Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold185
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1073966
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.28
Warning! 182459 characters in sequence are not A, C, G, or T
File 5 of 7
Found at i:463181 original size:88 final size:88
Alignment explanation
Indices: 462983--463389 Score: 398
Period size: 88 Copynumber: 4.7 Consensus size: 88
462973 GTGATGTAAC
* * * * * * * *
462983 TACAAGCGTCAATAAAGT-GC-AATGCATATAAAATGATGCAAATACTAATGTTATC-CAAA-GT
1 TACAAGCATTAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCCAATGTCATCTAAAATGC
* *
463044 ACA-GTGCGTGAAATGATGCAAA
66 ACATGTGCATGAAATGATACAAA
** * * *
463066 TACAAGCATTAATAAAAAAGTAAATGCATAT-AAGATGATGCAAATACTAATGTCATCTAAAATG
1 TACAAGCATTAATAAAGTAGCAAATGCATATGAA-ATGATGCAAATGCCAATGTCATCTAAAATG
* * * *
463130 CACATGTACGTGAAATAATGCAAA
65 CACATGTGCATGAAATGATACAAA
** * * * *
463154 TGTAAGCATTAATAAAGTAGCAAATGCATATGAAATGATGTAAATGCCACTATCATCTAAAGTGC
1 TACAAGCATTAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCCAATGTCATCTAAAATGC
* * *
463219 AGATGTGCATGAAACGATACAAC
66 ACATGTGCATGAAATGATACAAA
* * * *
463242 TACAAGCATTAATAAAG-AGGCAAATGCATGTGAAATGTTACAAATGCCAATATCATCTAAAATG
1 TACAAGCATTAATAAAGTA-GCAAATGCATATGAAATGATGCAAATGCCAATGTCATCTAAAATG
*
463306 CAAATGTGCATGAAATGATACAAA
65 CACATGTGCATGAAATGATACAAA
* * * *
463330 TGCAACCATTAATAAAGT-GATAAATGCATATGAAATAATGCAAATGCCAATGTCATCTAA
1 TACAAGCATTAATAAAGTAG-CAAATGCATATGAAATGATGCAAATGCCAATGTCATCTAA
463390 TCCCAATTGG
Statistics
Matches: 267, Mismatches: 47, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
83 14 0.05
84 3 0.01
85 31 0.12
86 3 0.01
87 6 0.02
88 208 0.78
89 2 0.01
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (88 bp):
TACAAGCATTAATAAAGTAGCAAATGCATATGAAATGATGCAAATGCCAATGTCATCTAAAATGC
ACATGTGCATGAAATGATACAAA
Found at i:464050 original size:112 final size:112
Alignment explanation
Indices: 463619--464072 Score: 369
Period size: 112 Copynumber: 3.9 Consensus size: 112
463609 AAAAACTTTG
* * * * * *
463619 GTTGGCTCAAAAATTGCAAAACTAATAGGATACATG-CCTTATTTTTTTAAGAACAAATGGATTA
1 GTTGGCTCAAAATTTTCAAAACTAATAGGATACATGTCC-TATTTTCTTAGGTACAAATAGATTA
* * * * *
463683 AGTTGTACAAAACATGATTTTTTTTGAAAATTAAATAAATTTGATGTT
65 AGTTGTATAAAACATGAATTTCTTTGAAAATTAGACAAATTTGATGTT
* * * * ** ** *
463731 ATTGGCTCAAAATTTTGAAAACTGATAGGATATATACCCTATTTTCCTT-GGTATGAATGGATTA
1 GTTGGCTCAAAATTTTCAAAACTAATAGGATACATGTCCTATTTT-CTTAGGTACAAATAGATTA
* * * *
463795 GGTTGTATAAAGCATG-A-TGCTTTGAAAATTAGACAAATTTAGTGTTGTTGGCTGATATT
65 AGTTGTATAAAACATGAATTTCTTTGAAAATTAGAC-AA---A------TT---TGATGTT
* * ** *
463854 GTTGGCTCAAAATTTTCAAAATTAATAGGATACATGCTCC-ATTTTCCTAGGTATGAATAGATCA
1 GTTGGCTCAAAATTTTCAAAACTAATAGGATACATG-TCCTATTTTCTTAGGTACAAATAGATTA
* * * *
463918 GGATGTATAGAACATAAATTTCTTTGAAAATTAGACAAATTTGATGTT
65 AGTTGTATAAAACATGAATTTCTTTGAAAATTAGACAAATTTGATGTT
* *
463966 GTTGGCTTAAAATTTTCAAAACTAATAAGATACATGTCCTATTTTCTTAGGTACAAATAGATTAA
1 GTTGGCTCAAAATTTTCAAAACTAATAGGATACATGTCCTATTTTCTTAGGTACAAATAGATTAA
* * *
464031 GTTGTATAAAATATGAATTTTTTTTTGAAAATCAGACAAATT
66 GTTGTATAAAACATGAA--TTTCTTTGAAAATTAGACAAATT
464073 AATATTCTTT
Statistics
Matches: 269, Mismatches: 51, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
110 13 0.05
111 5 0.02
112 131 0.49
113 4 0.01
114 22 0.08
115 2 0.01
120 2 0.01
121 1 0.00
122 2 0.01
123 66 0.25
124 5 0.02
125 16 0.06
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (112 bp):
GTTGGCTCAAAATTTTCAAAACTAATAGGATACATGTCCTATTTTCTTAGGTACAAATAGATTAA
GTTGTATAAAACATGAATTTCTTTGAAAATTAGACAAATTTGATGTT
Found at i:465685 original size:20 final size:20
Alignment explanation
Indices: 465647--465701 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
465637 AAGTACCTAG
465647 ATGTATCGATACA-TCATAC
1 ATGTATCGATACATTCATAC
465666 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTCATAC
465686 ATGTATCGATACATTC
1 ATGTATCGATACATTC
465702 TGGTTTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 13 0.37
20 22 0.63
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTCATAC
Found at i:469963 original size:47 final size:47
Alignment explanation
Indices: 469894--469986 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
469884 GTTTACATAT
469894 TTAGAATATCAAATAACATAAAATAAAAAGAGAAAGGGTAAGAAGTA
1 TTAGAATATCAAATAACATAAAATAAAAAGAGAAAGGGTAAGAAGTA
469941 TTAGAATATCAAATAACATAAAATAAAAAGAGAAAGGGTAAGAAGT
1 TTAGAATATCAAATAACATAAAATAAAAAGAGAAAGGGTAAGAAGT
469987 GTTCCCCCGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.59, C:0.04, G:0.17, T:0.19
Consensus pattern (47 bp):
TTAGAATATCAAATAACATAAAATAAAAAGAGAAAGGGTAAGAAGTA
Found at i:471777 original size:154 final size:154
Alignment explanation
Indices: 471518--471926 Score: 473
Period size: 154 Copynumber: 2.7 Consensus size: 154
471508 TGATTACATT
* * * **
471518 GGACTCGATTCTAAAAAAATTACCAAAATACCCTTAGA-TATACTTTCAACGTAAAAGTATCTCG
1 GGACTCGATTCTAAGAAAATTACCAAAATGCCTTTAGAGTATACTTTTGACGTAAAAGTATCTCG
* * * *
471582 GTAACCGTAAAGGACAAAAAAAGATAATAAAAGGATGAACCTATCCTAAATGTACATCC-TTGGC
66 GTAACCCTAAAAGACAAAAAAAGATAATAAAAGGATAAACCTATCCTAAATGCACA-CCTTTGGC
* *
471646 ATAAAAGCGACCTAGTGACAACCTA
130 ATAAAAGCAACCCAGTGACAACCTA
* * * * *
471671 GGACTCGGTTCTAAGGAAATTGCCAAAATGCCTTTAGAGTATACTTTTGATGTGAAAGTATCTCG
1 GGACTCGATTCTAAGAAAATTACCAAAATGCCTTTAGAGTATACTTTTGACGTAAAAGTATCTCG
** *
471736 GTAACCCTAAAAGACACGAAAAGATAATAAAATGATAAACCTATCCTAAATGCACACCTTTGGCA
66 GTAACCCTAAAAGACAAAAAAAGATAATAAAAGGATAAACCTATCCTAAATGCACACCTTTGGCA
* **
471801 TAAAAGCAACCCGGTGATGACCTA
131 TAAAAGCAACCCAGTGACAACCTA
* * * * * * *
471825 AGACTCAATTCTAAGAAAATTATCAAAATGCTCTTAAG-GTATACCTATGACGTAAAAGTATCTA
1 GGACTCGATTCTAAGAAAATTACCAAAATGC-CTTTAGAGTATACTTTTGACGTAAAAGTATCTC
* * * *
471889 GGTAATCCTAAAAGACATATAAAGATAAAGAAAAGGAT
65 GGTAACCCTAAAAGACAAAAAAAGAT-AATAAAAGGAT
471927 GATTTTTATC
Statistics
Matches: 212, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
153 34 0.16
154 164 0.77
155 14 0.07
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (154 bp):
GGACTCGATTCTAAGAAAATTACCAAAATGCCTTTAGAGTATACTTTTGACGTAAAAGTATCTCG
GTAACCCTAAAAGACAAAAAAAGATAATAAAAGGATAAACCTATCCTAAATGCACACCTTTGGCA
TAAAAGCAACCCAGTGACAACCTA
Found at i:472423 original size:31 final size:31
Alignment explanation
Indices: 472387--472446 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
472377 GACCCAAACA
* *
472387 ATCTAAAATGCTTGAAAATATACCAAAATGC
1 ATCTAAAATACGTGAAAATATACCAAAATGC
*
472418 ATCTAAAATACGTGAAAATATCCCAAAAT
1 ATCTAAAATACGTGAAAATATACCAAAAT
472447 TAGCTTAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (31 bp):
ATCTAAAATACGTGAAAATATACCAAAATGC
Found at i:473573 original size:6 final size:6
Alignment explanation
Indices: 473552--473609 Score: 57
Period size: 6 Copynumber: 9.7 Consensus size: 6
473542 ATGAAACTAG
* *
473552 TTAAAA ATAAAA -TAAAA TTAAAA TTATAAAA TTAAAA -GAAAA TTAAAA
1 TTAAAA TTAAAA TTAAAA TTAAAA -T-TAAAA TTAAAA TTAAAA TTAAAA
*
473600 TTAAAG TTAA
1 TTAAAA TTAA
473610 TAATCATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 9 0.20
6 28 0.64
7 2 0.05
8 5 0.11
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (6 bp):
TTAAAA
Found at i:473587 original size:25 final size:25
Alignment explanation
Indices: 473553--473602 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
473543 TGAAACTAGT
*
473553 TAAAAATAAAATAAAATTAAAATTA
1 TAAAAATAAAAGAAAATTAAAATTA
*
473578 TAAAATTAAAAGAAAATTAAAATTA
1 TAAAAATAAAAGAAAATTAAAATTA
473603 AAGTTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (25 bp):
TAAAAATAAAAGAAAATTAAAATTA
Found at i:475021 original size:30 final size:30
Alignment explanation
Indices: 474945--475023 Score: 79
Period size: 33 Copynumber: 2.5 Consensus size: 30
474935 TGAATAGATC
* *
474945 AATTATATTAAAATAAAAAATTTAAATATTA
1 AATTATATT-TAATAAAAAATTTAAATATAA
*
474976 AATATATAATTTTAATAAATAATTATAAA-ATAA
1 AAT-TAT-A-TTTAATAAAAAATT-TAAATATAA
475009 AATTATATTTAATAA
1 AATTATATTTAATAA
475024 GAATATATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
30 8 0.20
31 4 0.10
32 6 0.15
33 17 0.41
34 6 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (30 bp):
AATTATATTTAATAAAAAATTTAAATATAA
Found at i:475034 original size:17 final size:17
Alignment explanation
Indices: 475004--475072 Score: 61
Period size: 17 Copynumber: 4.0 Consensus size: 17
474994 ATAATTATAA
475004 AATAA-AAT-TATATTT
1 AATAAGAATATATATTT
475019 AATAAGAATATATATTT
1 AATAAGAATATATATTT
* * *
475036 GATTAAGCAGTATGATCTTT
1 -AATAAG-AATAT-ATATTT
*
475056 AATAAGAATATAGATTT
1 AATAAGAATATATATTT
475073 TAGGTAATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
15 5 0.12
16 3 0.07
17 11 0.26
18 9 0.21
19 9 0.21
20 5 0.12
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (17 bp):
AATAAGAATATATATTT
Found at i:478970 original size:51 final size:51
Alignment explanation
Indices: 478905--479021 Score: 162
Period size: 51 Copynumber: 2.3 Consensus size: 51
478895 TCGGAAATAA
* * *
478905 CAGGGTTGGAGTATCCCCGATGGTAAAAAATCGATATTTTGGAAATAAAAC
1 CAGGGTTGGAGTATCCCCGATGATAAAAAATCAATATTTTAGAAATAAAAC
* * * *
478956 CAGGGTTGGAGTATCCCTGATGATAGAAAATCAATGTTTTAGAAATAAAAT
1 CAGGGTTGGAGTATCCCCGATGATAAAAAATCAATATTTTAGAAATAAAAC
*
479007 CAGGATTGGAGTATC
1 CAGGGTTGGAGTATC
479022 TTATTGAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (51 bp):
CAGGGTTGGAGTATCCCCGATGATAAAAAATCAATATTTTAGAAATAAAAC
Found at i:479208 original size:50 final size:51
Alignment explanation
Indices: 479108--479221 Score: 212
Period size: 50 Copynumber: 2.3 Consensus size: 51
479098 CGGAAATAAC
*
479108 GAGGTTAGAGTATCCCCGATGGTGAAAAATCGGTGTTTTAGAAATAAAACT
1 GAGGTTAGAGTATCCCCGATGGTGAAAAATCAGTGTTTTAGAAATAAAACT
479159 GAGGTTAGAGTATCCCCGATGGTG-AAAATCAGTGTTTTAGAAATAAAACT
1 GAGGTTAGAGTATCCCCGATGGTGAAAAATCAGTGTTTTAGAAATAAAACT
479209 GAGGTTAGAGTAT
1 GAGGTTAGAGTAT
479222 TCCCTCAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
50 38 0.61
51 24 0.39
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (51 bp):
GAGGTTAGAGTATCCCCGATGGTGAAAAATCAGTGTTTTAGAAATAAAACT
Found at i:479242 original size:28 final size:29
Alignment explanation
Indices: 479209--479277 Score: 97
Period size: 28 Copynumber: 2.4 Consensus size: 29
479199 AAATAAAACT
*
479209 GAGGTTAGAGTATTCCC-TCAAAAATAAC
1 GAGGTTGGAGTATTCCCTTCAAAAATAAC
*
479237 GAGGTTGGAGTA-TCCCTTCAGAAATAAC
1 GAGGTTGGAGTATTCCCTTCAAAAATAAC
*
479265 GGGGTTGGAGTAT
1 GAGGTTGGAGTAT
479278 CTCTAATGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.11
28 32 0.89
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (29 bp):
GAGGTTGGAGTATTCCCTTCAAAAATAAC
Found at i:479328 original size:79 final size:78
Alignment explanation
Indices: 479236--479473 Score: 262
Period size: 81 Copynumber: 3.0 Consensus size: 78
479226 TCAAAAATAA
* * *
479236 CGAGGTTGGAGTATCCCTTCAGAAATAACGGGGTTGGAGTATCTCTAATGGTGGAAAATCGGTGT
1 CGAGGTTGGAGTATCCCTT-GGAAATAACGGGGTTGGAGTATCTCTGATGATGGAAAATCGGTGT
479301 TTTAGAAATAAAAC
65 TTTAGAAATAAAAC
* * * * * * * *
479315 CGAGGTTGTAGTATCCCCTTGGAAATAACGAGGTTGGAATATCTTTGATTATGAAAAAAATTGAT
1 CGAGGTTGGAGTAT-CCCTTGGAAATAACGGGGTTGGAGTATCTCTGATGATG--GAAAATCGGT
* * *
479380 ATTTTGGAAATAAAAT
63 GTTTTAGAAATAAAAC
* * *
479396 TG-GAGTTGGAGTATCTCCTTGGAAATAACGGGGTTGGAGTATCCCCGATGATGGAAAATCGGTG
1 CGAG-GTTGGAGTATC-CCTTGGAAATAACGGGGTTGGAGTATCTCTGATGATGGAAAATCGGTG
479460 TTTTAGAAATAAAA
64 TTTTAGAAATAAAA
479474 ATATGAATGA
Statistics
Matches: 127, Mismatches: 27, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
79 59 0.46
80 7 0.06
81 61 0.48
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (78 bp):
CGAGGTTGGAGTATCCCTTGGAAATAACGGGGTTGGAGTATCTCTGATGATGGAAAATCGGTGTT
TTAGAAATAAAAC
Found at i:481054 original size:16 final size:16
Alignment explanation
Indices: 481035--481090 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
481025 TTCGAGCAAG
481035 TTTGGGTTTGAGTTCA
1 TTTGGGTTTGAGTTCA
* *
481051 TTT-GGTTTCGGGTTCG
1 TTTGGGTTT-GAGTTCA
* *
481067 TTTGGGTTCGAGTTTA
1 TTTGGGTTTGAGTTCA
*
481083 TTCGGGTT
1 TTTGGGTT
481091 CAAACTTATT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
15 5 0.16
16 22 0.71
17 4 0.13
ACGTcount: A:0.07, C:0.09, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTGGGTTTGAGTTCA
Found at i:481091 original size:16 final size:16
Alignment explanation
Indices: 481070--481129 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
481060 GGGTTCGTTT
*
481070 GGGTTCGAGTTTATTC
1 GGGTTCAAGTTTATTC
**
481086 GGGTTCAAACTTATTC
1 GGGTTCAAGTTTATTC
* **
481102 AGGTTCGGGTTTATTC
1 GGGTTCAAGTTTATTC
