genome.fa.s1850.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1850
Parameters: 2 7 7 80 10 50 1000
Length:  46659

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64--101	19	2.0	20	94	5	69	31	18	13	36	1.89
64--109	12	4.2	12	74	25	57	32	17	15	34	1.91
64--128	32	2.1	31	88	2	94	30	16	15	36	1.90
1499--1800	51	5.8	52	66	11	154	29	26	11	32	1.91
1307--1934	210	3.0	208	90	3	940	29	27	12	30	1.93
1838--2006	78	2.2	79	80	7	193	24	28	16	30	1.96
7088--7148	13	5.2	13	74	22	71	39	14	14	31	1.87
7070--7168	33	3.0	33	94	2	164	40	13	15	31	1.85
7102--7170	20	3.8	20	75	25	89	39	11	14	34	1.82
7289--7327	21	1.9	20	94	5	69	35	12	15	35	1.86
9634--9708	20	3.7	20	77	7	78	37	10	14	37	1.81
12350--12389	21	1.9	21	100	0	80	22	10	25	42	1.84
14930--14970	2	20.5	2	89	0	64	46	2	2	48	1.28
15909--15937	2	14.5	2	100	0	58	51	0	0	48	1.00
16351--16379	2	14.5	2	100	0	58	51	0	0	48	1.00
16359--16425	33	2.0	33	94	5	118	55	2	8	32	1.46
19029--19123	16	5.9	16	77	4	102	54	5	0	40	1.23
19015--19114	48	2.1	48	84	3	130	55	5	0	40	1.22
29752--29791	18	2.2	18	86	0	53	50	2	0	47	1.14
29961--30138	2	97.0	2	64	20	50	38	0	1	59	1.07
30007--30132	20	5.8	20	70	24	62	38	0	0	61	1.02
29973--30074	43	2.4	45	77	12	106	39	0	1	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30008--30138	73	1.9	71	83	15	175	38	0	0	60	1.02
30026--30136	42	2.5	43	78	17	113	36	0	0	62	1.02
30906--31004	37	2.8	34	80	8	117	29	1	28	41	1.63
30977--31026	22	2.3	22	89	0	73	34	2	24	40	1.66
35566--35657	37	2.6	34	79	12	114	31	2	27	39	1.69
35639--35679	13	3.5	13	75	25	54	39	4	19	36	1.73
35639--35688	22	2.3	22	92	0	82	34	4	24	38	1.74
36889--36962	37	2.0	37	86	2	105	39	5	5	50	1.48
36889--36962	18	4.1	18	82	3	94	39	5	5	50	1.48
38624--38676	26	2.0	26	92	7	90	22	37	11	28	1.89
39809--39893	18	4.8	18	78	9	95	37	8	9	44	1.67
42674--42699	10	2.6	10	100	0	52	69	0	0	30	0.89
43984--44012	2	15.0	2	92	7	51	48	0	0	51	1.00
44594--44635	20	2.1	20	86	8	59	35	2	0	61	1.09
45908--45955	23	2.0	24	84	8	62	50	0	0	50	1.00

Tables:   1

The End!