genome.fa.s1853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1853
Parameters: 2 7 7 80 10 50 1000
Length:  113052

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3181--3213	1	33.0	1	100	0	66	0	100	0	0	0.00
4146--4255	57	1.9	57	90	0	175	17	18	31	32	1.94
7825--7860	3	12.0	3	93	0	63	63	2	0	33	1.08
12286--12524	97	2.5	96	82	6	277	35	10	24	29	1.89
14642--14780	51	2.7	52	85	5	201	40	12	16	30	1.86
14817--14890	21	3.6	21	87	7	80	31	17	12	39	1.86
14817--14890	20	3.6	20	88	3	94	31	17	12	39	1.86
17718--17763	21	2.1	23	84	8	60	39	15	19	26	1.91
18662--18786	20	5.7	20	71	18	97	40	12	17	28	1.87
19516--19729	48	4.5	48	88	1	290	34	18	27	19	1.95
19832--20059	28	7.8	28	84	6	285	19	16	33	30	1.94
19831--20059	58	3.9	56	84	5	287	20	16	33	30	1.94
19832--20056	87	2.6	87	87	5	310	18	16	34	30	1.93
20360--20553	108	1.8	107	93	1	334	26	14	20	38	1.91
21386--21466	22	3.9	21	75	21	71	3	1	16	79	0.95
21389--21469	30	2.7	28	80	17	92	3	1	17	77	0.97
21387--21467	10	7.8	10	74	9	65	3	1	16	79	0.95
27727--28036	52	6.0	52	75	6	232	39	13	19	27	1.89
28238--28287	20	2.5	20	96	0	91	28	12	20	40	1.87
28380--28431	19	2.7	20	84	3	70	30	13	17	38	1.88
28461--28592	20	7.7	20	67	31	108	32	14	18	34	1.91
28477--28572	13	8.3	13	69	25	81	34	15	16	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28462--28625	33	5.0	33	96	0	292	34	13	17	34	1.89
28576--28605	13	2.3	13	94	0	51	36	10	13	40	1.78
30448--30505	29	2.0	29	100	0	116	31	24	31	13	1.94
37278--37302	13	1.9	13	100	0	50	36	16	16	32	1.90
37368--37397	13	2.3	13	94	0	51	36	16	13	33	1.88
37353--37417	33	2.0	33	84	6	87	35	12	16	35	1.87
38149--38403	52	4.9	52	86	0	285	38	13	21	27	1.90
38469--38556	32	2.8	31	86	5	115	12	20	34	32	1.90
40051--40108	19	2.8	21	74	12	57	13	3	10	72	1.24
40051--40110	21	3.0	19	68	27	52	13	3	10	73	1.21
46941--47448	155	3.3	149	75	9	452	37	20	17	24	1.93
49413--50058	167	3.9	165	86	4	845	51	9	9	29	1.66
49448--50068	333	1.9	334	87	2	917	50	9	9	30	1.66
49486--50169	333	2.1	332	82	6	821	51	9	9	29	1.66
51708--51764	13	3.9	13	76	24	60	35	14	17	33	1.90
51721--51783	19	3.7	18	76	24	73	33	12	17	36	1.88
51707--51791	32	2.7	32	98	0	161	32	12	17	36	1.88
55559--55610	20	2.6	20	87	0	77	34	11	13	40	1.81
61647--61701	27	2.2	24	90	9	83	20	32	16	30	1.94
66799--66958	86	1.9	86	85	0	221	40	11	18	28	1.86
69182--69320	51	2.7	51	86	1	197	42	10	15	31	1.80
69182--69307	52	2.4	52	89	1	191	44	11	15	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69377--69423	20	2.3	20	88	3	67	34	14	8	42	1.77
69385--69428	20	2.2	20	87	4	61	36	13	9	40	1.76
72030--72082	27	2.0	27	84	0	70	54	16	11	16	1.70
73840--73879	20	2.0	20	100	0	80	30	15	25	30	1.95
82496--82553	23	2.5	23	80	0	62	36	13	3	46	1.61
83115--83340	87	2.6	86	80	6	242	30	27	9	31	1.88
83115--83397	87	3.3	87	78	8	222	30	26	8	34	1.87
84206--84230	13	1.9	13	100	0	50	20	24	24	32	1.98
88528--88583	13	4.4	13	80	15	64	1	19	1	76	0.96
88528--88572	23	1.9	24	90	4	74	0	17	0	82	0.68
88527--88583	28	2.0	28	83	12	73	1	19	1	77	0.95
91303--91327	13	1.9	13	100	0	50	32	20	16	32	1.94
93680--93726	21	2.3	21	76	23	55	42	4	19	34	1.70
93847--93885	13	3.0	13	96	0	69	35	15	17	30	1.91
93871--93949	20	3.7	20	78	15	77	44	15	15	25	1.85
95965--95995	15	2.1	15	93	0	53	12	22	16	48	1.80
97798--97842	22	2.1	21	84	8	56	22	17	4	55	1.60
100061--100086	13	2.0	13	100	0	52	30	15	15	38	1.88
102862--102992	52	2.5	52	94	0	226	29	16	19	35	1.93
103001--103025	13	1.9	13	100	0	50	36	16	16	32	1.90
103064--103194	33	4.0	33	95	1	203	35	16	11	36	1.85
103117--103174	13	3.9	13	73	26	53	32	17	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103130--103195	20	3.7	20	73	26	83	34	18	12	34	1.88
109647--109756	42	2.6	42	89	0	166	9	45	3	41	1.53
109671--109756	24	3.8	24	69	17	67	10	44	3	41	1.56

Tables:   1

The End!