*
481118 GAGTTCAAGTTT
1 GGGTTCAAGTTT
481130 GGGTTCGGGT
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (16 bp):
GGGTTCAAGTTTATTC
Found at i:481306 original size:19 final size:19
Alignment explanation
Indices: 481266--481307 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
481256 TTTTAAGTAA
* *
481266 ATTTTTATTATATTATTAT
1 ATTTTTAATATATTAATAT
481285 ATTTTTAATATATTTAAT-T
1 ATTTTTAATATA-TTAATAT
481304 ATTT
1 ATTT
481308 ATTTATTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTTAATATATTAATAT
Found at i:481371 original size:18 final size:18
Alignment explanation
Indices: 481334--481371 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
481324 ATTTATATAC
*
481334 AAAATTAATTTGTTATAT
1 AAAATTAATTTGTTAAAT
*
481352 AAAATTAATTTTTTAAAT
1 AAAATTAATTTGTTAAAT
481370 AA
1 AA
481372 TTTATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
AAAATTAATTTGTTAAAT
Found at i:482047 original size:16 final size:15
Alignment explanation
Indices: 482020--482049 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
482010 ATGTTAACTT
482020 TATATTCTATTCTAC
1 TATATTCTATTCTAC
482035 TATATTGCTATTCTA
1 TATATT-CTATTCTA
482050 AGTGTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.17, G:0.03, T:0.53
Consensus pattern (15 bp):
TATATTCTATTCTAC
Found at i:482568 original size:16 final size:16
Alignment explanation
Indices: 482551--482607 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
482541 TCTGGTTCTT
*
482551 TCGAGTTTGGGCTTTT
1 TCGAGTTTGGGCTTTC
**
482567 TCGAGTTTGAACTTTC
1 TCGAGTTTGGGCTTTC
* *
482583 TCGGGTTTGGGCTATC
1 TCGAGTTTGGGCTTTC
482599 TCGAGTTTG
1 TCGAGTTTG
482608 AGTAATTTCG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.11, C:0.16, G:0.30, T:0.44
Consensus pattern (16 bp):
TCGAGTTTGGGCTTTC
Found at i:483063 original size:21 final size:20
Alignment explanation
Indices: 483017--483064 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
483007 ATTTATTATT
**
483017 AATAAAAATAAAAATATTTT
1 AATAAAAATAAAAATATTAA
**
483037 TTTAAAAATAAAATATATTAA
1 AATAAAAATAAAA-ATATTAA
483058 AATAAAA
1 AATAAAA
483065 TATTATTTAA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AATAAAAATAAAAATATTAA
Found at i:483082 original size:20 final size:19
Alignment explanation
Indices: 483010--483082 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 19
483000 TATAATAATT
*
483010 TATTATTAATAAAAATAAAAA
1 TATTATTTA-AAAAAT-AAAA
* *
483031 TATTTTTTTAAAAATAAAA
1 TATTATTTAAAAAATAAAA
483050 TA-TA-TT--AAAATAAAA
1 TATTATTTAAAAAATAAAA
483065 TATTATTTAAAAATATAA
1 TATTATTTAAAAA-ATAA
483083 GATAAAACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
15 11 0.26
16 2 0.05
17 4 0.09
18 1 0.02
19 9 0.21
20 10 0.23
21 6 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TATTATTTAAAAAATAAAA
Found at i:483487 original size:4 final size:4
Alignment explanation
Indices: 483478--483516 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
483468 ATCTTAAATA
* *
483478 TTAT TTAT TTAT TGAT GTAT TATAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT T-TAT TTAT TTAT TTAT TT
483517 TTAATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (4 bp):
TTAT
Found at i:483544 original size:22 final size:23
Alignment explanation
Indices: 483512--483588 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 23
483502 TTTATTTATT
*
483512 TATTTTTAATTAA-ATTAAAAAA
1 TATTTTAAATTAAGATTAAAAAA
* **
483534 TATTTTAAATTTAATACAAATAAAA
1 TATTTTAAA-TTAAGATTAA-AAAA
**
483559 TATTCAAAATATAAGATTAAAAAA
1 TATTTTAAAT-TAAGATTAAAAAA
483583 TATTTT
1 TATTTT
483589 TGATAAATAA
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
22 8 0.20
23 4 0.10
24 12 0.29
25 17 0.41
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (23 bp):
TATTTTAAATTAAGATTAAAAAA
Found at i:483708 original size:15 final size:17
Alignment explanation
Indices: 483678--483714 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
483668 TTCTTGCCAC
*
483678 AAATTTGAAGAATA-TT
1 AAATTTGAAAAATATTT
483694 AAATTT-AAAAATATTT
1 AAATTTGAAAAATATTT
483710 AAATT
1 AAATT
483715 AGTTATCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
AAATTTGAAAAATATTT
Found at i:484360 original size:20 final size:21
Alignment explanation
Indices: 484320--484373 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
484310 TTTTACAATT
*
484320 TGTATCGATACAAATAGTGAA
1 TGTATCGATACATATAGTGAA
484341 TGTATCGATACATA-AGTGAA
1 TGTATCGATACATATAGTGAA
*
484361 TGTATCAATACAT
1 TGTATCGATACAT
484374 GTTCGAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (21 bp):
TGTATCGATACATATAGTGAA
Found at i:486974 original size:79 final size:79
Alignment explanation
Indices: 486889--487154 Score: 284
Period size: 79 Copynumber: 3.4 Consensus size: 79
486879 ATCGGGGATG
* *
486889 CTCCAACCTCATTTTTATTTCCAACATATTAAAATTTTCATCTCAGG-GATACTCTAACCTTGTT
1 CTCCAACCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTC-GGAGATACTCTAACCTTGTT
* * *
486953 ATTTTCGAGGGGACA
65 ATTTCCGAAGGAACA
* ** * * * ***
486968 CTCCAACCCCATTTTTATTTCTAAAATA-TCGATTTTTCACCATCGGAGATATTCTAACCCCATT
1 CTCCAACCCCATTTTTATTTCCAAAATATTAAAATTTTCATC-TCGGAGATACTCTAACCTTGTT
*
487032 ATTTCCGAAGGAATA
65 ATTTCCGAAGGAACA
* * * *
487047 CTCCAACCCCGTTTTTATTTCCAAAATATTAAAATTTTCATCTCGGAGACACTCCAACCTTGATA
1 CTCCAACCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGAGATACTCTAACCTTGTTA
* *
487112 TTTCCAAAGGAATA
66 TTTCCGAAGGAACA
* * *
487126 CTCTAACCCCGTTTTTATTTCTAAAATAT
1 CTCCAACCCCATTTTTATTTCCAAAATAT
487155 CAATTTTTCA
Statistics
Matches: 153, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
78 11 0.07
79 133 0.87
80 9 0.06
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.36
Consensus pattern (79 bp):
CTCCAACCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGAGATACTCTAACCTTGTTA
TTTCCGAAGGAACA
Found at i:487184 original size:158 final size:158
Alignment explanation
Indices: 486889--487236 Score: 468
Period size: 158 Copynumber: 2.2 Consensus size: 158
486879 ATCGGGGATG
* * * * * *
486889 CTCCAACCTCATTTTTATTTCCAACATATTAAAATTTTCATCTCAGGGATACTCTAACCTTGTTA
1 CTCCAACCCCGTTTTTATTTCCAAAATATTAAAATTTTCATCTCAGGGACACTCCAACCTTGATA
* * * * *
486954 TTTTCGAGGGGACACTCCAACCCCATTTTTATTTCTAAAATATCGATTTTTCACCATCGGAGATA
66 TTTCCAAAGGAACACTCCAACCCCATTTTTATTTCTAAAATATCAATTTTTCACCATCGGAGATA
*
487019 TTCTAACCCCATTATTTCCGAAGGAATA
131 TTCTAACCCCATCATTTCCGAAGGAATA
487047 CTCCAACCCCGTTTTTATTTCCAAAATATTAAAATTTTCATCTC-GGAGACACTCCAACCTTGAT
1 CTCCAACCCCGTTTTTATTTCCAAAATATTAAAATTTTCATCTCAGG-GACACTCCAACCTTGAT
* * *
487111 ATTTCCAAAGGAATACTCTAACCCCGTTTTTATTTCTAAAATATCAATTTTTCACCATCGCG-GA
65 ATTTCCAAAGGAACACTCCAACCCCATTTTTATTTCTAAAATATCAATTTTTCACCATCG-GAGA
* *
487175 TACTT-TAACCCCATCATTTCCGAGGGGATA
129 TA-TTCTAACCCCATCATTTCCGAAGGAATA
* * *
487205 CTCCAACCCCGTTTTCACTTCCAAAGTATTAA
1 CTCCAACCCCGTTTTTATTTCCAAAATATTAA
487237 TTTTTTTTCA
Statistics
Matches: 167, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
157 2 0.01
158 162 0.97
159 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (158 bp):
CTCCAACCCCGTTTTTATTTCCAAAATATTAAAATTTTCATCTCAGGGACACTCCAACCTTGATA
TTTCCAAAGGAACACTCCAACCCCATTTTTATTTCTAAAATATCAATTTTTCACCATCGGAGATA
TTCTAACCCCATCATTTCCGAAGGAATA
Found at i:487194 original size:79 final size:78
Alignment explanation
Indices: 486967--487219 Score: 296
Period size: 79 Copynumber: 3.2 Consensus size: 78
486957 TCGAGGGGAC
* *
486967 ACTCCAACCCCATTTTTATTTCTAAAATATCGATTTTTCACCATCGGAGATA-TTCTAACCCCAT
1 ACTCCAACCCCGTTTTTATTTCTAAAATATCAATTTTTCACCATCGGAGATACTT-TAACCCCA-
487031 TATTTCCGAAGGAAT
64 TATTTCCGAAGGAAT
* * * * * ** **
487046 ACTCCAACCCCGTTTTTATTTCCAAAATATTAAAATTTTCATC-TCGGAGACACTCCAACCTTGA
1 ACTCCAACCCCGTTTTTATTTCTAAAATA-TCAATTTTTCACCATCGGAGATACTTTAACC-CCA
*
487110 TATTTCCAAAGGAAT
64 TATTTCCGAAGGAAT
*
487125 ACTCTAACCCCGTTTTTATTTCTAAAATATCAATTTTTCACCATCGCG-GATACTTTAACCCCAT
1 ACTCCAACCCCGTTTTTATTTCTAAAATATCAATTTTTCACCATCG-GAGATACTTTAACCCCAT
* *
487189 CATTTCCGAGGGGAT
65 -ATTTCCGAAGGAAT
487204 ACTCCAACCCCGTTTT
1 ACTCCAACCCCGTTTT
487220 CACTTCCAAA
Statistics
Matches: 142, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
78 12 0.08
79 118 0.83
80 12 0.08
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (78 bp):
ACTCCAACCCCGTTTTTATTTCTAAAATATCAATTTTTCACCATCGGAGATACTTTAACCCCATA
TTTCCGAAGGAAT
Found at i:488477 original size:13 final size:13
Alignment explanation
Indices: 488459--488484 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
488449 TACACTAAGT
488459 ATGTATCGATACA
1 ATGTATCGATACA
488472 ATGTATCGATACA
1 ATGTATCGATACA
488485 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:488482 original size:32 final size:33
Alignment explanation
Indices: 488441--488504 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
488431 TAGCCAAACT
* **
488441 TGTATCGATACACTAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
488473 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
488505 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:489001 original size:34 final size:35
Alignment explanation
Indices: 488938--489004 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
488928 CTAAGTGATT
488938 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
488974 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
489005 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:490122 original size:21 final size:21
Alignment explanation
Indices: 490096--490137 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
490086 AATCAATCGT
* *
490096 TCAAGATGATGATGAAGATGA
1 TCAAGAGGATGATGAAAATGA
*
490117 TCAAGAGGTTGATGAAAATGA
1 TCAAGAGGATGATGAAAATGA
490138 AGAAATGGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.24
Consensus pattern (21 bp):
TCAAGAGGATGATGAAAATGA
Found at i:490683 original size:84 final size:84
Alignment explanation
Indices: 490523--490683 Score: 186
Period size: 84 Copynumber: 1.9 Consensus size: 84
490513 ACTCAAAGAA
* * * *
490523 GAAAATAAATCAATAAGTGTAGAGAATCATATTCTTGAAAAGAAATTAAGTGAATTAGAGAAGAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAG
* *
490588 TATGAAAGAGTTACAAAAT
66 AAAGAAAGAGTTACAAAAT
* *
490607 GAAAATAAATCAATGAGTTTAGAAAAT-A-ATTCTTTTAAAAAGAAAATAAATGAATT--AGAAG
1 GAAAATAAATCAATAAGTGTAGAAAATCATATTC--TTAAAAAGAAAATAAATGAATTAGAGAAG
490668 AGAAAAGAAATGAGTT
64 AG-AAAGAAA-GAGTT
490684 GCAAGTCGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
82 11 0.17
83 6 0.09
84 48 0.74
ACGTcount: A:0.53, C:0.04, G:0.17, T:0.25
Consensus pattern (84 bp):
GAAAATAAATCAATAAGTGTAGAAAATCATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAG
AAAGAAAGAGTTACAAAAT
Found at i:492195 original size:20 final size:20
Alignment explanation
Indices: 492170--492219 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
492160 TTAAAAGCAA
492170 ATCGATACTTTGCTCAAAGT
1 ATCGATACTTTGCTCAAAGT
492190 ATCGATACTTTGCTCAAAGT
1 ATCGATACTTTGCTCAAAGT
492210 ATCGATACTT
1 ATCGATACTT
492220 CTGGATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (20 bp):
ATCGATACTTTGCTCAAAGT
Found at i:492254 original size:13 final size:13
Alignment explanation
Indices: 492236--492260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
492226 TTTTCCAGAT
492236 TGTATCGATACAA
1 TGTATCGATACAA
492249 TGTATCGATACA
1 TGTATCGATACA
492261 TTACTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:494078 original size:13 final size:13
Alignment explanation
Indices: 494060--494085 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
494050 TACACCAAGT
494060 ATGTATCGATACA
1 ATGTATCGATACA
494073 ATGTATCGATACA
1 ATGTATCGATACA
494086 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:494083 original size:32 final size:33
Alignment explanation
Indices: 494042--494105 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
494032 TAGCCAAACT
**
494042 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
494074 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
494106 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:494608 original size:34 final size:35
Alignment explanation
Indices: 494545--494611 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 35
494535 CTAAGTGATT
494545 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
*
494581 GAGAGGTTTCTATCTTAGTC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
494612 TGTTGTAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 8 0.28
36 9 0.31
37 12 0.41
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:500003 original size:20 final size:20
Alignment explanation
Indices: 499941--500014 Score: 60
Period size: 20 Copynumber: 3.7 Consensus size: 20
