAGTCAGTGGCAACTATTTTCAAAGCCC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGCCC
* * *
1864367 ACGCAAATT-GCTGGCA-CC-TCTCAAAACCC
1 A--CAAGTTAG-TGGCACCCTTTTCAAAGCCC
*
1864396 ACAAGTCAGTGGCACCCTTTTCAAAGCCTAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCC--C
* * *
1864427 ACAAGTTGGTGGCA-CCTTTGTTAAAGCCGT
1 ACAAGTTAGTGGCACCCTTT-TCAAAGCC-C
* * * **
1864457 ATAAGTTGGCGGCACCCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1864486 TCAAGTTAGTGGCACCCCTTACAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1864515 ATAAGTTAGTGGCACCCCTTTCAAGGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* ** * *
1864544 ACAAGTCAGTGGCATACTTGTAAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1864573 ACAAGTTAGTGGCACCTTTTTCAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1864602 ACAAGTTGGTGGCAACTCTTTTCAAAGCTCAA
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGC-C-C
* ** * * *
1864634 ACAAATCGGTGGC-TCCTTTCCAAAACCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1864662 A-AAGTTAAG-GGCACCCTTTCCAAAGCCC
1 ACAAGTT-AGTGGCACCCTTTTCAAAGCCC
*
1864690 ACAAAAGTTTGTGGCA-CCTTTGTCAAAGCCTGC
1 AC--AAGTTAGTGGCACCCTTT-TCAAAGCC--C
* * * **
1864723 AAAAGTTGGTGGCAACC-AGTCAAAGCCCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG-CC-C
* * ** * *
1864753 ACAAGTTGGTGCCACCCTAATCGAAGCCA
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1864782 ACAAGTTAGTGGCACCCCTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1864811 ACAAGTTAGCGACACCCCTTTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1864841 ACAAGTTAGTAGTACCCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCC
* * ***
1864871 ATAAGTTTGTGGCAGAATTTTCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
*
1864900 ACAAGTCT-GTGGCACCTCTTTTCAAAGCCT
1 ACAAGT-TAGTGGCACC-CTTTTCAAAGCCC
*
1864930 ACAAGTGAGTGGCACCCTTTTTCAAAGCCC
1 ACAAGTTAGTGGCACCC-TTTTCAAAGCCC
* *
1864960 ACAAGTTAGTGGCACCC-TTCCAAAGCTC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1864988 ACAGGTTAGTGGC-CCCCTTCCAAAGCACC
1 ACAAGTTAGTGGCACCCTTTTCAAAGC-CC
* * * *
1865017 -TAAGTTAGTGGCATCTTTTTCAAAGCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * *
1865045 ATAAGTCAGTGGCAACTCTTTTCGAAGCTTAC
1 ACAAGTTAGTGGC-ACCCTTTTCAAAGC--CC
* ** * *
1865077 ACAAATCGGTGGC-CCCTTTTCAAAACAC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * *
1865105 ACAAGTGA-TGGCA-CTTTTTCCAACGACTAC
1 ACAAGTTAGTGGCACCCTTTT-CAAAG-C-CC
* * *
1865135 ACAAGTAAGTGGCA-CCTTTGGCAAACCCCGC
1 ACAAGTTAGTGGCACCCTTT-TCAAA-GCC-C
** *
1865166 ACAAGTT-G-GG-ACCCAGTT-AAAGTTCAC
1 ACAAGTTAGTGGCACCCTTTTCAAAG--CCC
* * **
1865193 ACAAGTTGGTGGCACGCTAATCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
1865222 ACAAGTTAGTGGCATCCCCTTTT-AAAGCCC
1 ACAAGTTAGTGGCA--CCCTTTTCAAAGCCC
* *
1865252 ACAAGTTAATGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * *
1865280 ACAAGTTAGTGGCA-CCATTTGAAAGCCT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1865308 ACAACTCAGTGGCATCCC-TTTCAAAGCCC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* * *
1865337 ATAAGCTAGTGGCCCCGCTTTTCAAAGCCC
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* * *
1865367 ACAAGTTAGTGGCACACTTTTCAATGGCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * *
1865396 ACAAGTAAATGGCACCTCTTTTTAATGCCT
1 ACAAGTTAGTGGCACC-CTTTTCAAAGCCC
* * *
1865426 ACAAGTCAGTGGCATCCCTTCTCAAAGCTC
1 ACAAGTTAGTGGCA-CCCTTTTCAAAGCCC
* *
1865456 ACAAGTCAGTGGCACCC-TTCCAAAGCCC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1865484 ACAAGTTAGTGGCACCC-ATTCAAAGCCG
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * * **
1865512 ATAAGTTAGTGGCACTCGTTT-GAAGCGT
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* * * **
1865540 AAAAGTCAGTGGCACCCTTTT-AAGGTGC
1 ACAAGTTAGTGGCACCCTTTTCAAAGCCC
* *
1865568 ATAAGTCAGTGGCACCCCTTTTCAAAG
1 ACAAGTTAGTGGCA-CCCTTTTCAAAG
1865595 TGTCGTAACG
Statistics
Matches: 3191, Mismatches: 746, Indels: 438
0.73 0.17 0.10
Matches are distributed among these distances:
25 4 0.00
26 24 0.01
27 102 0.03
28 683 0.21
29 958 0.30
30 1017 0.32
31 298 0.09
32 91 0.03
33 14 0.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (29 bp):
ACAAGTTAGTGGCACCCTTTTCAAAGCCC
Found at i:1862812 original size:31 final size:31
Alignment explanation
Indices: 1862777--1862892 Score: 112
Period size: 31 Copynumber: 3.8 Consensus size: 31
1862767 GCACTCTTTC
**
1862777 CAAAGCCCACACAAGTTGGTGGCACCTTTGT
1 CAAAGCCCACACAAGTTGGTGGCACCTTAAT
* * * * *
1862808 CAAAGCCCGCACAAATTGGCGGTA-CTAAAT
1 CAAAGCCCACACAAGTTGGTGGCACCTTAAT
** *
1862838 CAAAGCCCACACTTGTAGGTGGCACCTTAAT
1 CAAAGCCCACACAAGTTGGTGGCACCTTAAT
*
1862869 CAAAG-CC-CACAAGTTAGTGGCACC
1 CAAAGCCCACACAAGTTGGTGGCACC
1862893 CTTTCAATGC
Statistics
Matches: 65, Mismatches: 19, Indels: 4
0.74 0.22 0.05
Matches are distributed among these distances:
29 13 0.20
30 22 0.34
31 30 0.46
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (31 bp):
CAAAGCCCACACAAGTTGGTGGCACCTTAAT
Found at i:1865537 original size:28 final size:28
Alignment explanation
Indices: 1865458--1865556 Score: 76
Period size: 28 Copynumber: 3.5 Consensus size: 28
1865448 CAAAGCTCAC
* ** *
1865458 AAGTCAGTGGCACCC-TTCCAAAGCCCAC
1 AAGTTAGTGGCACCCATT-CAAAGCGTAA
*
1865486 AAGTTAGTGGCACCCATTCAAAGCCG-AT
1 AAGTTAGTGGCACCCATTCAAAG-CGTAA
* * **
1865514 AAGTTAGTGGCACTCGTTTGAAGCGTAA
1 AAGTTAGTGGCACCCATTCAAAGCGTAA
*
1865542 AAGTCAGTGGCACCC
1 AAGTTAGTGGCACCC
1865557 TTTTAAGGTG
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 2 0.03
28 53 0.91
29 3 0.05
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.20
Consensus pattern (28 bp):
AAGTTAGTGGCACCCATTCAAAGCGTAA
Found at i:1868846 original size:19 final size:18
Alignment explanation
Indices: 1868822--1868906 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 18
1868812 AGCAATACAT
1868822 TGTATCGATACAACATTTA
1 TGTATCGATACAACA-TTA
1868841 TGTATCGAT---ACA-T-
1 TGTATCGATACAACATTA
*
1868854 TGTATCGATACAAAACTTA
1 TGTATCGATACAACA-TTA
1868873 TGTATCGATACATTTACTATT-
1 TGTATCGATACA---AC-ATTA
1868894 TGTATCGATACAA
1 TGTATCGATACAA
1868907 ATTGTTGAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 21
0.70 0.03 0.27
Matches are distributed among these distances:
13 9 0.17
14 1 0.02
16 5 0.09
18 2 0.04
19 21 0.39
21 12 0.22
22 3 0.06
23 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
TGTATCGATACAACATTA
Found at i:1868857 original size:32 final size:32
Alignment explanation
Indices: 1868816--1868886 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
1868806 CTTTGTAGCA
* *
1868816 ATACATTGTATCGATACAACATTTATGTATCG
1 ATACATTGTATCGATACAAAACTTATGTATCG
1868848 ATACATTGTATCGATACAAAACTTATGTATCG
1 ATACATTGTATCGATACAAAACTTATGTATCG
1868880 ATACATT
1 ATACATT
1868887 TACTATTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (32 bp):
ATACATTGTATCGATACAAAACTTATGTATCG
Found at i:1868859 original size:13 final size:13
Alignment explanation
Indices: 1868841--1868865 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1868831 ACAACATTTA
1868841 TGTATCGATACAT
1 TGTATCGATACAT
1868854 TGTATCGATACA
1 TGTATCGATACA
1868866 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1869312 original size:57 final size:57
Alignment explanation
Indices: 1869201--1873883 Score: 1055
Period size: 59 Copynumber: 80.0 Consensus size: 57
1869191 ATGGCACCTT
* *
1869201 CTTTTAAAGCCCACAAGTCAGTGGCA-CCC-TTCTAAAGCCCACAAGTTAGTGGCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCCACAAGTTAGGGGCACA
* * * *
1869257 CTTTTAAAGCCAATAAGTCAATGGCACCCCTTTCAAAGCCCATAAGTTAGGGGCACA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * *
1869314 CTTTTCAAAACCCACAAGTCAGTAGCACCCTTTTCAAAGCCCACAAG-TCGATGGCA-A
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAG-GGGCACA
* * * * ** *
1869371 TTTATTTCAAAGCCCATAAATCAGTGGCA-CCC-TTCTAAAGCCCACAAGTCAATGGCACC
1 -CT-TTT-AAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCCACAAGTTAGGGGCACA
* * ** * * ** *
1869430 CTTTCAAAGCCCACAAGTGAACGGCACACTTTTCAAAGCTTACAAGTTAGTGGCACA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * ** * *** * **
1869487 CTTTTCAAAGCACACAACTTGGTAGCACTTTTTTCTAAAGCCCACAAGTCAATGGCACA
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCCACAAGTTAGGGGCACA
* * * * * * * *
1869546 CTTTCCAAAGCCCACAAGTCAGTGGCACCTCCTTTCAATGCCTATAAGTCAGTGACATCTC
1 CTTT-TAAAGCCCACAAGTCAGTGGCACC-CCTTTCAAAGCCCACAAGTTAGGGGCA-C-A
* * * * ** * ** *
1869607 CTTTCAAAGCTCGCAAGTTAGTGGCA-TTC-TTCTAAAGCCCACAAGTCAATGGCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCCACAAGTTAGGGGCACA
** * * * * * * * *
1869663 CTCCTAAAGCCCATAAGTTAGT--CACACCATTTGAAAGCCCATAAGTCAGTGGCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCAC-CCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * *
1869719 CATTTTCAAAGCACACAAGTCAGTGGCACCACTTTTCAAAGCCCATAAGTTAGGGGTACC
1 C-TTTT-AAAGCCCACAAGTCAGTGGCACC-CCTTTCAAAGCCCACAAGTTAGGGGCACA
** * * * * * ** *
1869779 CTTCCAAAACCCACAAGTCAATGGCA-CGCTTTTAAAGCCCACAAGTCAACGGCAAA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * * *
1869835 CTTTTCAATGCCCAGAAGTTAATGGCACACTTTTCAAGGCCCACAAG-TCGGTGGCACCC
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGG-GGCA-CA
* * ** * * * * *
