Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1840
Parameters: 2 7 7 80 10 50 1000
Length:  48465

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1504--1551
2
24.0
2
100
0
96
0
50
0
50
1.00
3567--3595
2
15.0
2
92
7
51
48
0
0
51
1.00
3840--3876
2
18.5
2
100
0
74
48
0
0
51
1.00
4255--4282
7
4.0
7
100
0
56
57
14
14
14
1.66
5804--5849
10
4.6
10
88
0
56
0
8
47
43
1.34
5804--5850
6
7.8
6
87
0
58
0
8
46
44
1.33
5804--5850
4
11.8
4
86
0
58
0
8
46
44
1.33
7999--8372
30
12.5
30
95
1
633
12
39
16
31
1.86
12911--12941
1
31.0
1
93
0
53
0
96
0
3
0.21
13128--13210
10
8.5
10
75
11
66
60
0
0
39
0.97
13123--13180
5
11.8
5
85
10
84
62
0
0
37
0.96
13131--13249
20
5.9
19
74
18
82
57
0
0
41
1.04
18554--18584
2
15.5
2
93
0
53
54
0
0
45
0.99
22330--22359
2
15.0
2
100
0
60
50
0
50
0
1.00
27779--27831
24
2.2
25
86
3
72
54
0
1
43
1.11
28320--28359
19
2.2
17
86
8
53
45
0
0
55
0.99
28403--28440
19
2.0
20
84
5
51
34
2
2
60
1.24
32586--32694
18
5.7
18
73
24
59
54
0
0
44
1.06
32608--32693
32
3.0
27
72
21
77
52
1
0
46
1.08
32631--32682
15
3.3
15
73
21
52
55
0
0
44
0.99
32595--32661
22
3.3
20
69
23
52
53
1
0
44
1.09
32602--32687
33
2.5
33
83
9
102
53
1
0
45
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32632--32684
17
3.2
17
76
23
60
56
0
0
43
0.99
32593--32695
20
5.2
20
65
15
52
55
0
0
43
1.06
32643--32750
27
4.0
27
71
18
82
54
0
2
41
1.21
33163--33201
18
2.1
18
90
4
60
38
0
0
61
0.96
33158--33199
21
2.0
21
85
4
57
40
0
0
59
0.97
35764--35850
15
5.9
15
69
6
52
49
3
2
44
1.31
35808--35905
52
1.9
49
82
12
117
43
1
0
55
1.06
37255--37301
18
2.6
18
77
12
51
38
8
2
51
1.45
38080--38116
19
1.9
19
94
0
65
56
0
0
43
0.99
38101--38177
23
3.1
24
83
11
93
53
0
1
45
1.08
38832--38958
50
2.5
50
88
0
182
30
17
18
33
1.94
38942--38971
14
2.1
14
93
0
51
30
6
33
30
1.83
38892--39021
64
2.0
64
92
0
215
30
19
20
30
1.97
38956--39157
50
4.0
50
93
0
323
29
21
18
30
1.97
43788--43837
19
2.7
18
85
11
66
50
4
6
40
1.46
45268--45339
7
9.4
7
78
14
54
33
0
0
66
0.92
45262--45324
19
3.6
17
79
16
58
38
0
0
61
0.96
45284--45324
19
2.3
19
87
8
59
36
0
0
63
0.95
45729--45852
66
1.9
66
85
6
171
56
3
7
33
1.43
46076--46116
2
20.5
2
100
0
82
48
0
0
51
1.00
46286--46318
15
2.3
15
89
5
50
60
0
0
39
0.97
47051--47106
23
2.6
23
86
8
73
53
1
0
44
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48005--48076
16
4.3
18
70
19
50
43
0
0
56
0.99

Tables:   1

The End!