499931 AAAAACCCAA
* * *
499941 AATGTATCGATACA-AAACA
1 AATGTATTGATACATATACG
**
499960 AATTGTATTGATACATATGGG
1 AA-TGTATTGATACATATACG
*
499981 AATGTATTGATACATTTACG
1 AATGTATTGATACATATACG
* *
500001 AATATATCGATACA
1 AATGTATTGATACA
500015 ATGTTTTGAC
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
19 2 0.05
20 38 0.88
21 3 0.07
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (20 bp):
AATGTATTGATACATATACG
Found at i:506841 original size:612 final size:612
Alignment explanation
Indices: 505648--506849 Score: 2138
Period size: 612 Copynumber: 2.0 Consensus size: 612
505638 CATGGAAGAC
*
505648 AAAACGGTGCCATAGAAGTTTGAAATTGAGGTACTAATTAATAGGGAATCTAGTTAGAAATCAGT
1 AAAACAGTGCCATAGAAGTTTGAAATTGAGGTACTAATTAATAGGGAATCTAGTTAGAAATCAGT
*
505713 CAATGTTGATCTCAGAGGTAAATCATTTAACCTATAATGGCAAATGTTATGCTTTAATCATCCCT
66 CAATGTTGATCTCAGAGGTAAATCATTTAACCTATAATGGAAAATGTTATGCTTTAATCATCCCT
* *
505778 TTGAAGTCGTAAAAAAGGTGTACAAACAACTTTTGTATAGGAATCTTCATTTTCTCATAAACCGT
131 TTGAAGTCGTAAAAAAGGTGTACAAACAACTTTTGTATAGGAATCTTCATTTTCCCATAAACCGC
505843 ATAGTATTCAGGCACCAATAGATTGGCCCCGATATAGATTAGTGATTTAAGGTCTAAGGTTGTAA
196 ATAGTATTCAGGCACCAATAGATTGGCCCCGATATAGATTAGTGATTTAAGGTCTAAGGTTGTAA
*
505908 AGGTTAGGTACAAACGTCTCTTTATATAGTAAGAGCATATTGAGCAATGCATGTAAAAATAAATT
261 AGGTTAGGTACAAACGTCTCTTTATATAGGAAGAGCATATTGAGCAATGCATGTAAAAATAAATT
* *
505973 AATTACAAAAATGGCATTCGCATGTCAATTTTTGAATTTCCAAATCCTTTTTAATCCATTGCTTT
326 AATTACAAAAATGGCATTCGCAAGTCAATTTTTGAATTTCCAAATCCTTTTTAATCCATGGCTTT
*
506038 AGCGAGCCTTGGAACATCATTCATAGGTCATTCATGTATGTTTTAAACCTTTATGCATAGGCATT
391 AGCGAGCCTTGGAACATCATTCATAGGTCATTCATGTATGTTTTAAACCTTTATGCATAGGCATC
* *
506103 ATTCATCTTTTTTACACCATCATTCTTTGAAATATCTAGATACCTCAAAATAGACCTCCCCTGCA
456 ATTCATATTTTTTACACCATCATTCTTTGAAATATCTAGATACCCCAAAATAGACCTCCCCTGCA
*
506168 TCATCCTAAGAATTAGAAGGCATTAAAATCTTGAATTATAAGCTATAGAGGCTTGTTGCAAGGCT
521 TCATCCTAAGAATTAGAAGGCATTAAAATCTTGAATTATAAGCCATAGAGGCTTGTTGCAAGGCT
506233 TATAAAATCCTTAAAAAAAATTTAGAT
586 TATAAAATCCTTAAAAAAAATTTAGAT
506260 AAAACAGTGCCATAGAAGTTTGAAATTGAGGTACTAATTAATAGGGAATCTAGTTAGAAATCAGT
1 AAAACAGTGCCATAGAAGTTTGAAATTGAGGTACTAATTAATAGGGAATCTAGTTAGAAATCAGT
506325 CAATGTTGATCTCAGAGGTAAATCATTTAACCTATAATGGAAAATGTTATGCTTTAATCATCCCT
66 CAATGTTGATCTCAGAGGTAAATCATTTAACCTATAATGGAAAATGTTATGCTTTAATCATCCCT
* *
506390 TTGAAGTCGTAAAAAAGGTGTACAAACAACTTTTGTATAGGAATCTTTATTTTCCCATAAATCGC
131 TTGAAGTCGTAAAAAAGGTGTACAAACAACTTTTGTATAGGAATCTTCATTTTCCCATAAACCGC
* *
506455 ATAGTATTTAGGCACCAATAGATTGGCCCCGATATGGATTAGTGATTTAAGGTCTAAGGTTGTAA
196 ATAGTATTCAGGCACCAATAGATTGGCCCCGATATAGATTAGTGATTTAAGGTCTAAGGTTGTAA
* * *
506520 AGGTTGGGTACAAACGTCTCTTTATATTGGAGGAGCATATTGAGCAATGCATGTAAAAATAAATT
261 AGGTTAGGTACAAACGTCTCTTTATATAGGAAGAGCATATTGAGCAATGCATGTAAAAATAAATT
* * **
506585 AATTACAAAAATGGCATTCGCAAGTCAATTTTTGAATTTTCGAATCCTTTTT-ATCTGTGGCTTT
326 AATTACAAAAATGGCATTCGCAAGTCAATTTTTGAATTTCCAAATCCTTTTTAATCCATGGCTTT
* * *
506649 AGCGAGCCTTGGATCATCATTCGTAGGTCATTTATGTATGTTTTAAACCTTTATGCATAGGCATC
391 AGCGAGCCTTGGAACATCATTCATAGGTCATTCATGTATGTTTTAAACCTTTATGCATAGGCATC
506714 ATTCATATTTTTTACACCATCATTCTTTGAAATATCTAGATACCCCAAAATAGACCTCCCCTGCA
456 ATTCATATTTTTTACACCATCATTCTTTGAAATATCTAGATACCCCAAAATAGACCTCCCCTGCA
*
506779 TCATCCTAAGAATTAGAAGGCATTAAAATCTTGAATTATAAGTCCATAGTGGCTCT-TTGCAAGG
521 TCATCCTAAGAATTAGAAGGCATTAAAATCTTGAATTATAAG-CCATAGAGGCT-TGTTGCAAGG
506843 CTTATAA
584 CTTATAA
506850 GTCCAGCGGG
Statistics
Matches: 562, Mismatches: 26, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
611 175 0.31
612 386 0.69
613 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (612 bp):
AAAACAGTGCCATAGAAGTTTGAAATTGAGGTACTAATTAATAGGGAATCTAGTTAGAAATCAGT
CAATGTTGATCTCAGAGGTAAATCATTTAACCTATAATGGAAAATGTTATGCTTTAATCATCCCT
TTGAAGTCGTAAAAAAGGTGTACAAACAACTTTTGTATAGGAATCTTCATTTTCCCATAAACCGC
ATAGTATTCAGGCACCAATAGATTGGCCCCGATATAGATTAGTGATTTAAGGTCTAAGGTTGTAA
AGGTTAGGTACAAACGTCTCTTTATATAGGAAGAGCATATTGAGCAATGCATGTAAAAATAAATT
AATTACAAAAATGGCATTCGCAAGTCAATTTTTGAATTTCCAAATCCTTTTTAATCCATGGCTTT
AGCGAGCCTTGGAACATCATTCATAGGTCATTCATGTATGTTTTAAACCTTTATGCATAGGCATC
ATTCATATTTTTTACACCATCATTCTTTGAAATATCTAGATACCCCAAAATAGACCTCCCCTGCA
TCATCCTAAGAATTAGAAGGCATTAAAATCTTGAATTATAAGCCATAGAGGCTTGTTGCAAGGCT
TATAAAATCCTTAAAAAAAATTTAGAT
Found at i:508014 original size:29 final size:31
Alignment explanation
Indices: 507982--508068 Score: 76
Period size: 31 Copynumber: 2.9 Consensus size: 31
507972 AAAAATCAAA
*
507982 TTATTA-AATTATTATTTTTAAATAAATT-T
1 TTATTAGAATTATTATTTATAAATAAATTAT
* * *
508011 TTATTATAA-TATTTATTTCT-AATATATTTAT
1 TTATTAGAATTA-TTATTTATAAATA-AATTAT
508042 TTATTAGAATCTA-TATTTATAAATAAA
1 TTATTAGAAT-TATTATTTATAAATAAA
508069 ATTAATTTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
29 12 0.26
30 12 0.26
31 16 0.35
32 4 0.09
33 2 0.04
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (31 bp):
TTATTAGAATTATTATTTATAAATAAATTAT
Found at i:509144 original size:15 final size:16
Alignment explanation
Indices: 509112--509146 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
509102 TCGGGTTCTC
509112 TTGGGTTTAGGCTTTT
1 TTGGGTTTAGGCTTTT
* *
509128 TTGGGTTTGGGTTTTT
1 TTGGGTTTAGGCTTTT
509144 TTG
1 TTG
509147 AGCTCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.34, T:0.60
Consensus pattern (16 bp):
TTGGGTTTAGGCTTTT
Found at i:512164 original size:23 final size:23
Alignment explanation
Indices: 512104--512164 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
512094 TTATATTATT
*
512104 TTTATATATTTATATAAAAATTTAA
1 TTTA-ATA-TTATTTAAAAATTTAA
* * *
512129 TTTGTATACTATTTAAAAATTTTA
1 TTT-AATATTATTTAAAAATTTAA
512153 TTTAATATTATT
1 TTTAATATTATT
512165 ATGTAAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
23 7 0.24
24 16 0.55
25 6 0.21
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTAATATTATTTAAAAATTTAA
Found at i:512775 original size:24 final size:26
Alignment explanation
Indices: 512730--512778 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
512720 AAAATATGAT
512730 AGTTTTAATATTTATTAGAATTTTTA
1 AGTTTTAATATTTATTAGAATTTTTA
512756 AGTTTT-ATA-TTATT-GAAATTTTT
1 AGTTTTAATATTTATTAG-AATTTTT
512779 TTACTTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 1 0.05
24 12 0.55
25 3 0.14
26 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (26 bp):
AGTTTTAATATTTATTAGAATTTTTA
Found at i:515790 original size:2 final size:2
Alignment explanation
Indices: 515783--515808 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
515773 AGAAGACGAA
515783 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
515809 TTTCTTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:517880 original size:13 final size:13
Alignment explanation
Indices: 517858--517888 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
517848 TTTAATTTTT
*
517858 TTTATCATTGATA
1 TTTATAATTGATA
517871 TTTATAATTGATA
1 TTTATAATTGATA
517884 TTTAT
1 TTTAT
517889 TATAATTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.58
Consensus pattern (13 bp):
TTTATAATTGATA
Found at i:518366 original size:2 final size:2
Alignment explanation
Indices: 518359--518394 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
518349 AGCTGTTGTA
518359 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
518395 GGTTTTATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:518465 original size:15 final size:16
Alignment explanation
Indices: 518447--518477 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
518437 TATAATTTTA
518447 TAAAAAA-TAAATATT
1 TAAAAAATTAAATATT
518462 TAAAAAATTAAATATT
1 TAAAAAATTAAATATT
518478 AAATTTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAAAATTAAATATT
Found at i:518654 original size:18 final size:17
Alignment explanation
Indices: 518610--518657 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
518600 ATATACGTAA
518610 ATAAAATAT-TAAATAT
1 ATAAAATATATAAATAT
*
518626 -TAAATAAATATAAATCAT
1 ATAAA-ATATATAAAT-AT
518644 ATAAAATATATAAA
1 ATAAAATATATAAA
518658 ATTAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.15
16 3 0.12
17 5 0.19
18 10 0.38
19 4 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAAATATATAAATAT
Found at i:518668 original size:18 final size:20
Alignment explanation
Indices: 518622--518668 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
518612 AAAATATTAA
518622 ATATTAAATAAATATAAATC
1 ATATTAAATAAATATAAATC
* * *
518642 ATATAAAATATATA-AAATT
1 ATATTAAATAAATATAAATC
518661 A-ATTAAAT
1 ATATTAAAT
518669 TTCTTTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 6 0.26
19 5 0.22
20 12 0.52
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATTAAATAAATATAAATC
Found at i:520266 original size:21 final size:21
Alignment explanation
Indices: 520211--520257 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
520201 AAGGTGATAG
520211 ATTTTCATTGAAAATAAATAA
1 ATTTTCATTGAAAATAAATAA
520232 ATTTTCATTGAAAATAAATAA
1 ATTTTCATTGAAAATAAATAA
520253 ATTTT
1 ATTTT
520258 TGTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (21 bp):
ATTTTCATTGAAAATAAATAA
Found at i:520657 original size:2 final size:2
Alignment explanation
Indices: 520650--520686 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
520640 CATACGTGCG
*
520650 TA TA TA TA TA TA TA TA TA TA TA TA -A AA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
520687 TTTTTAAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:521504 original size:17 final size:17
Alignment explanation
Indices: 521482--521540 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
521472 CGAACGAGTC
521482 TAATTTTAATTTATAAA
1 TAATTTTAATTTATAAA
521499 TAA-TTTAA---ATAAA
1 TAATTTTAATTTATAAA
*
521512 TGTAATTTTGATTTATAAA
1 --TAATTTTAATTTATAAA
521531 TAATTTTAAT
1 TAATTTTAAT
521541 AACGACTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
13 5 0.15
15 3 0.09
16 9 0.26
17 12 0.35
19 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TAATTTTAATTTATAAA
Found at i:521519 original size:32 final size:32
Alignment explanation
Indices: 521482--521542 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
521472 CGAACGAGTC
521482 TAATTTTAATTTATAAATAATTTAAATAAATG
1 TAATTTTAATTTATAAATAATTTAAATAAATG
* *
521514 TAATTTTGATTTATAAATAATTTTAATAA
1 TAATTTTAATTTATAAATAATTTAAATAA
521543 CGACTTAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (32 bp):
TAATTTTAATTTATAAATAATTTAAATAAATG
Found at i:522363 original size:77 final size:77
Alignment explanation
Indices: 522254--522420 Score: 201
Period size: 77 Copynumber: 2.2 Consensus size: 77
522244 ATGAATGATG
* * * *
522254 ATGATTAGTGTAAGTTTAATTATCATTTATAAATATGATTTTCATAATTCATAAA-TAAATTATA
1 ATGATTAGTGTAAATTTAATCATCATTCATAAATATAATTTTCATAATTCATAAACTAAATTA-A
522318 TATATAAATAGTA
65 TATATAAATAGTA
* * * **
522331 ATGATTAGTGTAAATTTAATCATTATTCATAAATATAATTTTTATAATTTATAAACGTATCTTAA
1 ATGATTAGTGTAAATTTAATCATCATTCATAAATATAATTTTCATAATTCATAAAC-TAAATTAA
* *
522396 TATATAAATGGTG
65 TATATAAATAGTA
*
522409 ATGATTACTGTA
1 ATGATTAGTGTA
522421 CTGAAATAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
77 48 0.63
78 23 0.30
79 5 0.07
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (77 bp):
ATGATTAGTGTAAATTTAATCATCATTCATAAATATAATTTTCATAATTCATAAACTAAATTAAT
ATATAAATAGTA
Found at i:530529 original size:156 final size:157
Alignment explanation
Indices: 530191--530671 Score: 559
Period size: 156 Copynumber: 3.1 Consensus size: 157
530181 AAGATCAAGA
* * * * * * * * *
530191 AAAATTACAAAAATACCCCTA-AGGGATACCTTCGACATAGAAATA-CGCGATACCCCTAAAGGA
1 AAAATTACGAAAATACCCCTACAAGTATACCCTCGACGTAAAAATATCCCGACAACCCTAAAGGA
* * * * *
530254 CTTCAAAAGGA-TAGAAAT-GGGATGAACCTATCCTAAATGCCTACCTTCGGCATAAAAGCAGAC
66 CTT-AAAAAGACTAGAGATAGGGATGAACCTATCCTAAATGCCCACCTTCGGCAAAAAAGCAAAC
** *
530317 CCGGTGATGACTTAGGAGTTGGTTCTAG
130 CCGGTGACAACCTAGGAGTTGGTTCTAG
** * *** * *
530345 AAAATTACGAAAATGTCCTTATGGGTATACCTTCGACGTAAAAGTATCCC-AGCAACCCTAAAGG
1 AAAATTACGAAAATACCCCTACAAGTATACCCTCGACGTAAAAATATCCCGA-CAACCCTAAAGG
* *
530409 ACTTAAAAATACTAG-G-TAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCAAAAAAGTAAA
65 ACTTAAAAAGACTAGAGAT-AGGGATGAACCTATCCTAAATGCCCACCTTCGGCAAAAAAGCAAA
*
530472 CCCGATGACAACCTAGGAGTTGGTTCTAG
129 CCCGGTGACAACCTAGGAGTTGGTTCTAG
*
530501 AAAATTATGAAAATACCCCTACAAGTATACCCTCGACGTAAAAATATCCCGACAACCCTAAAGGA
1 AAAATTACGAAAATACCCCTACAAGTATACCCTCGACGTAAAAATATCCCGACAACCCTAAAGGA
* * *
530566 CTTAAAAAGACTAGAGATA-GGATGAACCTATCCTAAATGTCCACATTTGGCAAAAAAGCAAACC
66 CTTAAAAAGACTAGAGATAGGGATGAACCTATCCTAAATGCCCACCTTCGGCAAAAAAGCAAACC
*
530630 CGGTGACAACCTAGGAGTT-ATTCTA-