1869894 CTTTTCAAAGCCCACAAGTCAGTAGCATCGTTTTCGAAGCCGACAAGTTAGTGACAAA
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * *
1869952 TCTTTTCAAAGACCACACAAAAT-GGTGGC-GCCCTTCCAAAACCCACACA-TTAGTGGCACC
1 -CTTTT-AAAG-CC-CAC-AAGTCAGTGGCACCCCTTTCAAAGCCCACA-AGTTAGGGGCACA
* ** * * *
1870012 CTTTCCAAAGCCCACACAAGTTGGTGGCA-CCTTTGTCAAAGCCCGCACAA-TTTGGCGGCACC
1 CTTT-TAAAG-CC-CACAAGTCAGTGGCACCCCTT-TCAAAG-CC-CACAAGTTAGG-GGCACA
* * * ** *
1870074 CTATTAAAGCCCACACAAGT-TGCTGGCA--CCTTAATCAAAGCCCAGAAGTTAATGGCATCCC
1 CTTTTAAAG-CC-CACAAGTCAG-TGGCACCCCTT--TCAAAGCCCACAAGTTAGGGGCA--CA
* * * * * *
1870135 CTTTCAAAGCCCACAAGTTAGTGGCACCTCTTTCAAAGCCCACAAGTCAGTGGCACCC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * * *
1870193 CTTTCAAAGCCCACAAGTCAGTGGCACACTTTTCAAAGCCCAAAAGTCAGAGGCAC-
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* ** * * * * *
1870249 CTTTTCCAAAGGCCC-CTAGTTGGTGGCAACTCTTTACAAAGCTCACACAA-ATCGATGGC-C-
1 CTTTT--AAA-GCCCACAAGTCAGTGGCACCCCTTT-CAAAGC-C-CACAAGTTAG-GGGCACA
* * * *
1870309 TTTTTCCAAAACCCATAAGTCAGGGGCA-CCCTTTCCAAAGCCCACACAAGTT-GGTGGCAC-
1 CTTTT--AAAGCCCACAAGTCAGTGGCACCCCTTT-CAAAG-CC-CACAAGTTAGG-GGCACA
* * * * *
1870369 TTTTGTCAAAGCTCGCATAAGT---TGGCAGCACCTAGTCAAAGCCCACACAAGTTAGTGGCAC-
1 CTTT-T-AAAGC-C-CACAAGTCAGTGGCA-CCCCT-TTCAAAG-CC-CACAAGTTAGGGGCACA
** * * * * **
1870430 CTTAATCGAAGCTCACAAGTTAGTGGCA-CCTTTTCAAAGCCCACAAGTTAGTGGTGCA
1 CTT--TTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * *
1870488 TTTTTCGAAGCCCATAAGTTAGTGGCACCACTTGTCAAAGCCCACAAGTTAGTGGCACC
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTT-TCAAAGCCCACAAGTTAGGGGCACA
** * * **
1870547 CTTCCAAAGCCCACAGGGT-AGTGGC-CCCCTTCCAAAGCCC-CAAGTTAGTAGCAC-
1 CTTTTAAAGCCCACA-AGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * ** * *
1870601 CTTTTTCAAAACCCACAAGTCGGTGGCAACTCTTTTCAATG-CCATAAAATCGGTGGCACC
1 C-TTTT-AAAGCCCACAAGTCAGTGGC-ACCCCTTTCAAAGCCCACAAGTTAGG-GGCACA
* ** * * * * * *
1870661 CATCCATAG--CACAAGTTAGTGGCATCTCTTTCTAAAGCCCATACAAGCTA-GGACTA-A
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCC--ACAAGTTAGGGGC-ACA
* * *
1870718 CTCTTTCAAAGCCTACACAAGTTAGTGGCA--CCTTTGGCAAACCCCGCACAAGTT-GGCAGCAC
1 CT-TTT-AAAGCC--CACAAGTCAGTGGCACCCCTTT--CAAA-GCC-CACAAGTTAGG-GGCAC
*
1870780 C
57 A
** * * ** * * * *
1870781 CAGTCAAAGCCCACACAATTTGGTAGCA-CCCTAATCAAAGCCCACAAGTTAGTGGCAACCC
1 CTTTTAAAG-CC-CACAAGTCAGTGGCACCCCT-TTCAAAGCCCACAAGTTAGGGGC-A-CA
* * * * * * * * *
1870842 CTTTTAAAGCTCAAAAGTCAATGGCA-CCCTTCCAAATCCCATAAGTCAGTGGCACT
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * ** * *
1870898 GTTTCAAAACCCACATGTTAGTGGCACCCATTTCAAAGGCCACAAGCCAGTGGCACCC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* *** * * *
1870956 CTTTTCAAAGCCCACCAGTCAGTGGCACATTTTTCAAAGCCCACAAGTCAGTGGCACCT
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * * * *
1871015 CTTTTCAATGCCTACAAGTCAGTGGCATCCCTTCTCAAAGCTCACAAGTCAGTGGCACC
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTT-TCAAAGCCCACAAGTTAGGGGCACA
** * * * * * * ** *
1871074 CTTCCAAAGCCCACGAGTCAGTGGCA-CCCTTTTAAGGCGCATAAGTGATTGGCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * ** *
1871130 CTTTCAAAGCGCATAAGTCAGTGGCACCCCTTTTCAAAGCCCAAAAGTCAACGGCACCC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCC-TTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * * * * * *
1871189 CTTTTCATAGCTCGCAAGCCATTGCCA-CCC-TTCTAAAGCCCACAAGTCAGTGGCACT
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCCACAAGTTAGGGGCACA
*** * * ** ** * *
1871246 CTCCCAAAGCCCAGAAGTTAGTTACACCATTTTCAAAGCCCACAAGTCAGTGGCACA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * * ** *
1871303 CCTATTCAAAGCTCATAAGTCAGGGGCA-CCC-TCCTAAATCCCATAAGTCAACGGCACC
1 -CT-TTTAAAGCCCACAAGTCAGTGGCACCCCTTTC-AAAGCCCACAAGTTAGGGGCACA
* * * * * * *
1871361 CTTTCAAAGCCCACAAGTCAGCGGCACACTTTTCAATGCCCACAAGTTAGTGGCATA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * *
1871418 CTTTTCAAGGCCCACAAGTCGGTGGCATCACTTTTCAAAACCCACAAGTTAGTGGCACC
1 CTTTT-AAAGCCCACAAGTCAGTGGCA-CCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * *** ** *
1871477 CTTTTCAAAGCCGACAAGTCAATGGCAACTATTTTCAAAGCCCACACA-AAATGGTGGCACC
1 CTTTT-AAAGCCCACAAGTCAGTGGC-ACCCCTTTCAAAGCCCACA-AGTTA-GG-GGCACA
* * * * * *** *
1871538 CATCTAAAACCCACAAGTTAGGGGCACATTTTTCGAAGCTCGCACAAGTT-GGTGGCAC-
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGC-C-CACAAGTTAGG-GGCACA
* ** * * * *
1871596 CTTTGTCAAAGCCCGCATAAGTTGGCGGCA-CCCTATCGAAGCCCACGCAAGTT-GGTGGCACC
1 CTTT-T-AAAG-CC-CACAAGTCAGTGGCACCCCTTTCAAAGCCCA--CAAGTTAGG-GGCACA
* * * * * * * * *
1871658 CTAATCAAAGTCCACAAGTTAGTGGCACCCCTTTCAAAGCCCACATGTCAGTGGTACCC
1 CT-TTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * * * * * * **
1871717 CTTTCAAAACCCATAAGTCAGTGGCACACTTTTCAAAGCCCCCAAGTCAGTGACATT
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * ** ** * * * * * * *
1871774 TTTTTCGAAGCAAACAAGTTGGTGACAACACTTTTCAAAGCTCACACAA-ATCGGTAGCTCA
1 CTTTT-AAAGCCCACAAGTCAGTGGC-ACCCCTTTCAAAGC-C-CACAAGTTAGG-GGCACA
* * * * * *
1871835 -TTTCCAAAACCTATAAGACAGGGGCA-CCCTTTCCAAAGCCCACACAAGTT-GGTGGCAC-
1 CTTT-TAAAGCCCACAAGTCAGTGGCACCCCTTT-CAAAG-CC-CACAAGTTAGG-GGCACA
* * * ** *
1871893 CTTTGTCAAAGCCCGCACAGGTCGGCGGCA-CCCAATCAAAGCCCACACAAGTT-GGTGGCACC
1 CTTT-T-AAAG-CC-CACAAGTCAGTGGCACCCCTTTCAAAG-CC-CACAAGTTAGG-GGCACA
* * * * * ** *
1871955 CTAATCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGTCCACAAGTCA-TAGCACCC
1 CT-TTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * ** *
1872012 CTTTTCAAAGCCCACAAGTTAGTGCCACCCCTTTTCAAAGCCCATAACCTAGTGGCAC-
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCC-TTTCAAAGCCCACAAGTTAGGGGCACA
* * * *
1872070 CTATTTTCAAAGCCTACAAGTCAGCGGCACCCCTTTTCAAAGCCCACAAGTTAGTGGCACC
1 C--TTTT-AAAGCCCACAAGTCAGTGGCACCCC-TTTCAAAGCCCACAAGTTAGGGGCACA
** * * * * * *
1872131 CTTCCAAAGCCCACAGGTTAGTAGC-CCCCTTCCAAAGCCCCCAAGTTAGTGGCAC-
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * *
1872186 CTTTTCCAAAGCCCACAAGCCGGTGGCAACTCTTTTCAAAGCTCATACAA-ATCGATGGCA-A
1 CTTTT--AAAGCCCACAAGTCAGTGGC-ACCCCTTTCAAAGC-C-CACAAGTTAG-GGGCACA
* ** ** * * * * *** *
1872247 CCATCCAAAG--CACAAGTTGGTTGCATCTCC-TTCTAAAGCCCACCCAAGCTCGTACCAACT
1 -CTTTTAAAGCCCACAAGTCAGTGGCA-CCCCTTTC-AAAGCCCA--CAAGTTAGGGGC-ACA
* * * * * * * * * *
1872307 CTTTTCAAAGCCCACACA--AATTGGTAGCCCTCTTCTAAAACCAAGAAATCAGGGGCACC
1 CTTTT-AAAGCCCACA-AGTCAGTGGCACCCCT-TTC-AAAGCCCACAAGTTAGGGGCACA
* * * * * *
1872366 CTTTCCAAAGCCTACACAAGTTAGTGGCA--CCTTTGGTAAAGCCCGCCCAAGTT-GGCAGCACT
1 CTTT-TAAAGCC--CACAAGTCAGTGGCACCCCTTT--CAAAG-CC-CACAAGTTAGG-GGCACA
** * ** * * * * *
1872428 CAGTCAAAGCCCGTACAAGTTGGTGACA-CCCTAATCAAAGCCCATAAGTTAGTGGCATCC
1 CTTTTAAAGCCC--ACAAGTCAGTGGCACCCCT-TTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * * * *
1872488 CTTTTTAAAGCTCACAAGTCAATGGTA-CTCTTCCAAAGCCCACAAGTTAGTGGCGTCA
1 C-TTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGC-ACA
* * * * * *
1872546 -TTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTAAAGCCCACAAGCTAGTGGCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * * *
1872602 CTTTTTCAAAGGCCACCAGTTAGTGGCACACTTTTCAATG-CCACAAGTCAGTGGCACCT
1 C-TTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * ** * *
1872661 CTTTTCAATGCCTACAAGTCAGTGGCATCCCTTCTCAAAGCTAACAAGTCAGTGGCAC-
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTT-TCAAAGCCCACAAGTTAGGGGCACA
* ** * * *
1872719 C-TTTACAATGCCCACAAGTTAGTGGCA-CCCTTTCAAAGCCCGTAAGTCAGTGGCACC
1 CTTTTA-AA-GCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * **
1872776 CTTTTAAAGCGCATAAGTCAGTGGCACCCCTTTTTTCAGAGGCCACAAGTTAATGGCACCA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCC---TTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * * *
1872837 TTTTTTAAAGCCCACAAGTCAGTGGCA-CTCTTCCAAAGCCTACAAGTTAGTGGCACT
1 -CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * *
1872894 CTTTTAAAGCCAACAAGT-AGTGGCACCTCTTTCAAAGCCCACAAGTTAGTGGCACA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * ** *
1872950 CTTTTTAAAACCCACAAGTCAGTGGCACCCTTTTCAAAGCCCGTAAG-TCGGTGGCA-A
1 C-TTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGG-GGCACA
* * * * * * *** *
1873007 CTTTTTTCAAAGCCCATAAGTCAGCGGCA-ACCTTCCAAAGACCACAAGTCAATAGCACC
1 C--TTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* ** * *** * * * * * *
1873066 CCTTCGAAGCCCACTAGTCAACAGCACACTTTTCAAAGGCCTCAAGTTCGTGGCACA
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * *
1873123 CTTTTCAATGCCCATAAGTCGGTGGCACACTTTTCAAAGCCCACAAGTCT-GTGGCACA
1 CTTTT-AAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGT-TAGGGGCACA
** * * ** * * *
1873181 CCTTTCCGAAGCCCACAAGTGAATGGCA-TACTTTCCAAAGCCCACAAGTCAGTGGCACCTC
1 -CTTT-TAAAGCCCACAAGTCAGTGGCACCCCTTT-CAAAGCCCACAAGTTAGGGGCA-C-A
* ** * * ** * * *
1873242 CTTTTAATGCGTACAAGTCAGTGGCATCCCTTTTCAAAGCTCACAAGTCCGTGCCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCA-CCCCTTTCAAAGCCCACAAGTTAGGGGCACA
** ** * * *** *
1873300 CTTCCAAAGCCCACATTTTAGTGG---CTCTTTCCCAAAGCCCACAAGTTAGTTACACC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTT--CAAAGCCCACAAGTTAGGGGCACA
** * * * * *
1873356 CTTTCGAAGCCCATAAGTTAGTGGCACCCATTTTCAAAGCCCACAAGTTAGTGGCACC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCC-CTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * **
1873414 CGTTTTTAAAGCCCATAAGTCAGGGGCA-CCCTTCCAAAGCCCACAAGTCAACGGCAC-
1 C--TTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * *
1873471 CATTTCAAAGACCATAAGTTAGTGGCACACTTTTCAATGCCCACAAGTTAGTGGCACA
1 C-TTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * * * * * *
1873529 CTTTTTAAGGACCACAAATCGGTGGCACCCCTTTTCGAAGTCTACAAGTCAGTGGCACC
1 C-TTTTAAAGCCCACAAGTCAGTGGCACCCC-TTTCAAAGCCCACAAGTTAGGGGCACA
* * * * * ** *
1873588 CTTTTTAAAGTCGAGAAGTCAGTGGCAACTCTTTTCAAAGCCCACACA-AAATGGTGCAC-
1 C-TTTTAAAGCCCACAAGTCAGTGGC-ACCCCTTTCAAAGCCCACA-AGTTA-GGGGCACA
* * * * *
1873647 CTTTCCAAAACCCACAAGTCAATGGCACCCTTTTCAAAGCCTACATAAGTT-GGTGGCAC-
1 CTTT-TAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCC--CACAAGTTAGG-GGCACA
*
1873706 CTTTGTCAAAGCCCGCACAAGT---TGGCAGCACCTTGTCAAAGCCCACGCAAGTT-GGTGGCAC
1 CTTT-T-AAAG-CC-CACAAGTCAGTGGCA-CCCCTT-TCAAAGCCCA--CAAGTTAGG-GGCAC
*
1873767 C
57 A
* * * ** *
1873768 CTAATCAAAGCCCACAAGTCAGTGGCATCCCCTTTCAAAGCCCACAAGTCAATGGCACCC
1 CT-TTTAAAGCCCACAAGTCAGTGGCA-CCCCTTTCAAAGCCCACAAGTTAGGGGCA-CA
* * * * *
1873828 CTTTCAAAGCCCACAAGTCAATGGCACACTTTTCAAAGCCCACAAGTTAGTGGCAC
1 CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCAC
1873884 TTGTTTCAAA
Statistics
Matches: 3432, Mismatches: 914, Indels: 561
0.70 0.19 0.11
Matches are distributed among these distances:
54 7 0.00
55 32 0.01
56 441 0.13
57 381 0.11
58 813 0.24
59 865 0.25
60 415 0.12
61 299 0.09
62 151 0.04
63 27 0.01
64 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (57 bp):
CTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAGGGGCACA
Found at i:1869466 original size:173 final size:173
Alignment explanation
Indices: 1869206--1869574 Score: 481
Period size: 173 Copynumber: 2.1 Consensus size: 173
1869196 ACCTTCTTTT
* * * *
1869206 AAAGCCCACAAGTCAGTGGCACCCTTCTAAAGCCCACAAGTTAGTGGCACCCTTTTAAAGCCAAT
1 AAAGCCCACAAGTCAGTGGCACCCTTCTAAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCAAC
* * * * *
1869271 AAGTCAATGGCACCCCTTTCAAAGCCCATAAGTTAGGGGCACACTTTTCAAAACCCACAAGTCAG
66 AAGTCAACGGCACACCTTTCAAAGCCCACAAGTTAGGGGCACACTTTTCAAAACACACAACTCAG
* * *
1869336 TAGCACCCTTTTC-AAAGCCCACAAGTCGATGGCA-ATTTATTTC
131 TAGCACCCTTTTCTAAAGCCCACAAGTCAATGGCACA-CT-TTCC
* * *
1869379 AAAGCCCATAAATCAGTGGCACCCTTCTAAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCACCCTTCTAAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCAAC
* * ** * * **
1869444 AAGTGAACGGCACACTTTTCAAAGCTTACAAGTTAGTGGCACACTTTTCAAAGCACACAACTTGG
66 AAGTCAACGGCACACCTTTCAAAGCCCACAAGTTAGGGGCACACTTTTCAAAACACACAACTCAG
**
1869509 TAGCACTTTTTTCTAAAGCCCACAAGTCAATGGCACACTTTCC
131 TAGCACCCTTTTCTAAAGCCCACAAGTCAATGGCACACTTTCC
1869552 AAAGCCCACAAGTCAGTGGCACC
1 AAAGCCCACAAGTCAGTGGCACC
1869575 TCCTTTCAAT
Statistics
Matches: 167, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
173 145 0.87
174 21 0.13
175 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (173 bp):
AAAGCCCACAAGTCAGTGGCACCCTTCTAAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCAAC
AAGTCAACGGCACACCTTTCAAAGCCCACAAGTTAGGGGCACACTTTTCAAAACACACAACTCAG
TAGCACCCTTTTCTAAAGCCCACAAGTCAATGGCACACTTTCC
Found at i:1869739 original size:30 final size:29
Alignment explanation
Indices: 1869177--1874124 Score: 2628
Period size: 29 Copynumber: 168.8 Consensus size: 29
1869167 TGTCTACGCG
* * *
1869177 AAGCCCACGAGTTAATGGCACCTTCTTTT-A
1 AAGCCCACAAGTCAGTGGCACC--CTTTTCA
*
1869207 AAGCCCACAAGTCAGTGGCACCCTTCT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1869235 AAGCCCACAAGTTAGTGGCACCCTTTT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * *
1869263 AAGCCAATAAGTCAATGGCACCCCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * *
1869292 AAGCCCATAAGTTAGGGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1869321 AAACCCACAAGTCAGTAGCACCCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
***
1869350 AAGCCCACAAGTC-GATGGCAATTTATTTCA
1 AAGCCCACAAGTCAG-TGGCACCCT-TTTCA
* * *
1869380 AAGCCCATAAATCAGTGGCACCCTTCT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1869408 AAGCCCACAAGTCAATGGCACCC-TTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* ** *
1869436 AAGCCCACAAGTGAACGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** * *
1869465 AAGCTTACAAGTTAGTGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * ** * **
1869494 AAGCACACAACTTGGTAGCACTTTTTTCTA
1 AAGCCCACAAGTCAGTGGCACCCTTTTC-A
* * *
1869524 AAGCCCACAAGTCAATGGCACACTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1869553 AAGCCCACAAGTCAGTGGCACCTCCTTTCA
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
* * * *
1869583 ATGCCTATAAGTCAGTGACATCTCC-TTTCA
1 AAGCCCACAAGTCAGTGGCA-C-CCTTTTCA
* * * ** *
1869613 AAGCTCGCAAGTTAGTGGCATTCTTCT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* **
1869641 AAGCCCACAAGTCAATGGCACCCTCCT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * *
1869669 AAGCCCATAAGTTAGT--CACACCATTTGA
1 AAGCCCACAAGTCAGTGGCAC-CCTTTTCA
*
1869697 AAGCCCATAAGTCAGTGGCACCCATTTTCA
1 AAGCCCACAAGTCAGTGGCACCC-TTTTCA
*
1869727 AAGCACACAAGTCAGTGGCACCACTTTTCA
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
* * * * *
1869757 AAGCCCATAAGTTAGGGGTACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1869785 AAACCCACAAGTCAATGGCACGCTTTT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** **
1869813 AAGCCCACAAGTCAACGGCAAACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * *
1869842 ATGCCCAGAAGTTAATGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1869871 AGGCCCACAAGTCGGTGGCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* * * *
1869901 AAGCCCACAAGTCAGTAGCATCGTTTTCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * **
1869930 AAGCCGACAAGTTAGTGACAAATCTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * *
1869960 AAGACCACACAAAAT-GGTGGCGCCC-TTCCA
1 AAG-CC-CAC-AAGTCAGTGGCACCCTTTTCA
* * *
1869990 AAACCCACACA-TTAGTGGCACCCTTTCCA
1 AAGCCCACA-AGTCAGTGGCACCCTTTTCA
**
1870019 AAGCCCACACAAGTTGGTGGCA-CCTTTGTCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTT-TCA
* ** * *
1870050 AAGCCCGCACAATTTGGCGGCACCCTATT-A
1 AAG-CC-CACAAGTCAGTGGCACCCTTTTCA
* *
1870080 AAGCCCACACAAGT-TGCTGGCA-CCTTAATCA
1 AAG-CC-CACAAGTCAG-TGGCACCCTT-TTCA
* * * *
1870111 AAGCCCAGAAGTTAATGGCATCCCCTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
*
1870141 AAGCCCACAAGTTAGTGGCA-CCTCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCT-TTTCA
*
1870170 AAGCCCACAAGTCAGTGGCACCCCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1870199 AAGCCCACAAGTCAGTGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1870228 AAGCCCAAAAGTCAGAGGCA-CCTTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTT-CA
* ** * *
1870257 AAGGCCC-CTAGTTGGTGGCAACTCTTTACA
1 AA-GCCCACAAGTCAGTGGC-ACCCTTTTCA
* *
1870287 AAGCTCACACAAATC-GATGG--CCTTTTTCCA
1 AAGC-C-CACAAGTCAG-TGGCACCCTTTT-CA
* * * *
1870317 AAACCCATAAGTCAGGGGCACCCTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** *
1870346 AAGCCCACACAAGTTGGTGGCA-CTTTTGTCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTT-TCA
* **
1870377 AAGCTCGCATAAGT---TGGCAGCACCTAGTCA
1 AAGC-C-CACAAGTCAGTGGCA-C-CCTTTTCA
* * *
1870407 AAGCCCACACAAGTTAGTGGCA-CCTTAATCG
1 AAG-CC-CACAAGTCAGTGGCACCCTT-TTCA
* *
1870438 AAGCTCACAAGTTAGTGGCA-CCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* ** ** *
1870466 AAGCCCACAAGTTAGTGGTGCATTTTTCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1870495 AAGCCCATAAGTTAGTGGCACCACTTGTCA
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
* *
1870525 AAGCCCACAAGTTAGTGGCACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1870553 AAGCCCACAGGGT-AGTGGC-CCCCTTCCA
1 AAGCCCACA-AGTCAGTGGCACCCTTTTCA
* * *
1870581 AAGCCC-CAAGTTAGTAGCACCTTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1870609 AAACCCACAAGTCGGTGGCAACTCTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * * * *
1870639 ATG-CCATAAAATCGGTGGCACCC-ATCCA
1 AAGCCCA-CAAGTCAGTGGCACCCTTTTCA
* * *
1870667 TAG--CACAAGTTAGTGGCA-TCTCTTTCTA
1 AAGCCCACAAGTCAGTGGCACCCT-TTTC-A
* *
1870695 AAGCCCATACAAG-CTAG-GACTA-ACTCTTTCA
1 AAGCCC--ACAAGTC-AGTGGC-ACCCT-TTTCA
* *
1870726 AAGCCTACACAAGTTAGTGGCA-CCTTTGGCA
1 AAGCC--CACAAGTCAGTGGCACCCTTT-TCA
* ** ** **
1870757 AACCCCGCACAAGTTGGCAGCACCC-AGTCA
1 AA-GCC-CACAAGTCAGTGGCACCCTTTTCA
* ** * **
1870787 AAGCCCACACAATTTGGTAGCACCCTAATCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTTTCA
*
1870818 AAGCCCACAAGTTAGTGGCAACCCCTTTT-A
1 AAGCCCACAAGTCAGTGGC-A-CCCTTTTCA
* * * *
1870848 AAGCTCAAAAGTCAATGGCACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1870876 AATCCCATAAGTCAGTGGCA--CTGTTTCA
1 AAGCCCACAAGTCAGTGGCACCCT-TTTCA
* * * *
1870904 AAACCCACATGTTAGTGGCACCCATTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1870933 AAGGCCACAAGCCAGTGGCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* **
1870963 AAGCCCACCAGTCAGTGGCACATTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
1870992 AAGCCCACAAGTCAGTGGCACCTCTTTTCA
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
* * *
1871022 ATGCCTACAAGTCAGTGGCATCCCTTCTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* *
1871052 AAGCTCACAAGTCAGTGGCACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1871080 AAGCCCACGAGTCAGTGGCACCCTTTT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * *
1871108 AGGCGCATAAGTGATTGGCACCC-TTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1871136 AAGCGCATAAGTCAGTGGCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* **
1871166 AAGCCCAAAAGTCAACGGCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* * * * * * *
1871196 TAGCTCGCAAGCCATTGCCACCCTTCT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* **
1871224 AAGCCCACAAGTCAGTGGCACTC-TCCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * ** *
1871252 AAGCCCAGAAGTTAGTTACACCATTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1871281 AAGCCCACAAGTCAGTGGCACACCTATTCA
1 AAGCCCACAAGTCAGTGGCAC-CCTTTTCA
* * * **
1871311 AAGCTCATAAGTCAGGGGCACCCTCCT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * **
1871339 AATCCCATAAGTCAACGGCACCC-TTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1871367 AAGCCCACAAGTCAGCGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * **
1871396 ATGCCCACAAGTTAGTGGCATACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1871425 AGGCCCACAAGTCGGTGGCATCACTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* *
1871455 AAACCCACAAGTTAGTGGCACCCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * **
1871484 AAGCCGACAAGTCAATGGCAACTATTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * *
1871514 AAGCCCACACAAAAT-GGTGGCACCCATCT-A
1 AAG-CC-CAC-AAGTCAGTGGCACCCTTTTCA
* * * ** *
1871544 AAACCCACAAGTTAGGGGCACATTTTTCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
**
1871573 AAGCTCGCACAAGTTGGTGGCA-CCTTTGTCA
1 AAGC-C-CACAAGTCAGTGGCACCCTTT-TCA
* ** * * *
1871604 AAGCCCGCATAAGTTGGCGGCACCC-TATCG
1 AAG-CC-CACAAGTCAGTGGCACCCTTTTCA
** **
1871634 AAGCCCACGCAAGTTGGTGGCACCCTAATCA
1 AAGCCCA--CAAGTCAGTGGCACCCTTTTCA
* * *
1871665 AAGTCCACAAGTTAGTGGCACCCCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1871694 AAGCCCACATGTCAGTGGTACCCCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1871723 AAACCCATAAGTCAGTGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *** *
1871752 AAGCCCCCAAGTCAGTGACATTTTTTTCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** ** * *
1871781 AAGCAAACAAGTTGGTGACAACACTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * * * *
1871811 AAGCTCACACAAATCGGTAGC-TCATTTCCA
1 AAGC-C-CACAAGTCAGTGGCACCCTTTTCA
* * * * * *
1871841 AAACCTATAAGACAGGGGCACCCTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
**
1871870 AAGCCCACACAAGTTGGTGGCA-CCTTTGTCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTT-TCA
* * * **
1871901 AAGCCCGCACAGGTCGGCGGCACCC-AATCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTTTCA
** **
1871931 AAGCCCACACAAGTTGGTGGCACCCTAATCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTTTCA
1871962 AAGCCCACAAGTCAGTGGCA-CCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1871990 AAGTCCACAAGTCA-TAGCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* *
1872019 AAGCCCACAAGTTAGTGCCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* * *
1872049 AAGCCCATAA-CCTAGTGGCACCTATTTTCA
1 AAGCCCACAAGTC-AGTGGCACC-CTTTTCA
* *
1872079 AAGCCTACAAGTCAGCGGCACCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* *
1872109 AAGCCCACAAGTTAGTGGCACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * *
1872137 AAGCCCACAGGTTAGTAGC-CCCCTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1872165 AAGCCCCCAAGTTAGTGGCA-CCTTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTT-CA
* * *
1872194 AAGCCCACAAGCCGGTGGCAACTCTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * * *
1872224 AAGCTCATACAAATC-GATGGCAACC-ATCCA
1 AAGC-C-CACAAGTCAG-TGGCACCCTTTTCA
** * *
1872254 AAG--CACAAGTTGGTTGCATCTCCTTCT-A
1 AAGCCCACAAGTCAGTGGCA-C-CCTTTTCA
** *
1872282 AAGCCCACCCAAGCTC-GTACCAACTCTTTTCA
1 AAGCCCA--CAAG-TCAGTGGC-ACCCTTTTCA
* * * *
1872314 AAGCCCACACA--AATTGGTAGCCCTCTTCTA
1 AAGCCCACA-AGTCAGTGGCA-CCCTTTTC-A
* * * * * *
1872344 AAACCAAGAAATCAGGGGCACCCTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1872373 AAGCCTACACAAGTTAGTGGCA-CCTTTGGT-A
1 AAGCC--CACAAGTCAGTGGCACCCTTT--TCA
* * **
1872404 AAGCCCGCCCAAGT---TGGCAGCACTCAGTCA
1 AAG-CC-CACAAGTCAGTGGCA-CCCT-TTTCA
** * **
1872434 AAGCCCGTACAAGTTGGTGACACCCTAATCA
1 AAGCCC--ACAAGTCAGTGGCACCCTTTTCA
* * *
1872465 AAGCCCATAAGTTAGTGGCATCCCTTTTTA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* * * * *
1872495 AAGCTCACAAGTCAATGGTACTC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* ** *
1872523 AAGCCCACAAGTTAGTGGC-GTCATTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
1872551 AAGCCCACAAGTCAGTGGCACCTCTTTT-A
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
1872580 AAGCCCACAAG-CTAGTGGCACCCTTTTTCA
1 AAGCCCACAAGTC-AGTGGCACCC-TTTTCA
* * * *
1872610 AAGGCCACCAGTTAGTGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1872639 ATG-CCACAAGTCAGTGGCACCTCTTTTCA
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
* * *
1872668 ATGCCTACAAGTCAGTGGCATCCCTTCTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
** *
1872698 AAGCTAACAAGTCAGTGGCA-CCTTTACA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1872726 ATGCCCACAAGTTAGTGGCACCC-TTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
**
1872754 AAGCCCGTAAGTCAGTGGCACCCTTTT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1872782 AAGCGCATAAGTCAGTGGCACCCCTTTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCC--TTTTCA
* * * * * *
1872814 GAGGCCACAAGTTAATGGCACCATTTTTTA
1 AAGCCCACAAGTCAGTGGCACC-CTTTTCA
* *
1872844 AAGCCCACAAGTCAGTGGCACTC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1872872 AAGCCTACAAGTTAGTGGCACTCTTTT-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1872900 AAGCCAACAAGT-AGTGGCA-CCTCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCT-TTTCA
* * *
1872928 AAGCCCACAAGTTAGTGGCACACTTTTTA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1872957 AAACCCACAAGTCAGTGGCACCCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** * **
1872986 AAGCCCGTAAGTCGGTGGCAACTTTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * *
1873016 AAGCCCATAAGTCAGCGGCAACC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * *
1873044 AAGACCACAAGTCAATAGCACCC-CTTCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *** *
1873072 AAGCCCACTAGTCAACAGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1873101 AAGGCCTCAAGTTC-GTGGCACACTTTTCA
1 AAGCCCACAAG-TCAGTGGCACCCTTTTCA
* * * *
1873130 ATGCCCATAAGTCGGTGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * *
1873159 AAGCCCACAAGTCTGTGGCACACCTTTCCG
1 AAGCCCACAAGTCAGTGGCAC-CCTTTTCA
* * ** *
1873189 AAGCCCACAAGTGAATGGCATACTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
1873218 AAGCCCACAAGTCAGTGGCACCTCCTTTT-A
1 AAGCCCACAAGTCAGTGGCA-C-CCTTTTCA
* **
1873248 ATGCGTACAAGTCAGTGGCATCCCTTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* * * *
1873278 AAGCTCACAAGTCCGTGCCACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** * * *
1873306 AAGCCCACATTTTAGTGG--CTCTTTCCCA
1 AAGCCCACAAGTCAGTGGCACCCTTT-TCA
* ** *
1873334 AAGCCCACAAGTTAGTTACACCC-TTTCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1873362 AAGCCCATAAGTTAGTGGCACCCATTTTCA
1 AAGCCCACAAGTCAGTGGCACCC-TTTTCA
* *
1873392 AAGCCCACAAGTTAGTGGCACCCGTTTTTA
1 AAGCCCACAAGTCAGTGGCACCC-TTTTCA
* * *
1873422 AAGCCCATAAGTCAGGGGCACCC-TTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
** *
1873450 AAGCCCACAAGTCAACGGCA-CCATTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * *
1873478 AAGACCATAAGTTAGTGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * *
1873507 ATGCCCACAAGTTAGTGGCACACTTTTTA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * * *
1873536 AGGACCACAAATCGGTGGCACCCCTTTTCG
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* * *
1873566 AAGTCTACAAGTCAGTGGCACCCTTTTTA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* * * *
1873595 AAGTCGAGAAGTCAGTGGCAACTCTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * *
1873625 AAGCCCACACA--AAATGGTGCA-CCTTTCCA
1 AAGCCCACA-AGTCAGT-G-GCACCCTTTTCA
* *
1873654 AAACCCACAAGTCAATGGCACCCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* **
1873683 AAGCCTACATAAGTTGGTGGCA-CCTTTGTCA
1 AAGCC--CACAAGTCAGTGGCACCCTTT-TCA
*
1873714 AAGCCCGCACAAGT---TGGCAGCACCTTGTCA
1 AAG-CC-CACAAGTCAGTGGCA-C-CCTTTTCA
** **
1873744 AAGCCCACGCAAGTTGGTGGCACCCTAATCA
1 AAGCCCA--CAAGTCAGTGGCACCCTTTTCA
*
1873775 AAGCCCACAAGTCAGTGGCATCCCCTTTCA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCA
* *
1873805 AAGCCCACAAGTCAATGGCACCCCTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1873834 AAGCCCACAAGTCAATGGCACACTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
* *
1873863 AAGCCCACAAGTTAGTGGCA-CTTGTTTCA
1 AAGCCCACAAGTCAGTGGCACCCT-TTTCA
** * *
1873892 AAGCAAACAAGTCGGTGGCAACTCTTTTCA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTTCA
* * * ** *
1873922 AAGCTCATACAAATCGGTATC-CCCTTTCCA
1 AAGC-C-CACAAGTCAGTGGCACCCTTTTCA
* * * * *
1873952 AAACCTATAAGTTAAG-GGCACCCTTTCCA
1 AAGCCCACAAG-TCAGTGGCACCCTTTTCA
**
1873981 AAGCCCACACAAGTTGGTGGCA-CCTTTGTCA
1 AAG-CC-CACAAGTCAGTGGCACCCTTT-TCA
* **
1874012 AAGCCCGCACAAGTC-GACGGCACCC-AATCA
1 AAG-CC-CACAAGTCAG-TGGCACCCTTTTCA
** ** *
1874042 AAGCCCACCCAAGTTGGTGGCACCCTAATCT
