Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1843
Parameters: 2 7 7 80 10 50 1000
Length:  52442

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1145--1225
20
4.1
19
81
10
92
0
7
9
82
0.83
1150--1226
12
6.1
12
74
22
61
0
7
7
84
0.78
1188--1260
33
2.3
31
77
17
51
0
16
1
82
0.75
1157--1226
20
3.5
20
84
2
95
0
8
7
84
0.78
1150--1258
52
2.1
52
83
13
136
0
12
5
81
0.85
9145--9237
32
2.9
32
88
4
134
34
8
17
39
1.80
9308--9436
52
2.5
52
93
0
222
35
17
17
29
1.93
17807--17853
21
2.3
20
82
7
58
42
17
17
23
1.88
18641--18769
52
2.5
52
96
0
240
28
18
18
34
1.95
18842--18938
19
5.8
18
70
27
88
37
18
12
31
1.88
18837--18936
32
3.1
32
97
0
182
36
19
12
33
1.88
18861--18917
13
3.9
13
74
24
51
33
19
14
33
1.91
20616--21192
81
7.2
81
82
6
638
29
25
11
33
1.91
20616--21192
236
2.4
237
82
10
672
29
25
11
33
1.91
24328--24513
97
1.9
97
86
0
264
31
11
26
29
1.92
26191--26258
12
5.7
11
74
11
55
2
20
1
75
1.02
26223--26272
13
3.9
13
86
5
66
0
18
2
80
0.82
27622--27712
37
2.5
37
100
0
182
34
29
9
26
1.89
27788--27875
31
2.8
32
86
5
110
20
19
30
29
1.97
27830--28238
28
14.5
28
86
5
418
24
16
26
32
1.96
29520--29605
19
4.9
18
83
9
74
5
2
6
84
0.83
29540--29604
8
7.9
8
79
19
71
4
1
6
87
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29530--29603
26
3.0
24
86
13
105
5
2
5
86
0.78
29518--29601
45
1.9
43
87
4
123
5
2
7
84
0.85
29530--29605
25
3.0
26
88
3
93
6
2
5
85
0.81
29537--29604
1
68.0
1
76
0
64
4
1
5
88
0.69
41180--41366
97
1.9
97
93
0
320
30
12
27
29
1.93
41417--41571
70
2.2
70
89
0
238
32
12
24
30
1.92
43340--43427
11
7.7
11
79
5
95
3
18
1
77
0.97

Tables:   1

The End!