131 CGGTGACAACCTAGGAGTTGGTTCTAG
530655 AGAAATTACGAAAATAC
1 A-AAATTACGAAAATAC
530672 TTCTAGGGGA
Statistics
Matches: 277, Mismatches: 40, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
154 19 0.07
155 44 0.16
156 210 0.76
157 3 0.01
158 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (157 bp):
AAAATTACGAAAATACCCCTACAAGTATACCCTCGACGTAAAAATATCCCGACAACCCTAAAGGA
CTTAAAAAGACTAGAGATAGGGATGAACCTATCCTAAATGCCCACCTTCGGCAAAAAAGCAAACC
CGGTGACAACCTAGGAGTTGGTTCTAG
Found at i:531121 original size:156 final size:155
Alignment explanation
Indices: 530890--531177 Score: 355
Period size: 156 Copynumber: 1.9 Consensus size: 155
530880 GAATTATAGA
* * * * *
530890 GGGTAAACCTATCCTAAATGCCCACATTTGGCATGAAAGCGGACCAGGTGATAACCTAAGAATTG
1 GGGTAAACCTATCCTAAATACCCACATTTGACATAAAAGCAGACCAGGTGACAACCTAAGAATTG
* * * *
530955 GTTCTAAAAAATTA-CAAGAATGCCCCTAAGGGATATATTTGACGTA-AAGGTATCTTGGTACCC
66 GTCCTAAAAAATTATCAA-AATACCCCTAAGGGATATATTCGACGTAGAA-GTA-CTTGATACCC
531018 CTAAAAGACTTTAAAATGACTATAAAAG
128 CTAAAAGACTTTAAAATGACTATAAAAG
* * * * * * **
531046 GGGTGAACCTATCCTAAATACCTACCTTTGACATAAAAGTAGACCCGGTGACAACTTAAGTGTTG
1 GGGTAAACCTATCCTAAATACCCACATTTGACATAAAAGCAGACCAGGTGACAACCTAAGAATTG
* * *
531111 GTCCTAAAAAATTATGAAAATACCCCTAGGGGATATCTTCGACGTAGAAGTACTTGATACCCCTA
66 GTCCTAAAAAATTATCAAAATACCCCTAAGGGATATATTCGACGTAGAAGTACTTGATACCCCTA
531176 AA
131 AA
531178 GGTCTTAAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
155 14 0.13
156 92 0.84
157 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (155 bp):
GGGTAAACCTATCCTAAATACCCACATTTGACATAAAAGCAGACCAGGTGACAACCTAAGAATTG
GTCCTAAAAAATTATCAAAATACCCCTAAGGGATATATTCGACGTAGAAGTACTTGATACCCCTA
AAAGACTTTAAAATGACTATAAAAG
Found at i:531563 original size:157 final size:157
Alignment explanation
Indices: 531277--531563 Score: 432
Period size: 157 Copynumber: 1.8 Consensus size: 157
531267 GTGCCCGAGA
* * *
531277 AAAAACCAATGGATACGAAAAGAATTTTAATGTTTCTATACCCTTACGGAAGACCATAAGAATAA
1 AAAAACCAAGGGATACGAAAAGAATTTTAATATTTCTATACCCTTACGGAAAACCATAAGAATAA
* *
531342 TAGAAATATCACTTGATGGGTAGAAAAAGACCATTTTACCCGTAAAATATAAATATGTGGCTAAT
66 TAGAAATATCACTTGATGGGTAGAAAAAGACCATTCTACCCGTAAAATATAAAAATGTGGCTAAT
531407 TTTGAAAATTACATTTCATATTCGACG
131 TTTGAAAATTACATTTCATATTCGACG
** * *
531434 AAAAACCAAGGGATACG-AAAGTTTTTTAATATTTCTATGCCCTTACGGAAAACCGTAAGAATAA
1 AAAAACCAAGGGATACGAAAAGAATTTTAATATTTCTATACCCTTACGGAAAACCATAAGAATAA
* * * * *
531498 TAGAAATATCACTTGAATGGGTAGGAAAAGACCATTCTATCCTTAAAATATAAAAATTTGTCTAA
66 TAGAAATATCACTTG-ATGGGTAGAAAAAGACCATTCTACCCGTAAAATATAAAAATGTGGCTAA
531563 T
130 T
531564 GGTATAAACT
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
156 56 0.49
157 59 0.51
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (157 bp):
AAAAACCAAGGGATACGAAAAGAATTTTAATATTTCTATACCCTTACGGAAAACCATAAGAATAA
TAGAAATATCACTTGATGGGTAGAAAAAGACCATTCTACCCGTAAAATATAAAAATGTGGCTAAT
TTTGAAAATTACATTTCATATTCGACG
Found at i:531793 original size:195 final size:195
Alignment explanation
Indices: 531404--531794 Score: 441
Period size: 193 Copynumber: 2.0 Consensus size: 195
531394 ATATGTGGCT
* **
531404 AATTTTGAAAATTACATTTCATATTCGACGAAAAACCAAGGGATACGAAAGTTTTTTAATATTTC
1 AATTTTGAAAATTACATTTCATACTCGACGAAAAACCAAGGGATACGAAAAATTTTTAATA-TTC
* * * ** *
531469 TATGCCCTTACGGAAAACCGTAAGAATAATAGAAATATCACTTGAATGGGTAGGAAAAGACCATT
65 TATACCCTTACGGAAAACCATAAAAATAATAGAAATATCACTTGAAAAGGTAGAAAAAGACCATT
* ** ** * *
531534 CTATCCTTAAAATATAAAAATTTGTCTAATGGTATAAACTTTCCTAAGTTTGCAATCTAGTCCTT
130 CTATCCTTAAAATATAAAAATCTACCTAATGACACAAACTTTCCTAAGTTTACAATCTAGTCCTT
531599 A
195 A
* * * *
531600 AATTTTGAAATTTGCATTTCATAC-CTGACGGAAAACCATGGGATAC-AAAAATTTTTAATA-TC
1 AATTTTGAAAATTACATTTCATACTC-GACGAAAAACCAAGGGATACGAAAAATTTTTAATATTC
* * * *
531662 TATACCCTTATGGAAGACCATAAAAATAATAGAAATATTATTTGAAAAGGT-GAAAAAGACCATT
65 TATACCCTTACGGAAAACCATAAAAATAATAGAAATATCACTTGAAAAGGTAGAAAAAGACCATT
* * * *
531726 TTATCCTTGAAAA-ATTAAAAATCTACCTAATAGACACCAAACTTTCTTAAGTTTACGATTTAGT
130 CTATCCTT-AAAATA-TAAAAATCTACCTAAT-GACA-CAAACTTTCCTAAGTTTACAATCTAGT
531790 CCTTA
191 CCTTA
531795 CATAAAAAAA
Statistics
Matches: 162, Mismatches: 28, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
192 20 0.12
193 61 0.38
194 2 0.01
195 40 0.25
196 39 0.24
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (195 bp):
AATTTTGAAAATTACATTTCATACTCGACGAAAAACCAAGGGATACGAAAAATTTTTAATATTCT
ATACCCTTACGGAAAACCATAAAAATAATAGAAATATCACTTGAAAAGGTAGAAAAAGACCATTC
TATCCTTAAAATATAAAAATCTACCTAATGACACAAACTTTCCTAAGTTTACAATCTAGTCCTTA
Found at i:533673 original size:20 final size:21
Alignment explanation
Indices: 533648--533701 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
533638 TCACAATTTA
* *
533648 TATCGATACATTCT-TCATTG
1 TATCGATATATTCTCTCAATG
*
533668 TATCGAAATATT-TCTCAATG
1 TATCGATATATTCTCTCAATG
533688 TATCGATATATTCT
1 TATCGATATATTCT
533702 GGGTTTTCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.44
Consensus pattern (21 bp):
TATCGATATATTCTCTCAATG
Found at i:536040 original size:79 final size:79
Alignment explanation
Indices: 535946--536188 Score: 328
Period size: 79 Copynumber: 3.1 Consensus size: 79
535936 TCATTCATGT
* * * * *
535946 TTTTATTTTTAAAATA-TCGATTTTTTACCATCGGGGATAGTCCAATCTCGTTATTTTCGAGGGG
1 TTTTATTTTTAAAATACT-GATTTTTCATCATCGGGGATACTCCAACCTCATTATTTTCGAGGGG
*
536010 ATACTCTAACCCCGG
65 ATACTCTAACCCCGA
* * * *
536025 TTTTATTTTTGAAATACTGATATTTCATAATCGGGGATACTCCAACCTTATTA-TTTCTGAGGGG
1 TTTTATTTTTAAAATACTGATTTTTCATCATCGGGGATACTCCAACCTCATTATTTTC-GAGGGG
536089 ATACTCTAACCCCGA
65 ATACTCTAACCCCGA
* *
536104 TTTTATTTCTAAAATACTGATTTTTCATCATCGGGGATACTCCAACCCCATTATTTTCGAGGGGA
1 TTTTATTTTTAAAATACTGATTTTTCATCATCGGGGATACTCCAACCTCATTATTTTCGAGGGGA
* *
536169 TACTCCAACCCCGT
66 TACTCTAACCCCGA
536183 TTTTAT
1 TTTTAT
536189 CTCCAAAATA
Statistics
Matches: 143, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
78 4 0.03
79 134 0.94
80 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.39
Consensus pattern (79 bp):
TTTTATTTTTAAAATACTGATTTTTCATCATCGGGGATACTCCAACCTCATTATTTTCGAGGGGA
TACTCTAACCCCGA
Found at i:536224 original size:79 final size:78
Alignment explanation
Indices: 536000--536229 Score: 207
Period size: 79 Copynumber: 2.9 Consensus size: 78
535990 ATCTCGTTAT
* * * *** * * * *
536000 TTTC-GAGGGGATACTCTAACCCCGGTTTTATTTTTGAAATACTGATATTTCATAATCGGGGATA
1 TTTCTGAGGGGATACTCCAACCCCGATTTTATCTCCAAAATACTAATTTTTCA-CATCGAGGATA
**
536064 CTCCAACCTTATTA
65 CTCCAACCCCATTA
* * * * *
536078 TTTCTGAGGGGATACTCTAACCCCGATTTTATTTCTAAAATACTGATTTTTCATCATCGGGGATA
1 TTTCTGAGGGGATACTCCAACCCCGATTTTATCTCCAAAATACTAATTTTTCA-CATCGAGGATA
536143 CTCCAACCCCATTA
65 CTCCAACCCCATTA
* *
536157 TTT-TCGAGGGGATACTCCAACCCCGTTTTTATCTCCAAAATATTAAATTTTTCA-AT-GAGGAT
1 TTTCT-GAGGGGATACTCCAACCCCGATTTTATCTCCAAAATACT-AATTTTTCACATCGAGGA-
536219 GTACTCCAACC
63 -TACTCCAACC
536230 GCGTATCCTA
Statistics
Matches: 133, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 4 0.03
78 7 0.05
79 114 0.86
80 8 0.06
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (78 bp):
TTTCTGAGGGGATACTCCAACCCCGATTTTATCTCCAAAATACTAATTTTTCACATCGAGGATAC
TCCAACCCCATTA
Found at i:542150 original size:18 final size:17
Alignment explanation
Indices: 542129--542167 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
542119 TATTAATGTC
542129 ATATAAATATAAATATGA
1 ATATAAATATAAATAT-A
* *
542147 ATATAATTATAATTATA
1 ATATAAATATAAATATA
542164 ATAT
1 ATAT
542168 TTATTTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
ATATAAATATAAATATA
Found at i:731774 original size:1 final size:1
Alignment explanation
Indices: 731768--731830 Score: 117
Period size: 1 Copynumber: 63.0 Consensus size: 1
731758 TAGTAGCCCA
*
731768 CCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
731831 TCCTCCCCGT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.00, C:0.98, G:0.02, T:0.00
Consensus pattern (1 bp):
C
Found at i:735117 original size:21 final size:21
Alignment explanation
Indices: 735091--735152 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
735081 GATTTTGATA
* *
735091 TCATCATTACGATA-TTCAATC
1 TCATCACTACGATACCT-AATC
735112 TCATCACTACGATACCTAATC
1 TCATCACTACGATACCTAATC
* *
735133 TCATCACTACGGTAACTAAT
1 TCATCACTACGATACCTAAT
735153 TTCACTGGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 35 0.97
22 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.32
Consensus pattern (21 bp):
TCATCACTACGATACCTAATC
Found at i:735828 original size:30 final size:30
Alignment explanation
Indices: 735792--735863 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
735782 TTTCAGAATT
735792 TGTATCGATACATTCTAAGCTTTACCTAGA
1 TGTATCGATACATTCTAAGCTTTACCTAGA
* *
735822 TGTATCGATACATTCTAGGTTTTACCTAGA
1 TGTATCGATACATTCTAAGCTTTACCTAGA
735852 TGTATCGATACA
1 TGTATCGATACA
735864 CTCTTCATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (30 bp):
TGTATCGATACATTCTAAGCTTTACCTAGA
Found at i:735929 original size:20 final size:20
Alignment explanation
Indices: 735901--735955 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
735891 TTTTATCCAG
735901 ATGTATCGATACATTTCTCA
1 ATGTATCGATACATTTCTCA
*
735921 ATTTATCGATACATTTCTCA
1 ATGTATCGATACATTTCTCA
735941 ATGTATCGATACATT
1 ATGTATCGATACATT
735956 CAAGCATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTCTCA
Found at i:735933 original size:50 final size:50
Alignment explanation
Indices: 735824--735935 Score: 149
Period size: 50 Copynumber: 2.2 Consensus size: 50
735814 TACCTAGATG
735824 TATCGATACATTCTAGGTTTTACCTAGATGTATCGATACACTCTTCATTA
1 TATCGATACATTCTAGGTTTTACCTAGATGTATCGATACACTCTTCATTA
* * *
735874 TATCAATACATTCTGGGTTTTATCC-AGATGTATCGATACA-TTTCTCAATT-
1 TATCGATACATTCTAGGTTTTA-CCTAGATGTATCGATACACTCT-TC-ATTA
735924 TATCGATACATT
1 TATCGATACATT
735936 TCTCAATGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
49 2 0.04
50 48 0.87
51 5 0.09
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.41
Consensus pattern (50 bp):
TATCGATACATTCTAGGTTTTACCTAGATGTATCGATACACTCTTCATTA
Found at i:740222 original size:52 final size:52
Alignment explanation
Indices: 740074--740202 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
740064 CAAAATATGA
740074 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
740126 AAATTTGCCTGCACGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
740178 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
740203 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:740229 original size:13 final size:13
Alignment explanation
Indices: 740211--740235 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
740201 CAAAGATCAG
740211 TGTATCGATACAA
1 TGTATCGATACAA
740224 TGTATCGATACA
1 TGTATCGATACA
740236 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:740302 original size:19 final size:18
Alignment explanation
Indices: 740278--740375 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
740268 TAGCTTAAAT
740278 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
740297 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
740310 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
740329 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
740342 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
740362 TGTATCGATACAAA
1 TGTATCGATACAAA
740376 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:740315 original size:13 final size:13
Alignment explanation
Indices: 740297--740353 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
740287 ACAAAACTTA
740297 TGTATCGATACAT
1 TGTATCGATACAT
740310 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
740328 ATGTATCGATACAT
1 -TGTATCGATACAT
740342 TGTATCGATACA
1 TGTATCGATACA
740354 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:740317 original size:32 final size:32
Alignment explanation
Indices: 740276--740373 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
740266 AGTAGCTTAA
*
740276 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
740308 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
740340 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
740373 A
1 A
740374 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:741217 original size:67 final size:68
Alignment explanation
Indices: 741095--741221 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
741085 ATTGGGTTTT
* * *
741095 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
741160 AGA
66 AGA
* * * *
741163 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
741222 GAAAAAAGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:741270 original size:55 final size:52