1 AAGCCCA--CAAGTCAGTGGCACCCTTTTCA
*
1874073 AAGCCCACAAGTCAGTGGC-GCCTTTTCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCA
*
1874101 AAGCCCACAAGTCAGTAGCACCCT
1 AAGCCCACAAGTCAGTGGCACCCT
1874125 GTCGCAACGT
Statistics
Matches: 3787, Mismatches: 873, Indels: 517
0.73 0.17 0.10
Matches are distributed among these distances:
25 1 0.00
26 28 0.01
27 56 0.01
28 911 0.24
29 1172 0.31
30 1113 0.29
31 365 0.10
32 118 0.03
33 23 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCACCCTTTTCA
Found at i:1870822 original size:31 final size:30
Alignment explanation
Indices: 1870755--1870826 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
1870745 GCACCTTTGG
* * *
1870755 CAAACCCCGCACAAGTTGGCAGCACCCAGT
1 CAAAGCCCACACAAGTTGGCAGCACCCAAT
* *
1870785 CAAAGCCCACACAATTTGGTAGCACCCTAAT
1 CAAAGCCCACACAAGTTGGCAGCACCC-AAT
1870816 CAAAGCCCACA
1 CAAAGCCCACA
1870827 AGTTAGTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 23 0.64
31 13 0.36
ACGTcount: A:0.35, C:0.38, G:0.15, T:0.12
Consensus pattern (30 bp):
CAAAGCCCACACAAGTTGGCAGCACCCAAT
Found at i:1871163 original size:144 final size:143
Alignment explanation
Indices: 1869201--1873883 Score: 1198
Period size: 144 Copynumber: 32.0 Consensus size: 143
1869191 ATGGCACCTT
* * * *
1869201 CTTTTAAAGCCCACAAGTCAGTGGCACC-CTTCTAAAGCCCACAAGTTAGTGGCA-CCCTTTT-A
1 CTTTTAAAGCCCACAAGTTATTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCACCCCTTTTCA
* * * * * * ** * * *
1869263 AAGCCAATAAGTCAATGGCACCCCTT-TCAAAGCCCATAAGTTAGGGGCACACTTTTCAAAACCC
65 AAGCCCACAAGTCAGTGGCA-CCCTTCTCAAAGCTCACAAGTCAATGGCAC-CCTTCCAAAGCCC
* *
1869327 ACAAGTCAGTAGCACC
128 ACAAGTCAGTGGCACA
* ** * * *
1869343 CTTTTCAAAGCCCACAAGTCGA-TGGCAATTTATTTCAAAGCCCATAAATCAGTGGCA-CCCTTC
1 CTTTT-AAAGCCCACAAGT-TATTGGC-ACCT-TTTCAAAGCCCACAAGTCAGTGGCACCCCTTT
* * * * * *
1869406 T-AAAGCCCACAAGTCAATGGCACCCTT-TCAAAGCCCACAAGTGAACGGCACACTTTTCAAAGC
62 TCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCAC-CCTTCCAAAGC
** *
1869469 TTACAAGTTAGTGGCACA
126 CCACAAGTCAGTGGCACA
* * ** * * * * *
1869487 CTTTTCAAAGCACACAACTTGGTAGCACTTTTTTCTAAAGCCCACAAGTCAATGGCA-CACTTTC
1 CTTTT-AAAGCCCACAAGTTATTGGCAC-CTTTTC-AAAGCCCACAAGTCAGTGGCACCCCTTTT
* * * * *
1869551 CAAAGCCCACAAGTCAGTGGCACCTCCTT-TCAATGC-CTATAAGTCAGTGACATCTCCTTTCAA
63 CAAAGCCCACAAGTCAGTGGCA-C-CCTTCTCAAAGCTC-ACAAGTCAATGGCA-C-CCTTCCAA
* * * **
1869614 AGCTCGCAAGTTAGTGGCATT
123 AGCCCACAAGTCAGTGGCACA
* * * * * * * * * *
1869635 CTTCTAAAGCCCACAAGTCAATGGCACC-CTCCTAAAGCCCATAAGTTAGT--CACACCATTTGA
1 CTTTTAAAGCCCACAAGTTATTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCACCCCTTTTCA
* * * * *
1869697 AAGCCCATAAGTCAGTGGCACCCATTTTCAAAGCACACAAGTCAGTGGCACCACTTTTCAAAGCC
65 AAGCCCACAAGTCAGTGGCACCC-TTCTCAAAGCTCACAAGTCAATGGCACC-C-TTCCAAAGCC
* * * * *
1869762 CATAAGTTAGGGGTACC
127 CACAAGTCAGTGGCACA
** * * * ** **
1869779 CTTCCAAAACCCACAAGTCAATGGCACGCTTTT-AAAGCCCACAAGTCAACGGCA-AACTTTTCA
1 CTTTTAAAGCCCACAAGTTATTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCA
* * * * * * * * ** *
1869842 ATGCCCAGAAGTTAATGGCACACTTTTCAAGGCCCACAAGTCGGTGGCACCCCTTTTCAAAGCCC
65 AAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCA-CCC-TTCCAAAGCCC
*
1869907 ACAAGTCAGTAGCATC-
128 ACAAGTCAGTGGCA-CA
* * * * * * * * *
1869923 GTTTTCGAAGCCGACAAGTTAGTGACAAATCTTTTCAAAGACCACACAAAAT-GGTGGC-GCCC-
1 CTTTT-AAAGCCCACAAGTTATTGGC--ACCTTTTCAAAG-CC-CAC-AAGTCAGTGGCACCCCT
* * * * *** * *
1869985 TTCCAAAACCCACACA-TTAGTGGCACCCTT-TCCAAAGCCCACACAAGTTGGTGGCACCTTTGT
60 TTTCAAAGCCCACA-AGTCAGTGGCACCCTTCT-CAAAG--CTCACAAGTCAATGGCACCCTT-C
* ** * *
1870048 CAAAGCCCGCACAATTTGGCGGCACC
120 CAAAG-CC-CACAAGTCAGTGGCACA
* ** * * * *
1870074 CTATTAAAGCCCACACAAGTTGCTGGCACCTTAATCAAAGCCCAGAAGTTAATGGCATCCCC-TT
1 CTTTTAAAG-CC-CACAAGTTATTGGCACCTT-TTCAAAGCCCACAAGTCAGTGGCA-CCCCTTT
* * * *
1870138 TCAAAGCCCACAAGTTAGTGGCACCTCTT-TCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAG
62 TCAAAGCCCACAAGTCAGTGGCACC-CTTCTCAAAGCTCACAAGTCAATGGCA-CCCTTCCAAAG
1870202 CCCACAAGTCAGTGGCACA
125 CCCACAAGTCAGTGGCACA
* * ** * ** * * *
1870221 CTTTTCAAAGCCCAAAAGTCAGAGGCACCTTTTCCAAAGGCCC-CTAGTTGGTGGCAACTCTTTA
1 CTTTT-AAAGCCCACAAGTTATTGGCACCTTTT-CAAA-GCCCACAAGTCAGTGGCACCCCTTTT
* * * * * * **
1870285 CAAAGCTCACACAAATC-GATGG--CCTTTTTCCAAAACCCATAAGTCAGGGGCACCCTTTCCAA
63 CAAAGC-C-CACAAGTCAG-TGGCACCCTTCT-CAAAGCTCACAAGTCAATGGCACCC-TTCCAA
**
1870347 AGCCCACACAAGTTGGTGGCAC-
123 AG-CC-CACAAGTCAGTGGCACA
* * **** ** *
1870369 TTTTGTCAAAGCTCGCATAAGTTGGCAGCACCTAGTCAAAGCCCACACAAGTTAGTGGCA--CCT
1 CTTT-T-AAAGC-C-CACAAGTTATTGGCACCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCCT
* * * * * * * * ** * *
1870432 TAATCGAAGCTCACAAGTTAGTGGCA-CCTTTTCAAAGCCCACAAGTTAGTGGTGCA-TTTTTCG
60 T-TTCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAAT-G-GCACCCTTCCA
* *
1870495 AAGCCCATAAGTTAGTGGCACCA
122 AAGCCCACAAGTCAGTGGCA-CA
* * * * * *
1870518 CTTGTCAAAGCCCACAAGTTAGTGGCACCCTTCCAAAGCCCACAGGGT-AGTGGC-CCCC-TTCC
1 CTT-TTAAAGCCCACAAGTTATTGGCACCTTTTCAAAGCCCACA-AGTCAGTGGCACCCCTTTTC
* * * * * * ** * * *
1870580 AAAGCCC-CAAGTTAGTAGCACCTTTTTCAAAACCCACAAGTCGGTGGCAACTCTTTTCAATG-C
64 AAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGC-AC-CCTTCCAAAGCC
* * * *
1870643 CATAAAATCGGTGGCACC
127 CA-CAAGTCAGTGGCACA
* ** * * * * * *
1870661 CATCCATAG--CACAAGTTAGTGGCATCTCTTTCTAAAGCCCATACAAG-CTAG-GACTAACTC-
1 CTTTTAAAGCCCACAAGTTATTGGCACCT-TTTC-AAAGCCC--ACAAGTC-AGTGGC-ACCCCT
* * ** * * ***** *
1870721 TTTCAAAGCCTACACAAGTTAGTGGCACCTTTGGCAAACCCCGCACAAGTTGGCAGCACCCAGT-
60 TTTCAAAGCC--CACAAGTCAGTGGCACCCTTCTCAAA--GCTCACAAGTCAATGGCACCC-TTC
* ** * *
1870785 CAAAGCCCACACAATTTGGTAGCACC
120 CAAAG-CC-CACAAGTCAGTGGCACA
* * * * * *
1870811 CTAATCAAAGCCCACAAGTTAGTGGCAACCCCTTTT-AAAGCTCAAAAGTCAATGGCA-CCC-TT
1 CT-TTTAAAGCCCACAAGTTATTGGC-A--CCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTT
* * * ** * * * * * * *
1870873 CCAAATCCCATAAGTCAGTGGCACTGTT-TCAAAACCCACATGTTAGTGGCACCCATTTCAAAGG
62 TCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCACCC-TTCCAAAGC
* *
1870937 CCACAAGCCAGTGGCACCC
126 CCACAAGTCAGTGGCA-CA
* * * * *
1870956 CTTTTCAAAGCCCACCAGTCAGTGGCACATTTTTCAAAGCCCACAAGTCAGTGGCACCTCTTTTC
1 CTTTT-AAAGCCCACAAGTTATTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTC
* * *
1871021 AATGCCTACAAGTCAGTGGCATCCCTTCTCAAAGCTCACAAGTCAGTGGCACCCTTCCAAAGCCC
64 AAAGCCCACAAGTCAGTGGCA-CCCTTCTCAAAGCTCACAAGTCAATGGCACCCTTCCAAAGCCC
* *
1871086 ACGAGTCAGTGGCACC
128 ACAAGTCAGTGGCACA
* * * * * * *
1871102 CTTTTAAGGCGCATAAGTGATTGGCACCCTTTCAAAGCGCATAAGTCAGTGGCACCCCTTTTCAA
1 CTTTTAAAGCCCACAAGTTATTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCAA
* ** * * * * * * *
1871167 AGCCCAAAAGTCAACGGCACCCCTTTTCATAGCTCGCAAGCCATTGCCACCCTTCTAAAGCCCAC
66 AGCCCACAAGTCAGTGGCA-CCCTTCTCAAAGCTCACAAGTCAATGGCACCCTTCCAAAGCCCAC
*
1871232 AAGTCAGTGGCACT
130 AAGTCAGTGGCACA
*** * * * *
1871246 CTCCCAAAGCCCAGAAGTTAGTT-ACACCATTTTCAAAGCCCACAAGTCAGTGGCACACCTATTC
1 CTTTTAAAGCCCACAAGTTA-TTGGCACC-TTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTC
* * * * * * * * *
1871310 AAAGCTCATAAGTCAGGGGCACCCTCCT-AAATCCCATAAGTCAACGGCACCCTTTCAAAGCCCA
64 AAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCACCCTTCCAAAGCCCA
*
1871374 CAAGTCAGCGGCACA
129 CAAGTCAGTGGCACA
* * * * * * *
1871389 CTTTTCAATGCCCACAAGTTAGTGGCATACTTTTCAAGGCCCACAAGTCGGTGGCATCACTTTTC
1 CTTTT-AAAGCCCACAAGTTATTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTC
* * * ** *
1871454 AAAACCCACAAGTTAGTGGCACCCTTTTCAAAGC-CGACAAGTCAATGGCAACTATTTTCAAAGC
64 AAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTC-ACAAGTCAATGGC-AC-CCTTCCAAAG-
* * *
1871518 CCACACAAAAT-GGTGGCACC
125 CC-CAC-AAGTCAGTGGCACA
* * * ** * * **
1871538 CATCTAAAACCCACAAGTTAGGGGCACATTTTTCGAAGCTCGCACAAGTTGGTGGCA--CCTTTG
1 CTTTTAAAGCCCACAAGTTATTGGCAC-CTTTTCAAAGC-C-CACAAGTCAGTGGCACCCCTTT-
* ** * * * * ***
1871601 TCAAAGCCCGCATAAGTTGGCGGCACCC-TATCGAAGCCCACGCAAGTTGGTGGCACCCTAAT-C
62 TCAAAG-CC-CACAAGTCAGTGGCACCCTTCTCAAAGCTCA--CAAGTCAATGGCACCCT--TCC
* * *
1871664 AAAGTCCACAAGTTAGTGGCACCC
121 AAAGCCCACAAGTCAGTGGCA-CA
* * * * * * * * *
1871688 CTTTCAAAGCCCACATGTCAGTGGTACCCCTTTCAAAACCCATAAGTCAGTGGCA-CACTTTTCA
1 CTTTTAAAGCCCACAAGTTATTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCA
* * *** * * ** *** * * *
1871752 AAGCCCCCAAGTCAGTGACATTTTTTTCGAAGCAAACAAGTTGGTGACAACACTTTTCAAAGCTC
65 AAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGC-AC-CCTTCCAAAGC-C
* * * *
1871817 ACACAAATCGGTAGCTCA
127 -CACAAGTCAGTGGCACA
* * * * ** ** * **
1871835 -TTTCCAAAACCTATAAGACAGGGGCACCCTTTCCAAAGCCCACACAAGTTGGTGGCA--CCTTT
1 CTTT-TAAAGCCCACAAGTTATTGGCA-CCTTTTCAAAG-CC-CACAAGTCAGTGGCACCCCTTT
* * * ** * ***
1871897 GTCAAAGCCCGCACAGGTCGGCGGCACCC-AATCAAAGCCCACACAAGTTGGTGGCACCCTAAT-
62 -TCAAAG-CC-CACAAGTCAGTGGCACCCTTCTCAAAG--CTCACAAGTCAATGGCACCCT--TC
1871960 CAAAGCCCACAAGTCAGTGGCAC-
120 CAAAGCCCACAAGTCAGTGGCACA
* * * * *
1871983 CTTTTCAAAGTCCACAAGTCA-TAGCACCCCTTTTCAAAGCCCACAAGTTAGTGCCACCCCTTTT
1 CTTTT-AAAGCCCACAAGTTATTGGCA--CCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTT
* * * * ** *
1872047 CAAAGCCCATAA-CCTAGTGGCACCTATTTTCAAAGC-CTACAAGTCAGCGGCACCCCTTTTCAA
