genome.fa.s1845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1845
Parameters: 2 7 7 80 10 50 1000
Length:  111620

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346--417	3	23.7	3	76	8	65	0	34	1	63	1.03
343--417	24	3.0	24	74	25	75	0	36	1	62	1.04
3758--3804	22	2.1	22	100	0	94	44	17	17	21	1.86
5642--5676	16	2.2	16	90	5	54	77	2	20	0	0.90
6016--6061	8	5.6	8	89	5	74	21	13	13	52	1.73
6580--6647	34	2.0	34	100	0	136	41	8	17	32	1.80
6903--6934	15	2.1	15	100	0	64	34	18	12	34	1.89
10925--10976	20	2.5	20	84	3	68	40	9	15	34	1.80
13316--13384	33	2.1	33	83	5	86	30	13	18	37	1.89
19275--19314	21	1.9	21	84	0	53	20	0	25	55	1.44
19489--19528	13	3.1	13	96	0	71	30	12	15	42	1.83
21419--21474	22	2.5	22	82	0	67	39	7	32	21	1.80
21992--22064	20	3.7	19	83	7	85	27	13	19	39	1.89
22109--22161	13	4.5	13	71	26	55	33	13	16	35	1.88
22093--22161	33	2.1	33	89	5	104	31	13	18	36	1.89
23749--24149	156	2.6	155	80	2	414	39	20	15	24	1.91
27754--27882	52	2.5	52	89	0	204	27	15	20	37	1.92
27958--28055	19	5.7	19	68	27	76	37	17	12	32	1.87
27954--28049	32	3.0	32	95	1	165	36	17	12	33	1.88
27977--28033	13	3.9	13	74	24	51	35	17	14	33	1.90
29577--29729	79	1.9	79	81	0	180	34	10	23	31	1.89
29697--29762	28	2.4	28	89	0	105	28	22	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29718--30001	79	3.6	78	92	1	460	30	15	27	26	1.96
29953--30024	27	2.6	28	88	2	101	20	20	34	23	1.96
32449--32474	13	2.0	13	100	0	52	38	15	15	30	1.88
33431--33666	61	3.9	61	83	6	241	27	19	25	27	1.99
34157--34239	26	3.1	26	64	16	69	19	21	31	27	1.97
33733--34404	55	11.9	55	88	5	940	23	20	28	27	1.98
35466--35512	16	2.9	16	87	12	62	0	2	10	87	0.63
35473--35515	6	7.7	6	87	7	56	0	0	13	86	0.58
47045--47118	20	3.7	20	85	7	105	40	12	16	31	1.85
47845--47999	46	3.3	47	83	5	190	32	18	27	21	1.97
48092--48903	28	27.5	30	82	7	714	23	16	30	29	1.97
48079--48905	89	9.3	89	85	4	937	23	17	29	29	1.97
48071--48905	181	4.7	179	87	3	1036	24	17	29	28	1.97
48749--48976	28	8.2	28	89	1	235	25	13	33	28	1.93
48151--48983	60	14.2	56	78	10	368	24	16	29	29	1.96
50241--50291	17	2.9	17	80	19	61	5	13	9	70	1.32
53762--53802	21	2.0	21	85	9	57	39	12	9	39	1.76
53883--54016	53	2.5	53	92	2	225	37	16	17	29	1.91
54042--54072	10	3.1	10	90	0	53	22	29	6	41	1.78
54060--54114	21	2.5	22	94	5	103	27	25	10	36	1.89
54172--54210	13	3.0	13	88	0	60	33	15	15	35	1.89
56677--56702	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56659--56722	32	2.0	32	87	9	94	39	15	17	28	1.90
60759--60789	15	2.1	15	93	0	53	48	16	22	12	1.80
62870--62908	13	3.0	13	88	0	60	30	12	17	38	1.88
63017--63062	21	2.2	20	81	11	58	32	19	4	43	1.71
65473--65498	13	2.0	13	100	0	52	38	15	15	30	1.88
65455--65518	32	2.0	32	90	9	103	40	15	15	28	1.88
68764--68837	20	3.7	20	82	7	96	39	13	16	31	1.87
73444--73573	50	2.6	50	86	1	161	36	13	23	26	1.91
75898--75927	13	2.3	13	100	0	60	40	13	16	30	1.87
76227--76774	45	12.3	45	84	1	667	43	17	20	18	1.88
76227--76774	89	6.2	89	88	1	767	43	17	20	18	1.88
76227--76774	179	3.1	178	90	1	803	43	17	20	18	1.88
78397--78439	18	2.4	18	80	3	52	4	11	6	76	1.13
80961--81000	21	2.0	20	85	5	53	7	30	2	60	1.38
81550--81588	15	2.6	15	95	0	69	69	15	2	12	1.30
81552--81595	15	3.0	15	90	3	54	70	15	4	9	1.30
83873--83907	15	2.2	17	90	10	56	22	0	0	77	0.78
84580--84641	25	2.5	25	86	2	81	1	33	16	48	1.56
85892--85998	7	14.3	7	70	18	56	19	3	1	74	1.06
85897--85954	8	7.4	8	79	9	66	20	1	1	75	0.97
85892--85962	16	4.9	14	78	18	65	19	2	1	76	0.99
85897--85998	25	4.2	24	77	15	77	20	2	1	74	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85898--85948	23	2.2	23	86	6	68	19	1	1	76	0.98
85897--85982	31	2.7	32	82	12	104	20	2	2	74	1.04
86123--86164	19	2.2	19	100	0	84	30	11	23	33	1.91
87319--87359	17	2.3	17	87	8	55	43	0	2	53	1.13
87490--87867	154	2.5	152	79	6	363	38	19	13	28	1.89
87611--87996	152	2.5	152	76	9	379	39	18	14	27	1.90
88324--88372	24	2.2	24	85	10	68	57	24	0	18	1.41
90566--90590	13	1.9	13	100	0	50	36	16	16	32	1.90
90547--90611	32	2.0	32	93	0	112	33	10	16	38	1.84
90526--90609	19	4.7	19	78	18	99	33	10	17	38	1.85
92563--92624	26	2.3	26	82	15	74	6	16	1	75	1.08
93134--93161	13	2.2	13	100	0	56	28	14	17	39	1.89
93114--93179	33	2.0	33	85	5	89	30	13	13	42	1.83
98658--98695	20	1.9	20	89	10	60	31	13	13	42	1.82
101366--101405	13	2.9	13	89	10	62	37	15	15	32	1.88
105352--105396	21	2.1	21	88	8	65	22	17	4	55	1.60
107615--107640	13	2.0	13	100	0	52	30	15	15	38	1.88
107595--107658	32	2.0	33	87	3	94	28	14	17	40	1.88
108511--108557	7	6.9	7	81	13	62	0	2	12	85	0.70
108508--108569	11	5.3	12	77	14	60	0	1	14	83	0.71
108509--108569	20	2.9	19	76	21	59	0	1	14	83	0.72
108511--108569	27	2.2	28	82	14	79	0	1	15	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108511--108576	34	2.0	33	82	11	82	1	3	15	80	0.91

Tables:   1

The End!