Alignment explanation
Indices: 741171--741725 Score: 244
Period size: 49 Copynumber: 11.6 Consensus size: 52
741161 GAAAAGTGAT
* * * * * * **
741171 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAA
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATG-G--A
* *
741226 AAAGATGTCAATGTGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * *
741278 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * * *
741325 ---G-TGTCAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * *
741370 GAAGGTGCCAATATGCTGA-TCAAAGACCAGCGATATT-AGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTC-AAGACCAGCTACATTGA-ACTTAAAGATGGA
* * *
741417 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * * * *
741462 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * * *
741512 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * *
741558 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * *
741604 -AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* * * *
741650 ---G-TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
* *
741696 -AAGGTGCCAATATGCTGATTCAAGGCCAGC
1 AAAGATGCCAATATGCTGATTCAAGACCAGC
741726 GATATTGGGC
Statistics
Matches: 422, Mismatches: 45, Indels: 72
0.78 0.08 0.13
Matches are distributed among these distances:
43 135 0.32
44 14 0.03
45 4 0.01
46 4 0.01
47 3 0.01
48 12 0.03
49 168 0.40
50 1 0.00
51 2 0.00
52 38 0.09
54 1 0.00
55 40 0.09
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGATGCCAATATGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGA
Found at i:741518 original size:141 final size:141
Alignment explanation
Indices: 741278--741649 Score: 569
Period size: 141 Copynumber: 2.7 Consensus size: 141
741268 TAAAGATGGA
* * * *
741278 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGGTGTCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
* *
741337 TGATTTAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA-TCAAAGACCAGC
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC-AAGACCAGC
741401 GATATTAGACTT
130 GATATTAGACTT
741413 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
* * * * *
741478 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGACCAGCG
*
741543 ATATTGGACTT
131 ATATTAGACTT
*
741554 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
741619 TGATTCAAGGCCAGCTATATTGGACTTAAAG
66 TGATTCAAGGCCAGCTATATTGGACTTAAAG
741650 GTGCCAATGT
Statistics
Matches: 216, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
135 41 0.19
140 1 0.00
141 172 0.80
142 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (141 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGACCAGCG
ATATTAGACTT
Found at i:741579 original size:21 final size:21
Alignment explanation
Indices: 741512--741579 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
741502 CTTAAAGATG
741512 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* * *
741533 AAGGCCAGCTATAT-TG--GACTTA
1 AAGG--TGCCA-ATGTGCTGA-TTC
741555 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
741576 AAGG
1 AAGG
741580 CCAGCTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:741686 original size:233 final size:235
Alignment explanation
Indices: 741234--741738 Score: 836
Period size: 233 Copynumber: 2.2 Consensus size: 235
741224 AAAAAGATGT
* * * * *
741234 CAATGTGCTGATTCAAGACCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGG-AAAGGTGCCAATATGCTGATT
* *
741299 CAAGGCCAGCTATATTGGACTTAAAGGTGTCAATGTGCTGATTTAAGGCCAGCTACATTGGACTT
65 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
741364 AAAGAAGAAGGTGCCAATATGCTGATCAAAGACCAGCGATATTAGACTTAAAGGTGCCAATGTGC
130 AAAGAAGAAGGTGCCAATATGCTGATCAAAGACCAGCGATATTAGACTTAAAGGTGCCAATGTGC
741429 TGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
195 TGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
*
741470 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G-AAGGTGCCAATGTGCTGATTC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGAAAGGTGCCAATATGCTGATTC
741533 AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
66 AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* * * *
741598 AAGATGAAGGTGCCAATATGCTGATTC-AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
131 AAGAAGAAGGTGCCAATATGCTGA-TCAAAGACCAGCGATATTAGACTTAAAGGTGCCAATGTGC
* *
741662 TGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGC
195 TGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
*
741703 CAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
741739 GAAGGGTTGC
Statistics
Matches: 253, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
233 214 0.85
234 2 0.01
235 1 0.00
236 36 0.14
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (235 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGAAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
AAGAAGAAGGTGCCAATATGCTGATCAAAGACCAGCGATATTAGACTTAAAGGTGCCAATGTGCT
GATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
Found at i:741731 original size:92 final size:93
Alignment explanation
Indices: 741279--741743 Score: 546
Period size: 92 Copynumber: 5.0 Consensus size: 93
741269 AAAGATGGAA
* * * *
741279 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGTCAATGTGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
* *
741338 GATTTAAGGCCAGCTACATTGGACTTAAAGAAG
66 GATTCAAGGCCAGCTATATTGGACTT-----AG
* * * * * *
741371 AAGGTGCCAATATGCTGA-TCAAAGACCAGCGATATTAGACTT----A--AAGGTGCCAATGTGC
1 AAGGTGCCAATGTGCTGATTC-AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
741429 TGATTCAAGGCCAGCTACATTGGACTTAAAGAAG
65 TGATTCAAGGCCAGCTATATTGGACTT-----AG
* * * *
741463 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
741528 GATTCAAGGCCAGCTATATTGGACTTA-
66 GATTCAAGGCCAGCTATATTGGACTTAG
741555 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
741620 GATTCAAGGCCAGCTATATTGGACTTA-
66 GATTCAAGGCCAGCTATATTGGACTTAG
*
741647 AAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
* *
741712 GATTCAAGGCCAGCGATATTGGGCTTAG
66 GATTCAAGGCCAGCTATATTGGACTTAG
741740 AAGG
1 AAGG
741744 GTTGCCACCG
Statistics
Matches: 349, Mismatches: 15, Indels: 17
0.92 0.04 0.04
Matches are distributed among these distances:
91 2 0.01
92 298 0.85
93 7 0.02
96 1 0.00
98 41 0.12
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (93 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
GATTCAAGGCCAGCTATATTGGACTTAG
Found at i:741733 original size:141 final size:136
Alignment explanation
Indices: 741278--741725 Score: 543
Period size: 141 Copynumber: 3.2 Consensus size: 136
741268 TAAAGATGGA
* * *
741278 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-AAGGTGTCAATGTGCT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCT
* * * *
741338 GATTTAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA-TCAAAGACCAGCG
66 GATTCAAGGCCAGCTATATTGGACTT----AAGAAGGTGCCAATGTGCTGATTC-AAGACCAGCT
* *
741402 ATATTAGACTT
126 ACATTGGACTT
*
741413 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-AGAAGGTGCCAATATGC
* *
741478 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
65 TGATTCAAGGCCAGCTATATTGGACTT--A-A-GAAGGTGCCAATGTGCTGATTCAAGACCAGCT
*
741543 ATATTGGACTT
126 ACATTGGACTT
*
741554 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-GAAGGTGCCAATATGC
* *
741619 TGATTCAAGGCCAGCTATATTGGACTT-A-AAGGTGCCAATGTGCTGATTCAAGGCTAGCTACAT
65 TGATTCAAGGCCAGCTATATTGGACTTAAGAAGGTGCCAATGTGCTGATTCAAGACCAGCTACAT
741682 TGGACTT
130 TGGACTT
741689 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGC
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGC
741726 GATATTGGGC
Statistics
Matches: 281, Mismatches: 16, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
135 81 0.29
137 1 0.00
139 3 0.01
140 3 0.01
141 191 0.68
142 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (136 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCT
GATTCAAGGCCAGCTATATTGGACTTAAGAAGGTGCCAATGTGCTGATTCAAGACCAGCTACATT
GGACTT
Found at i:741782 original size:33 final size:33
Alignment explanation
Indices: 741738--741939 Score: 313
Period size: 33 Copynumber: 6.2 Consensus size: 33
741728 TATTGGGCTT
741738 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
741771 AGAATGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
741804 AGAAGGGTTGCCATCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
741837 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
741870 AGAAGGGTTGCCACCGACTTGTGT-GGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
741902 AAAAAGGTTGCCACCGACTTGTGTGAGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
741934 -GAAGGG
1 AGAAGGG
741940 GGTGCCACGG
Statistics
Matches: 155, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
31 4 0.03
32 35 0.23
33 112 0.72
34 4 0.03
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:741979 original size:33 final size:33
Alignment explanation
Indices: 741942--742168 Score: 199
Period size: 34 Copynumber: 6.8 Consensus size: 33
741932 TGGAAGGGGG
*
741942 TGCCACGGGGTTGTGGACTTAAAAGGAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
** * *
741975 TGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGG-
1 TGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAGGA
*
742009 TGCCACGGAGTTGTGGACTTAAAAAGAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
** * * *
742042 TGCCACAAAGTTGTGGGCTTTAAAAAGAAAA-AA
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAAAAGGA
* **
742075 GTACCACGGAGTTGTGGACTTTTAAGGAAAAAGG-
1 -TGCCACGGAGTTGTGGACTTAAAAGG-AAAAGGA
* ** *
742109 TGCCACGAAGTTGTGGACTTTTAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
* *
742142 GTGCCACGGAGTTGTGGGCCTAAAAGG
1 -TGCCACGGAGTTGTGGACTTAAAAGG
742169 GTGCCACGAG
Statistics
Matches: 155, Mismatches: 30, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
32 15 0.10
33 61 0.39
34 68 0.44
35 11 0.07
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
Found at i:742024 original size:67 final size:67
Alignment explanation
Indices: 741940--742168 Score: 318
Period size: 67 Copynumber: 3.4 Consensus size: 67
741930 TTTGGAAGGG
*
741940 GGTGCCACGGGGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
742005 AA
66 AA
*
742007 GGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
742072 AA
66 AA
* * ** * * * *
742074 AGTACCACGGAGTTGTGGACTTTTAAGGAAAAAGG-TGCCACGAAGTTGTGGACTTT-TAAGGAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGG-AAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAA
742137 AAA
65 AAA
* *
742140 GAGTGCCACGGAGTTGTGGGCCTAAAAGG
1 G-GTGCCACGGAGTTGTGGACTTAAAAGG
742169 GTGCCACGAG
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
66 8 0.06
67 129 0.90
68 6 0.04
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.21
Consensus pattern (67 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
AA
Found at i:742155 original size:34 final size:34
Alignment explanation
Indices: 741941--742158 Score: 223
Period size: 33 Copynumber: 6.5 Consensus size: 34
741931 TTGGAAGGGG
* *
741941 GTGCCACGGGGTTGTGGAC-TTAAAAGGAAAAG-
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
** *
741973 GATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAG-
1 G-TGCCACGGAGTTGTGGACTTT-AAAAGAAAAAGA
* *
742008 GTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGA
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
** *
742042 -TGCCACAAAGTTGTGGGCTTTAAAAAGAAAAA-A
1 GTGCCACGGAGTTGTGGACTTT-AAAAGAAAAAGA
* * *
742075 GTACCACGGAGTTGTGGACTTTTAAGGAAAAAG-
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
* * *
742108 GTGCCACGAAGTTGTGGACTTTTAAGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
742142 GTGCCACGGAGTTGTGG
1 GTGCCACGGAGTTGTGG
742159 GCCTAAAAGG
Statistics
Matches: 154, Mismatches: 24, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
32 1 0.01
33 81 0.53
34 61 0.40
35 11 0.07
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (34 bp):
GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
Found at i:742433 original size:33 final size:33
Alignment explanation
Indices: 742391--742588 Score: 303
Period size: 33 Copynumber: 6.1 Consensus size: 33
742381 ATGTTTTTGA
*
742391 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAT
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
*
742424 GGTTGCCACCAACTTGTGTGGGCTTTAGAGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
* *
742457 GGTTGCCATCGACTTGTGTGGACTTTAGAAGAA-
1 GGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAG
742490 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
* *
742523 GGTTGCCACCGACTTGTGTGGGCTTTAGAAAAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