63 CAAAGCCCACAAGTC-AGTGGCACC-CTTCTCAAAGCTC-ACAAGTCAATGGCA-CCC-TTCCAA
* *
1872110 AGCCCACAAGTTAGTGGCACC
123 AGCCCACAAGTCAGTGGCACA
** * * * * * * * *
1872131 CTTCCAAAGCCCACAGGTTAGTAGCCCCCTTCCAAAGCCCCCAAGTTAGTGGCA--CCTTTTCCA
1 CTTTTAAAGCCCACAAGTTATTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTT-CA
* * * * * * * *
1872194 AAGCCCACAAGCCGGTGGCAACTCTTTTCAAAGCTCATACAAATCGATGGCAACCATCCAAAG--
65 AAGCCCACAAGTCAGTGGC-ACCCTTCTCAAAGCTC--ACAAGTCAATGGCACCCTTCCAAAGCC
** * *
1872257 CACAAGTTGGTTGCATCTC
127 CACAAGTCAGTGGCA-C-A
* * ** ** * * * * *
1872276 CTTCTAAAGCCCACCCAAGCTCGTACCAACTCTTTTCAAAGCCCACACA--AATTGGTAGCCCTC
1 CTTTTAAAGCCCA--CAAGTTATTGGC-AC-CTTTTCAAAGCCCACA-AGTCAGTGGCACCCCTT
* * * * * * * * **
1872339 TTCTAAAACCAAGAAATCAGGGGCACCCTT-TCCAAAGCCTACACAAGTTAGTGGCACCTTTGGT
61 TTC-AAAGCCCACAAGTCAGTGGCACCCTTCT-CAAAG-CT-CACAAGTCAATGGCACCCTT-CC
*
1872403 AAAGCCCGCCCAAGT---TGGCAGCA
121 AAAG-CC-CACAAGTCAGTGGCA-CA
* * ** * ** * * *
1872426 CTCAGTCAAAGCCCGTACAAGTTGGTGACACCCTAATCAAAGCCCATAAGTTAGTGGCATCCCTT
1 CT--TTTAAAGCCC--ACAAGTTATTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTT
* * * * * * * * ** * *
1872491 TTTAAAGCTCACAAGTCAATGGTACTCTTC-CAAAGCCCACAAGTTAGTGGCGTCATTTCAAAGC
61 TTCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCACCCTTCCAAAGC
*
1872555 CCACAAGTCAGTGGCACCT
126 CCACAAGTCAGTGGCA-CA
* * * * * *
1872574 CTTTTAAAGCCCACAAGCTAGTGGCACCCTTTTTCAAAGGCCACCAGTTAGTGGCA-CACTTTTC
1 CTTTTAAAGCCCACAAGTTATTGGCA-CC-TTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTC
* * * *
1872638 AATG-CCACAAGTCAGTGGCACCTCTTTTCAATGC-CTACAAGTCAGTGGCATCCCTTCTCAAAG
64 AAAGCCCACAAGTCAGTGGCACC-CTTCTCAAAGCTC-ACAAGTCAATGGCA-CCCTTC-CAAAG
**
1872701 CTAACAAGTCAGTGGCAC-
125 CCCACAAGTCAGTGGCACA
* * **
1872719 C-TTTACAATGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCGTAAGTCAGTGGCA-CCCTTTT-
1 CTTTTA-AA-GCCCACAAGTTATTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTC
* * * * * * **
1872781 AAAGCGCATAAGTCAGTGGCACCCCTTTTTTCAGAGGC-CACAAGTTAATGGCACCATTTTTTAA
64 AAAGCCCACAAGTCAGTGGCA-CCC--TTCTCA-AAGCTCACAAGTCAATGGCACC--CTTCCAA
*
1872845 AGCCCACAAGTCAGTGGCACT
123 AGCCCACAAGTCAGTGGCACA
** * * * *
1872866 CTTCCAAAGCCTACAAGTTAGTGGCACTCTTTT-AAAGCCAACAAGT-AGTGGCACCTC-TTTCA
1 CTTTTAAAGCCCACAAGTTATTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCA
* * * * * * * * *
1872928 AAGCCCACAAGTTAGTGGCACACTTTTTAAAACCCACAAGTCAGTGGCACCCTTTTCAAAGCCCG
65 AAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCACCC-TTCCAAAGCCCA
* *
1872993 TAAGTCGGTGGCA-A
129 CAAGTCAGTGGCACA
* * ** * * * *
1873007 CTTTTTTCAAAGCCCATAAGTCAGCGGCAACC-TTCCAAAGACCACAAGTCAATAGCACCCC--T
1 C--TTTT-AAAGCCCACAAGTTATTGGC-ACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTT
* * *** * * * * * * *
1873069 TCGAAGCCCACTAGTCAACAGCACACTTTTCAAAGGC-CTCAAGTTC-GTGGCACACTTTTCAAT
62 TCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAA-GCTCACAAG-TCAATGGCAC-CCTTCCAAA
* *
1873132 GCCCATAAGTCGGTGGCACA
124 GCCCACAAGTCAGTGGCACA
* * * * * **
1873152 CTTTTCAAAGCCCACAAGTCT-GTGGCACACCTTTCCGAAGCCCACAAGTGAATGGCA-TACTTT
1 CTTTT-AAAGCCCACAAGT-TATTGG--CACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTT
* * * * *
1873215 CCAAAGCCCACAAGTCAGTGGCACCTCCTT-TTAATGCGT-ACAAGTCAGTGGCATCCCTTTTCA
62 TCAAAGCCCACAAGTCAGTGGCA-C-CCTTCTCAAAGC-TCACAAGTCAATGGCA-CCC-TTCCA
* * * *
1873278 AAGCTCACAAGTCCGTGCCACC
122 AAGCCCACAAGTCAGTGGCACA
** ** * * * * ** *
1873300 CTTCCAAAGCCCACATTTTAGTGGC-TCTTTCCCAAAGCCCACAAGTTAGTTACA-CCC-TTTCG
1 CTTTTAAAGCCCACAAGTTATTGGCACCTTT-TCAAAGCCCACAAGTCAGTGGCACCCCTTTTCA
* * * * * * **
1873362 AAGCCCATAAGTTAGTGGCACCCATTTTCAAAGCCCACAAGTTAGTGGCACCCGTTTTTAAAGCC
65 AAGCCCACAAGTCAGTGGCACCC-TTCTCAAAGCTCACAAGTCAATGGCACCC--TTCCAAAGCC
* * *
1873427 CATAAGTCAGGGGCACC
127 CACAAGTCAGTGGCACA
** * ** * * * * *
1873444 CTTCCAAAGCCCACAAGTCAACGGCACCATTTCAAAGACCATAAGTTAGTGGCA-CACTTTTCAA
1 CTTTTAAAGCCCACAAGTTATTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCAA
* * * * * * * ** * * * *
1873508 TGCCCACAAGTTAGTGGCACACTTTTTAAGGAC-CACAAATCGGTGGCACCCCTTTTCGAAGTCT
66 AGCCCACAAGTCAGTGGCACCCTTCTCAAAG-CTCACAAGTCAATGGCA-CCC-TTCCAAAGCCC
*
1873572 ACAAGTCAGTGGCACC
128 ACAAGTCAGTGGCACA
* * * * * * * ** *
1873588 CTTTTTAAAGTCGAGAAGTCAGTGGCAACTCTTTTCAAAGCCCACACA--AAATGGTGCACCTTT
1 C-TTTTAAAGCCCACAAGTTATTGGC-AC-CTTTTCAAAGCCCACA-AGTCAGTGGCACCCCTTT
* * * * * *** * *
1873651 CCAAAACCCACAAGTCAATGGCACCCTTTTCAAAGCCTACATAAGTTGGTGGCACCTTTGTCAAA
62 TCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAG-CT-CACAAGTCAATGGCACCCTT-CCAAA
1873716 GCCCGCACAAGT---TGGCAGCA
124 G-CC-CACAAGTCAGTGGCA-CA
* ** **
1873736 CCTTGTCAAAGCCCACGCAAGTTGGTGGCACCCTAATCAAAGCCCACAAGTCAGTGGCATCCCC-
1 -CTT-TTAAAGCCCA--CAAGTTATTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCCT
* * * *
1873800 TTTCAAAGCCCACAAGTCAATGGCACCCCTT-TCAAAGCCCACAAGTCAATGGCACACTTTTCAA
60 TTTCAAAGCCCACAAGTCAGTGGCA-CCCTTCTCAAAGCTCACAAGTCAATGGCAC-CCTTCCAA
*
1873864 AGCCCACAAGTTAGTGGCAC
123 AGCCCACAAGTCAGTGGCAC
1873884 TTGTTTCAAA
Statistics
Matches: 3418, Mismatches: 834, Indels: 571
0.71 0.17 0.12
Matches are distributed among these distances:
140 16 0.00
141 6 0.00
142 59 0.02
143 189 0.06
144 809 0.24
145 498 0.15
146 325 0.10
147 378 0.11
148 323 0.09
149 267 0.08
150 218 0.06
151 209 0.06
152 88 0.03
153 20 0.01
154 8 0.00
155 3 0.00
156 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (143 bp):
CTTTTAAAGCCCACAAGTTATTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTTCAA
AGCCCACAAGTCAGTGGCACCCTTCTCAAAGCTCACAAGTCAATGGCACCCTTCCAAAGCCCACA
AGTCAGTGGCACA
Found at i:1871587 original size:31 final size:31
Alignment explanation
Indices: 1871549--1871626 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
1871539 ATCTAAAACC
* * *
1871549 CACAAGTTAGG-GGCACATTTTTCGAAGCTCG
1 CACAAGTT-GGCGGCACATTTGTCAAAGCCCG
* *
1871580 CACAAGTTGGTGGCACCTTTGTCAAAGCCCG
1 CACAAGTTGGCGGCACATTTGTCAAAGCCCG
*
1871611 CATAAGTTGGCGGCAC
1 CACAAGTTGGCGGCAC
1871627 CCTATCGAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
30 2 0.05
31 38 0.95
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (31 bp):
CACAAGTTGGCGGCACATTTGTCAAAGCCCG
Found at i:1871903 original size:31 final size:31
Alignment explanation
Indices: 1871868--1871998 Score: 126
Period size: 31 Copynumber: 4.4 Consensus size: 31
1871858 GCACCCTTTC
* **
1871868 CAAAGCCCACACAAGTTGGTGGCACCTTTGT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
* * * *
1871899 CAAAGCCCGCACAGGTCGGCGGCACC-CAAT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
* *
1871929 CAAAGCCCACACAAGTTGGTGGCACCCTAAT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
* *
1871960 CAAAG-CC-CACAAGTCAGTGGCACCTT-TT
1 CAAAGCCCACACAAGTCGGTGGCACCTTAAT
*
1871988 CAAAGTCCACA
1 CAAAGCCCACA
1871999 AGTCATAGCA
Statistics
Matches: 81, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
28 6 0.07
29 18 0.22
30 27 0.33
31 30 0.37
ACGTcount: A:0.30, C:0.34, G:0.21, T:0.16
Consensus pattern (31 bp):
CAAAGCCCACACAAGTCGGTGGCACCTTAAT
Found at i:1872101 original size:60 final size:60
Alignment explanation
Indices: 1871959--1872204 Score: 188
Period size: 60 Copynumber: 4.2 Consensus size: 60
1871949 GGCACCCTAA
* * * * * **
1871959 TCAAAGCCCACAAGTCAGTGGCA--CCTTTTCAAAGTCCACAA-GTCA-TAGCACCCCTTT
1 TCAAAGCCCACAAGTCAGCGCCACCCCTTTTCAAAGCCCACAACCT-AGTGGCACCTATTT
* * *
1872016 TCAAAGCCCACAAGTTAGTGCCACCCCTTTTCAAAGCCCATAACCTAGTGGCACCTATTT
1 TCAAAGCCCACAAGTCAGCGCCACCCCTTTTCAAAGCCCACAACCTAGTGGCACCTATTT
* * ** *
1872076 TCAAAGCCTACAAGTCAGCGGCACCCCTTTTCAAAGCCCACAAGTTAGTGGCACC--CTT
1 TCAAAGCCCACAAGTCAGCGCCACCCCTTTTCAAAGCCCACAACCTAGTGGCACCTATTT
* * * * * * **
1872134 CCAAAGCCCACAGGTTAGTAG-C-CCCC-TTCCAAAGCCCCCAAGTTAGTGGCACCT-TTT
1 TCAAAGCCCACAAGTCAG-CGCCACCCCTTTTCAAAGCCCACAACCTAGTGGCACCTATTT
*
1872191 CCAAAGCCCACAAG
1 TCAAAGCCCACAAG
1872205 CCGGTGGCAA
Statistics
Matches: 158, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
56 25 0.16
57 40 0.25
58 17 0.11
59 18 0.11
60 58 0.37
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.21
Consensus pattern (60 bp):
TCAAAGCCCACAAGTCAGCGCCACCCCTTTTCAAAGCCCACAACCTAGTGGCACCTATTT
Found at i:1872115 original size:90 final size:85
Alignment explanation
Indices: 1871975--1872143 Score: 241
Period size: 90 Copynumber: 1.9 Consensus size: 85
1871965 CCCACAAGTC
*
1871975 AGTGGCACCTTTTCAAAGTCCACAAGTCATAGCACCCCTTTTCAAAGCCCACAAGTTAGTGCCAC
1 AGTGGCACCTTTTCAAAGTCCACAAGTCACAGCACCCCTTTTCAAAGCCCACAAGTTAGTGCCA-
*
1872040 CCCTTTTCAAAGCCCATAACCT
65 CCC-TTCCAAAGCCCATAACCT
*
1872062 AGTGGCACCTATTTTCAAAG-CCTACAAGTCAGCGGCACCCCTTTTCAAAGCCCACAAGTTAGTG
1 AGTGGCACC--TTTTCAAAGTCC-ACAAGTCA-CAGCACCCCTTTTCAAAGCCCACAAGTTAGTG
*
1872126 GCACCCTTCCAAAGCCCA
62 CCACCCTTCCAAAGCCCA
1872144 CAGGTTAGTA
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
87 9 0.12
88 13 0.18
89 20 0.27
90 32 0.43
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.22
Consensus pattern (85 bp):
AGTGGCACCTTTTCAAAGTCCACAAGTCACAGCACCCCTTTTCAAAGCCCACAAGTTAGTGCCAC
CCTTCCAAAGCCCATAACCT
Found at i:1877312 original size:20 final size:20
Alignment explanation
Indices: 1877259--1877313 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1877249 AAATTCCCAG
