genome.fa.s1854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1854
Parameters: 2 7 7 80 10 50 1000
Length:  95222

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517--572	19	2.9	19	83	2	67	35	12	17	33	1.88
9060--9089	13	2.3	13	100	0	60	36	13	16	33	1.88
9155--9210	13	4.9	12	72	26	50	37	14	16	32	1.88
10191--10248	20	2.9	21	82	5	66	32	15	13	37	1.87
18723--18760	20	1.9	20	94	0	67	39	31	0	28	1.57
20627--20958	166	2.0	167	81	5	386	31	10	8	50	1.66
21588--21620	13	2.6	13	85	4	50	78	0	21	0	0.75
22516--23207	142	4.9	142	84	3	867	35	11	10	42	1.76
22516--23202	282	2.4	285	84	3	868	35	11	10	42	1.76
23341--23938	154	3.9	149	80	8	583	25	15	19	40	1.90
23404--23938	154	3.5	152	80	7	612	25	15	19	39	1.91
30862--31070	50	4.2	50	73	6	190	35	22	19	22	1.96
31951--32302	165	2.1	166	78	9	364	32	11	10	44	1.76
32022--32330	166	1.9	166	85	6	439	30	11	11	47	1.73
33877--34151	148	1.9	149	81	6	344	36	12	11	39	1.79
34384--34717	154	2.2	154	80	5	361	24	18	18	38	1.93
36200--36294	45	2.1	44	82	3	118	37	16	18	26	1.92
35916--36385	50	9.5	50	71	6	209	34	18	21	26	1.96
36374--36483	48	2.2	50	85	6	145	35	14	23	26	1.93
42723--42871	78	1.9	78	84	5	203	32	12	10	45	1.74
43959--44057	43	2.3	43	94	0	171	32	17	18	32	1.94
48158--48204	21	2.3	21	76	23	55	42	4	19	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48325--48363	13	3.0	13	96	0	69	35	15	17	30	1.91
48349--48427	20	3.7	20	78	15	77	44	15	15	25	1.85
50442--50472	15	2.1	15	93	0	53	12	22	16	48	1.80
52267--52311	21	2.1	21	84	8	56	22	20	4	53	1.63
54529--54554	13	2.0	13	100	0	52	30	15	15	38	1.88
54990--55041	20	2.6	20	84	0	68	36	19	13	30	1.90
55660--55736	22	3.5	22	87	3	111	25	35	2	36	1.70
57622--57650	13	2.2	13	100	0	58	41	17	13	27	1.87
62374--62398	13	1.9	13	100	0	50	32	20	16	32	1.94
64937--64967	10	3.1	10	90	0	53	41	6	29	22	1.78
64991--65127	53	2.6	53	95	1	247	27	17	18	37	1.93
65097--65167	20	3.5	20	77	11	74	29	14	16	39	1.88
65207--65247	21	2.0	21	85	9	57	39	9	12	39	1.76
71970--72055	28	3.1	27	68	12	75	47	2	23	26	1.63
71940--72055	56	2.1	56	93	0	196	47	1	22	28	1.61
72020--72107	45	2.0	45	90	4	142	48	3	22	25	1.66
72774--72798	13	1.9	13	100	0	50	32	20	16	32	1.94
72755--72817	32	1.9	33	87	9	94	28	17	17	36	1.93
76004--76062	20	2.8	20	84	5	73	35	13	13	37	1.84
76084--76139	20	2.8	20	83	2	67	28	16	10	44	1.80
78089--78142	19	2.8	20	88	2	74	37	14	16	31	1.89
78714--78863	30	5.0	30	81	7	189	32	20	7	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78745--78871	62	2.1	61	91	4	202	36	18	6	39	1.76
80869--80915	23	2.0	23	91	0	76	42	14	10	31	1.80
86924--86948	13	1.9	13	100	0	50	32	16	16	36	1.90
86904--86968	33	2.0	32	85	11	87	33	18	13	33	1.90
87690--87741	20	2.8	17	78	21	59	32	17	17	32	1.93
87657--87719	32	1.9	33	87	9	94	30	19	14	36	1.91
92098--92188	41	2.3	41	83	9	109	35	2	32	29	1.70

Tables:   1

The End!