*
742556 GGTTGCCACCGACTTGTGTGAGCTTT-G-GAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
742587 GG
1 GG
742589 GGTGCCACGG
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
31 4 0.03
32 5 0.03
33 138 0.91
34 4 0.03
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
Found at i:742678 original size:67 final size:68
Alignment explanation
Indices: 742589--742777 Score: 272
Period size: 67 Copynumber: 2.8 Consensus size: 68
742579 TTTGGAAGGG
*
742589 GGTGCCACGGGGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAG-AA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
742653 AAA
66 AAA
* *
742656 GGTGTCACGGAGTTGTGGACTTAAAAAGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
742721 AAA
66 AAA
* * ** * **
742724 AGTACCACGGAGTTGTGGACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGC
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA-TGCCACAAAGTTGTGGGC
742778 CTAAAAGGGT
Statistics
Matches: 108, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
67 59 0.55
68 33 0.31
69 16 0.15
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (68 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
AAA
Found at i:742766 original size:34 final size:34
Alignment explanation
Indices: 742590--742775 Score: 182
Period size: 34 Copynumber: 5.5 Consensus size: 34
742580 TTGGAAGGGG
* *
742590 GTGCCACGGGGTTGTGGAC-TTAAAAGGAAAAG-
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
** *
742622 GATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAG-
1 G-TGCCACGGAGTTGTGGACTTT-AAAAGAAAAAGA
* * *
742657 GTGTCACGGAGTTGTGGACTTAAAAAGAAAAGGA
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
** * *
742691 -TGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAAA
1 GTGCCACGGAGTTGTGGACTTT-AAAAGAAAAAGA
* * *
742725 GTACCACGGAGTTGTGGACTTTTAAGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
742759 GTGCCACGGAGTTGTGG
1 GTGCCACGGAGTTGTGG
742776 GCCTAAAAGG
Statistics
Matches: 122, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
32 1 0.01
33 40 0.33
34 53 0.43
35 28 0.23
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.21
Consensus pattern (34 bp):
GTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGA
Found at i:742947 original size:617 final size:625
Alignment explanation
Indices: 741777--743645 Score: 3162
Period size: 617 Copynumber: 2.9 Consensus size: 625
741767 TTAGAGAATG
741777 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTAGAAGAA
1 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTAGAAGAA
741842 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGT-GGCTTTAGAAAA
66 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA
741906 AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
131 AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
741971 AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
196 AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
742036 AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAAGTACCACGGAGTTGTGGACTTTTAAG
261 AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAG-AAAAAG-A-CA--GA-----GG----TT---
*
742101 GAAAAAGGTGCCACGAAGTTGTGGACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAA
309 ----AA---GCCACGGAGTTGTGGACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAA
742166 AGGGTGCCACGAGACGATGGGAAATGGATTCGTCCCCACATACGTTGAATCTTCCACCTACTAGC
367 AGGGTGCCACGAGACGATGGGAAATGGATTCGTCCCCACATACGTTGAATCTTCCACCTACTAGC
742231 TAGGCCTCAAATTATCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGT
432 TAGGCCTCAAATTATCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGT
*
742296 TTCAAAAATATTTCTAAAAGCTTAGAAATATGATATTACATAAAGTGCCAATATACAATAATATA
497 TTCAAAAATATTTCTAAAAGCTCAGAAATATGATATTACATAAAGTGCCAATATACAATAATATA
742361 TGGGATAATGTTATACCTATATGTTTTTGAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATG
562 TGGGATAATGTTATACCTATATGTTTTTGAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATG
*
742425 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGACTTTAGAAGAA
1 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTAGAAGAA
742490 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA
66 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA
742555 AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
131 AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
*
742620 AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGTCACGGAGTTGTGGACTTAAAAAGA
196 AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
742685 AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAG-AAAA-A-A-A-G-T-A-CCACGGAGTTGTGG
261 AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGACAGAGGTTAAGCCACGGAGTTGTGG
*
742742 ACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAAAGGGTGCCACGAGATGATGGGAAA
326 ACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAAAGGGTGCCACGAGACGATGGGAAA
* *
742807 TGGATTCGTCCCCACATACATTGAATCTTTCACCTACTAGCTAGGCCTCAAATTATCGAAAATTG
391 TGGATTCGTCCCCACATACGTTGAATCTTCCACCTACTAGCTAGGCCTCAAATTATCGAAAATTG
742872 GCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGTTTCAAAAATATTTCTAAAAGCTCA
456 GCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGTTTCAAAAATATTTCTAAAAGCTCA
742937 GAAATATGATATTACATAAAGTGCCAATATACAATAATATATGGGATAATGTTATACCTATATGT
521 GAAATATGATATTACATAAAGTGCCAATATACAATAATATATGGGATAATGTTATACCTATATGT
743002 TTTTGAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATG
586 TTTTGAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATG
* *
743042 GTTGCCACTAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAA
1 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTAGAAGAA
743107 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA
66 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA
743172 AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
131 AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
743237 AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
196 AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
743302 AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAAGTACCACGGAGTTGTGGACTTTTAAG
261 AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAG-AAAAAG-A-CA--GA-----GG----TT---
743367 GAAAAAGGTGCCACGGAGTTGTGGACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAA
309 ----AA---GCCACGGAGTTGTGGACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAA
743432 AGGGTGCCACGAGACGATGGGAAATGGATTCGTCCCCACATACGTTGAATCTTCCACCTACTAGC
367 AGGGTGCCACGAGACGATGGGAAATGGATTCGTCCCCACATACGTTGAATCTTCCACCTACTAGC
743497 TAGGCCTCAAATTATCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGT
432 TAGGCCTCAAATTATCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGT
743562 TTCAAAAATATTTCTAAAAGCTCAGAAATATGATATTACATAAAGTGCCAATATACAATAATATA
497 TTCAAAAATATTTCTAAAAGCTCAGAAATATGATATTACATAAAGTGCCAATATACAATAATATA
743627 TGGGATAATGTTATACCTA
562 TGGGATAATGTTATACCTA
743646 CAATATTACA
Statistics
Matches: 1174, Mismatches: 14, Indels: 65
0.94 0.01 0.05
Matches are distributed among these distances:
617 598 0.51
619 4 0.00
621 2 0.00
623 1 0.00
626 1 0.00
629 1 0.00
632 1 0.00
634 1 0.00
637 1 0.00
640 1 0.00
643 1 0.00
645 2 0.00
647 4 0.00
648 116 0.10
649 440 0.37
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (625 bp):
GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTAGAAGAA
GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA
AGGTTGCCACCGACTTGTGTGAGCTTTGGAAGGGGGTGCCACGGGGTTGTGGACTTAAAAGGAAA
AGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA
AAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGACAGAGGTTAAGCCACGGAGTTGTGG
ACTTTTAAGGAAAAAGAGTGCCACGGAGTTGTGGGCCTAAAAGGGTGCCACGAGACGATGGGAAA
TGGATTCGTCCCCACATACGTTGAATCTTCCACCTACTAGCTAGGCCTCAAATTATCGAAAATTG
GCCCGGACAAAATGAGGTGTCTACAATATTACTATGTTTGTTTCAAAAATATTTCTAAAAGCTCA
GAAATATGATATTACATAAAGTGCCAATATACAATAATATATGGGATAATGTTATACCTATATGT
TTTTGAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATG
Found at i:743056 original size:33 final size:33
Alignment explanation
Indices: 743008--743205 Score: 312
Period size: 33 Copynumber: 6.1 Consensus size: 33
742998 ATGTTTTTGA
*
743008 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAT
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
**
743041 GGTTGCCACTAACTTGTGTGGGCTTTAGAGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
743074 GGTTGCCACCGACTTGTGTGGGCTTTAGAAGAA-
1 GGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAG
743107 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
* *
743140 GGTTGCCACCGACTTGTGTGGGCTTTAGAAAAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
*
743173 GGTTGCCACCGACTTGTGTGAGCTTT-G-GAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
743204 GG
1 GG
743206 GGTGCCACGG
Statistics
Matches: 153, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
31 4 0.03
32 5 0.03
33 140 0.92
34 4 0.03
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAG
Found at i:743245 original size:33 final size:33
Alignment explanation
Indices: 743208--743434 Score: 208
Period size: 34 Copynumber: 6.8 Consensus size: 33
743198 TGGAAGGGGG
*
743208 TGCCACGGGGTTGTGGACTTAAAAGGAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
** * *
743241 TGCCACAAAGTTGTGGGCTTTAAAAAGAAAAAGG-
1 TGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAGGA
*
743275 TGCCACGGAGTTGTGGACTTAAAAAGAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
** * * *
743308 TGCCACAAAGTTGTGGGCTTTAAAAAGAAAA-AA
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAAAAGGA
* **
743341 GTACCACGGAGTTGTGGACTTTTAAGGAAAAAGG-
1 -TGCCACGGAGTTGTGGACTTAAAAGG-AAAAGGA
** *
743375 TGCCACGGAGTTGTGGACTTTTAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
* *
743408 GTGCCACGGAGTTGTGGGCCTAAAAGG
1 -TGCCACGGAGTTGTGGACTTAAAAGG
743435 GTGCCACGAG
Statistics
Matches: 157, Mismatches: 28, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
32 15 0.10
33 62 0.39
34 69 0.44
35 11 0.07
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.21
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA
Found at i:743290 original size:67 final size:67
Alignment explanation
Indices: 743206--743434 Score: 309
Period size: 67 Copynumber: 3.4 Consensus size: 67
743196 TTTGGAAGGG
*
743206 GGTGCCACGGGGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
743271 AA
66 AA
*
743273 GGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
743338 AA
66 AA
* * ** ** * * *
743340 AGTACCACGGAGTTGTGGACTTTTAAGGAAAAAGG-TGCCACGGAGTTGTGGACTTT-TAAGGAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGG-AAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAA
743403 AAA
65 AAA
* *
743406 GAGTGCCACGGAGTTGTGGGCCTAAAAGG
1 G-GTGCCACGGAGTTGTGGACTTAAAAGG
743435 GTGCCACGAG
Statistics
Matches: 142, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
66 8 0.06
67 128 0.90
68 6 0.04
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (67 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACAAAGTTGTGGGCTTTAAAAAGAAA
AA
Found at i:743354 original size:34 final size:34
Alignment explanation
Indices: 743206--743424 Score: 243
Period size: 33 Copynumber: 6.5 Consensus size: 34
743196 TTTGGAAGGG
* *
743206 GGTGCCACGGGGTTGTGGAC-TT-AAAAGGAAAA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
** *
743238 GGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAA
1 GG-TGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
743273 GGTGCCACGGAGTTGTGGAC-TTAAAAAG-AAAA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
** *
743305 GGATGCCACAAAGTTGTGGGCTTTAAAAAGAAAAA
1 GG-TGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
* * * *
743340 AGTACCACGGAGTTGTGGACTTT-TAAGGAAAAA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
* *
743373 GGTGCCACGGAGTTGTGGACTTT-TAAGGAAAAA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
743406 GAGTGCCACGGAGTTGTGG
1 G-GTGCCACGGAGTTGTGG
743425 GCCTAAAAGG
Statistics
Matches: 160, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
32 8 0.05
33 77 0.48
34 59 0.37
35 16 0.10
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (34 bp):
GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
Found at i:745948 original size:80 final size:77
Alignment explanation
Indices: 745800--746200 Score: 301
Period size: 79 Copynumber: 5.2 Consensus size: 77
745790 TTATTTGATG
* * * * * *
745800 TTTTTATTTCTAAAATACCAATTTTTCACAATCGGGGATACTCCAACTCC-ATTAGTTTCGAAGG
1 TTTTTATTTCCAAAACACCGATTTTTCAAAATC-GGGATACTCCAAC-CCTGTTA-TTTTG-AGG
745864 -GATACTCTAACCTCAA
62 AGATACTCTAACCTC-A