**
1877259 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
1877279 ATGTATCGATACATTGAGT-A
1 ATGTATCGATACATTGA-TCA
1877299 ATGTATCGATACATT
1 ATGTATCGATACATT
1877314 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:1877666 original size:30 final size:30
Alignment explanation
Indices: 1877630--1880287 Score: 1030
Period size: 30 Copynumber: 90.5 Consensus size: 30
1877620 GGAGTCTACA
*
1877630 CACCCCTTTTCAAAGCCCACAAGTCAGTAG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1877660 CGCCCCTTTTCAAAGCCTACATGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1877690 CACCTCTTTTCAAAGCCTACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1877720 CACCCCTTTTCAAAGCCCACAAGTTATTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1877750 CA-CTC-TTCCAAAGCCCACAGGT---TCG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1877775 CGACCCCCTTCCATAGCCCCCAAGTTAGTGG
1 C-ACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1877806 CA--GCTTTTCCAAGGCCAACAAGTCGGTGG
1 CACCCCTTTT-CAAAGCCCACAAGTCAGTGG
* * * * * **
1877835 CAACACTTTTTAAAGCCTATACAAATTGGTGG
1 CACCCCTTTTCAAAGCC--CACAAGTCAGTGG
* * * **
1877867 CA-ACC-ATCCAAAG--CACAAGTTGGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1877893 CATCTC-TTTCTAAAGCCCACCCAA---ACTCG
1 CACCCCTTTTC-AAAGCCCA--CAAGTCAGTGG
* * * * *
1877922 CACGAACTCTTTTCAAATGCCACAGAAATCGGTAG
1 CAC---CCCTTTTCAAA-GCC-CACAAGTCAGTGG
* * * *
1877957 C-CCTC-TTCCAAAACCAACAAGTCAG-GG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1877984 CA-CGCTTTCCAAAGCCATACAAGTTAGTCG
1 CACCCCTTTTCAAAGCC-CACAAGTCAGTGG
*
1878014 CA--CCTTTGGCAAAGCTCGCA-AAGT---TGG
1 CACCCCTTT-TCAAAGC-C-CACAAGTCAGTGG
** ** *
1878041 CAGCACCC-AGTCAAAGCCCACACAAGTTGGTAG
1 CA-C-CCCTTTTCAAAG-CC-CACAAGTCAGTGG
** * *
1878074 CA-CCCTAATCAAAGCGCACAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *** *
1878103 CATCCCCTTTT-TAAGTGTACAAGTCAATGG
1 CA-CCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1878133 CA--CCTTTCCAAAGCCTACTAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
1878161 CA--CCTTTTCAAAGCCCACAAG-CTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* * * *
1878189 CACACCTTTTCAATGCCCACAGGTCAGGGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * ** *
1878219 TA-CACTTTTCGAAGCTTACAAGTCAATGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1878248 CACCTCTTTTCAATGCCTACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1878278 CA-ACCTTTCTCGAAGCTCACAAGTCAGTGA
1 CACCCCTTT-TCAAAGCCCACAAGTCAGTGG
* * * **
1878308 CA-CTC-TTCCAAAGCCCACAAATCAGCAG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
** * *
1878336 CA-CCC-TTTCAAAGCTAATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1878364 CA--CCTTTTTAAAGCCCATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1878392 CACCCCTTTTCCAACCCCACAAATCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1878422 CACCCCTTTTCAAAACCCACAAGTCAGTAG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1878452 CACCTC-TTTCAAAGCCCATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1878481 CA-CCC-TTCCAAATCTCACAAGTCAATCG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1878509 TA-CCATTTT-AAAGCCCATAAGT-TGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * ** * *
1878536 CA-CACTTTCCAAAATCCACAAATCGGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
**
1878565 CACCCCTTTTCAAAGCCCGTAAG-CTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* * *
1878595 CA--CCTTTTACAAAGCCCGCAAG-CTTGTAG
1 CACCCCTTTT-CAAAGCCCACAAGTC-AGTGG
* *
1878624 CA-CCCTTTTCAAAGCCAACAAATCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1878653 AAACTCTTTTCAAAGCCCATACAAATCGGTGG
1 CACCCCTTTTCAAAGCCC--ACAAGTCAGTGG
* ** * *
1878685 CA-CCC-TTCCAAAATCCACAGGTCAGGGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * **
1878713 CA-CCCTTTCCAAAGCCTACCCAAGTTGGTGG
1 CACCCCTTTTCAAAGCC--CACAAGTCAGTGG
* * * *
1878744 CA--CCTTTGTCAAAACCCGC-A-TAAATTGG
1 CACCCCTTT-TCAAAGCCCACAAGT-CAGTGG
* ** *
1878772 CAGCACCTTTGTCAAAGCCCGCACAAGTTGGCGG
1 CA-CCCCTTT-TCAAAG-CC-CACAAGTCAGTGG
** * * **
1878806 CA-CCCTAATCAAAGCGCACAAGTCAATAT
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
** *
1878835 CATACCTTTTCAAAGCCTACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
** * * *
1878865 CACTAC-TTTCAATGCCCATAAGTCAATGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1878894 CA--CTTATTTCAATGCCCACAAGTCCGTGG
1 CACCCCT-TTTCAAAGCCCACAAGTCAGTGG
* * * * * **
1878923 GA-CCTTTTTGAAAGCTCTCAAGTTGGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1878952 CAGCTCTTTTCAAATCCCACACAATTCAGTGG
1 CACCCCTTTTCAAA-GCC-CACAAGTCAGTGG
* *
1878984 CA-CCC-TTCCAAAAGCCC-CAAGTCTGTGG
1 CACCCCTTTTC-AAAGCCCACAAGTCAGTGG
* * **
1879012 CA-CCATTTCCAAAGCCCACACAAGTTGGTGG
1 CACCCCTTTTCAAAG-CC-CACAAGTCAGTGG
* * ** *
1879043 CA--CCTTTGTCGAAGCTCGCAAAAGTTGGCGG
1 CACCCCTTT-TCAAAGC-C-CACAAGTCAGTGG
* *** *
1879074 CA--TCGAATCAAAGCCCACATGT--GTTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAG-TGG
*
1879101 TAACACCCTTTTCAAAGCCCACAAGTCAGTGG
1 -CAC-CCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1879133 CA-CCCTTTT-AAAGCCCACAAGTTAGTGT
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1879161 CA-CTCTTTTTAAAGCCCAGAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1879190 TAGCACTTTTC-AGGCCCACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1879219 CA-CACTTTTTAAAGCCCCCAAG-CTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
** * * *
1879248 CACCTATCTTCAAAGCTCATAAG-CTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
*
1879278 CACCCCTTTTCAAAGCCCACAAGTCAATGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1879308 CACCTCTTTTCAAAGCTCACAAGTCGGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * ** * **
1879338 TAACTTTTTTCAAAGCCCACACAAATTGGTGG
1 CACCCCTTTTCAAAG-CC-CACAAGTCAGTGG
* *
1879370 CA-CCC-TTCCAAAACCCACAAGTCAAG-GG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* **
1879398 CA-CCCTTTCCAAAGCCCACATAAGTTGGTGG
1 CACCCCTTTTCAAAGCCCAC--AAGTCAGTGG
1879429 CA--CCTTTGTCAAAGCCATCACAAGT---TGG
1 CACCCCTTT-TCAAAGCC--CACAAGTCAGTGG
** **
1879457 CGACACCC-AATCAAAGCCTACACAAGTTGGTGG
1 C-AC-CCCTTTTCAAAGCC--CACAAGTCAGTGG
** * ** *
1879490 CA-CCCTAATCAAAACCCTTATG-CGAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* * *
1879519 CA--CCTTTTTAAAGCCCATAAGTAAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
*
1879547 CACCCCTTTTCACAGCCCACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* **
1879577 CACCCATTTTCAAAGCCTGCAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1879607 CA-CCC-TTCCAAAGCCCACAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
** * **
1879635 CACCTATTTTCAAGGCTTACAAGT-ATGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCA-GTGG
* *
1879665 CACCCCTTTTCAAA-CCCATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1879694 CACCTCTTTTCAAAGCCTACAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
*
1879724 CA-CCC-TTTCAAAGCCCACAATTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1879752 CACCCC-TTTCAAAGCCCACAAGCCAGTAG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
** *
1879781 CACCCCTTTTCAAAGCTTACAAGTCAGAGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1879811 CA---TTTTTCAAAGCCCACAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1879838 CACCTCTTTTCAATGCCTATAAGGCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * **
1879868 CATCCCTTCTCAAAACACACAAGTGTGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1879898 CA-CCC-TTCCAAAGCCCACAGGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1879926 CA-CCC-TTTCAAAGCCAATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
1879954 CA-CCCTTTT-AAAGCCCACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1879982 CA--CCATTTCAAAGCCCATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1880010 CACCTC-ATTCGAAGCCTACAAG-CTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* *
1880039 CACCCCTTTTCAAAGCCCATAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1880069 CA-CACTTTTCAAAGCCCACAAGTTAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * *
1880098 CACCTCTTTTCAATGTCTATAAGTTAATGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1880128 CATCCCTTCTT-GAAGCTCC-CAAGTCAGTGG
1 CACCCCTT-TTCAAAGC-CCACAAGTCAGTGG
* *
1880158 CA-CCC-TTCCAAAGCCCACAAGTCAATGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1880186 CA-TCC-TTTCAAAACCCATAAGTAAATGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
*
1880214 CA-CCCTTTT-AAAGCCCATAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1880242 CACCACTTTTCAAAGCGCACAAGTCAGTGG
1 CACCCCTTTTCAAAGCCCACAAGTCAGTGG
*
1880272 CACCCCTATTCAAAGC
1 CACCCCTTTTCAAAGC
1880288 TGAAAGCTAA
Statistics
Matches: 1976, Mismatches: 501, Indels: 302
0.71 0.18 0.11
Matches are distributed among these distances:
25 3 0.00
26 15 0.01
27 61 0.03
28 489 0.25
29 439 0.22
30 717 0.36
31 150 0.08
32 69 0.03
33 21 0.01
34 8 0.00
35 4 0.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (30 bp):
CACCCCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:1877703 original size:60 final size:60
Alignment explanation
Indices: 1877630--1880287 Score: 767
Period size: 59 Copynumber: 45.3 Consensus size: 60
1877620 GGAGTCTACA