** * *
745880 TTTTTATTTTTAAAACACCGATTTTTTAAAATCAGGGATACTCTAACCCTGTTATTTCTGAGGAG
1 TTTTTATTTCCAAAACACCGATTTTTCAAAATC-GGGATACTCCAACCCTGTTATTT-TGAGGAG
*
745945 ATACTCCAACC-CTA
64 ATACTCTAACCTC-A
* * * *
745959 GTTTTATTTCCAAAACACCGA-TTTT-----TC---ATACTCCAACCTTGCTATTTTCGAGGTGA
1 TTTTTATTTCCAAAACACCGATTTTTCAAAATCGGGATACTCCAACCCTGTTATTTT-GAGGAGA
746015 TACTCTAACCTCA
65 TACTCTAACCTCA
* * * * *
746028 GTTTTATTTCCAAAACATCGATTTTCCATAATCGGAGATACTCCAACCCTGTTATTTTTGAGGGG
1 TTTTTATTTCCAAAACACCGATTTTTCAAAATCGG-GATACTCCAACCCTGTTA-TTTTGAGGAG
*
746093 ATACTCCAACC-CTA
64 ATACTCTAACCTC-A
* * * *
746107 ATTTTATTTCCAAAACACC-AATTTTCAACCATCGGGGATACTCCAACCCCGTTATTTTCGA-GA
1 TTTTTATTTCCAAAACACCGATTTTTCAA-AATC-GGGATACTCCAACCCTGTTATTTT-GAGGA
* *
746170 GGATACTCTGACCTCG
63 -GATACTCTAACCTCA
*
746186 TTTTTATCTCCAAAA
1 TTTTTATTTCCAAAA
746201 TATTAAATTT
Statistics
Matches: 261, Mismatches: 38, Indels: 45
0.76 0.11 0.13
Matches are distributed among these distances:
68 1 0.00
69 53 0.20
70 4 0.02
73 2 0.01
75 2 0.01
78 16 0.06
79 121 0.46
80 62 0.24
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (77 bp):
TTTTTATTTCCAAAACACCGATTTTTCAAAATCGGGATACTCCAACCCTGTTATTTTGAGGAGAT
ACTCTAACCTCA
Found at i:746031 original size:69 final size:69
Alignment explanation
Indices: 745917--746132 Score: 202
Period size: 69 Copynumber: 3.0 Consensus size: 69
745907 AAAATCAGGG
* *
745917 ATACTCTAACCCTGTTATTTCTGAGGAGATACTCCAACCCTAGTTTTATTTCCAAAACACCGATT
1 ATACTCCAACCCTGCTATTTCTGAGGAGATACTCCAACCCTAGTTTTATTTCCAAAACACCGATT
*
745982 TTTC
66 TTCC
* * * *
745986 ATACTCCAACCTTGCTATTT-TCGAGGTGATACTCTAA-CCTCAGTTTTATTTCCAAAACATCGA
1 ATACTCCAACCCTGCTATTTCT-GAGGAGATACTCCAACCCT-AGTTTTATTTCCAAAACACCGA
746049 TTTTCCATAATC
64 TTTT-C-----C
* * * *
746061 GGAGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCTAATTTTATTTCCAAAACACC
1 ----ATACTCCAACCCTGCTATTTCTGAGGAGATACTCCAACCCTAGTTTTATTTCCAAAACACC
*
746126 AATTTTC
62 GATTTTC
746133 AACCATCGGG
Statistics
Matches: 119, Mismatches: 14, Indels: 19
0.78 0.09 0.12
Matches are distributed among these distances:
68 4 0.03
69 55 0.46
75 1 0.01
78 1 0.01
79 54 0.45
80 4 0.03
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (69 bp):
ATACTCCAACCCTGCTATTTCTGAGGAGATACTCCAACCCTAGTTTTATTTCCAAAACACCGATT
TTCC
Found at i:746106 original size:148 final size:149
Alignment explanation
Indices: 745855--746131 Score: 407
Period size: 148 Copynumber: 1.9 Consensus size: 149
745845 ACTCCATTAG
* ** **
745855 TTTCGAAGGGATACTCTAACCTCAATTTTTATTTTTAAAACACCGATTTTTTAAAATCAGGGATA
1 TTTCGAAGGGATACTCTAACCTCAAGTTTTATTTCCAAAACACCGATTTTCCAAAATCAGGGATA
* * *
745920 CTCTAACCCTGTTATTTCTGAGGAGATACTCCAACCCTAGTTTTATTTCCAAAACACCGATTTTT
66 CTCCAACCCTGTTATTTCTGAGGAGATACTCCAACCCTAATTTTATTTCCAAAACACCAATTTTT
745985 CATACTCCAACCTTGCTAT
131 CATACTCCAACCTTGCTAT
* *
746004 TTTCG-AGGTGATACTCTAACCTC-AGTTTTATTTCCAAAACATCGATTTTCCATAATC-GGAGA
1 TTTCGAAGG-GATACTCTAACCTCAAGTTTTATTTCCAAAACACCGATTTTCCAAAATCAGG-GA
* *
746066 TACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCTAATTTTATTTCCAAAACACCAATTT
64 TACTCCAACCCTGTTATTTCTGAGGAGATACTCCAACCCTAATTTTATTTCCAAAACACCAATTT
746131 T
129 T
746132 CAACCATCGG
Statistics
Matches: 114, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
147 2 0.02
148 93 0.82
149 19 0.17
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.36
Consensus pattern (149 bp):
TTTCGAAGGGATACTCTAACCTCAAGTTTTATTTCCAAAACACCGATTTTCCAAAATCAGGGATA
CTCCAACCCTGTTATTTCTGAGGAGATACTCCAACCCTAATTTTATTTCCAAAACACCAATTTTT
CATACTCCAACCTTGCTAT
Found at i:758964 original size:61 final size:61
Alignment explanation
Indices: 758850--759383 Score: 539
Period size: 61 Copynumber: 8.8 Consensus size: 61
758840 AACCTTTTAT
* * * * *
758850 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTCTCC-TTTCAAATCCCACATAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
758911 CCTTCTAGTCCTCAAAGAGCAGGACACCTTTCCTTTTCGAAGCTCACACAAGTTAGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* ** * * *
758972 TCTTCTAGTCCTCAAAGAATAGGAC-ACTTTCC-TTTCAAAGCTCACACAAGTTGGTAGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
759031 CCTTTTAGTCCTCAAAGAGAAGGACGCCTTT-CTCTTTCAAAGCCCATACAAGTTGATGGTA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTCCT-TTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
759092 CCTTTTAGTCCTTAAAGAGCAGGATGCCCTTTGCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACG-CCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
759154 CTTTTTAGTCCTC-AAGAGCAGGATGCCTTCTCCTTTT-AAAGCCCACACAATTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * *
759214 CCTTCCAGTCCTAAAAGAGTAGGATGCCTTTTCCTTTT-AAAGCTCACACAAGTTGGTGTCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
759275 CCTT-TCAGTCCTTAAAGAGCAGGATGCCTTTTTCTTTT-AAAGTCCACACAAGTTGGTGGCA
1 CCTTCT-AGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
759336 TCTTCCAATCCTCAAAGAGTAGGACACC-TTCTCTTTTCAAAGCCCACA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTC-CTTTTCAAAGCCCACA
759384 GGAGCTGGTG
Statistics
Matches: 400, Mismatches: 60, Indels: 26
0.82 0.12 0.05
Matches are distributed among these distances:
59 48 0.12
60 53 0.13
61 255 0.64
62 42 0.10
63 2 0.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (61 bp):
CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:759267 original size:183 final size:182
Alignment explanation
Indices: 758856--759383 Score: 599
Period size: 183 Copynumber: 2.9 Consensus size: 182
758846 TTATCCTTTT
* * * * *
758856 AGTCCTCAAAGAGCAA-GATGCCTTCTCCTTTCAAATCCCACATAAGTTGGTGGCACCTTCTAGT
1 AGTCCTCAAAGAG-AAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGTACCTTTTAGT
* * * *
758920 CCTCAAAGAGCAGGA--CACCTTTCCTTTTCGAAGCTCACACAAGTTAGTGGCATCTTCTAGTCC
65 CCTTAAAGAGCAGGATGC-CCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTCTAGTCC
* * * **
758983 TCAAAGAATAGGACACTT-TCCTTTCAAAGCTCACACAAGTTGGTAGCACCTTTT
129 TCAAAGAGTAGGAC-CTTCTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCC
* * *
759037 AGTCCTCAAAGAGAAGGACGCC-TTTCTCTTTCAAAGCCCATACAAGTTGATGGTACCTTTTAGT
1 AGTCCTCAAAGAGAAGGATGCCTTTTC-CTTTCAAAGCCCACACAAGTTGGTGGTACCTTTTAGT
* *
759101 CCTTAAAGAGCAGGATGCCCTTTGCTTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTTTAGTCC
65 CCTTAAAGAGCAGGATGCCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATC-TTCTAGTCC
* * *
759165 TC-AAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAATTTGGTGGCACCTTCC
129 TCAAAGAGTAGGA--CCTTCTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCC
* * * * *
759220 AGTCCTAAAAGAGTAGGATGCCTTTTCCTTTTAAAGCTCACACAAGTTGGT-GTCACCTTTCAGT
1 AGTCCTCAAAGAGAAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGT-ACCTTTTAGT
* * * * *
759284 CCTTAAAGAGCAGGATGCCTTTTTCTTTT-AAAGTCCACACAAGTTGGTGGCATCTTCCAATCCT
65 CCTTAAAGAGCAGGATGCCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTCTAGTCCT
759348 CAAAGAGTAGGACACCTTCT-CTTTTCAAAGCCCACA
130 CAAAGAGTAGG--ACCTTCTCCTTTT-AAAGCCCACA
759384 GGAGCTGGTG
Statistics
Matches: 295, Mismatches: 37, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
180 5 0.02
181 72 0.24
182 81 0.27
183 132 0.45
184 4 0.01
185 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (182 bp):
AGTCCTCAAAGAGAAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGTACCTTTTAGTC
CTTAAAGAGCAGGATGCCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTCTAGTCCTC
AAAGAGTAGGACCTTCTCCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCC
Found at i:759995 original size:30 final size:29
Alignment explanation
Indices: 759959--760101 Score: 88
Period size: 30 Copynumber: 5.4 Consensus size: 29
759949 TTCTTCATTA
759959 TATCGATACATTTTGGGTTTTACCTAGATG
1 TATCGATACATTTTGGGTTTTACC-AGATG
*
759989 TATCGATACA-TTT--G---T--CA-TTG
1 TATCGATACATTTTGGGTTTTACCAGATG
*
760009 TATTGATACATTTTGGGTTTTACCCAGATG
1 TATCGATACATTTTGGGTTTTA-CCAGATG
* *
760039 TATCGATACA---T---TCTT--CA-TTG
1 TATCGATACATTTTGGGTTTTACCAGATG
*
760059 TATCGATACATTCTGGGTTTTACCTAGATG
1 TATCGATACATTTTGGGTTTTACC-AGATG
760089 TATCGATACATTT
1 TATCGATACATTT
760102 CTCAATGTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 40
0.63 0.07 0.30
Matches are distributed among these distances:
20 23 0.27
21 6 0.07
22 1 0.01
23 2 0.02
24 4 0.05
26 4 0.05
27 2 0.02
28 1 0.01
29 6 0.07
30 35 0.42
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.43
Consensus pattern (29 bp):
TATCGATACATTTTGGGTTTTACCAGATG
Found at i:760017 original size:50 final size:50
Alignment explanation
Indices: 759937--760116 Score: 283
Period size: 50 Copynumber: 3.6 Consensus size: 50
759927 TTTCACAATT
*
759937 TGTATCGATACATTCTTCATTATATCGATACATTTTGGGTTTTACCTAGA
1 TGTATCGATACATTCTTCATTGTATCGATACATTTTGGGTTTTACCTAGA
* *
759987 TGTATCGATACATT-TGTCATTGTATTGATACATTTTGGGTTTTACCCAGA
1 TGTATCGATACATTCT-TCATTGTATCGATACATTTTGGGTTTTACCTAGA
*
760037 TGTATCGATACATTCTTCATTGTATCGATACATTCTGGGTTTTACCTAGA
1 TGTATCGATACATTCTTCATTGTATCGATACATTTTGGGTTTTACCTAGA
*
760087 TGTATCGATACATT-TCTCAATGTATCGATA
1 TGTATCGATACATTCT-TCATTGTATCGATA
760117 TATTCAAGCA
Statistics
Matches: 120, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
49 2 0.02
50 117 0.98
51 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (50 bp):
TGTATCGATACATTCTTCATTGTATCGATACATTTTGGGTTTTACCTAGA
Found at i:760111 original size:100 final size:100
Alignment explanation
Indices: 759937--760116 Score: 315
Period size: 100 Copynumber: 1.8 Consensus size: 100
759927 TTTCACAATT
*
759937 TGTATCGATACATTCTTCATTATATCGATACATTTTGGGTTTTACCTAGATGTATCGATACATTT
1 TGTATCGATACATTCTTCATTATATCGATACATTCTGGGTTTTACCTAGATGTATCGATACATTT
* * *
760002 GTCATTGTATTGATACATTTTGGGTTTTACCCAGA
66 CTCAATGTATCGATACATTTTGGGTTTTACCCAGA
*
760037 TGTATCGATACATTCTTCATTGTATCGATACATTCTGGGTTTTACCTAGATGTATCGATACATTT
1 TGTATCGATACATTCTTCATTATATCGATACATTCTGGGTTTTACCTAGATGTATCGATACATTT
760102 CTCAATGTATCGATA
66 CTCAATGTATCGATA
760117 TATTCAAGCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (100 bp):
TGTATCGATACATTCTTCATTATATCGATACATTCTGGGTTTTACCTAGATGTATCGATACATTT
CTCAATGTATCGATACATTTTGGGTTTTACCCAGA
Found at i:762782 original size:79 final size:79
Alignment explanation
Indices: 762472--762840 Score: 345
Period size: 78 Copynumber: 4.7 Consensus size: 79
762462 TATTTGATGT
* * * * * * * *
762472 TTTTATTTCTGAAATACTGATTTTCCACCATCGGGGATGCTCCAATCTCGTTATTTTTGA-GAGA
1 TTTTATTTCTAAAACACCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAG-
* *
762536 ATACTCCAACCTCGG
65 ATACTCCAACCCCAG
* * * * * *
762551 TTTT-TCTTCTAAAACACTGATTTTCTATAATCAGGGATACTCTAACCCCTTTATTTTC-AGGAG
1 TTTTAT-TTCTAAAACACCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAG
**
762614 ATACTCCAACCTTAG
65 ATACTCCAACCCCAG
* * ** ** *
762629 TTTTATTTCTAAAACACCGATTTTTCACAATTGGGGATACTTTAA-CCCGTTATTTTTTAGAAGA
1 TTTTATTTCTAAAACACCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAGA
*
762693 TACTCTAACCCCAG
66 TACTCCAACCCCAG
** **
762707 TTTTATCTT-TAAAACATTGATTTTTTACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAG
1 TTTTAT-TTCTAAAACACCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAG
762771 ATACTCCAA-CCCAG
65 ATACTCCAACCCCAG
* * * * * *
762785 TTTTATTTCCAAAATATCAATTTTCCACTATCGGGGATACTCCAACCCCATTATTT
1 TTTTATTTCTAAAACACCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTT
762841 CTAAGGGGAG
Statistics
Matches: 238, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
77 12 0.05
78 153 0.64
79 73 0.31
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (79 bp):
TTTTATTTCTAAAACACCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAGA
TACTCCAACCCCAG
Found at i:762832 original size:156 final size:156
Alignment explanation
Indices: 762491--762832 Score: 420
Period size: 156 Copynumber: 2.2 Consensus size: 156
762481 TGAAATACTG
* * * * *
762491 ATTTTCCACCATCGGGGATGCTCCAATCTCGTTATTTTTGAGAGAATACTCCAACCTCGGTTTTT
1 ATTTTCCACAATCGGGGATACTCCAA-CCCGTTATTTTTGAGAGAATACTCCAACCCCAGTTTTT
* * *
762556 CTTCTAAAACACTGATTTTCTATAATCAGGGATACTCTAACCCCTTTATTTTCAGGAGATACTCC
65 CTTCTAAAACACTGATTTTCTACAATCAGGGATACTCCAACCCCGTTATTTTCAGGAGATACTCC
* * *
762621 AACCTTAGTTTTATTTCTAAAACACCG
130 AACCTCAGTTTTATTTCCAAAACACCA
* * ** * *
762648 ATTTTTCACAATTGGGGATACTTTAACCCGTTATTTTTTAGA-AGATACTCTAACCCCAGTTTTA
1 ATTTTCCACAATCGGGGATACTCCAACCCGTTATTTTTGAGAGA-ATACTCCAACCCCAGTTTT-
* * *
762712 TCTT-TAAAACATTGATTTTTTACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAGATACT
64 TCTTCTAAAACACTGATTTTCTACAATCAGGGATACTCCAACCCCGTTATTTTC-AGGAGATACT
* *
762776 CCAACC-CAGTTTTATTTCCAAAATATCA
128 CCAACCTCAGTTTTATTTCCAAAACACCA
*