* * * *
1877630 CACCCCTTTTCAAAGCCCACAAGTCAGTAGCGCCCCTTTTCAAAGCCTACATGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1877690 CACCTCTTTTCAAAGCCTACAAGTCAGTGGCACCCCTTTTCAAAGCCCACAAGTTATTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * * *
1877750 CA-CTC-TTCCAAAGCCCACAGGT---TCGCGACCCCCTTCCATAGCCCCCAAGTTAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGC-ACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * * * * * * **
1877806 CAGCT-TTTCCAAGGCCAACAAGTCGGTGGCAACACTTTTTAAAGCCTATACAAATTGGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCC--CACAAGTCAGTGG
* * * ** * * * * *
1877867 CAAC-C-ATCCAAAG--CACAAGTTGGTGGCATCTC-TTTCTAAAGCCCACCCAA---ACTCG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTC-AAAGCCCA--CAAGTCAGTGG
* * * * * * *
1877922 CACGAACTCTTTTCAAATGCCACAGAAATCGGTAGC-CCTC-TTCCAAAACCAACAAGTCAG-GG
1 CAC---CTCTTTTCAAA-GCC-CACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * ** **
1877984 CA-CGCTTTCCAAAGCCATACAAGTTAGTCGCA--CCTTTGGCAAAGCTCGCA-AAGTTGGCAG
1 CACCTCTTTTCAAAGCC-CACAAGTCAGTAGCACCCCTTT-TCAAAGC-C-CACAAGTCAGTGG
** ** ** * *
1878044 CACC-C-AGTCAAAGCCCACACAAGTTGGTAGCA-CCCTAATCAAAGCGCACAAGTTAGTGG
1 CACCTCTTTTCAAAG-CC-CACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * *** * * * * *
1878103 CATCCCCTTTT-TAAGTGTACAAGTCAATGGCA--CCTTTCCAAAGCCTACTAGTCAGTGG
1 CA-CCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * *
1878161 CA-C-CTTTTCAAAGCCCACAAG-CTAGTGGCACACCTTTTCAATGCCCACAGGTCAGGGG
1 CACCTCTTTTCAAAGCCCACAAGTC-AGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * ** * * * * *
1878219 TA-CACTTTTCGAAGCTTACAAGTCAATGGCACCTCTTTTCAATGCCTACAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * **
1878278 CAACCT-TTCTCGAAGCTCACAAGTCAGT-G-A-CACTCTTCCAAAGCCCACAAATCAGCAG
1 C-ACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCT-TTTCAAAGCCCACAAGTCAGTGG
** * * * * * *
1878336 CACC-C-TTTCAAAGCTAATAAGTTAGTGGCA--CCTTTTTAAAGCCCATAAGTTAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * *
1878392 CACCCCTTTTCCAACCCCACAAATCAGTGGCACCCCTTTTCAAAACCCACAAGTCAGTAG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * * *
1878452 CACCTC-TTTCAAAGCCCATAAGTTAGTGGCA-CCC-TTCCAAATCTCACAAGTCAATCG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * * ** * *
1878509 TACC-ATTTT-AAAGCCCATAAGT-TGTGGCA-CACTTTCCAAAATCCACAAATCGGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* ** * * * *
1878565 CACCCCTTTTCAAAGCCCGTAAG-CTAGTGGCA--CCTTTTACAAAGCCCGCAAG-CTTGTAG
1 CACCTCTTTTCAAAGCCCACAAGTC-AGTAGCACCCCTTTT-CAAAGCCCACAAGTC-AGTGG
* * * * * * * *
1878624 CACC-CTTTTCAAAGCCAACAAATCAGTGGAAACTCTTTTCAAAGCCCATACAAATCGGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCC--ACAAGTCAGTGG
* ** * ** * * **
1878685 CACC-C-TTCCAAAATCCACAGGTCAGGGGCA-CCCTTTCCAAAGCCTACCCAAGTTGGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCC--CACAAGTCAGTGG
* * * * * * * ** *
1878744 CACCT-TTGTCAAAACCCGC-A-TAAATTGGCAGCACCTTTGTCAAAGCCCGCACAAGTTGGCGG
1 CACCTCTTTTCAAAGCCCACAAGT-CAGTAGCA-CCCCTTT-TCAAAG-CC-CACAAGTCAGTGG
** * * * ** *
1878806 CACC-CTAATCAAAGCGCACAAGTCAATATCATACCTTTTCAAAGCCTACAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * *
1878865 CA-CTAC-TTTCAATGCCCATAAGTCAATGGCA--CTTATTTCAATGCCCACAAGTCCGTGG
1 CACCT-CTTTTCAAAGCCCACAAGTCAGTAGCACCCCT-TTTCAAAGCCCACAAGTCAGTGG
* * * * ** * * * * *
1878923 GACCT-TTTTGAAAGCTCTCAAGTTGGTGGCAGCTCTTTTCAAATCCCACACAATTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAA-GCC-CACAAGTCAGTGG
* * * * * **
1878984 CACC-C-TTCCAAAAGCCC-CAAGTCTGTGGCA-CCATTTCCAAAGCCCACACAAGTTGGTGG
1 CACCTCTTTTC-AAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAG-CC-CACAAGTCAGTGG
* * * ** ** * *** *
1879043 CACCT-TTGTCGAAGCTCGCAAAAGTTGGCGGCA--TCGAATCAAAGCCCACATGT--GTTGG
1 CACCTCTTTTCAAAGC-C-CACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAG-TGG
* * *
1879101 TAACACC-CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTT-AAAGCCCACAAGTTAGTGT
1 ---CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * *
1879161 CA-CTCTTTTTAAAGCCCAGAAGTCAGTGGTAGCACTTTTC-AGGCCCACAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * ** * * *
1879219 CACACT-TTTT-AAAGCCCCCAAG-CTAGTGGCACCTATCTTCAAAGCTCATAAG-CTAGTGG
1 CAC-CTCTTTTCAAAGCCCACAAGTC-AGTAGCACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* * * * * *
1879278 CACCCCTTTTCAAAGCCCACAAGTCAATGGCACCTCTTTTCAAAGCTCACAAGTCGGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * ** * * *
1879338 TAACTTTTTTCAAAGCCCACACAAATTGGTGGCA-CCC-TTCCAAAACCCACAAGTCAAG-GG
1 CACCTCTTTTCAAAG-CC-CACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* ** * ** * *
1879398 CACC-CTTTCCAAAGCCCACATAAGTTGGTGGCA--CCTTTGTCAAAGCCATCACAAGTTGGCGA
1 CACCTCTTTTCAAAGCCCAC--AAGTCAGTAGCACCCCTTT-TCAAAGCC--CACAAGTCAGTGG
** ** * ** * ** *
1879460 CACC-C-AATCAAAGCCTACACAAGTTGGTGGCA-CCCTAATCAAAACCCTTATG-CGAGTGG
1 CACCTCTTTTCAAAGCC--CACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* * * *
1879519 CACCT-TTTT-AAAGCCCATAAGTAAGTGGCACCCCTTTTCACAGCCCACAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
** * * *
1879577 CACC-CATTTTCAAAGCCTGCAAGTCAGTGGCA-CCC-TTCCAAAGCCCACAAGTTAGTGG
1 CACCTC-TTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * ** * * *
1879635 CACCTATTTTCAAGGCTTACAAGT-ATGTGGCACCCCTTTTCAAA-CCCATAAGTTAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCA-GTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1879694 CACCTCTTTTCAAAGCCTACAAGTTAGTGGCA-CCC-TTTCAAAGCCCACAATTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * ** *
1879752 CACC-CCTTTCAAAGCCCACAAGCCAGTAGCACCCCTTTTCAAAGCTTACAAGTCAGAGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * *
1879811 CA--T-TTTTCAAAGCCCACAAGTTAGTGGCACCTCTTTTCAATGCCTATAAGGCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * ** * * *
1879868 CATCC-CTTCTCAAAACACACAAGTGTGTGGCA-CCC-TTCCAAAGCCCACAGGTCAGTGG
1 CA-CCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1879926 CACC-C-TTTCAAAGCCAATAAGTTAGTGGCA-CCCTTTT-AAAGCCCACAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * * *
1879982 CA-C-CATTTCAAAGCCCATAAGTTAGTGGCACCTC-ATTCGAAGCCTACAAG-CTAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTC-AGTGG
* * * * * *
1880039 CACCCCTTTTCAAAGCCCATAAGTTAGTGGCA-CACTTTTCAAAGCCCACAAGTTAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * * * * * * *
1880098 CACCTCTTTTCAATGTCTATAAGTTAATGGCATCCCTTCTT-GAAGCTCC-CAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTT-TTCAAAGC-CCACAAGTCAGTGG
* * * * * * * *
1880158 CACC-C-TTCCAAAGCCCACAAGTCAATGGCA-TCC-TTTCAAAACCCATAAGTAAATGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1880214 CACC-CTTTT-AAAGCCCATAAGTCAGTGGCACCACTTTTCAAAGCGCACAAGTCAGTGG
1 CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
* *
1880272 CACCCCTATTCAAAGC
1 CACCTCTTTTCAAAGC
1880288 TGAAAGCTAA
Statistics
Matches: 1948, Mismatches: 481, Indels: 338
0.70 0.17 0.12
Matches are distributed among these distances:
55 27 0.01
56 216 0.11
57 221 0.11
58 420 0.22
59 476 0.24
60 356 0.18
61 122 0.06
62 82 0.04
63 17 0.01
64 11 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (60 bp):
CACCTCTTTTCAAAGCCCACAAGTCAGTAGCACCCCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:1878020 original size:29 final size:28
Alignment explanation
Indices: 1877962--1878020 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
1877952 GGTAGCCCTC
*
1877962 TTCCAAAACCAACAAGTCAGGGCACGCT
1 TTCCAAAACCAACAAGTCAGCGCACGCT
* *
1877990 TTCCAAAGCCATACAAGTTAGTCGCAC-CT
1 TTCCAAAACCA-ACAAGTCAG-CGCACGCT
1878019 TT
1 TT
1878021 GGCAAAGCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 10 0.38
29 12 0.46
30 4 0.15
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (28 bp):
TTCCAAAACCAACAAGTCAGCGCACGCT
Found at i:1878096 original size:29 final size:29
Alignment explanation
Indices: 1878023--1878097 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
1878013 GCACCTTTGG
*
1878023 CAAAGCTCGCA-AAGTTGGCAGCACCCAGT
1 CAAAGC-CGCACAAGTTGGCAGCACCCAAT
* *
1878052 CAAAGCCCACACAAGTTGGTAGCACCCTAAT
1 CAAAG-CCGCACAAGTTGGCAGCACCC-AAT
1878083 CAAAG-CGCACAAGTT
1 CAAAGCCGCACAAGTT
1878098 AGTGGCATCC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 17 0.44
30 15 0.38
31 7 0.18
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.15
Consensus pattern (29 bp):
CAAAGCCGCACAAGTTGGCAGCACCCAAT
Found at i:1878304 original size:89 final size:87
Alignment explanation
Indices: 1878143--1878304 Score: 195
Period size: 89 Copynumber: 1.8 Consensus size: 87
1878133 CACCTTTCCA
* *
1878143 AAGCCTACTAGTCAGTGGCACCTTTTCAAAGCCCACAAGCTAGTGGCACACCTTTTCAATGCCCA
1 AAGCCTACAAGTCAATGGCACCTTTTCAAAGCCCACAAGCTAGTGGCACACCTTTTCAATGCCCA
*
1878208 CAGGTCAGGGGTACACTTTTCG
66 CAAGTCAGGGGTACACTTTTCG
* * *
1878230 AAGCTTACAAGTCAATGGCACCTCTTTTCAATGCCTACAAG-TCAGTGGCA-ACCTTTCTCGAA-
1 AAGCCTACAAGTCAATGGCA-C-CTTTTCAAAGCCCACAAGCT-AGTGGCACACCTTT-TC-AAT
*
1878292 GCTCACAAGTCAG
61 GCCCACAAGTCAG
1878305 TGACACTCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
87 17 0.27
88 8 0.13
89 36 0.57
90 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (87 bp):
AAGCCTACAAGTCAATGGCACCTTTTCAAAGCCCACAAGCTAGTGGCACACCTTTTCAATGCCCA
CAAGTCAGGGGTACACTTTTCG
Done.