762804 ATTTTCCACTATCGGGGATACTCCAACCC
1 ATTTTCCACAATCGGGGATACTCCAACCC
762833 CATTATTTCT
Statistics
Matches: 155, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
155 1 0.01
156 114 0.74
157 40 0.26
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (156 bp):
ATTTTCCACAATCGGGGATACTCCAACCCGTTATTTTTGAGAGAATACTCCAACCCCAGTTTTTC
TTCTAAAACACTGATTTTCTACAATCAGGGATACTCCAACCCCGTTATTTTCAGGAGATACTCCA
ACCTCAGTTTTATTTCCAAAACACCA
Found at i:762855 original size:78 final size:79
Alignment explanation
Indices: 762584--762887 Score: 206
Period size: 78 Copynumber: 3.9 Consensus size: 79
762574 TCTATAATCA
* * * * * * * *
762584 GGGATACTCTAACCCCTTTATTTTC-AGGAGATACTCCAACCTTAG-TTTTATTTCTAAAACACC
1 GGGATACTCCAACCCCATTATTTTCAAGGAGAGACTCCAACC-CAGTTTTTATCTCCAAAATATC
* * * *
762647 GATTTTTCACAATTG
65 AATTTTCCACTATCG
** * ** * * * ** * *
762662 GGGATACTTTAA-CCCGTTATTTTTTAGAAGATACTCTAACCCCAG-TTTTATCTTTAAAACATT
1 GGGATACTCCAACCCCATTATTTTCAAGGAGAGACTCCAA-CCCAGTTTTTATCTCCAAAATATC
* ** *
762725 GATTTTTTACAATCG
65 AATTTTCCACTATCG
* * * *
762740 GGGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCAG-TTTTATTTCCAAAATATCA
1 GGGATACTCCAACCCCATTATTTTCAAGGAGAGACTCCAACCCAGTTTTTATCTCCAAAATATCA
762804 ATTTTCCACTATCG
66 ATTTTCCACTATCG
* * ** *
762818 GGGATACTCCAACCCCATTA-TTTCTAAGGGGAGACTCCGACCTTGTTTTTATCTCCAAAATATT
1 GGGATACTCCAACCCCATTATTTTC-AAGGAGAGACTCCAACCCAGTTTTTATCTCCAAAATATC
762882 AATTTT
65 AATTTT
762888 TTTATTGAGA
Statistics
Matches: 185, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
77 14 0.08
78 124 0.67
79 47 0.25
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (79 bp):
GGGATACTCCAACCCCATTATTTTCAAGGAGAGACTCCAACCCAGTTTTTATCTCCAAAATATCA
ATTTTCCACTATCG
Found at i:762866 original size:156 final size:155
Alignment explanation
Indices: 762491--762889 Score: 397
Period size: 156 Copynumber: 2.5 Consensus size: 155
762481 TGAAATACTG
* * * * * *
762491 ATTTTCCACCATCGGGGATGCTCCAATCTCGTTATTTTTGAGAGAATACTCCAACCTCGGTTTT-
1 ATTTTCCACAATCGGGGATACTCCAA-CCCGTTATTTTTAAGAGGATACTCCAACCT-AGTTTTA
* * * * *
762555 TCTTCTAAAACACTGATTTTCTATAATCAGGGATACTCTAACCCCTTTATTTTCAGGAGATACTC
64 TCTT-TAAAACATTGATTTTTTACAATCAGGGATACTCCAACCCCGTTATTTTCAGGAGATACTC
* * *
762620 CAACCTTAGTTTTATTTCTAAAACACCG
128 CAACCTCAGTTTTATTTCCAAAACACCA
* * ** * * * *
762648 ATTTTTCACAATTGGGGATACTTTAACCCGTTATTTTTTAGAAGATACTCTAACCCCAGTTTTAT
1 ATTTTCCACAATCGGGGATACTCCAACCCGTTATTTTTAAGAGGATACTCCAA-CCTAGTTTTAT
*
762713 CTTTAAAACATTGATTTTTTACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGAGATACTCC
65 CTTTAAAACATTGATTTTTTACAATCAGGGATACTCCAACCCCGTTATTTTC-AGGAGATACTCC
* *
762778 AACC-CAGTTTTATTTCCAAAATATCA
129 AACCTCAGTTTTATTTCCAAAACACCA
* * * * * * *
762804 ATTTTCCACTATCGGGGATACTCCAACCCCATTATTTCTAAGGGGAGACTCCGACCTTGTTTTTA
1 ATTTTCCACAATCGGGGATACTCCAA-CCCGTTATTTTTAAGAGGATACTCCAACCTAG-TTTTA
** * *
762869 TCTCCAAAATATTAATTTTTT
64 TCTTTAAAACATTGATTTTTT
762890 TATTGAGAGA
Statistics
Matches: 194, Mismatches: 43, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
156 111 0.57
157 83 0.43
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (155 bp):
ATTTTCCACAATCGGGGATACTCCAACCCGTTATTTTTAAGAGGATACTCCAACCTAGTTTTATC
TTTAAAACATTGATTTTTTACAATCAGGGATACTCCAACCCCGTTATTTTCAGGAGATACTCCAA
CCTCAGTTTTATTTCCAAAACACCA
Found at i:764147 original size:23 final size:22
Alignment explanation
Indices: 764121--764188 Score: 59
Period size: 24 Copynumber: 3.0 Consensus size: 22
764111 ATAGGTTTAA
764121 TAGGTGTTTGATATTAGGGTTTT
1 TAGGTGTTTGAT-TTAGGGTTTT
* *
764144 TAGGGGGTTTGATTTTA-AGTTTT
1 TA-GGTGTTTGA-TTTAGGGTTTT
* *
764167 AAGGT-TATGATTTAGGGTTTT
1 TAGGTGTTTGATTTAGGGTTTT
764188 T
1 T
764189 TTAGGGTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
20 4 0.11
21 9 0.26
22 2 0.06
23 8 0.23
24 11 0.31
25 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.51
Consensus pattern (22 bp):
TAGGTGTTTGATTTAGGGTTTT
Found at i:766547 original size:67 final size:66
Alignment explanation
Indices: 766408--766559 Score: 173
Period size: 67 Copynumber: 2.3 Consensus size: 66
766398 ATTGGTTCCG
* * **
766408 CCATGTAGAGTAGTGGTGCAAAAACTCTAGGTACTATGTTCGGCTACTCTTATTTCCACTAGTTT
1 CCATGTAGAGTAGTGGTGCAAAAACTCTAAGTACTATGTTCAGCTACTCTTATCGCCACTAGTTT
766473 A
66 A
* * * *
766474 GCCATGTAGAGTAGTGGTGCAAAAACTCTAAGTATTATGCTT-AGCTACTCTTGTCGCCATTGGT
1 -CCATGTAGAGTAGTGGTGCAAAAACTCTAAGTACTATG-TTCAGCTACTCTTATCGCCACTAG-
766538 TCTTA
63 T-TTA
*
766543 -CATGTAAAGTAGTGGTG
1 CCATGTAGAGTAGTGGTG
766560 TAGAGGGGCG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
67 67 0.92
68 3 0.04
69 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (66 bp):
CCATGTAGAGTAGTGGTGCAAAAACTCTAAGTACTATGTTCAGCTACTCTTATCGCCACTAGTTT
A
Found at i:766915 original size:27 final size:28
Alignment explanation
Indices: 766875--766938 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
766865 CTAAAGGGAT
* *
766875 TAATTTAAATTTTACAT-ATGAAAAATTC
1 TAATTAAAAATTTA-ATCATGAAAAATTC
*
766903 -AATTAAAAATTTAATCATGTAAAATTC
1 TAATTAAAAATTTAATCATGAAAAATTC
766930 TAATTAAAA
1 TAATTAAAA
766939 TACCATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 2 0.06
27 21 0.68
28 8 0.26
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (28 bp):
TAATTAAAAATTTAATCATGAAAAATTC
Found at i:767350 original size:4 final size:4
Alignment explanation
Indices: 767341--767388 Score: 57
Period size: 4 Copynumber: 12.2 Consensus size: 4
767331 AGTGAGGATG
767341 AAAT AAAT AAAT AAA- ATAAT AAAT AAAT AAAT AAGA- AAAT AAA- AAAT
1 AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT
767388 A
1 A
767389 TGGAAGTCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
3 5 0.13
4 32 0.82
5 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:771135 original size:23 final size:23
Alignment explanation
Indices: 771108--771160 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
771098 AAATTTAAAG
*
771108 TTAAAATTTTACTTAAATACAAA
1 TTAAAAATTTACTTAAATACAAA
* *
771131 TTAAAAATTTATTTAAATATAAA
1 TTAAAAATTTACTTAAATACAAA
771154 TTAAAAA
1 TTAAAAA
771161 CTAAAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.40
Consensus pattern (23 bp):
TTAAAAATTTACTTAAATACAAA
Found at i:771767 original size:32 final size:32
Alignment explanation
Indices: 771726--771820 Score: 104
Period size: 32 Copynumber: 2.9 Consensus size: 32
771716 ATTTTAAAAA
**
771726 TTTTAAATTATTTTTTATTTGAGTTATTTTAAG
1 TTTTAAATTATTTTAAATTT-AGTTATTTTAAG
* * *
771759 -TTTAAATTATTTTGAATTTAAATTATTTT-GG
1 TTTTAAATTATTTTAAATTT-AGTTATTTTAAG
771790 TTTTAAATTATTTTAAATTTATGTTATTTTA
1 TTTTAAATTATTTTAAATTTA-GTTATTTTA
771821 GATTTAGAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
31 2 0.04
32 50 0.96
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (32 bp):
TTTTAAATTATTTTAAATTTAGTTATTTTAAG
Found at i:771768 original size:16 final size:15
Alignment explanation
Indices: 771691--771826 Score: 85
Period size: 16 Copynumber: 8.6 Consensus size: 15
771681 GAGTTTAAGA
*
771691 TTTATTTTAAATTAT
1 TTTAATTTAAATTAT
* *
771706 ATTATTTTAAATT-T
1 TTTAATTTAAATTAT
**
771720 TAAAAATTTTAAATTATT
1 T-TTAA-TTTAAATTA-T
* * *
771738 TTTTATTTGAGTTAT
1 TTTAATTTAAATTAT
771753 TTTAAGTTTAAATTAT
1 TTTAA-TTTAAATTAT
771769 TTTGAATTTAAATTAT
1 TTT-AATTTAAATTAT
**
771785 TTTGGTTTTAAATTAT
1 TTT-AATTTAAATTAT
**
771801 TTTAAATTTATGTTAT
1 TTT-AATTTAAATTAT
771817 TTTAGATTTA
1 TTTA-ATTTA
771827 GAACAATGAG
Statistics
Matches: 94, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
14 1 0.01
15 19 0.20
16 69 0.73
17 3 0.03
18 2 0.02
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (15 bp):
TTTAATTTAAATTAT
Found at i:771826 original size:48 final size:48
Alignment explanation
Indices: 771727--771819 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
771717 TTTTAAAAAT
* * * *
771727 TTTAAATTATTTTTTATTTGAGTTATTTTAAGTTTAAATTATTTTGAA
1 TTTAAATTATTTTGTATTTAAATTATTTTAAATTTAAATTATTTTGAA
**
771775 TTTAAATTATTTTGGT-TTTAAATTATTTTAAATTTATGTTATTTT
1 TTTAAATTATTTT-GTATTTAAATTATTTTAAATTTAAATTATTTT
771820 AGATTTAGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 37 0.97
49 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (48 bp):
TTTAAATTATTTTGTATTTAAATTATTTTAAATTTAAATTATTTTGAA
Found at i:772138 original size:26 final size:27
Alignment explanation
Indices: 772109--772164 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
772099 ATATTTAATT
*
772109 AAAATTTTATTAAA-ATATA-AAAAATA
1 AAAATATT-TTAAATATATATAAAAATA
772135 AAAATATTTTAAATATATATAAAAATA
1 AAAATATTTTAAATATATATAAAAATA
772162 AAA
1 AAA
772165 GTAAACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 12 0.44
27 10 0.37
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (27 bp):
AAAATATTTTAAATATATATAAAAATA
Found at i:773814 original size:22 final size:21
Alignment explanation
Indices: 773783--773914 Score: 72
Period size: 22 Copynumber: 6.0 Consensus size: 21
773773 CTTTTCTCGC
*
773783 TTTTTTTTTAATTTTTAGATTA
1 TTTTTATTTAATTTTTA-ATTA
*
773805 TTTTTATTTATATTATTAATTTA
1 TTTTTATTTA-ATTTTTAA-TTA
* * *
773828 TTTTTAATATAATTTATATTTATA
1 TTTTT-ATTTAATTTTTA-AT-TA
*
773852 TTTATTATTTAA--TTTAAATA
1 TTT-TTATTTAATTTTTAATTA
**
773872 TTTTTTAAATAATTTTTAATTA
1 -TTTTTATTTAATTTTTAATTA
*
773894 TTTATTATAT-ATATTTTAATT
1 TTT-TTATTTAAT-TTTTAATT
773915 TAATATACTT
Statistics
Matches: 85, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
20 8 0.09
21 8 0.09
22 33 0.39
23 20 0.24
24 14 0.16
25 2 0.02
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (21 bp):
TTTTTATTTAATTTTTAATTA
Found at i:773832 original size:44 final size:43
Alignment explanation
Indices: 773784--773916 Score: 112
Period size: 44 Copynumber: 3.0 Consensus size: 43
773774 TTTTCTCGCT
*
773784 TTTTTTTTAATTTTTAGATTATTTTTATTTATATTATTAATTTA
1 TTTTTTATAATTTTTA-ATTATTTTTATTTATATTATTAATTTA
* * * *
773828 TTTTTAATATAATTTATATTTATATTTA-TTAT-TTAATTTAA-ATA
1 TTTTT--TATAATTTTTAATTATTTTTATTTATATT-A-TTAATTTA
*
773872 TTTTTTAAATAATTTTTAATTATTTATTATATATATT-TTAATTTA
1 TTTTTT--ATAATTTTTAATTATTT-TTATTTATATTATTAATTTA
773917 ATATACTTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 19
0.70 0.10 0.19
Matches are distributed among these distances:
42 1 0.01
43 2 0.03
44 35 0.51
45 17 0.25
46 12 0.17
47 2 0.03
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (43 bp):
TTTTTTATAATTTTTAATTATTTTTATTTATATTATTAATTTA
Found at i:773842 original size:16 final size:17
Alignment explanation
Indices: 773807--773853 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
773797 TTAGATTATT
* *
773807 TTTATTTATATTATTAA
1 TTTATTTTTAATATTAA
773824 TTTATTTTTAATA-TAA
1 TTTATTTTTAATATTAA
*
773840 TTTATATTT-ATATT
1 TTTATTTTTAATATT
773854 TATTATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 3 0.12
16 12 0.46
17 11 0.42
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTATTTTTAATATTAA
Found at i:773850 original size:35 final size:34
Alignment explanation
Indices: 773804--773950 Score: 97
Period size: 35 Copynumber: 4.2 Consensus size: 34
773794 TTTTTAGATT
*
773804 ATTTTTATTTATATTATTAATTTATTTTTAATATA
1 ATTTATATTTA-ATTATTAATTTATTTTTAATATA
*
773839 ATTTATATTTATATTTATT-ATTTA-ATTTAA-ATA
1 ATTTATATTTA-A-TTATTAATTTATTTTTAATATA
* * ** *
773872 TTTTTTAAATAATTTTTAA-TTATTTATTATATATA
1 ATTTATATTTAATTATTAATTTATTT-TTA-ATATA
*
773907 TTTTA-ATTTAATATACTTAATAATTATTTTTTAATATA
1 ATTTATATTTAAT-TA-TTAAT--TTA-TTTTTAATATA
773945 ATTTAT
1 ATTTAT
773951 CTCACTTTAT
Statistics
Matches: 86, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
31 7 0.08
32 3 0.03
33 13 0.15
34 11 0.13
35 25 0.29
36 9 0.10
38 9 0.10
39 6 0.07
40 3 0.03
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (34 bp):
ATTTATATTTAATTATTAATTTATTTTTAATATA
Found at i:773886 original size:12 final size:11
Alignment explanation
Indices: 773864--773912 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
773854 TATTATTTAA
773864 TTTAAATATTT
1 TTTAAATATTT
*
773875 TTTAAATAATT
1 TTTAAATATTT
*
773886 TTTAATTATTT
1 TTTAAATATTT
* * *
773897 ATTATATATAT
1 TTTAAATATTT
773908 TTTAA
1 TTTAA
773913 TTTAATATAC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTAAATATTT
Found at i:774125 original size:16 final size:17
Alignment explanation
Indices: 774099--774139 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
774089 CTTTTTATTA
774099 TTTATAATATA-T-AAAT
1 TTTA-AATATAGTAAAAT
774115 TATTAAATATAGTAAAAT
1 T-TTAAATATAGTAAAAT
774133 TTTAAAT
1 TTTAAAT
774140 TTTAATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 7 0.32
17 10 0.45
18 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
TTTAAATATAGTAAAAT
Done.